Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 246 of 325
Found at i:77792910 original size:3 final size:3
Alignment explanation
Indices: 77792902--77792976 Score: 150
Period size: 3 Copynumber: 25.0 Consensus size: 3
77792892 AACAACGGGT
77792902 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
77792950 AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA
77792977 GGATGCATAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:77794602 original size:64 final size:65
Alignment explanation
Indices: 77794477--77794601 Score: 166
Period size: 64 Copynumber: 2.0 Consensus size: 65
77794467 TAAAATTTAT
** * *
77794477 AAAAATATGTAAGTACGTGTTTTGTTTATTATGATTTTTTTTACATAATTATGAATTTTTTTAGA
1 AAAAATATGTAAGTACGTGTTTTGTTTATTATGATAATGTTTAAATAATTATGAATTTTTTTAGA
* *
77794542 AAAAAT-TGTAAGTATGTGTTTTGTTTATTAT-ATAATGTTTAGAAT-TTTATGAATTTTTTT
1 AAAAATATGTAAGTACGTGTTTTGTTTATTATGATAATGTTTA-AATAATTATGAATTTTTTT
77794602 TTTACTTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
63 21 0.40
64 26 0.49
65 6 0.11
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.54
Consensus pattern (65 bp):
AAAAATATGTAAGTACGTGTTTTGTTTATTATGATAATGTTTAAATAATTATGAATTTTTTTAGA
Found at i:77794830 original size:50 final size:50
Alignment explanation
Indices: 77794771--77794869 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
77794761 CAAAATGGAT
77794771 ATTAACCCTTGAATTAATGTCCCACCTCACTTTTTCGTTAAGGTTGTTAC
1 ATTAACCCTTGAATTAATGTCCCACCTCACTTTTTCGTTAAGGTTGTTAC
*
77794821 ATTAACCCTTGAATTAATGTCCTACCTCACTTTTTCGTTAAGGTTGTTA
1 ATTAACCCTTGAATTAATGTCCCACCTCACTTTTTCGTTAAGGTTGTTA
77794870 AGACAATTAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.41
Consensus pattern (50 bp):
ATTAACCCTTGAATTAATGTCCCACCTCACTTTTTCGTTAAGGTTGTTAC
Found at i:77797865 original size:20 final size:22
Alignment explanation
Indices: 77797837--77797877 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
77797827 AAATATCTCA
77797837 ATTAGTTTAATA-ATAAAAATT
1 ATTAGTTTAATATATAAAAATT
77797858 ATTA-TTTAATATATAAAAAT
1 ATTAGTTTAATATATAAAAAT
77797878 CTAACTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
ATTAGTTTAATATATAAAAATT
Found at i:77811621 original size:20 final size:20
Alignment explanation
Indices: 77811588--77811632 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
77811578 AATCAAAATG
77811588 TTTTTATTACTAA-TTATATT
1 TTTTTATTACTAATTTA-ATT
**
77811608 TTTTTATTTTTAATTTAATT
1 TTTTTATTACTAATTTAATT
77811628 TTTTT
1 TTTTT
77811633 TAACATTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTTATTACTAATTTAATT
Found at i:77818931 original size:22 final size:22
Alignment explanation
Indices: 77818900--77818943 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
77818890 AAAAGTTTGT
77818900 ATGCTAATTCATGAAATCAAAG
1 ATGCTAATTCATGAAATCAAAG
*
77818922 ATGCTCATTCATGAAATCAAAG
1 ATGCTAATTCATGAAATCAAAG
77818944 CTACTAGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (22 bp):
ATGCTAATTCATGAAATCAAAG
Found at i:77820284 original size:3 final size:3
Alignment explanation
Indices: 77820276--77820304 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
77820266 GGGTGAGTAT
77820276 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
77820305 AATTTCAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:77827772 original size:50 final size:50
Alignment explanation
Indices: 77827650--77827921 Score: 228
Period size: 50 Copynumber: 5.5 Consensus size: 50
77827640 TATGAGTGCT
* * ** ***
77827650 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-CGGTAAATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGC-CTCAATATGCGAGAGCC
* *
77827700 -TTGTAAGACCATGTTTGGGACATGACATCGG-CTGCAATATGCGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCT-CAATATGCGAGAGCC
* * * * *
77827749 AGTGTAAGACCATGTCCGGGACATGGCATCGGCCTCGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCAATATGCGAGAGCC
* * ** * * *
77827799 AGTGTAAGACCATATCTGGGACATGACATCGACCTTGATACGTGAGGGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCAATATGCGAGAGCC
* * * * * * * **
77827849 AGTGTAAGATCATGTTTGGGACATGGCATCAGCCTCGATACGTGAGATTC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCAATATGCGAGAGCC
77827899 AGTGTAAGACCATGTCT-GGACAT
1 AGTGTAAGACCATGTCTGGGACAT
77827922 AGCATCGACT
Statistics
Matches: 182, Mismatches: 36, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
47 1 0.01
49 43 0.24
50 136 0.75
51 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCAATATGCGAGAGCC
Found at i:77827857 original size:100 final size:100
Alignment explanation
Indices: 77827650--77827930 Score: 308
