Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 244 of 325
Found at i:77186405 original size:27 final size:27
Alignment explanation
Indices: 77186375--77186428 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
77186365 TCATACAACC
* *
77186375 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
77186402 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
77186429 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:77189784 original size:17 final size:18
Alignment explanation
Indices: 77189762--77189797 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
77189752 CACATTGAAG
77189762 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
77189779 TGTTTTCATTGAAAACCT
1 TGTTTTCATCGAAAACCT
77189797 T
1 T
77189798 TCTTTGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:77191091 original size:28 final size:28
Alignment explanation
Indices: 77191030--77191123 Score: 93
Period size: 28 Copynumber: 3.3 Consensus size: 28
77191020 GATCCATACT
* * *
77191030 TATTCATTTGGCCCCTTTAGGCCCAATC-
1 TATTCATATGG-CCCATCAGGCCCAATCA
*
77191058 TCATTCATATGGCCTATCAGGCCCAATCA
1 T-ATTCATATGGCCCATCAGGCCCAATCA
* *
77191087 TATTCATATGGCCCATTAGGCCTAATCA
1 TATTCATATGGCCCATCAGGCCCAATCA
77191115 CT-TTCATAT
1 -TATTCATAT
77191124 CAGGCCCAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
28 45 0.80
29 11 0.20
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (28 bp):
TATTCATATGGCCCATCAGGCCCAATCA
Found at i:77191134 original size:21 final size:21
Alignment explanation
Indices: 77191104--77191143 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
77191094 ATGGCCCATT
* *
77191104 AGGCCTAATCACTTTCATATC
1 AGGCCCAATCACATTCATATC
77191125 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
77191144 GTCATGCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.10, T:0.28
Consensus pattern (21 bp):
AGGCCCAATCACATTCATATC
Found at i:77196490 original size:17 final size:18
Alignment explanation
Indices: 77196468--77196501 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
77196458 CACATTGAAG
77196468 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
77196485 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
77196502 CATCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:77197798 original size:28 final size:28
Alignment explanation
Indices: 77197755--77197828 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
77197745 GGCCCCTTTT
* *
77197755 GGCCCAATCTCATTCATATGGCCCATCG
1 GGCCCAATCACATTCATATGGCCCATCA
* * *
77197783 GGCCCAATCACTTTCATGTGGCCCGTCA
1 GGCCCAATCACATTCATATGGCCCATCA
*
77197811 GGCCCAATTACATTCATA
1 GGCCCAATCACATTCATA
77197829 GTCATGCAAC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.26
Consensus pattern (28 bp):
GGCCCAATCACATTCATATGGCCCATCA
Found at i:77198059 original size:16 final size:16
Alignment explanation
Indices: 77198038--77198069 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
77198028 AAACTTCTGA
*
77198038 CTTTTCGGCATTTCAG
1 CTTTTCGACATTTCAG
77198054 CTTTTCGACATTTCAG
1 CTTTTCGACATTTCAG
77198070 AATTTGTCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.44
Consensus pattern (16 bp):
CTTTTCGACATTTCAG
Found at i:77203128 original size:17 final size:19
Alignment explanation
Indices: 77203106--77203142 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
77203096 TTGGGCTTAT
77203106 TGGG-CCACATGGG-CGTG
1 TGGGCCCACATGGGCCGTG
77203123 TGGGCCCACATGGGCCGTG
1 TGGGCCCACATGGGCCGTG
77203142 T
1 T
77203143 TATGGGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 9 0.50
19 5 0.28
ACGTcount: A:0.11, C:0.27, G:0.43, T:0.19
Consensus pattern (19 bp):
TGGGCCCACATGGGCCGTG
Found at i:77203633 original size:33 final size:34
Alignment explanation
Indices: 77203563--77203637 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
77203553 TTTGCATTTA
77203563 TGATACTGTTACTATAATGAGCTAAGGCCCACAC
1 TGATACTGTTACTATAATGAGCTAAGGCCCACAC
* *
77203597 TGATACTGTTACTGTAATGGGCTAAGG-CCACAC
1 TGATACTGTTACTATAATGAGCTAAGGCCCACAC
77203630 TGATACTG
1 TGATACTG
77203638 GACTGTCACT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 14 0.36
34 25 0.64
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (34 bp):
TGATACTGTTACTATAATGAGCTAAGGCCCACAC
Found at i:77204697 original size:22 final size:24
Alignment explanation
Indices: 77204653--77204698 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
77204643 CACACTAGTA
*
77204653 TATGAGAGCCCCTTATGTGGGATG
1 TATGAGAGACCCTTATGTGGGATG
77204677 TATGAGA-ACCCTTA-GTGGGATG
1 TATGAGAGACCCTTATGTGGGATG
77204699 AATAGAAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 8 0.38
23 6 0.29
24 7 0.33
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.28
Consensus pattern (24 bp):
TATGAGAGACCCTTATGTGGGATG
Found at i:77204795 original size:26 final size:26
Alignment explanation
Indices: 77204731--77204859 Score: 132
Period size: 26 Copynumber: 4.8 Consensus size: 26
77204721 ATTACTGTAA
** **
77204731 ATGTGGAAGTCCATCAGGAGGATCTT
1 ATGTGGAAGTCCGCCAGGACTATCTT
* *
77204757 AAATGTGGTAGTCCGCCAGGACTCTCTT
1 --ATGTGGAAGTCCGCCAGGACTATCTT
77204785 ATGTGGAAGTCCGCCAGGACTATCTT
1 ATGTGGAAGTCCGCCAGGACTATCTT
* * *
77204811 ATGTGAAAGTCCACCAAGACTATCTT
1 ATGTGGAAGTCCGCCAGGACTATCTT
**
77204837 ATGTGGAAAGTTTGCCAGGACTA
1 ATGTGG-AAGTCCGCCAGGACTA
77204860 CTATTGTGAG
Statistics
Matches: 84, Mismatches: 16, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
26 52 0.62
27 12 0.14
28 20 0.24
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (26 bp):
ATGTGGAAGTCCGCCAGGACTATCTT
Found at i:77208804 original size:29 final size:29
Alignment explanation
Indices: 77208720--77208950 Score: 148
Period size: 29 Copynumber: 8.0 Consensus size: 29
77208710 ATCTCTGAAT
* * *
77208720 GGATGCTTTTATGACTATCTCTATTATAA
1 GGATGCTTTTGTGGCTATCTCTATTAAAA
* * * * * *
77208749 GGAAGCCTTTGAGG-TGACCTTTGTTAAAA
1 GGATGCTTTTGTGGCT-ATCTCTATTAAAA
* *
77208778 GGATGCTTTTGTGGCTATCTCAATTAAAT
1 GGATGCTTTTGTGGCTATCTCTATTAAAA
* *
77208807 GAATG-TCTTTGTGGCTATCTCTATGAAAA
1 GGATGCT-TTTGTGGCTATCTCTATTAAAA
* * * * *
77208836 GGAAGCCTATGTGGCTATCTTTGTTAAAA
1 GGATGCTTTTGTGGCTATCTCTATTAAAA
* * * *
77208865 GGAT-ATCTTGTGGTTATCTCTATCAAAA
1 GGATGCTTTTGTGGCTATCTCTATTAAAA
*
77208893 GGATGCCTTTTGTGGTTA-C-CTATTTCAAAA
1 GGATG-CTTTTGTGGCTATCTCTA-TT-AAAA
* * *
77208923 GGATGCCTTTGTGGCCATCTCTGTTAAA
1 GGATGCTTTTGTGGCTATCTCTATTAAA
77208951 GAAATGCTTT
Statistics
Matches: 148, Mismatches: 44, Indels: 20
0.70 0.21 0.09
Matches are distributed among these distances:
28 25 0.17
29 98 0.66
30 23 0.16
31 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (29 bp):
GGATGCTTTTGTGGCTATCTCTATTAAAA
Found at i:77208905 original size:87 final size:87
Alignment explanation
Indices: 77208720--77208950 Score: 216
Period size: 87 Copynumber: 2.7 Consensus size: 87
77208710 ATCTCTGAAT
* * * * * * *
77208720 GGATGCTTTTATGACTATCTCTATTATAAGGAAGCCTTTGAGG-TGACCTTTGTTAAAAGGATGC
1 GGATGCTTTTGTGGCTATCTCTATCAAAAGGAAGCCTTTGTGGCT-ATCTTTGTTAAAAGGATGA
* * *
77208784 TTTTGTGGCTATCTCAATTAAAT
65 TCTTGTGGCTATCTCAATCAAAA
* * *
77208807 GAATG-TCTTTGTGGCTATCTCTATGAAAAGGAAGCCTATGTGGCTATCTTTGTTAAAAGGAT-A
1 GGATGCT-TTTGTGGCTATCTCTATCAAAAGGAAGCCTTTGTGGCTATCTTTGTTAAAAGGATGA
* *
77208870 TCTTGTGGTTATCTCTATCAAAA
65 TCTTGTGGCTATCTCAATCAAAA
* * * * * * *
77208893 GGATGCCTTTTGTGGTTACCTATTTCAAAAGGATGCCTTTGTGGCCATCTCTGTTAAA
1 GGATG-CTTTTGTGGCTATCTCTATCAAAAGGAAGCCTTTGTGGCTATCTTTGTTAAA
77208951 GAAATGCTTT
Statistics
Matches: 116, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
86 23 0.20
87 91 0.78
88 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (87 bp):
GGATGCTTTTGTGGCTATCTCTATCAAAAGGAAGCCTTTGTGGCTATCTTTGTTAAAAGGATGAT
CTTGTGGCTATCTCAATCAAAA
Found at i:77215392 original size:25 final size:25
Alignment explanation
Indices: 77215364--77215413 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
77215354 CCTAATTCTT
77215364 CAAGAAATCAACAATGGTAACTTTC
1 CAAGAAATCAACAATGGTAACTTTC
77215389 CAAGAAATCAACAATGGTAACTTTC
1 CAAGAAATCAACAATGGTAACTTTC
77215414 TAAAGATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (25 bp):
CAAGAAATCAACAATGGTAACTTTC
Found at i:77215426 original size:25 final size:25
Alignment explanation
Indices: 77215365--77215419 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
77215355 CTAATTCTTC
*
77215365 AAGAAATCAACAATGGTAACTTTCC
1 AAGAAATCAACAATGGTAACTTTCA
77215390 AAGAAATCAACAATGGTAACTTTCTA
1 AAGAAATCAACAATGGTAACTTTC-A
77215416 AAGA
1 AAGA
77215420 TTTAACAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 24 0.86
26 4 0.14
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (25 bp):
AAGAAATCAACAATGGTAACTTTCA
Found at i:77215660 original size:24 final size:24
Alignment explanation
Indices: 77215633--77215704 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
77215623 CTATTTATAC
* *
77215633 TTTAGATTAACTTTATTAATTTAG
1 TTTAGATTAACTTAATTAATTTAA
77215657 TTTA-ACTTAACTTAATTAATTTAA
1 TTTAGA-TTAACTTAATTAATTTAA
*
77215681 TTTAG-TTAA-TTAAGATAATTTAA
1 TTTAGATTAACTTAA-TTAATTTAA
77215704 T
1 T
77215705 ATTATTAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
22 4 0.10
23 14 0.33
24 24 0.57
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (24 bp):
TTTAGATTAACTTAATTAATTTAA
Found at i:77215661 original size:19 final size:20
Alignment explanation
Indices: 77215633--77215691 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 20
77215623 CTATTTATAC
*
77215633 TTTAGATTAACTTTA-TTAA
1 TTTAGTTTAACTTTACTTAA
*
77215652 TTTAGTTTAACTTAACTTAA
1 TTTAGTTTAACTTTACTTAA
* *
77215672 -TTAATTTAA-TTTAGTTAA
1 TTTAGTTTAACTTTACTTAA
77215690 TT
1 TT
77215692 AAGATAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
18 7 0.21
19 22 0.67
20 4 0.12
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
TTTAGTTTAACTTTACTTAA
Found at i:77215699 original size:18 final size:18
Alignment explanation
Indices: 77215668--77215702 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
77215658 TTAACTTAAC
**
77215668 TTAATTAATTTAATTTAG
1 TTAATTAAGATAATTTAG
77215686 TTAATTAAGATAATTTA
1 TTAATTAAGATAATTTA
77215703 ATATTATTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (18 bp):
TTAATTAAGATAATTTAG