Period size: 100 Copynumber: 2.8 Consensus size: 100
77827640 TATGAGTGCT
* * *
77827650 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-CGGTAAATGAGAGCCT--TGTAAGACCAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATAAGTGAGAG-CTAGTGTAAGACCAT
* * *
77827712 GTTTGGGACATGACATCG-GCTGCAATATGCGAGAGCC
64 GTCTGGGACATGACATCGACCTG-AATACGCGAGAGCC
* * *
77827749 AGTGTAAGACCATGTCCGGGACATGGCATCGGCCTCGATATGTGAGAGCTAGTGTAAGACCATAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAAGTGAGAGCTAGTGTAAGACCATGT
* *
77827814 CTGGGACATGACATCGACCTTG-ATACGTGAGGGCC
66 CTGGGACATGACATCGACC-TGAATACGCGAGAGCC
* * * * *
77827849 AGTGTAAGATCATGTTTGGGACATGGCATCAGCCTCGATACGTGAGA-TTCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAAGTGAGAGCT-AGTGTAAGACCATG
77827913 TCT-GGACAT-AGCATCGAC
65 TCTGGGACATGA-CATCGAC
77827931 TTTTATGTAT
Statistics
Matches: 157, Mismatches: 18, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
98 4 0.03
99 55 0.35
100 95 0.61
101 1 0.01
102 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (100 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAAGTGAGAGCTAGTGTAAGACCATGT
CTGGGACATGACATCGACCTGAATACGCGAGAGCC
Found at i:77835778 original size:13 final size:12
Alignment explanation
Indices: 77835755--77835817 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
77835745 AATAATTTTA
77835755 TATTAAAATTAT
1 TATTAAAATTAT
77835767 TATT-AAA-TAT
1 TATTAAAATTAT
77835777 TATTAATAATTA-
1 TATTAA-AATTAT
*
77835789 TATTAAGAA-TGT
1 TATTAA-AATTAT
77835801 TATT-AAATTAT
1 TATTAAAATTAT
77835812 ATATTA
1 -TATTA
77835818 TTTTATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
10 9 0.22
11 8 0.20
12 22 0.54
13 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:77835782 original size:22 final size:23
Alignment explanation
Indices: 77835755--77835817 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
77835745 AATAATTTTA
77835755 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
77835777 TATTAATAATTA-TATTAAGAATGT
1 TATTAA-AATTATTATT-AGAATAT
77835801 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
77835818 TTTTATAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.43
23 8 0.23
24 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:77835824 original size:34 final size:33
Alignment explanation
Indices: 77835747--77835824 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 33
77835737 TTCTTAATAA
77835747 TAATTTTATATTAAAATTATTATTAAATATTAT
1 TAATTTTATATTAAAATTATTATTAAATATTAT
* *
77835780 TAATAATTATATTAAGAA-TGTTATTAAATTATATAT
1 TAAT-TTTATATTAA-AATTATTATTAAA-TAT-TAT
77835816 T-ATTTTATA
1 TAATTTTATA
77835825 AAATTGTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
33 4 0.11
34 23 0.61
35 7 0.18
36 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (33 bp):
TAATTTTATATTAAAATTATTATTAAATATTAT
Found at i:77836051 original size:44 final size:46
Alignment explanation
Indices: 77835995--77836087 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 46
77835985 TATTACATCT
77835995 ATTCCATTCAACCAAACACAAGAATT-CT-ATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCC
***
77836039 ATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCC
77836085 ATT
1 ATT
77836088 ACAGTTCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 23 0.52
45 2 0.05
46 19 0.43
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.32
Consensus pattern (46 bp):
ATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCC
Found at i:77836090 original size:16 final size:16
Alignment explanation
Indices: 77836069--77836155 Score: 111
Period size: 16 Copynumber: 5.4 Consensus size: 16
77836059 TGAATTACTG
77836069 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
77836085 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
* * *
77836101 ATTACAGTTATATTTC
1 ATTACAGCTCTATTCC
* *
77836117 ATTACATCTCTATTCA
1 ATTACAGCTCTATTCC
*
77836133 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
77836149 ATTACAG
1 ATTACAG
77836156 TAAAACAAAC
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 60 1.00
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:77837518 original size:34 final size:34
Alignment explanation
Indices: 77837475--77837542 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
77837465 ACAAATATAA
* *
77837475 CATAATCACAAGATAT-CAATTTAAGTAGAGAAAC
1 CATAATCACAACATATGC-ATTAAAGTAGAGAAAC
77837509 CATAATCACAACATATGCATTAAAGTAGAGAAAC
1 CATAATCACAACATATGCATTAAAGTAGAGAAAC
77837543 AACTGCAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 30 0.97
35 1 0.03
ACGTcount: A:0.50, C:0.16, G:0.12, T:0.22
Consensus pattern (34 bp):
CATAATCACAACATATGCATTAAAGTAGAGAAAC
Found at i:77851100 original size:26 final size:26
Alignment explanation
Indices: 77851071--77851122 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
77851061 AGTTGTAAAG
*
77851071 AGAAAATTATCTGAAGAGAT-TATTTT
1 AGAAAATT-TCTAAAGAGATATATTTT
*
77851097 AGAAAATTTCTAAAGATATATATTTT
1 AGAAAATTTCTAAAGAGATATATTTT
77851123 TTATTTACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (26 bp):
AGAAAATTTCTAAAGAGATATATTTT
Found at i:77851486 original size:43 final size:43
Alignment explanation
Indices: 77851438--77851521 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
77851428 TGCCCACATA
* * *
77851438 GTGCATCATTGAGTAAGCCGAAGCAATTATAATGGCACACAAG
1 GTGCATCATCGAGCAAGCCGAAGCAATTATAATGCCACACAAG
* *
77851481 GTGCATCATCGAGCAAGCTGAAGCAATTATATTGCCACACA
1 GTGCATCATCGAGCAAGCCGAAGCAATTATAATGCCACACA
77851522 TAGTGTTGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (43 bp):
GTGCATCATCGAGCAAGCCGAAGCAATTATAATGCCACACAAG
Found at i:77857226 original size:57 final size:58
Alignment explanation
Indices: 77857127--77857238 Score: 151
Period size: 57 Copynumber: 1.9 Consensus size: 58
77857117 AGAAATGGTG
*
77857127 AAAATAGAGAAATGGGTAATATTTAGAAATGATATTAATTTTCTCTAAAATGAAAAAC
1 AAAATAGAGAAATGGGTAATATTTAGAAATGATATTAATTTTCTCCAAAATGAAAAAC
*
77857185 AAAATAGAGAAAT-GG-AATTATTTTA-AAATGA-ATGTAGTTTTCTCCAAAATGAAA
1 AAAATAGAGAAATGGGTAA-TA-TTTAGAAATGATAT-TAATTTTCTCCAAAATGAAA
77857239 TGAAAATGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
56 4 0.08
57 28 0.57
58 17 0.35
ACGTcount: A:0.49, C:0.05, G:0.14, T:0.31
Consensus pattern (58 bp):
AAAATAGAGAAATGGGTAATATTTAGAAATGATATTAATTTTCTCCAAAATGAAAAAC
Found at i:77857247 original size:6 final size:6
Alignment explanation
Indices: 77857230--77857258 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
77857220 AGTTTTCTCC
77857230 AAAATG -AAATG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG
77857259 GAGAAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:77864171 original size:13 final size:14
Alignment explanation
Indices: 77864155--77864183 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
77864145 TTTCCATCTA
77864155 TCTTCTTTATT-TT
1 TCTTCTTTATTGTT
77864168 TCTTCTTTATTGTT
1 TCTTCTTTATTGTT
77864182 TC
1 TC
77864184 AATATTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.72
Consensus pattern (14 bp):
TCTTCTTTATTGTT
Found at i:77864416 original size:94 final size:94
Alignment explanation
Indices: 77864246--77864552 Score: 339
Period size: 94 Copynumber: 3.3 Consensus size: 94
77864236 TTTTATTTGA
** * ** * *
77864246 CTCGACTATAACAATATAGAGTGTTTGTCGAGGCATTAAACACGTGGTAGTCTGCTAAAACATTA
1 CTCGACTATAACAATATAGAAAGTCTGTCGAGATATTAAACACGGGGTAGTCTGCTAGAACATTA
* *
77864311 AACATGGGGTTACCTGTGTAAGACCATAG
66 AACATGAGGTTACATGTGTAAGACCATAG
*
77864340 CTC-AGTTATAACAATATAGAAAGTCTGTCGAGATATTAAACACGGGGTAGTCTGCTAGAACATT
1 CTCGA-CTATAACAATATAGAAAGTCTGTCGAGATATTAAACACGGGGTAGTCTGCTAGAACATT
* * * *
77864404 AAACATGTGGTTACAAGTGTAATACCATAA
65 AAACATGAGGTTACATGTGTAAGACCATAG
* * ** * * * *
77864434 CTCGACTATGATAGCATAGAAAGTCTGTCGGGATATTAAACATGGGGTAGT-TCACTAGGACATT
1 CTCGACTATAACAATATAGAAAGTCTGTCGAGATATTAAACACGGGGTAGTCT-GCTAGAACATT
*
77864498 AAACATCAGGTTACATGTGTAAGACCATAG
65 AAACATGAGGTTACATGTGTAAGACCATAG
* * * *
77864528 CTTGACTATGACAACATAGAGAGTC
1 CTCGACTATAACAATATAGAAAGTC
77864553 CGCTGGGATG
Statistics
Matches: 179, Mismatches: 31, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
93 2 0.01
94 176 0.98
95 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.27
Consensus pattern (94 bp):
CTCGACTATAACAATATAGAAAGTCTGTCGAGATATTAAACACGGGGTAGTCTGCTAGAACATTA
AACATGAGGTTACATGTGTAAGACCATAG
Found at i:77868904 original size:42 final size:42
Alignment explanation
Indices: 77868850--77869005 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
77868840 AAATCAGACA
*
77868850 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
77868892 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
77868934 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
77868978 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
77869006 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:77876231 original size:42 final size:42
Alignment explanation
Indices: 77876166--77876321 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
77876156 AAATCGGACA
*
77876166 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
77876208 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
77876250 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