Found at i:77221343 original size:66 final size:66
Alignment explanation
Indices: 77221268--77221463 Score: 261
Period size: 66 Copynumber: 3.0 Consensus size: 66
77221258 ATGAACTTGG
* * * *
77221268 CTATGGCAACATGTGGAGTTCGCTAGGACATTAAAGATTGGGTACATGTGTAAG-CCTTTAGCTC
1 CTATGGCAACATGTGGAGTCCGCCAGGACATTAAACATGGGGTACATGTGTAAGACC-TTAGCTC
77221332 GA
65 GA
*
77221334 CTATGGCAACGA-GTGGAGTCCACCAGGACATTAAACATGGGGTACATGTGTAAGACCTTAGCTC
1 CTATGGCAAC-ATGTGGAGTCCGCCAGGACATTAAACATGGGGTACATGTGTAAGACCTTAGCTC
77221398 GA
65 GA
** ** *
77221400 CTATGGCAATGTGTGGAGTCCGCCAGGACATTAAACATGGGGTTATGTGTGTAAGACCATAGCT
1 CTATGGCAACATGTGGAGTCCGCCAGGACATTAAACATGGGG-TACATGTGTAAGACCTTAGCT
77221464 TGGCTATGTT
Statistics
Matches: 115, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
66 94 0.82
67 21 0.18
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (66 bp):
CTATGGCAACATGTGGAGTCCGCCAGGACATTAAACATGGGGTACATGTGTAAGACCTTAGCTCG
A
Found at i:77221486 original size:67 final size:66
Alignment explanation
Indices: 77221268--77221488 Score: 230
Period size: 66 Copynumber: 3.3 Consensus size: 66
77221258 ATGAACTTGG
* * * * * *
77221268 CTATGGCAACATGTGGAGTTCGCTAGGACATTAAAGATTGGGTACATGTGTAAG-CCTTTAGCTC
1 CTATGGCAACATGTAGAGTCCGCCAGGACATTAAACATGGGGTACATGTGTAAGACC-ATAGCTC
77221332 GA
65 GA
* * *
77221334 CTATGGCAACGA-GTGGAGTCCACCAGGACATTAAACATGGGGTACATGTGTAAGACCTTAGCTC
1 CTATGGCAAC-ATGTAGAGTCCGCCAGGACATTAAACATGGGGTACATGTGTAAGACCATAGCTC
77221398 GA
65 GA
** * ** *
77221400 CTATGGCAATGTGTGGAGTCCGCCAGGACATTAAACATGGGGTTATGTGTGTAAGACCATAGCTT
1 CTATGGCAACATGTAGAGTCCGCCAGGACATTAAACATGGGG-TACATGTGTAAGACCATAGCTC
*
77221465 GG
65 GA
** *
77221467 CTATGTTAGCATGTAGAGTCCG
1 CTATGGCAACATGTAGAGTCCG
77221489 TAAATCAATA
Statistics
Matches: 132, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
66 94 0.71
67 38 0.29
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (66 bp):
CTATGGCAACATGTAGAGTCCGCCAGGACATTAAACATGGGGTACATGTGTAAGACCATAGCTCG
A
Found at i:77222273 original size:18 final size:18
Alignment explanation
Indices: 77222246--77222292 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
77222236 TGAGGGTACT
*
77222246 AGAAAGGGACCTTATTCA
1 AGAAAAGGACCTTATTCA
* *
77222264 AGAAATGGACCTTATTTA
1 AGAAAAGGACCTTATTCA
77222282 AGAAAAGGACC
1 AGAAAAGGACC
77222293 AAGCATAGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (18 bp):
AGAAAAGGACCTTATTCA
Found at i:77223856 original size:17 final size:18
Alignment explanation
Indices: 77223834--77223870 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
77223824 ATGTTTGAAT
77223834 TGGTGTTGGA-TTACATG
1 TGGTGTTGGACTTACATG
*
77223851 TGGTGTTGGACTTATATG
1 TGGTGTTGGACTTACATG
77223869 TG
1 TG
77223871 CTCCTACGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.16, C:0.05, G:0.35, T:0.43
Consensus pattern (18 bp):
TGGTGTTGGACTTACATG
Found at i:77226421 original size:58 final size:58
Alignment explanation
Indices: 77226359--77226469 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
77226349 ATCTTTCATC
* * *
77226359 TAACATATGCTCAGAAAAAGCTCA-ATTAGGATTACCTGTCCGGGCTAAATCCTAATTG
1 TAACATATGCTC-GAAAAAGATCATATCAGGATTACCCGTCCGGGCTAAATCCTAATTG
* * *
77226417 TAACATATGCTCGAGAGAGATTATATCAGGATTACCCGTCCGGGCTAAATCCT
1 TAACATATGCTCGAAAAAGATCATATCAGGATTACCCGTCCGGGCTAAATCCT
77226470 TTCTATAATG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
57 7 0.15
58 39 0.85
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (58 bp):
TAACATATGCTCGAAAAAGATCATATCAGGATTACCCGTCCGGGCTAAATCCTAATTG
Found at i:77230402 original size:49 final size:47
Alignment explanation
Indices: 77230342--77231031 Score: 1100
Period size: 49 Copynumber: 14.6 Consensus size: 47
77230332 GATAATTGTG
* * *
77230342 ATGTGAATGTATATATATGTGACAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77230389 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77230436 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77230485 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77230534 ATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77230580 ATGTGAAAGTG-ATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77230626 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77230675 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77230722 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77230769 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77230818 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77230867 ATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77230913 ATGTGAAAGTGTATATATGTGATGAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
77230959 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77231006 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
77231032 TCCCGAAGGG
Statistics
Matches: 607, Mismatches: 27, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
45 20 0.03
46 133 0.22
47 222 0.37
49 232 0.38
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77230956 original size:333 final size:331
Alignment explanation
Indices: 77230342--77231031 Score: 1220
Period size: 333 Copynumber: 2.1 Consensus size: 331
77230332 GATAATTGTG
* * *
77230342 ATGTGAATGTATATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
77230407 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
77230472 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
131 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
77230537 TGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGATATATGTGAT
196 TGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGATATATGTGAT
* * *
77230602 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
261 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATGGCCAA
*
77230667 TGTGATGA
324 CGTGATGA
77230675 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
77230740 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
77230805 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
131 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
77230870 TGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
196 TGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTG-ATATATGTGA
* * * * *
77230935 TGAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
260 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAAC
*
77230999 GTGATGG
325 GTGATGA
*
77231006 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
77231032 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
331 54 0.16
333 269 0.79
334 19 0.06
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (331 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
TGAAAGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGATATATGTGAT
AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACG
TGATGA
Found at i:77233914 original size:17 final size:18
Alignment explanation
Indices: 77233892--77233928 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
77233882 ATGTTTGAAT
77233892 TGGTGTTGGA-TTACATG
1 TGGTGTTGGACTTACATG
*
77233909 TGGTGTTGGACTTATATG
1 TGGTGTTGGACTTACATG
77233927 TG
1 TG
77233929 CTCCTACGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.16, C:0.05, G:0.35, T:0.43
Consensus pattern (18 bp):
TGGTGTTGGACTTACATG
Found at i:77236476 original size:58 final size:57
Alignment explanation
Indices: 77236414--77236523 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
77236404 ATCTTTCATC
* * *
77236414 TAACATATGCTCAGAAAAAGCTCA-ATTAGGATTACCTGTCCGGGCTAAATCCTAATTG
1 TAACATATGCTC-GAAAAAGATCATATCAGGATTACCCGTCC-GGCTAAATCCTAATTG
* * *
77236472 TAACATATGCTCGAGAGAGATTATATCAGGATTACCCGTCCGGCTAAATCCT
1 TAACATATGCTCGAAAAAGATCATATCAGGATTACCCGTCCGGCTAAATCCT
77236524 TTCTATAATG
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
57 18 0.40
58 27 0.60
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (57 bp):
TAACATATGCTCGAAAAAGATCATATCAGGATTACCCGTCCGGCTAAATCCTAATTG
Found at i:77240440 original size:47 final size:47
Alignment explanation
Indices: 77240388--77241078 Score: 1150
Period size: 47 Copynumber: 14.6 Consensus size: 47
77240378 GATAATTGTG
* *
77240388 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77240435 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77240482 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77240529 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77240578 ATGTGAAAGTATATATATGTGATAAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77240624 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77240671 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77240720 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77240767 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77240814 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77240863 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77240912 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77240959 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
77241006 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77241053 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
77241079 TCCCGAAGGG
Statistics
Matches: 611, Mismatches: 26, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
46 44 0.07
47 380 0.62
49 187 0.31
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77240495 original size:96 final size:96
Alignment explanation
Indices: 77240388--77241078 Score: 1138
Period size: 96 Copynumber: 7.3 Consensus size: 96
77240378 GATAATTGTG
77240388 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
77240451 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
77240482 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
77240545 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
77240578 ATGTGAAA--GTATATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
77240640 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
77240671 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
77240736 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77240767 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
77240830 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
77240863 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