77876294 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
77876322 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:77881011 original size:55 final size:55
Alignment explanation
Indices: 77880929--77881041 Score: 129
Period size: 55 Copynumber: 2.1 Consensus size: 55
77880919 CCCGAGTTAA
* * *** *
77880929 TTTAACAGGTTTGACCACGGGTGTTCCACCCGGGTGTGTCGAATGCCCGTGTTGT
1 TTTAACAGGTTTGACCACGGGTCTTCCACACGGCCATGTCGAACGCCCGTGTTGT
* * *
77880984 TTTAACAGGTTT-TCCTACGGTTCTTCCACACGGCCATGTCGTACGCCCGTGTTGT
1 TTTAACAGGTTTGACC-ACGGGTCTTCCACACGGCCATGTCGAACGCCCGTGTTGT
77881039 TTT
1 TTT
77881042 GGCAGGCTCG
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
54 2 0.04
55 46 0.96
ACGTcount: A:0.14, C:0.26, G:0.26, T:0.35
Consensus pattern (55 bp):
TTTAACAGGTTTGACCACGGGTCTTCCACACGGCCATGTCGAACGCCCGTGTTGT
Found at i:77885032 original size:35 final size:35
Alignment explanation
Indices: 77884993--77885063 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
77884983 CCAGTTGCTG
77884993 AGATGGGTCAATCGGCTTCCTTAGAGTAATTCCTT
1 AGATGGGTCAATCGGCTTCCTTAGAGTAATTCCTT
*
77885028 AGATGGGTCAATCGGCTTCCTTGGAGTAATTCCTT
1 AGATGGGTCAATCGGCTTCCTTAGAGTAATTCCTT
77885063 A
1 A
77885064 CTCCCCCTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (35 bp):
AGATGGGTCAATCGGCTTCCTTAGAGTAATTCCTT
Found at i:77889742 original size:27 final size:27
Alignment explanation
Indices: 77889712--77889764 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
77889702 TATCCTGGGA
77889712 GTAAGATTTCTTACTTCTTTGAATGGT
1 GTAAGATTTCTTACTTCTTTGAATGGT
77889739 GTAAGATTTCTTACTTCTTTGAATGG
1 GTAAGATTTCTTACTTCTTTGAATGG
77889765 CCTCATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (27 bp):
GTAAGATTTCTTACTTCTTTGAATGGT
Found at i:77893589 original size:73 final size:74
Alignment explanation
Indices: 77893405--77893847 Score: 647
Period size: 74 Copynumber: 6.0 Consensus size: 74
77893395 AACAAAGGCA
* * * *
77893405 ACAATCCACGTGTTAGAATACATCAACTGCTTTACATGCTAACAATATTAACTCGCTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
77893470 ACACAACAT
66 ACACAACAT
* * * * * * *
77893479 ACTATTCACATGTTAGAAATCATCAACTGCTTTACATGCTAACAACCTTAACGCACTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
77893544 -CACAACAT
66 ACACAACAT
*
77893552 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTAGCTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
77893617 -CACAACAT
66 ACACAACAT
* * *
77893625 ACAATCCACGTGTTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTTGCTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
77893690 ACACAACAT
66 ACACAACAT
* * * *
77893699 GCAATCCACATGCTAGAATTCATCAACTTCTTTACATGCTAACAACCTTAACGCGCTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
*
77893764 ACAAAACAT
66 ACACAACAT
* * * *
77893773 AAAATCTACGTGCTAGAATCCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
*
77893838 ACATAACAT
66 ACACAACAT
77893847 A
1 A
77893848 TAATAGAGTA
Statistics
Matches: 331, Mismatches: 37, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
73 135 0.41
74 196 0.59
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.28
Consensus pattern (74 bp):
ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
ACACAACAT
Found at i:77896596 original size:6 final size:6
Alignment explanation
Indices: 77896585--77896624 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
77896575 CACGAAATTC
77896585 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
77896625 TTTAAGATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:77900793 original size:25 final size:25
Alignment explanation
Indices: 77900759--77900811 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
77900749 AAAACAACAA
77900759 TGAGCGACATTTATGGGCCAAAGAG
1 TGAGCGACATTTATGGGCCAAAGAG
77900784 TGAGCGACATTTATGGGCCAAAGAG
1 TGAGCGACATTTATGGGCCAAAGAG
77900809 TGA
1 TGA
77900812 ACTGTAGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (25 bp):
TGAGCGACATTTATGGGCCAAAGAG
Found at i:77902152 original size:43 final size:43
Alignment explanation
Indices: 77902088--77902169 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
77902078 TTGTATGTTG
*
77902088 TAATGATTGATTTTGGATGTAGTTATAAGAATGTGTTATATCT
1 TAATGATTAATTTTGGATGTAGTTATAAGAATGTGTTATATCT
*
77902131 TAATGATTAATTTTGGCTGTAGTTATAAGAATGTGTTAT
1 TAATGATTAATTTTGGATGTAGTTATAAGAATGTGTTAT
77902170 GCCTTGTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.46
Consensus pattern (43 bp):
TAATGATTAATTTTGGATGTAGTTATAAGAATGTGTTATATCT
Found at i:77903307 original size:6 final size:6
Alignment explanation
Indices: 77903296--77903341 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
77903286 ATAATTTAAC
77903296 AAATAA AAATAA AAATAA AAATCTAA AAATAA AAAT-A AAATAA AAA
1 AAATAA AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
77903342 ACATATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.14
6 26 0.70
8 6 0.16
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:77903324 original size:14 final size:13
Alignment explanation
Indices: 77903273--77903341 Score: 67
Period size: 11 Copynumber: 5.5 Consensus size: 13
77903263 CAACCCAACC
*
77903273 ATAAAAATTACAA
1 ATAAAAATTAAAA
*
77903286 AT--AATTTAACAA
1 ATAAAAATTAA-AA
77903298 ATAAAAA-TAAAA
1 ATAAAAATTAAAA
77903310 ATAAAAATCTAAAA
1 ATAAAAAT-TAAAA
77903324 ATAAAAA-T-AAA
1 ATAAAAATTAAAA
77903335 ATAAAAA
1 ATAAAAA
77903342 ACATATAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
11 15 0.31
12 14 0.29
13 5 0.10
14 14 0.29
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (13 bp):
ATAAAAATTAAAA
Found at i:77903375 original size:9 final size:9
Alignment explanation
Indices: 77903361--77903446 Score: 136
Period size: 9 Copynumber: 9.6 Consensus size: 9
77903351 TTTATACAAA
77903361 TAATTCGGT
1 TAATTCGGT
77903370 TAATTCGGT
1 TAATTCGGT
77903379 TAATTCGGT
1 TAATTCGGT
* *
77903388 TAATTTGGG
1 TAATTCGGT
*
77903397 TAATTCGGG
1 TAATTCGGT
77903406 TAATTCGGT
1 TAATTCGGT
*
77903415 TAATTCGAT
1 TAATTCGGT
77903424 TAATTCGGT
1 TAATTCGGT
77903433 TAATTCGGT
1 TAATTCGGT
77903442 TAATT
1 TAATT
77903447 TTATACTTAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 71 1.00
ACGTcount: A:0.24, C:0.09, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:77906055 original size:24 final size:23
Alignment explanation
Indices: 77906022--77906079 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
77906012 AGTTGAAAAG
77906022 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
77906046 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
77906068 TATATATAATAA
1 TATA-ATAATAA
77906080 TGCTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:77906432 original size:49 final size:48
Alignment explanation
Indices: 77906350--77906507 Score: 264
Period size: 49 Copynumber: 3.2 Consensus size: 48
77906340 CTTACTTTGA
*
77906350 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
77906397 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
*
77906446 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCAGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
77906495 GAATGTGATAAGT
1 GAATGTGA-AAGT
77906508 CCCGAAGGGC
Statistics
Matches: 105, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
47 13 0.12
49 88 0.84
50 4 0.04
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:77906681 original size:37 final size:37
Alignment explanation
Indices: 77906625--77906703 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
77906615 CCGAGCTCTA
* * *
77906625 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
77906662 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
77906699 AAGAC
1 AAGAC
77906704 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:77910989 original size:43 final size:43
Alignment explanation
Indices: 77910909--77911078 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 43
77910899 TACACGTACA
* * * *
77910909 ATGCCAACGTCCTAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATATTG
* **
77910952 ATGTCTTTGTCCCAGACAGGGTCTTACACGAAATCAAATA-TG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATTG
* * * *
77910994 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACG-AAATC-AAATATTG
* *
77911038 ATGCCAATGTTCCAGAC-GTGGTCTTACACGAAATCACATAT
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATAT
77911079 CGGAATCCTA
Statistics
Matches: 103, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 29 0.28
43 44 0.43
44 30 0.29
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATTG
Found at i:77911053 original size:44 final size:44
Alignment explanation
Indices: 77910959--77911072 Score: 153
Period size: 44 Copynumber: 2.6 Consensus size: 44
77910949 TTGATGTCTT
* * *
77910959 TGTCCCAGACAGGGTCTTACACGAAA--TCAAATATGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCTCAAATACGATGCCAA
77911001 TGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAA
1 TGTCCCAGACATGGTCTTACACG-AAATCTCAAATACGATGCCAA
* *
77911045 TGTTCCAGACGTGGTCTTACACGAAATC
1 TGTCCCAGACATGGTCTTACACGAAATC
77911073 ACATATCGGA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
42 22 0.34
43 8 0.12
44 28 0.44
45 6 0.09
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (44 bp):
TGTCCCAGACATGGTCTTACACGAAATCTCAAATACGATGCCAA