77240928 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77240959 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
77241022 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
77241053 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
77241079 TCCCGAAGGG
Statistics
Matches: 565, Mismatches: 17, Indels: 30
0.92 0.03 0.05
Matches are distributed among these distances:
93 43 0.08
94 193 0.34
95 52 0.09
96 231 0.41
98 46 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77240504 original size:143 final size:143
Alignment explanation
Indices: 77240388--77241078 Score: 1176
Period size: 143 Copynumber: 4.9 Consensus size: 143
77240378 GATAATTGTG
77240388 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
77240451 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
77240516 GCCGATGTGATGA
131 GCCAATGTGATGA
*
77240529 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
77240594 ATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
77240658 GCCGATGTGATGA
131 GCCAATGTGATGA
77240671 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
77240736 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
77240801 GCCAATGTGATGA
131 GCCAATGTGATGA
77240814 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
77240879 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* *
77240944 TAGCCGATGTGATGA
129 TGGCCAATGTGATGA
*
77240959 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * *
77241022 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
77241079 TCCCGAAGGG
Statistics
Matches: 527, Mismatches: 18, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
141 59 0.11
142 141 0.27
143 235 0.45
145 92 0.17
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCAATGTGATGA
Found at i:77243435 original size:39 final size:40
Alignment explanation
Indices: 77243299--77243691 Score: 570
Period size: 39 Copynumber: 10.1 Consensus size: 40
77243289 AAGGTTCGAC
*
77243299 GATG-ATCC-GGCTAAGT-CCGAAGAGCA-TCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
77243335 GATGTATCC-GGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
77243374 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
77243414 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
77243453 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
77243492 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
77243531 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
77243571 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
77243611 GATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
77243650 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
77243690 GA
1 GA
77243692 CGTGTATTCG
Statistics
Matches: 329, Mismatches: 21, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
36 4 0.01
37 12 0.04
38 10 0.03
39 166 0.50
40 137 0.42
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:77243436 original size:79 final size:80
Alignment explanation
Indices: 77243299--77243691 Score: 579
Period size: 79 Copynumber: 5.0 Consensus size: 80
77243289 AAGGTTCGAC
77243299 GATG-ATCC-GGCTAAGT-CCGAAGAGCA-TCGTGCTAGTGATGTATCC-GGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
77243359 AGCATTCATGCTAGT
66 AGCATTCATGCTAGT
* *
77243374 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA-CCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
77243438 AGCATTCATGCTAGT
66 AGCATTCATGCTAGT
*
77243453 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
*
77243516 AGCATTCGTGCTAGT
66 AGCATTCATGCTAGT
* * *
77243531 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
*
77243596 AGCATTCGTGCTAGT
66 AGCATTCATGCTAGT
* * * * * * *
77243611 GATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
*
77243675 AGCAATCATGCTAGT
66 AGCATTCATGCTAGT
77243690 GA
1 GA
77243692 CGTGTATTCG
Statistics
Matches: 291, Mismatches: 19, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
75 4 0.01
76 3 0.01
77 8 0.03
78 77 0.26
79 164 0.56
80 35 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
AGCATTCATGCTAGT
Found at i:77247117 original size:47 final size:47
Alignment explanation
Indices: 77247066--77247759 Score: 1100
Period size: 47 Copynumber: 14.6 Consensus size: 47
77247056 GATAATTGTG
* * *
77247066 ATGTGAATGTATATATATGTGACAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77247113 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77247160 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77247209 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77247258 ATGTGAAAGTGTATAAATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
77247305 ATGTGAAAGTGAATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77247352 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77247401 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77247448 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77247495 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77247544 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77247593 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77247640 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
77247687 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77247734 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
77247760 TCCCGAAGGG
Statistics
Matches: 606, Mismatches: 35, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 374 0.62
49 232 0.38
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77247213 original size:143 final size:144
Alignment explanation
Indices: 77247066--77247759 Score: 1134
Period size: 143 Copynumber: 4.9 Consensus size: 144
77247056 GATAATTGTG
*
77247066 ATGTG-AA-TGTATATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
77247129 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCGAA
*
77247194 TGGCCGATGTGATGA
130 TGGCCAATGTGATGA
*
77247209 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
77247274 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGA-ATATATGTGATAAGGCCGAAT
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAAT
77247338 GGCCAATGTGATGA
131 GGCCAATGTGATGA
77247352 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
77247417 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAAT
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAAT
77247481 GGCCAATGTGATGA
131 GGCCAATGTGATGA
77247495 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
77247560 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGA
* *
77247624 ATAGCCGATGTGATGA
129 ATGGCCAATGTGATGA
*
77247640 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * *
77247703 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG-TATAAATGTGATAAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
77247760 TCCCGAAGGG
Statistics
Matches: 525, Mismatches: 21, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
141 54 0.10
143 284 0.54
144 3 0.01
145 184 0.35
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (144 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAAT
GGCCAATGTGATGA
Found at i:77247301 original size:192 final size:190
Alignment explanation
Indices: 77247066--77247759 Score: 1185
Period size: 192 Copynumber: 3.6 Consensus size: 190
77247056 GATAATTGTG
* * *
77247066 ATGTGAATGTATATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
77247131 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
77247196 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
77247258 ATGTGAAAGTGTATAAATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGAATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
77247323 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
77247388 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77247448 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
* *
77247513 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
64 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
77247578 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
129 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77247640 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
77247705 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
77247760 TCCCGAAGGG
Statistics
Matches: 476, Mismatches: 24, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
188 10 0.02
189 1 0.00
190 134 0.28
192 331 0.70
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (190 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77258267 original size:35 final size:35
Alignment explanation
Indices: 77258228--77258300 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
77258218 GCTAGACACA
77258228 ATTTGACGCATCACCATCCTAAACATCTTTTAGCC
1 ATTTGACGCATCACCATCCTAAACATCTTTTAGCC
77258263 ATTTGACGCATCACCATCCTAAACATCTTTTAGCC
1 ATTTGACGCATCACCATCCTAAACATCTTTTAGCC
77258298 ATT
1 ATT
77258301 GTCGTAACAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (35 bp):
ATTTGACGCATCACCATCCTAAACATCTTTTAGCC
Found at i:77260315 original size:26 final size:24
Alignment explanation
Indices: 77260286--77260334 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
77260276 ATAAAAAAAG
*
77260286 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
77260312 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
77260335 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:77260354 original size:21 final size:21
Alignment explanation
Indices: 77260305--77260363 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
77260295 ATAATAAATC
*
77260305 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
77260325 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
77260347 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
77260364 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:77260440 original size:15 final size:16
Alignment explanation
Indices: 77260410--77260442 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
77260400 AAATAGTTAT
77260410 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
77260427 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
77260442 A
1 A
77260443 AAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:77262478 original size:19 final size:19
Alignment explanation