Found at i:77918825 original size:19 final size:21
Alignment explanation
Indices: 77918801--77918842 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
77918791 AATCATAATA
77918801 AATAACA-AAT-ATAATGAAG
1 AATAACAGAATAATAATGAAG
77918820 AATAACAGTAATAATAATGAAG
1 AATAACAG-AATAATAATGAAG
77918842 A
1 A
77918843 CTAATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.62, C:0.05, G:0.12, T:0.21
Consensus pattern (21 bp):
AATAACAGAATAATAATGAAG
Found at i:77924358 original size:20 final size:21
Alignment explanation
Indices: 77924323--77924365 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
77924313 CTAAACCGCT
77924323 AACTTATAAAACTTTTA-CAA
1 AACTTATAAAACTTTTATCAA
**
77924343 AACTTATAAATGTTTTATCAA
1 AACTTATAAAACTTTTATCAA
77924364 AA
1 AA
77924366 TAGGGGACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (21 bp):
AACTTATAAAACTTTTATCAA
Found at i:77929460 original size:48 final size:48
Alignment explanation
Indices: 77929381--77929660 Score: 243
Period size: 48 Copynumber: 5.9 Consensus size: 48
77929371 CACATAGTAG
* * * * * *
77929381 GATGCTAATGCCATATCCTAAATATGGTCTTACATGGGATCAAATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATGTC
* * *
77929429 AATGCCAATGCTATGTCCCAGACATGGTCTTACATGAGAT--CATG-C
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATGTC
* * * * * *
77929474 -ATACCGAA-GCCGATAG-CCCAG-CTATGGTCTTACACGATG-TCTCATATT
1 GATGCC-AATGCC-AT-GTCCCAGAC-ATGGTCTTACATG-GGATCACATGTC
* *
77929522 GATGCCAATGCCATGTCCCAGACACGGTCTTACATGGGATCACATTTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATGTC
* *
77929570 GATACCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATTTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATGTC
* * ** *
77929618 GATGCCAATGCAATGACCTGGACATGATCTTACATGGGATCAC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
77929661 TCATATCCCT
Statistics
Matches: 189, Mismatches: 30, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
44 7 0.04
45 23 0.12
46 5 0.03
47 5 0.03
48 141 0.75
49 8 0.04
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATGTC
Found at i:77933422 original size:33 final size:34
Alignment explanation
Indices: 77933358--77933448 Score: 87
Period size: 33 Copynumber: 2.7 Consensus size: 34
77933348 ACGTTCAAGG
* * * *
77933358 TGCCATAACCCAGTTACGGTCCTTTCATTAAA-A-
1 TGCCATAGCCCAGCTATGGT-CTTCCATTAAACAC
77933391 TGCCATAGCCCAGCTATGGTCTTCCATTTAAACAC
1 TGCCATAGCCCAGCTATGGTCTTCCA-TTAAACAC
* * *
77933426 TGCCATAGTCCAACCATGGTCTT
1 TGCCATAGCCCAGCTATGGTCTT
77933449 ATCTGTCAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
32 5 0.10
33 22 0.46
34 1 0.02
35 20 0.42
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (34 bp):
TGCCATAGCCCAGCTATGGTCTTCCATTAAACAC
Found at i:77939763 original size:48 final size:48
Alignment explanation
Indices: 77939704--77939819 Score: 137
Period size: 47 Copynumber: 2.4 Consensus size: 48
77939694 TATGTGTGCT
* * *
77939704 AGTGTAAGACCATGTTTGGGACATGACATTGGCCACGAT-ATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGACATTGG-CAAGATAATAAAAGCC
* * * *
77939752 AGTGTAAGACCATG-TTGGAACATGGCATTGGCAATATAATAAAAGCT
1 AGTGTAAGACCATGTTTGGGACATGACATTGGCAAGATAATAAAAGCC
*
77939799 AGTGTGAGACCATGTTTGGGA
1 AGTGTAAGACCATGTTTGGGA
77939820 TATGGCATCG
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 4 0.07
47 34 0.60
48 19 0.33
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGACATTGGCAAGATAATAAAAGCC
Found at i:77939999 original size:144 final size:143
Alignment explanation
Indices: 77939742--77940005 Score: 318
Period size: 144 Copynumber: 1.8 Consensus size: 143
77939732 TTGGCCACGA
* *** *
77939742 TATGAGAGCCAGTGTAAGACCATGTTGGAACATGGCATTGGCAATATAATAAAAGCTAGTGTGAG
1 TATGAGAGCCAGTGTAAGACCATATTGGAACATGGCATCAACAATATAATAAAAGCTAGTGTAAG
* * * * * * *
77939807 ACCATGTTTGGGATATGGCATCGGTATTGATATGTGCGCTAGTGTAAGACCATGTCTGACACACA
66 ACCATGTCTGGGATATGGCATCGGTATCGACATGTGAGCCAATATAAGACCATGTCTGACACACA
77939872 GCACCAGCTACAT
131 GCACCAGCTACAT
* * * *
77939885 TATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCAACATTGA-AACT-AGAGTTAGTGT
1 TATGAGAGCCAGTGTAAGACCATAT-TGGAACATGGCATCAACAAT-ATAA-TAAAAGCTAGTGT
*
77939948 AAGACCATGTCTGGGATATGGCATCGG-ACTCGACGTGTGAGCCAATATAAGACCATGT
63 AAGACCATGTCTGGGATATGGCATCGGTA-TCGACATGTGAGCCAATATAAGACCATGT
77940006 TTAGAATATG
Statistics
Matches: 100, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
143 25 0.25
144 73 0.73
145 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (143 bp):
TATGAGAGCCAGTGTAAGACCATATTGGAACATGGCATCAACAATATAATAAAAGCTAGTGTAAG
ACCATGTCTGGGATATGGCATCGGTATCGACATGTGAGCCAATATAAGACCATGTCTGACACACA