Indices: 77262432--77262479 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
77262422 GTATATATTT
77262432 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
77262450 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
77262469 TAAGTTTTATT
1 TAAATTTTATT
77262480 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:77262555 original size:42 final size:42
Alignment explanation
Indices: 77262496--77262580 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
77262486 CTAGGAATAT
* *
77262496 TTTTATTTTATCTTTTAGTAGTTTATTAGAGTAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
* *
77262538 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGAGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
77262580 T
1 T
77262581 CTTCCCAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
Found at i:77267191 original size:19 final size:19
Alignment explanation
Indices: 77267145--77267192 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
77267135 GTATATATTT
77267145 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
77267163 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
77267182 TAAGTTTTATT
1 TAAATTTTATT
77267193 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:77267268 original size:42 final size:42
Alignment explanation
Indices: 77267209--77267293 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
77267199 CTAGGAATAT
77267209 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
* *
77267251 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
77267293 T
1 T
77267294 CTTCCCAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
Found at i:77276410 original size:42 final size:45
Alignment explanation
Indices: 77276285--77276452 Score: 105
Period size: 48 Copynumber: 3.6 Consensus size: 45
77276275 ATGCCAACGT
* * * * *
77276285 CATATCCCAAATATGGTCTTACATGAGATCACCA-CTCGATGCCAATGC
1 CATACCCCAGATATGGTCTTACA-GGGATCA-CATATCGATACC-A-GC
** * *
77276333 CATGTCCCAGACATGGTCTTACATGGGATCTCATATC-A-A-C-GC
1 CATACCCCAGATATGGTCTTACA-GGGATCACATATCGATACCAGC
77276375 CATACCCCAGATATGGTCTTACA-GGATAACACATATCGATACCGATGC
1 CATACCCCAGATATGGTCTTACAGGGAT--CACATATCGATACC-A-GC
* *
77276423 CATATCCCAGATATGGTCTTATACGGGATC
1 CATACCCCAGATATGGTCTTACA-GGGATC
77276453 TTGTTAACCC
Statistics
Matches: 96, Mismatches: 13, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
40 4 0.04
42 29 0.30
43 1 0.01
44 1 0.01
45 2 0.02
47 3 0.03
48 52 0.54
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (45 bp):
CATACCCCAGATATGGTCTTACAGGGATCACATATCGATACCAGC
Found at i:77276432 original size:90 final size:90
Alignment explanation
Indices: 77276279--77276453 Score: 219
Period size: 90 Copynumber: 1.9 Consensus size: 90
77276269 AATAAGATGC
* * * * * *
77276279 CAACGTCATATCCCAAATATGGTCTTACATGAGATCACCACTCGATGCCAATGCCATGTCCCAGA
1 CAACGCCATACCCCAAATATGGTCTTACATGAGATAACCAATCGATACCAATGCCATATCCCAGA
*
77276344 CATGGTCTTACATGGGATCTCATAT
66 CATGGTCTTACACGGGATCTCATAT
* *
77276369 CAACGCCATACCCCAGATATGGTCTTACA-G-GATAACACATATCGATACCGATGCCATATCCCA
1 CAACGCCATACCCCAAATATGGTCTTACATGAGATAAC-CA-ATCGATACCAATGCCATATCCCA
* *
77276432 GATATGGTCTTATACGGGATCT
64 GACATGGTCTTACACGGGATCT
77276454 TGTTAACCCG
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
88 5 0.07
89 3 0.04
90 64 0.89
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (90 bp):
CAACGCCATACCCCAAATATGGTCTTACATGAGATAACCAATCGATACCAATGCCATATCCCAGA
CATGGTCTTACACGGGATCTCATAT
Found at i:77279633 original size:46 final size:46
Alignment explanation
Indices: 77279580--77279673 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
77279570 TTCAAATGTT
77279580 ATTGATTTATGCTACGCATTGTATTGTGTTGTATTTAGACCTGCTC
1 ATTGATTTATGCTACGCATTGTATTGTGTTGTATTTAGACCTGCTC
77279626 ATTGATTTATGCTACGCATTGTATTGTGTTGTATTTAGACCTGCTC
1 ATTGATTTATGCTACGCATTGTATTGTGTTGTATTTAGACCTGCTC
77279672 AT
1 AT
77279674 AGGTCGGGCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.46
Consensus pattern (46 bp):
ATTGATTTATGCTACGCATTGTATTGTGTTGTATTTAGACCTGCTC
Found at i:77280030 original size:30 final size:30
Alignment explanation
Indices: 77279987--77280045 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
77279977 TATTTTATTA
*
77279987 TTAATTATGTTATTATTTTAAAGGAATTTG
1 TTAATTATATTATTATTTTAAAGGAATTTG
* * *
77280017 TTAATTTTATTATTATTTTAGAGGTATTT
1 TTAATTATATTATTATTTTAAAGGAATTT
77280046 ACTTGTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58
Consensus pattern (30 bp):
TTAATTATATTATTATTTTAAAGGAATTTG
Found at i:77281657 original size:2 final size:2
Alignment explanation
Indices: 77281650--77281686 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
77281640 CATTGCTAAG
77281650 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
77281687 TATATATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:77283151 original size:134 final size:133
Alignment explanation
Indices: 77282825--77283285 Score: 419
Period size: 131 Copynumber: 3.5 Consensus size: 133
77282815 AAAAGCACAG
* * * *
77282825 CCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAACATCGCCTTTGTTTTAAAGGGT
1 CCCAGCACGATAGGGCACGATTCCCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGGAT
* * ** * *
77282890 TTTCTTAAAAAACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAA-CAAACGAGAAATC
66 TTTTTTAAAAGACATGAGTGAAATTCTAAAGGAATATTCGATTATTTT-AAGCAAACGAGAAATT
*
77282954 ACAA
130 GCAA
* * * * * * * ** *
77282958 CCTAGTACGATAGGGCATGATTCCCAAATTGTCGAACT-CCGAGTATTGCCTTCGTTTTAAAGGA
1 CCCAGCACGATAGGGCACGATTCCCGAATTG-CCAAATATCGAACATCGCCTTCGTTTTAAAGGA
* * * * * *
77283022 TTTTTTTTAGAAGACATGACTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAAACGAGAAAT
65 -TTTTTTTAAAAGACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTAAGCAAACGAGAAAT
77283087 TGCAA
129 TGCAA
* * *
77283092 CCCAGCACGTTAGGGCACGATTCCGTGAATTGCCAAATATCGCACATCGCCTTCG-TTT-AAGGA
1 CCCAGCACGATAGGGCACGATTCC-CGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGGA
* * * * ** * * *
77283155 -ATTTTTAAAAGATATGGGTAAAATTCTAAAGGAACCTTCGATTACTTTGAGCAAATGAGAAATT
65 TTTTTTTAAAAGACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTAAGCAAACGAGAAATT
77283219 GCAA
130 GCAA
* * * * * * **
77283223 TCCAACACGTTAGGGCACAATTCCGCGAAATACCAAATATCGAATGTCGCCTTCGTTTTAAAG
1 CCCAGCACGATAGGGCACGATTCC-CGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAG
77283286 AATTCTTAAT
Statistics
Matches: 257, Mismatches: 64, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
131 99 0.39
132 3 0.01
133 56 0.22
134 83 0.32
135 16 0.06
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (133 bp):
CCCAGCACGATAGGGCACGATTCCCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGGAT
TTTTTTAAAAGACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTAAGCAAACGAGAAATTG
CAA
Found at i:77285889 original size:18 final size:19
Alignment explanation
Indices: 77285863--77285903 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
77285853 GTTTGGTTTA
* *
77285863 ATTTTTTTATTTTTTAT-T
1 ATTTATTTATTTTGTATAT
77285881 ATTTATTTATTTTGTATAT
1 ATTTATTTATTTTGTATAT
77285900 ATTT
1 ATTT
77285904 TGGTTTCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (19 bp):
ATTTATTTATTTTGTATAT
Found at i:77290196 original size:393 final size:393
Alignment explanation
Indices: 77289461--77290233 Score: 1411
Period size: 393 Copynumber: 2.0 Consensus size: 393
77289451 GAAAATGGGG
*
77289461 GATGGGATGAATTATGATCATGAGACTATAGTAAATTTACATTTAATCATGTTATATTATTTGAA
1 GATGGAATGAATTATGATCATGAGACTATAGTAAATTTACATTTAATCATGTTATATTATTTGAA
*
77289526 TGTTATATGTATGGTAAGGTTGCTTATTTCTTGCATACGAGCTTACTAAGATATATAGCTTACTC
66 CGTTATATGTATGGTAAGGTTGCTTATTTCTTGCATACGAGCTTACTAAGATATATAGCTTACTC
* *
77289591 CGTTTATTTTCCATGTTTTATAGTACAGCCAAGCTAACTTAGATTAGAGATTGTCGAAGATTCGA
131 CGTTTATTTTCCATGTTTTATAGTACAGCCAAGCTAACTCAGATCAGAGATTGTCGAAGATTCGA
*
77289656 ATCACACTATTAAACTTTCATTTTGGGTAATTATGATCTTAGTATTTTGAAAGTATGGCATGTAT
196 ATCACACTATCAAACTTTCATTTTGGGTAATTATGATCTTAGTATTTTGAAAGTATGGCATGTAT
* *
77289721 AGGAACTTGGTCATTTTGTTATATGTGTTATTATGATTTTAGCCAAAGTATTGGCTTGTAATTTA
261 AGGAACTTGGTCATTTTGTTATATGTGTCATTATGATTTTAGCCAAAGTATTGGCTTGTAATGTA
*
77289786 TCAAAGGCTTTATTTGATATTTGGCCATGTAAATTGGCTTATTTTGGCTAACATGAGGTAAGTTT
326 TCAAAGGCTTGATTTGATATTTGGCCATGTAAATTGGCTTATTTTGGCTAACATGAGGTAAGTTT
77289851 GGT
391 GGT
77289854 GATGGAATGAATTATGATCATGAGACTATAGTAAATTTACATTTAATCATGTTATATTATTTGAA
1 GATGGAATGAATTATGATCATGAGACTATAGTAAATTTACATTTAATCATGTTATATTATTTGAA
* *
77289919 CGTTATATGTATGGTAAGGTTGCTTATTTCTTGCATACGAGCTTACTAAGCTATATAGCTTACTT
66 CGTTATATGTATGGTAAGGTTGCTTATTTCTTGCATACGAGCTTACTAAGATATATAGCTTACTC
* * * *
77289984 CGTTTATTTTCCATGTTTTATAGTACTGCCAAGCTAACTCAGATCGGAGATTTTCGGAGATTCGA
131 CGTTTATTTTCCATGTTTTATAGTACAGCCAAGCTAACTCAGATCAGAGATTGTCGAAGATTCGA
77290049 ATCACACTATCAAACTTTCATTTTGGGTAATTATGATCTTAGTATTTTGAAAGTATGGCATGTAT
196 ATCACACTATCAAACTTTCATTTTGGGTAATTATGATCTTAGTATTTTGAAAGTATGGCATGTAT
*
77290114 AGGAACTTGGTCATTTTGTTATATGTGTCATTATGATTTTATCCAAAGTATTGGCTTGTAATGTA
261 AGGAACTTGGTCATTTTGTTATATGTGTCATTATGATTTTAGCCAAAGTATTGGCTTGTAATGTA
77290179 TCAAAGGCTTGATTTGATATTTGGCCATGTAAATTGGCTTATTTTGGCTAACATG
326 TCAAAGGCTTGATTTGATATTTGGCCATGTAAATTGGCTTATTTTGGCTAACATG
77290234 GTTGTAAGCT
Statistics
Matches: 365, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
393 365 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.41
Consensus pattern (393 bp):
GATGGAATGAATTATGATCATGAGACTATAGTAAATTTACATTTAATCATGTTATATTATTTGAA
CGTTATATGTATGGTAAGGTTGCTTATTTCTTGCATACGAGCTTACTAAGATATATAGCTTACTC
CGTTTATTTTCCATGTTTTATAGTACAGCCAAGCTAACTCAGATCAGAGATTGTCGAAGATTCGA
ATCACACTATCAAACTTTCATTTTGGGTAATTATGATCTTAGTATTTTGAAAGTATGGCATGTAT
AGGAACTTGGTCATTTTGTTATATGTGTCATTATGATTTTAGCCAAAGTATTGGCTTGTAATGTA
TCAAAGGCTTGATTTGATATTTGGCCATGTAAATTGGCTTATTTTGGCTAACATGAGGTAAGTTT
GGT
Found at i:77296744 original size:46 final size:45
Alignment explanation
Indices: 77296691--77296866 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
77296681 TATTTGGGCA
77296691 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
77296737 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
77296784 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
77296830 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77296867 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:77296846 original size:93 final size:93
Alignment explanation
Indices: 77296687--77296858 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
77296677 AGAATATTTG
* * *
77296687 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
77296752 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
77296780 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
77296845 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
77296859 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:77301190 original size:24 final size:23
Alignment explanation
Indices: 77301146--77301195 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
77301136 ATATAAAATA
* *
77301146 AAAATATTTATGGAGTTATTATG
1 AAAATATTTATGAAGTTATTAAG
77301169 AAAATATTT-TGAAGTTCGATTAAG
1 AAAATATTTATGAAGTT--ATTAAG
77301193 AAA
1 AAA
77301196 TTTAACCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 6 0.26
23 9 0.39
24 8 0.35
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.38
Consensus pattern (23 bp):
AAAATATTTATGAAGTTATTAAG
Found at i:77302472 original size:30 final size:31
Alignment explanation
Indices: 77302427--77302486 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
77302417 AAAATGTAAA
*
77302427 TGATTACAGGGTATGAAAATGCAAATAAGAG
1 TGATTACAGGGTATGAAAATGAAAATAAGAG
*
77302458 TGATTACA-GGTATGATAATGAAAATAAGA
1 TGATTACAGGGTATGAAAATGAAAATAAGA
77302487 ATATTGATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.47, C:0.05, G:0.23, T:0.25
Consensus pattern (31 bp):
TGATTACAGGGTATGAAAATGAAAATAAGAG
Found at i:77311419 original size:64 final size:64
Alignment explanation
Indices: 77311340--77311469 Score: 251
Period size: 64 Copynumber: 2.0 Consensus size: 64
77311330 TGGGTTAGTA
*
77311340 AGTGCTTCCTGAATATCAACTTCTTTTACGAGCTAACTCAAAATCAACTCGTTCCTAGAACTCC
1 AGTGCTTCCTGAATATCAACTTCTTTTACGAGCTAACTCAAAATCAACCCGTTCCTAGAACTCC
77311404 AGTGCTTCCTGAATATCAACTTCTTTTACGAGCTAACTCAAAATCAACCCGTTCCTAGAACTCC
1 AGTGCTTCCTGAATATCAACTTCTTTTACGAGCTAACTCAAAATCAACCCGTTCCTAGAACTCC
77311468 AG
1 AG
77311470 AAGTTGGGTA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (64 bp):
AGTGCTTCCTGAATATCAACTTCTTTTACGAGCTAACTCAAAATCAACCCGTTCCTAGAACTCC
Found at i:77312659 original size:18 final size:18
Alignment explanation
Indices: 77312618--77312670 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
77312608 AACTAGTTTA
*
77312618 TTTT-TTTCTTATATTTT
1 TTTTCTTTCTTAAATTTT
* *
77312635 GTCTCTTTCTTAAATTTT
1 TTTTCTTTCTTAAATTTT
* *
77312653 TTTTCTTTTTTAAGTTTT
1 TTTTCTTTCTTAAATTTT
77312671 ATATTATTTA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.74
Consensus pattern (18 bp):
TTTTCTTTCTTAAATTTT
Found at i:77312689 original size:18 final size:18
Alignment explanation
Indices: 77312668--77312714 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
77312658 TTTTTTAAGT
77312668 TTTATATTATTTACTTAA
1 TTTATATTATTTACTTAA
* * *
77312686 TTTATTTTACTTATTTAA
1 TTTATATTATTTACTTAA
77312704 TTTATATTATT
1 TTTATATTATT
77312715 AATTTTAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTATATTATTTACTTAA
Found at i:77312773 original size:21 final size:23
Alignment explanation
Indices: 77312744--77312787 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
77312734 TATATATTTA
77312744 AAATGTTTTATAA-TATT-TTTTT
1 AAATGTTTT-TAATTATTATTTTT
77312766 AAAT-TTTTTAATTATTATTTTT
1 AAATGTTTTTAATTATTATTTTT
77312788 TAAAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 3 0.15
21 8 0.40
22 9 0.45
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
AAATGTTTTTAATTATTATTTTT
Found at i:77312888 original size:36 final size:37
Alignment explanation
Indices: 77312819--77312888 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 37
77312809 TATATTTGTG
**
77312819 AAATTAATTATTTATAAATTTTAAAAATGTAATTTTC
1 AAATTAATTATTTATAAATTTTAAAAAAATAATTTTC
*
77312856 AAATTAATTTTTTA-AAATTTTAAAAAAATAATT
1 AAATTAATTATTTATAAATTTTAAAAAAATAATT
77312889 ATTTTTTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
36 17 0.57
37 13 0.43
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (37 bp):
AAATTAATTATTTATAAATTTTAAAAAAATAATTTTC
Found at i:77312941 original size:17 final size:17
Alignment explanation
Indices: 77312921--77312967 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
77312911 TGAAGTCTAA
77312921 TTTTTTTCTTATTTTAT
1 TTTTTTTCTTATTTTAT
77312938 TTTTTTATC-TATTTTAT
1 TTTTTT-TCTTATTTTAT
*
77312955 TTATTTTTATTAT
1 TT-TTTTTCTTAT
77312968 ACATTTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTTCTTATTTTAT
Found at i:77313161 original size:5 final size:5
Alignment explanation
Indices: 77313151--77313177 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
77313141 AATTTTTCTG
77313151 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
77313178 TTTATTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:77313327 original size:21 final size:22
Alignment explanation
Indices: 77313302--77313343 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
77313292 TATATTTCTC
77313302 AAATTAATTTTTGAAA-ATTAT
1 AAATTAATTTTTGAAATATTAT
* *
77313323 AAATTTATTTTTTAAATATTA
1 AAATTAATTTTTGAAATATTA
77313344 ACCATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
AAATTAATTTTTGAAATATTAT
Found at i:77313565 original size:10 final size:9
Alignment explanation
Indices: 77313547--77313659 Score: 68
Period size: 10 Copynumber: 11.8 Consensus size: 9
77313537 TAAAATTTAA
77313547 AAAATATTT
1 AAAATATTT
77313556 AAAATCATTT
1 AAAAT-ATTT
*
77313566 AAAATATTAA
1 AAAATATT-T
77313576 AAAATATTT
1 AAAATATTT
*
77313585 TAAATCATTT
1 AAAAT-ATTT
*
77313595 TAAATCATTT
1 AAAAT-ATTT
* *
77313605 TAAATGTTTT
1 AAAAT-ATTT
* *
77313615 ATAATATTAA
1 AAAATATT-T
77313625 AAAATATTT
1 AAAATATTT
77313634 --AATATTT
1 AAAATATTT
77313641 AAAAATAATTT
1 -AAAAT-ATTT
77313652 GAAAATAT
1 -AAAATAT
77313660 ATTTTTAATA
Statistics
Matches: 84, Mismatches: 12, Indels: 15
0.76 0.11 0.14
Matches are distributed among these distances:
7 7 0.08
9 14 0.17
10 54 0.64
11 9 0.11
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (9 bp):
AAAATATTT
Found at i:77313609 original size:29 final size:29
Alignment explanation
Indices: 77313537--77313599 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
77313527 AAATTCTATG
*
77313537 TAAAAT-TTAAAAAATATTTAAAATCATT
1 TAAAATATTAAAAAATATTTTAAATCATT
77313565 TAAAATATTAAAAAATATTTTAAATCATT
1 TAAAATATTAAAAAATATTTTAAATCATT
*
77313594 TTAAAT
1 TAAAAT
77313600 CATTTTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (29 bp):
TAAAATATTAAAAAATATTTTAAATCATT
Found at i:77313662 original size:30 final size:32
Alignment explanation
Indices: 77313615--77313685 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 32
77313605 TAAATGTTTT
77313615 ATAATATTAAAAAATA-TTTAATATTTA-AAA
1 ATAATATTAAAAAATATTTTAATATTTATAAA
*
77313645 ATAAT-TTGAAAATATATTTTTAATATTTATAAA
1 ATAATATT-AAAAAATA-TTTTAATATTTATAAA
77313678 ATATATAT
1 ATA-ATAT
77313686 ATTATAAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
29 2 0.06
30 12 0.35
32 11 0.32
33 6 0.18
34 2 0.06
35 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (32 bp):
ATAATATTAAAAAATATTTTAATATTTATAAA
Found at i:77313669 original size:49 final size:47
Alignment explanation
Indices: 77313541--77313694 Score: 127
Period size: 49 Copynumber: 3.2 Consensus size: 47
77313531 TCTATGTAAA
*
77313541 ATTTAAAAA-ATATTTAAAATCA-TTTAAAATATTAAAAAATATTTTAAAT
1 ATTTAAAAATA-ATTTAAAAT-ATTTTATAATATTAAAAAATA-TTT-AAT
* * * *
77313590 CATTT-TAAATCATTTTAAATGTTTTATAATATTAAAAAATATTTAAT
1 -ATTTAAAAATAATTTAAAATATTTTATAATATTAAAAAATATTTAAT
* * *
77313637 ATTTAAAAATAATTTGAAAATATATTTTTAATATTTATAAAATATAT-AT
1 ATTTAAAAATAATTT-AAAATAT-TTTATAATA-TTAAAAAATATTTAAT
77313686 ATTATAAAA
1 ATT-TAAAA
77313695 CATTTTTAAA
Statistics
Matches: 85, Mismatches: 12, Indels: 14
0.77 0.11 0.13
Matches are distributed among these distances:
46 4 0.05
47 11 0.13
48 8 0.09
49 42 0.49
50 20 0.24
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (47 bp):
ATTTAAAAATAATTTAAAATATTTTATAATATTAAAAAATATTTAAT
Found at i:77319917 original size:47 final size:47
Alignment explanation
Indices: 77319863--77320300 Score: 675
Period size: 47 Copynumber: 9.6 Consensus size: 47
77319853 TATTTGAATA
77319863 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
77319910 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
77319957 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
77320004 AATGTGAAAGTGTATATATGTG---A----T-A--GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
77320041 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
77320088 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
77320135 AATGTGAAAGTGTATATA--TGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
77320180 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
77320227 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
77320274 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
77320301 TCCCGAAGGG
Statistics
Matches: 366, Mismatches: 13, Indels: 24
0.91 0.03 0.06
Matches are distributed among these distances:
37 34 0.09
39 1 0.00
40 2 0.01
44 2 0.01
45 45 0.12
47 282 0.77
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:77319979 original size:131 final size:135
Alignment explanation
Indices: 77319863--77320249 Score: 546
Period size: 131 Copynumber: 2.9 Consensus size: 135
77319853 TATTTGAATA
77319863 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
77319928 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-AAGG-CTAAT--
77319993 CCGATGTGATG
127 --GATGTGATG
77320004 AATGTGAAAGTGTATATATGTG---A----T-A--GCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
77320059 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
66 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-AAGG-CTAAT--
77320124 CCGATGTGATG
127 --GATGTGATG
77320135 AATGTGAAAGTGTATATA--TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
77320198 TGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
66 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77320250 TAGGGCCGAG
Statistics
Matches: 231, Mismatches: 5, Indels: 22