GCACCAGCTACAT
Found at i:77947508 original size:48 final size:48
Alignment explanation
Indices: 77947448--77947767 Score: 274
Period size: 48 Copynumber: 6.7 Consensus size: 48
77947438 TATGTGTGCT
77947448 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
* * * * * *
77947496 AGTGTAAGACCATGTTTGGAACATGGTATC-GCAATG-TAATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAT-ATGAGAGCC
* * * * * * *
77947543 AGTGTGAGACCATGTCTGGGACATGGTAT-AGACATTGATATGTGCA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAG-AGCC
* ***
77947591 AGTGTAAGACCATGTCTGGGACATAGCATTAACCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCC
* * ** **
77947639 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACAAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCC
* * * * *
77947687 AGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
* * *
77947735 AGTATAAGACCATGTTTGGAACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
77947768 AATTCACCCT
Statistics
Matches: 216, Mismatches: 45, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
46 1 0.00
47 44 0.20
48 164 0.76
49 7 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
Found at i:77947610 original size:143 final size:143
Alignment explanation
Indices: 77947442--77947767 Score: 390
Period size: 144 Copynumber: 2.3 Consensus size: 143
77947432 GGGTCATATG
77947442 TGTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCCAGTGTAAGA
1 TGTGACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGA
* * ** * *
77947505 CCATGTTTGGAACATGGTATC-GCAATGTA-ATGAGAGCTAGTGTGAGACCATGTCTGGGACATG
65 CCATGTCTGGAACATGGCATCGGCAATG-AGACAAGAGCTAGTGTAAGACCATGTCTAGGACATG
* *
77947568 GTATAGACATTGATA
129 GCATAGACATCGATA
* ***
77947583 TGTGCACTAGTGTAAGACCATGTCTGGGACATAGCATTAACCACATTATGAGAGCCAGTGTAAGA
1 TGTG-ACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGA
* * *
77947648 CCATGTCTGGGACATGGCATCGGCATTGAGACAAGAGTTAGTGTAAGACCATGTCTAGGACATGG
65 CCATGTCTGGAACATGGCATCGGCAATGAGACAAGAGCTAGTGTAAGACCATGTCTAGGACATGG
* * *
77947713 CATCGACCTCGACA
130 CATAGACATCGATA
* * * *
77947727 TGTGAGCCAGTATAAGACCATGTTTGGAACATGGCATCGGC
1 TGTGA-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
77947768 AATTCACCCT
Statistics
Matches: 153, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
141 4 0.03
142 1 0.01
143 73 0.48
144 75 0.49
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (143 bp):
TGTGACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGAC
CATGTCTGGAACATGGCATCGGCAATGAGACAAGAGCTAGTGTAAGACCATGTCTAGGACATGGC
ATAGACATCGATA
Found at i:77947675 original size:96 final size:95
Alignment explanation
Indices: 77947448--77947768 Score: 303
Period size: 96 Copynumber: 3.4 Consensus size: 95
77947438 TATGTGTGCT
* * *
77947448 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGAGAGCTAGTGTAAGACCATGTC
* * * *
77947512 TGGAACATG--GTATCGCA-ATGTAATGAGAGCT
65 TGGGACATGCATTAAC-CACAT-T-ATGAGAGCC
* * * * *
77947543 AGTGTGAGACCATGTCTGGGACATGGTATAGACATTGATATGTGCA-CTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAG-AGCTAGTGTAAGACCATGTC
77947607 TGGGACATAGCATTAACCACATTATGAGAGCC
65 TGGGACAT-GCATTAACCACATTATGAGAGCC
* ** *
77947639 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGAGTTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
* ** * * *
77947704 AGGACATGGCATCGACCTCGA-CATGTGAGCC
66 GGGACAT-GCATTAACCAC-ATTATGAGAGCC
* * *
77947735 AGTATAAGACCATGTTTGGAACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
77947769 ATTCACCCTC
Statistics
Matches: 187, Mismatches: 31, Indels: 15
0.80 0.13 0.06
Matches are distributed among these distances:
94 2 0.01
95 59 0.32
96 117 0.63
97 4 0.02
98 5 0.03
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
GGGACATGCATTAACCACATTATGAGAGCC
Found at i:77953827 original size:30 final size:30
Alignment explanation
Indices: 77953793--77953850 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
77953783 TTTTGGAAAG
*
77953793 TTGAATTTGATTATTAATCTTTTAAAAAAA
1 TTGAATTTGATTATTAACCTTTTAAAAAAA
77953823 TTGAATTTGATTATTAACCTTTTAAAAA
1 TTGAATTTGATTATTAACCTTTTAAAAA
77953851 GAGTAGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.47
Consensus pattern (30 bp):
TTGAATTTGATTATTAACCTTTTAAAAAAA
Found at i:77954237 original size:11 final size:11
Alignment explanation
Indices: 77954221--77954261 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
77954211 TTGATTAATT
77954221 TTAAAAAATAA
1 TTAAAAAATAA
77954232 TTAAAAAATAA
1 TTAAAAAATAA
*
77954243 --AATAAAATAT
1 TTAA-AAAATAA
77954253 TTAAAAAAT
1 TTAAAAAAT
77954262 GAAAAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