0.90 0.02 0.09
Matches are distributed among these distances:
129 2 0.01
131 123 0.53
132 1 0.00
133 1 0.00
134 1 0.00
136 1 0.00
137 1 0.00
138 1 0.00
139 78 0.34
141 22 0.10
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (135 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAAAGGCTAATGATG
TGATG
Found at i:77320200 original size:25 final size:25
Alignment explanation
Indices: 77320172--77320250 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
77320162 CTAATGGCCG
77320172 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* ***
77320197 ATGTGAT-AAGGTCG-AA-TGGCCA-
1 ATGTGATGAATGT-GAAAGTGTATAT
77320219 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
77320244 ATGTGAT
1 ATGTGAT
77320251 AGGGCCGAGT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.04, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:77321417 original size:30 final size:30
Alignment explanation
Indices: 77321381--77321473 Score: 116
Period size: 30 Copynumber: 3.1 Consensus size: 30
77321371 GGTCAAATGG
* *
77321381 ACTCGAACCGCCTATATCCGAGTGATATGA
1 ACTCGAACCACCTATGTCCGAGTGATATGA
* *
77321411 ACTCGAACCACCCATGTCCGGGTGATATGA
1 ACTCGAACCACCTATGTCCGAGTGATATGA
* *
77321441 ACTCGCACCACCTATGTCC-AGGTTATATGA
1 ACTCGAACCACCTATGTCCGA-GTGATATGA
77321471 ACT
1 ACT
77321474 GCTCTGGGAC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (30 bp):
ACTCGAACCACCTATGTCCGAGTGATATGA
Found at i:77324508 original size:18 final size:20
Alignment explanation
Indices: 77324468--77324512 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
77324458 AAAAAAAGAT
77324468 ATTTAATATATATATTTTAAA
1 ATTT-ATATATATATTTTAAA
*
77324489 ATTTATATTTATA-TTT-AA
1 ATTTATATATATATTTTAAA
77324507 ATTTAT
1 ATTTAT
77324513 TAATAGTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 3 0.13
20 8 0.35
21 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTATATATATATTTTAAA
Found at i:77324805 original size:27 final size:27
Alignment explanation
Indices: 77324775--77324837 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
77324765 TTTTAAAAAA
* * *
77324775 TATTTAAAATATTATGATTTCTTATAT-
1 TATTTAAAAAATTATAATTT-TTAAATG
77324802 TA-TTAAAAAATTATAATTTTTAAATG
1 TATTTAAAAAATTATAATTTTTAAATG
77324828 TATTTAAAAA
1 TATTTAAAAA
77324838 TTGTATTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 5 0.16
26 17 0.55
27 9 0.29
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
TATTTAAAAAATTATAATTTTTAAATG
Found at i:77325017 original size:21 final size:20
Alignment explanation
Indices: 77324988--77325029 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
77324978 CAAAAAATAA
*
77324988 AAAATATATTTAATATTTAT
1 AAAATATATTTAATATATAT
77325008 AAAATAATATTTAATATATAT
1 AAAAT-ATATTTAATATATAT
77325029 A
1 A
77325030 TTTTAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAATATATTTAATATATAT
Found at i:77325056 original size:18 final size:20
Alignment explanation
Indices: 77325016--77325060 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
77325006 ATAAAATAAT
77325016 ATTTAATATATATATTTTAAA
1 ATTT-ATATATATATTTTAAA
*
77325037 ATTTATATTTATA-TTT-AA
1 ATTTATATATATATTTTAAA
77325055 ATTTAT
1 ATTTAT
77325061 TAATAGTGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 3 0.13
20 8 0.35
21 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTATATATATATTTTAAA
Found at i:77325330 original size:21 final size:20
Alignment explanation
Indices: 77325305--77325370 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
77325295 TAAAAAATAT
77325305 TTTTAAAAATAATAATTAAAA
1 TTTTAAAAAT-ATAATTAAAA
* *
77325326 TTTTAAAAATATTATAAAACA
1 TTTTAAAAATATAATTAAA-A
*
77325347 TTTTAAATATAT-ATTAAAAA
1 TTTTAAAAATATAATT-AAAA
77325367 TTTT
1 TTTT
77325371 TTAAAATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
20 14 0.36
21 25 0.64
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TTTTAAAAATATAATTAAAA
Found at i:77325371 original size:21 final size:20
Alignment explanation
Indices: 77325298--77325377 Score: 58
Period size: 21 Copynumber: 3.8 Consensus size: 20
77325288 ATAAAGTTAA
77325298 AAAATATTTTTAAAAATAATAATT
1 AAAA-ATTTTT-AAAAT-AT-ATT
77325322 -AAAA-TTTTAAAA-ATATT
1 AAAAATTTTTAAAATATATT
*
77325339 ATAAAACATTTTAAATATATATT
1 A-AAAA-TTTTTAAA-ATATATT
77325362 AAAAATTTTTTAAAAT
1 AAAAA-TTTTTAAAAT
77325378 TAATAATATA
Statistics
Matches: 48, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
17 3 0.06
18 2 0.04
19 4 0.08
20 4 0.08
21 13 0.27
22 13 0.27
23 9 0.19
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAAATTTTTAAAATATATT
Found at i:77325424 original size:18 final size:18
Alignment explanation
Indices: 77325374--77325425 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
77325364 AAATTTTTTA
*
77325374 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
** *
77325392 AAATAAGCAAAATAAATT
1 AAATAAATAATATAAATT
77325410 AAGA-AAATAATATAAA
1 AA-ATAAATAATATAAA
77325426 ACTTAAAAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 25 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:77325482 original size:9 final size:9
Alignment explanation
Indices: 77325468--77325509 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
77325458 AAAATATAAG
77325468 AAAAAAAGT
1 AAAAAAAGT
77325477 -AAAAAAGT
1 AAAAAAAGT
77325485 AAAAAACA-T
1 AAAAAA-AGT
77325494 AAAAAAAGT
1 AAAAAAAGT
77325503 AAAAAAA
1 AAAAAAA
77325510 AAATATAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 9 0.30
9 20 0.67
10 1 0.03
ACGTcount: A:0.81, C:0.02, G:0.07, T:0.10
Consensus pattern (9 bp):
AAAAAAAGT
Found at i:77325488 original size:7 final size:8
Alignment explanation
Indices: 77325469--77325508 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
77325459 AAATATAAGA
77325469 AAAAAAGT
1 AAAAAAGT
77325477 AAAAAAGT
1 AAAAAAGT
*
77325485 AAAAAACAT
1 AAAAAA-GT
77325494 AAAAAAAGT
1 -AAAAAAGT
77325503 AAAAAA
1 AAAAAA
77325509 AAAATATAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 20 0.71
9 2 0.07
10 6 0.21
ACGTcount: A:0.80, C:0.03, G:0.07, T:0.10
Consensus pattern (8 bp):
AAAAAAGT
Found at i:77326569 original size:34 final size:34
Alignment explanation
Indices: 77326518--77326583 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 34
77326508 ATAATGTCTA
77326518 AAAAATAATTTATTAAAAATTATAAAAACTTTAT
1 AAAAATAATTTATTAAAAATTATAAAAACTTTAT
*
77326552 AAAAAT-ATTT-TTATAAAATTTATAAAATCTTT
1 AAAAATAATTTATTA-AAAA-TTATAAAAACTTT
77326584 TTATAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 3 0.10
33 8 0.28
34 18 0.62
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (34 bp):
AAAAATAATTTATTAAAAATTATAAAAACTTTAT
Found at i:77326584 original size:22 final size:24
Alignment explanation
Indices: 77326537--77326589 Score: 74
Period size: 22 Copynumber: 2.2 Consensus size: 24
77326527 TTATTAAAAA
77326537 TTATAAAAACTTTATAAAAATATTT
1 TTAT-AAAACTTTATAAAAATATTT
*
77326562 TTATAAAA-TTTAT-AAAATCTTT
1 TTATAAAACTTTATAAAAATATTT
77326584 TTATAA
1 TTATAA
77326590 TTTTAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 14 0.52
23 5 0.19
24 4 0.15
25 4 0.15
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
TTATAAAACTTTATAAAAATATTT
Found at i:77330442 original size:12 final size:12
Alignment explanation
Indices: 77330427--77330452 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77330417 TAAATATAAG
77330427 ATTATTAAAATA
1 ATTATTAAAATA
77330439 ATTATTAAAATA
1 ATTATTAAAATA
77330451 AT
1 AT
77330453 AACTAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATTATTAAAATA
Found at i:77334362 original size:43 final size:42
Alignment explanation
Indices: 77334290--77334451 Score: 184
Period size: 43 Copynumber: 3.8 Consensus size: 42
77334280 ATCACATAAA
* * * * *
77334290 CTCATACAATGCC-ATATCTCAGATATGGTCTTACATGTTAT
1 CTCATACGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
* *
77334331 CTCATATCGATGCCAATGTCCCAGACATGGTCTTACACGGAAT
1 CTCATA-CGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
77334374 CAT-ATAACGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
1 C-TCAT-ACGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
* * *
77334417 CACAGTACGGTGCCAATGTCCCAAACATGGTCTTA
1 CTCA-TACGATGCCAATGTCCCAGACATGGTCTTA
77334452 TGTGATAGCC
Statistics
Matches: 103, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
41 6 0.06
42 6 0.06
43 88 0.85
44 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
CTCATACGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
Found at i:77336302 original size:40 final size:40
Alignment explanation
Indices: 77336208--77336423 Score: 242
Period size: 40 Copynumber: 5.4 Consensus size: 40
77336198 GATGATAACT
* * *
77336208 GGGCTAAGTCCCGAAGGCATTTTTTGCTAGTGACTAGT-TCC
1 GGGCTAAGTCCCGAAGGCA-TTTATGCGAGTTACTA-TATCC
* * *
77336249 GGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTACACCC
1 GGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTATATCC
* *
77336289 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTATATCC
** *
77336329 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTATATCC
* *
77336369 GGGCTATGTCCCGAAGGCATTGA-GCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTATGCGAGTTA-CTATATCC
* *
77336408 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
77336424 TACTTGGCTT
Statistics
Matches: 153, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
38 15 0.10
39 12 0.08
40 107 0.70
41 19 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTATATCC
Found at i:77345324 original size:15 final size:15
Alignment explanation
Indices: 77345306--77345364 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 15
77345296 TAAAAAATAT
77345306 AATATATTAAATTAA
1 AATATATTAAATTAA
*
77345321 AATATA-TCAA-TAA
1 AATATATTAAATTAA
77345334 AATAT-TT-AATTAA
1 AATATATTAAATTAA
* *
77345347 ATTACATTAAATATAA
1 AATATATTAAAT-TAA
77345363 AA
1 AA
77345365 AAAAATTCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
12 2 0.06
13 15 0.43
14 5 0.14
15 9 0.26
16 4 0.11
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.37
Consensus pattern (15 bp):
AATATATTAAATTAA
Found at i:77345327 original size:35 final size:35
Alignment explanation
Indices: 77345295--77345361 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
77345285 ACCTATATAT
*
77345295 ATAAAAAATATAA-TATATTAAATTAAAATATATCA
1 ATAAAAAATATAATTAAATTAAATT-AAATATATCA
* * *
77345330 ATAAAATATTTAATTAAATTACATTAAATATA
1 ATAAAAAATATAATTAAATTAAATTAAATATA
77345362 AAAAAAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 18 0.67
36 9 0.33
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (35 bp):
ATAAAAAATATAATTAAATTAAATTAAATATATCA
Found at i:77349465 original size:15 final size:16
Alignment explanation
Indices: 77349447--77349495 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
77349437 ATTTTTTTAA
77349447 AATT-ATCTTTTAATC
1 AATTGATCTTTTAATC
*
77349462 AATTGAT-TTCTAATC
1 AATTGATCTTTTAATC
*
77349477 AATTTGAGCTTTTAATC
1 AA-TTGATCTTTTAATC
77349494 AA
1 AA
77349496 CGTCTACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 13 0.46
16 6 0.21
17 9 0.32
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (16 bp):
AATTGATCTTTTAATC
Found at i:77350978 original size:27 final size:26
Alignment explanation
Indices: 77350922--77350978 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
77350912 CAACCTTAAC
* * *
77350922 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
77350948 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
77350975 CCTA
1 CCTA
77350979 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:77351253 original size:13 final size:13
Alignment explanation
Indices: 77351226--77351267 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
77351216 ACTTATTGCC
77351226 TATT-TTTTATAT
1 TATTATTTTATAT
77351238 TATATATTTT-TAT
1 TAT-TATTTTATAT
77351251 TATTATTTTAT-T
1 TATTATTTTATAT
77351263 TATTA
1 TATTA
77351268 ACCCATATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 15 0.56
13 8 0.30
14 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TATTATTTTATAT
Found at i:77355162 original size:27 final size:26
Alignment explanation
Indices: 77355106--77355162 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
77355096 CAACCTTAAC
* * *
77355106 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
77355132 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
77355159 CCTA
1 CCTA
77355163 TAAAGGTACT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:77355436 original size:13 final size:13
Alignment explanation
Indices: 77355409--77355450 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
77355399 ACTTATTGCC
77355409 TATT-TTTTATAT
1 TATTATTTTATAT
77355421 TATATATTTT-TAT
1 TAT-TATTTTATAT
77355434 TATTATTTTAT-T
1 TATTATTTTATAT
77355446 TATTA
1 TATTA
77355451 ACCCGTATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 15 0.56
13 8 0.30
14 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TATTATTTTATAT
Found at i:77362881 original size:349 final size:349
Alignment explanation
Indices: 77362242--77362892 Score: 1257
Period size: 349 Copynumber: 1.9 Consensus size: 349
77362232 GTGGATGATA
77362242 AATCTAGATTGAGACTTTTTGAAGTCTCTTCATCTTAATGTTGATAATATAATGGGTCAGGGTTA
1 AATCTAGATTGAGACTTTTTGAAGTCTCTTCATCTTAATGTTGATAATATAATGGGTCAGGGTTA
*
77362307 TGATAATGGTTTCGATATGAAATAGAAGCACCAAGGTGTTCAAAAGCGATTTCTTGAAACAAACA
66 TGATAATGGTTTCGATATGAAATACAAGCACCAAGGTGTTCAAAAGCGATTTCTTGAAACAAACA
77362372 CTAGAGCATTATTTATGCATTGTGCTTGTTATAGTTTGAATCTTACTCTTAGTGATATGGCACAT
131 CTAGAGCATTATTTATGCATTGTGCTTGTTATAGTTTGAATCTTACTCTTAGTGATATGGCACAT
77362437 TCTTGTATTAGAGCTGTTTAATTTTTTTGGAGTTGTTCAACGCATATATTCATTATTTTTAGGTT
196 TCTTGTATTAGAGCTGTTTAATTTTTTTGGAGTTGTTCAACGCATATATTCATTATTTTTAGGTT
77362502 CTACAAAAAGATGGAAAATTTTGCTTGACAATGTCCTTAAATGAATCTAATAGTACGATGTGTGA
261 CTACAAAAAGATGGAAAATTTTGCTTGACAATGTCCTTAAATGAATCTAATAGTACGATGTGTGA
77362567 ATATGTTAACTAATAACTCAATCT
326 ATATGTTAACTAATAACTCAATCT
* * *
77362591 AATCTAGATTGAGACTTTTTGAAGTCTCTTCATCTTAATGTTGATGATGTAATGGGTCAGGGTTG
1 AATCTAGATTGAGACTTTTTGAAGTCTCTTCATCTTAATGTTGATAATATAATGGGTCAGGGTTA
77362656 TGATAATGGTTTCGATATGAAATACAAGCACCAAGGTGTTCAAAAGCGATTTCTTGAAACAAACA
66 TGATAATGGTTTCGATATGAAATACAAGCACCAAGGTGTTCAAAAGCGATTTCTTGAAACAAACA
*
77362721 CTAGAGCATTATTTATGCCTTGTGCTTGTTATAGTTTGAATCTTACTCTTAGTGATATGGCACAT
131 CTAGAGCATTATTTATGCATTGTGCTTGTTATAGTTTGAATCTTACTCTTAGTGATATGGCACAT
77362786 TCTTGTATTAGAGCTGTTTAATTTTTTTGGAGTTGTTCAACGCATATATTCATTATTTTTAGGTT
196 TCTTGTATTAGAGCTGTTTAATTTTTTTGGAGTTGTTCAACGCATATATTCATTATTTTTAGGTT
77362851 CTACAAAAAGATGGAAAATTTTGCTTGACAATGTCCTTAAAT
261 CTACAAAAAGATGGAAAATTTTGCTTGACAATGTCCTTAAAT
77362893 AAACTTTGAA
Statistics
Matches: 297, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
349 297 1.00
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (349 bp):
AATCTAGATTGAGACTTTTTGAAGTCTCTTCATCTTAATGTTGATAATATAATGGGTCAGGGTTA
TGATAATGGTTTCGATATGAAATACAAGCACCAAGGTGTTCAAAAGCGATTTCTTGAAACAAACA
CTAGAGCATTATTTATGCATTGTGCTTGTTATAGTTTGAATCTTACTCTTAGTGATATGGCACAT
TCTTGTATTAGAGCTGTTTAATTTTTTTGGAGTTGTTCAACGCATATATTCATTATTTTTAGGTT
CTACAAAAAGATGGAAAATTTTGCTTGACAATGTCCTTAAATGAATCTAATAGTACGATGTGTGA
ATATGTTAACTAATAACTCAATCT
Found at i:77364729 original size:27 final size:27
Alignment explanation
Indices: 77364699--77364876 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77364689 ATATTGAGTC
* * * *
77364699 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
77364726 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77364753 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
77364781 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77364808 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77364835 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77364862 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77364877 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77364838 original size:82 final size:81
Alignment explanation
Indices: 77364720--77364875 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77364710 TGCTATATAA
* *
77364720 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
77364785 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
77364802 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
77364866 CACTTAGTGC
65 CACTTAGTGC
77364876 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77372666 original size:27 final size:27
Alignment explanation
Indices: 77372636--77372813 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77372626 ATATTGAGTC
* * * *
77372636 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
77372663 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77372690 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
77372718 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77372745 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77372772 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77372799 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77372814 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77372775 original size:82 final size:81
Alignment explanation
Indices: 77372657--77372812 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77372647 TGCTATATAA
* *
77372657 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
77372722 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
77372739 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
77372803 CACTTAGTGC
65 CACTTAGTGC
77372813 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77375054 original size:12 final size:11
Alignment explanation
Indices: 77375026--77375053 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
77375016 CACATATATA
77375026 AATTTTAAGAT
1 AATTTTAAGAT
77375037 AATTTTAAGAT
1 AATTTTAAGAT
77375048 AATTTT
1 AATTTT
77375054 TCTTATCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (11 bp):
AATTTTAAGAT
Found at i:77380054 original size:14 final size:14
Alignment explanation
Indices: 77380035--77380061 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
77380025 GTTTTTAGTT
77380035 TAATTTTTGTTTTC
1 TAATTTTTGTTTTC
77380049 TAATTTTTGTTTT
1 TAATTTTTGTTTT
77380062 ATTTGCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.74
Consensus pattern (14 bp):
TAATTTTTGTTTTC
Found at i:77383470 original size:9 final size:9
Alignment explanation
Indices: 77383450--77383525 Score: 50
Period size: 9 Copynumber: 8.2 Consensus size: 9
77383440 AGCCACCCCC
77383450 TTTTATTTTA
1 TTTTA-TTTA
77383460 TTTTATTTA
1 TTTTATTTA
*
77383469 TTATTATTTG
1 TT-TTATTTA
*
77383479 TTATA-TTA
1 TTTTATTTA
77383487 -TTTATTATCA
1 TTTTATT-T-A
* *
77383497 TTTTACTAA
1 TTTTATTTA
77383506 TTTTATTCTA
1 TTTTATT-TA
77383516 -TTTATTTA
1 TTTTATTTA
77383524 TT
1 TT
77383526 ATTCTTATAC
Statistics
Matches: 51, Mismatches: 8, Indels: 15
0.69 0.11 0.20
Matches are distributed among these distances:
7 3 0.06
8 5 0.10
9 23 0.45
10 15 0.29
11 5 0.10
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.70
Consensus pattern (9 bp):
TTTTATTTA
Found at i:77383487 original size:22 final size:22
Alignment explanation
Indices: 77383457--77383499 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
77383447 CCCTTTTATT
* *
77383457 TTATTTTATTTATTATTATTTG
1 TTATATTATTTATTATCATTTG
77383479 TTATATTATTTATTATCATTT
1 TTATATTATTTATTATCATTT
77383500 TACTAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (22 bp):
TTATATTATTTATTATCATTTG
Found at i:77383552 original size:51 final size:49
Alignment explanation
Indices: 77383454--77383577 Score: 121
Period size: 51 Copynumber: 2.5 Consensus size: 49
77383444 ACCCCCTTTT
* *
77383454 ATTTTATTTTATTTATTATTATTTGTTATATTATTTATTATCATTTTACTA
1 ATTTTATTCTATTTATTATTATTTCTTATATTATTTATTATCATTTTA--A
*
77383505 ATTTTATTCTATTTATTTATTA-TTCTTATACTTATATT-TTAT-TTTTTAA
1 ATTTTATTCTATTTA-TTATTATTTCTTATA-TTAT-TTATTATCATTTTAA
* *
77383554 ATTTTTTTGCTATTT-CTATTATTT
1 ATTTTATT-CTATTTATTATTATTT
77383578 TTTGTATTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
48 5 0.08
49 10 0.16
50 6 0.10
51 26 0.41
52 14 0.22
53 2 0.03
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.68
Consensus pattern (49 bp):
ATTTTATTCTATTTATTATTATTTCTTATATTATTTATTATCATTTTAA
Found at i:77383676 original size:23 final size:22
Alignment explanation
Indices: 77383641--77383743 Score: 75
Period size: 23 Copynumber: 4.4 Consensus size: 22
77383631 TATCATTGAG
*
77383641 TTTATTATTATTTTTTCTTTTCAT
1 TTTATT-TTATTTTTTATTTT-AT
77383665 TTTATTTTATTTTTTATTTTAT
1 TTTATTTTATTTTTTATTTTAT
*
77383687 TTCTA-TTTATCTTTGTT-TTTAAT
1 TT-TATTTTAT-TTT-TTATTTTAT
* *
77383710 TTTGTTTTAGTTGCTTTATTATTAT
1 TTTATTTTA-TT-TTTTATT-TTAT
77383735 TATTATTTT
1 T-TTATTTT
77383744 CTTAATTTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
22 10 0.16
23 32 0.50
24 12 0.19
25 4 0.06
26 6 0.09
ACGTcount: A:0.17, C:0.05, G:0.04, T:0.74
Consensus pattern (22 bp):
TTTATTTTATTTTTTATTTTAT
Found at i:77383679 original size:12 final size:12
Alignment explanation
Indices: 77383641--77383688 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
77383631 TATCATTGAG
77383641 TTTATTATTATTT
1 TTTATT-TTATTT
*
77383654 TTTCTTTTCA--T
1 TTTATTTT-ATTT
77383665 TTTATTTTATTT
1 TTTATTTTATTT
77383677 TTTATTTTATTT
1 TTTATTTTATTT
77383689 CTATTTATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
10 1 0.03
11 8 0.27
12 15 0.50
13 6 0.20
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:77386508 original size:94 final size:90
Alignment explanation
Indices: 77386392--77386602 Score: 232
Period size: 94 Copynumber: 2.3 Consensus size: 90
77386382 ACTTGTGTGA
* * * *
77386392 TCTAGTGTAAGACATGTTTGGGACATGAATT-AGCC-ACATTATG-AGAGCTAGTGTAAAACCAT
1 TCTAGTGTAAGACATGTCTGGGACATG-ATTCAGCCTACA-GACGTA-AGCCAGTGTAAAA-CAT
*
77386454 GTCTGGGACATGACATTGGCATTGAGACGAG
62 GTCTGGGACATG-CATCGGC-TTGAGACGAG
* * *
77386485 TGCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCTCCAGACGTAAGCCAGTGTAAGACATGTC
1 T-CTAGTGTAAGACATGTCTGGGACATGATTCAGCCTACAGACGTAAGCCAGTGTAAAACATGTC
* *
77386550 TGGGACATGCATCGGCTTGAGATGTG
65 TGGGACATGCATCGGCTTGAGACGAG
77386576 TC-AGTGTAAGACCATGTCTGGGACATG
1 TCTAGTGTAAGA-CATGTCTGGGACATG
77386603 GCATTGGCAC
Statistics
Matches: 103, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
89 9 0.09
90 16 0.16
91 9 0.09
92 6 0.06
93 18 0.17
94 42 0.41
95 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (90 bp):
TCTAGTGTAAGACATGTCTGGGACATGATTCAGCCTACAGACGTAAGCCAGTGTAAAACATGTCT
GGGACATGCATCGGCTTGAGACGAG
Found at i:77386544 original size:46 final size:43
Alignment explanation
Indices: 77386484--77386602 Score: 139
Period size: 46 Copynumber: 2.7 Consensus size: 43
77386474 ATTGAGACGA
* *
77386484 GTGCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCTCCAGAC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-GCCTCCAGAC
* ** *
77386528 GTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGAT
1 GT--GCCAGTGTAAGACATGTCTGGGACATGCATCGCCTCCAGAC
*
77386573 GTGTCAGTGTAAGACCATGTCTGGGACATG
1 GTGCCAGTGTAAGA-CATGTCTGGGACATG
77386603 GCATTGGCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
43 11 0.17
44 17 0.26
45 8 0.12
46 29 0.45
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (43 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGCCTCCAGAC
Found at i:77393658 original size:46 final size:46
Alignment explanation
Indices: 77393504--77393673 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 46
77393494 TCACTTGTGT
* * * ** *
77393504 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCAAGACGA
* * **
77393550 GAGCCAGTGTAAGACCATGTCTGGGACATGGAATT-GGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-G-CTTCGGCCTCAAGACGA
* * *
77393598 GTGCTAGTGTAAGACATGTCTGGGACATGCTTCGACCTCAAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCAAGACG-A
77393645 -AGCCAGTGTAAGACATGTCTGGGACATGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGC
77393674 ATTGACTACG
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 49 0.49
47 29 0.29
48 19 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCAAGACGA
Found at i:77397213 original size:11 final size:11
Alignment explanation
Indices: 77397176--77397244 Score: 50
Period size: 11 Copynumber: 5.9 Consensus size: 11
77397166 GAAATAAAAC
*
77397176 AAAACAAAAGA
1 AAAAGAAAAGA
* *
77397187 ATAAGAATAGA
1 AAAAGAAAAGA
*
77397198 GAAAGAAAAGAA
1 AAAAGAAAAG-A
77397210 AAAGAGAAAAAGA
1 AAA-AG-AAAAGA
77397223 AATAA-AGAAAGA
1 AA-AAGA-AAAGA
77397235 AAAAGAAAAG
1 AAAAGAAAAG
77397245 GGAAATTTAG
Statistics
Matches: 45, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
11 22 0.49
12 11 0.24
13 6 0.13
14 6 0.13
ACGTcount: A:0.75, C:0.01, G:0.19, T:0.04
Consensus pattern (11 bp):
AAAAGAAAAGA
Found at i:77397235 original size:31 final size:31
Alignment explanation
Indices: 77397153--77397243 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 31
77397143 AATAAAACAT
* *
77397153 AAAAGACATAAAAGAAATAAAACA-AAACAAAAGA
1 AAAAGA-AT-AAAGAAAGAAAA-AGAAA-AAGAGA
* *
77397187 ATAAGAATAGAGAAAG-AAAAGAAAAAGAGA
1 AAAAGAATAAAGAAAGAAAAAGAAAAAGAGA
77397217 AAAAGAAATAAAGAAAGAAAAAGAAAA
1 AAAAG-AATAAAGAAAGAAAAAGAAAA
77397244 GGGAAATTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
30 10 0.21
31 16 0.33
32 15 0.31
33 2 0.04
34 5 0.10
ACGTcount: A:0.76, C:0.03, G:0.15, T:0.05
Consensus pattern (31 bp):
AAAAGAATAAAGAAAGAAAAAGAAAAAGAGA
Found at i:77406177 original size:13 final size:13
Alignment explanation
Indices: 77406139--77406171 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
77406129 AAGGGTTTGT
77406139 TTAT-TAAACTAA
1 TTATCTAAACTAA
77406151 TTATCTAAACTAA
1 TTATCTAAACTAA
77406164 TTATCTAA
1 TTATCTAA
77406172 TTTAATCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:77408794 original size:7 final size:6
Alignment explanation
Indices: 77408759--77408793 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
77408749 CTTTATAACG
* *
77408759 AAAAAT AAACAT AAACAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
77408794 AAATAAGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:77414212 original size:13 final size:13
Alignment explanation
Indices: 77414190--77414222 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
77414180 AAGGGTTTGT
77414190 TTAT-TAAACTAA
1 TTATCTAAACTAA
77414202 TTATCTAAACTAA
1 TTATCTAAACTAA
*
77414215 TTAACTAA
1 TTATCTAA
77414223 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:77418221 original size:13 final size:13
Alignment explanation
Indices: 77418203--77418229 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77418193 GGAGTAATCG
77418203 CACACGGGCATGT
1 CACACGGGCATGT
77418216 CACACGGGCATGT
1 CACACGGGCATGT
77418229 C
1 C
77418230 CCTACCTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Found at i:77432938 original size:27 final size:27
Alignment explanation
Indices: 77432908--77433085 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77432898 ATATTGAGTC
* * * *
77432908 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
77432935 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77432962 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
77432990 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77433017 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77433044 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77433071 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77433086 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77433021 original size:82 final size:81
Alignment explanation
Indices: 77432929--77433084 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77432919 TGCTATATAA
* *
77432929 TCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
77432993 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
77433011 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
77433076 ACTTAGTGC
66 ACTTAGTGC
77433085 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77440870 original size:27 final size:27
Alignment explanation
Indices: 77440840--77441017 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77440830 ATATTGAGTC
* * * *
77440840 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
77440867 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77440894 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
77440922 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77440949 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77440976 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77441003 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77441018 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77440979 original size:82 final size:81
Alignment explanation
Indices: 77440861--77441016 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77440851 TGCTATATAA
* *
77440861 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
77440926 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
77440943 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
77441007 CACTTAGTGC
65 CACTTAGTGC
77441017 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77449764 original size:25 final size:25
Alignment explanation
Indices: 77449736--77449827 Score: 98
Period size: 25 Copynumber: 3.7 Consensus size: 25
77449726 GCTGTAAACT
*
77449736 GTAAGCTCTTACGAGATGAATAACG
1 GTAAGCTCTTACGAGCTGAATAACG
77449761 GTAAGCTCCTCTA--AGCTGAATAACG
1 GTAAGCT-CT-TACGAGCTGAATAACG
* *
77449786 GTAAGCTCATACGAGCTGAGTAACG
1 GTAAGCTCTTACGAGCTGAATAACG
* * *
77449811 ATAAGCTCATAAGAGCT
1 GTAAGCTCTTACGAGCT
77449828 AAAATCTTTA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
23 2 0.03
24 1 0.02
25 51 0.88
26 2 0.03
27 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (25 bp):
GTAAGCTCTTACGAGCTGAATAACG
Found at i:77451869 original size:9 final size:10
Alignment explanation
Indices: 77451823--77451869 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
77451813 AACATGTTGC
*
77451823 ATTTTAATTA
1 ATTTTTATTA
77451833 ATTTTATAATTA
1 ATTTT-T-ATTA
*
77451845 ATTTTGATTA
1 ATTTTTATTA
77451855 ATTTTTATT-
1 ATTTTTATTA
77451864 ATTTTT
1 ATTTTT
77451870 GACATATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 6 0.19
10 17 0.53
12 9 0.28
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTTTATTA
Found at i:77452894 original size:25 final size:21
Alignment explanation
Indices: 77452846--77452889 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
77452836 ATTACAATTG
77452846 TAAGGTAAATAATGAATTAAT
1 TAAGGTAAATAATGAATTAAT
77452867 TAAGGTAAATAATGAATTAAT
1 TAAGGTAAATAATGAATTAAT
77452888 TA
1 TA
77452890 TTTAAATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (21 bp):
TAAGGTAAATAATGAATTAAT
Done.