9 2 0.08
10 6 0.23
11 16 0.62
12 2 0.08
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TTAAAAAATAA
Found at i:77954251 original size:21 final size:22
Alignment explanation
Indices: 77954223--77954271 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
77954213 GATTAATTTT
77954223 AAAAAATAATTAAAAAAT-AAA
1 AAAAAATAATTAAAAAATGAAA
* *
77954244 ATAAAATATTTAAAAAATGAAA
1 AAAAAATAATTAAAAAATGAAA
77954266 AAAAAA
1 AAAAAA
77954272 GCAACCAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (22 bp):
AAAAAATAATTAAAAAATGAAA
Found at i:77959626 original size:48 final size:48
Alignment explanation
Indices: 77959529--77959809 Score: 323
Period size: 48 Copynumber: 5.9 Consensus size: 48
77959519 ATACTAGGGT
* * * * *
77959529 TATGTGAGCCAGTGTAAG-CCATGTTTGGAATATGGCATCGGCATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * * *
77959576 TATGAGAGCTAATGTAAGACTATGTATGGGACATGGTATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * *
77959624 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* *
77959672 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * *
77959720 CATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCAT-GGCATTGATA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--A
*
77959769 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
77959810 ACATCTTACC
Statistics
Matches: 193, Mismatches: 37, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
47 21 0.11
48 136 0.70
49 35 0.18
50 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
Found at i:77959661 original size:96 final size:96
Alignment explanation
Indices: 77959529--77959809 Score: 431
Period size: 96 Copynumber: 2.9 Consensus size: 96
77959519 ATACTAGGGT
* *
77959529 TATGTGAGCCAGTGTAAG-CCATGTTTGGAATATGGCATCGGCATTGATATGAGAGCTAATGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAA
* * *
77959593 GACTATGTATGGGACATGGTATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
*
77959624 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAA
* *
77959689 GACCATGTCTGGGACATGGCATTGGCCTTGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * *
77959720 CATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCAT-GGCATTGATATATGAGAGCCAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG--ATATGAGAGCTAGTGT
77959784 AAGACCATGTCTGGGACATGGCATCG
64 AAGACCATGTCTGGGACATGGCATCG
77959810 ACATCTTACC
Statistics
Matches: 170, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
95 24 0.14
96 106 0.62
97 40 0.24
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:77965389 original size:53 final size:53
Alignment explanation
Indices: 77965242--77965403 Score: 145
Period size: 53 Copynumber: 3.0 Consensus size: 53
77965232 CGACCGCATC
* * * *
77965242 ACTTTAACTATCCTAATATAATTTAAAATTCTAATTATTTTAATTAAAATCTAA
1 ACTTTAATTATCCTAATTTAATTT-AAATTCTAATTATCTTAAATAAAATCTAA
* * * *
77965296 A-ATT-ATTAT-CTAACCTATTAATTTAAATTATTAATGATCTTAAAT-AGAT-TAGA
1 ACTTTAATTATCCTAA--T-TTAATTTAAATT-CTAATTATCTTAAATAAAATCTA-A
*
77965349 ACTTTAATTATCCTAATTTAATTTAAACTTCTAATTATCTTAACTAAAATCTAA
1 ACTTTAATTATCCTAATTTAATTTAAA-TTCTAATTATCTTAAATAAAATCTAA
77965403 A
1 A
77965404 TTATTATCGG
Statistics
Matches: 84, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
51 4 0.05
52 6 0.07
53 35 0.42
54 28 0.33
55 7 0.08
56 4 0.05
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (53 bp):
ACTTTAATTATCCTAATTTAATTTAAATTCTAATTATCTTAAATAAAATCTAA
Found at i:77968016 original size:31 final size:31
Alignment explanation
Indices: 77967978--77968037 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
77967968 TTGACTCATG
77967978 TAATTTGCAGGATCTTGGATTTATAGGTCAA
1 TAATTTGCAGGATCTTGGATTTATAGGTCAA
77968009 TAATTTGCAGGATCTTGGATTTATAGGTC
1 TAATTTGCAGGATCTTGGATTTATAGGTC
77968038 CATACTTTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (31 bp):
TAATTTGCAGGATCTTGGATTTATAGGTCAA
Found at i:77968986 original size:118 final size:118
Alignment explanation
Indices: 77968778--77969013 Score: 454
Period size: 118 Copynumber: 2.0 Consensus size: 118
77968768 TGAATGTTGA
77968778 AATTGGGAGTTCATCGATGCTTCCCTTGTTGCTGTTGGGATCCCAAAGTTACTCAGGAAAGTAAT
1 AATTGGGAGTTCATCGATGCTTCCCTTGTTGCTGTTGGGATCCCAAAGTTACTCAGGAAAGTAAT
*
77968843 TATGGATGCTATTTCTTCCTCTACTATATAGATCCTTTGGAATGGAATTCCGT
66 TATGGATACTATTTCTTCCTCTACTATATAGATCCTTTGGAATGGAATTCCGT
77968896 AATTGGGAGTTCATCGATGCTTCCCTTGTTGCTGTTGGGATCCCAAAGTTACTCAGGAAAGTAAT
1 AATTGGGAGTTCATCGATGCTTCCCTTGTTGCTGTTGGGATCCCAAAGTTACTCAGGAAAGTAAT
*
77968961 TGTGGATACTATTTCTTCCTCTACTATATAGATCCTTTGGAATGGAATTCCGT
66 TATGGATACTATTTCTTCCTCTACTATATAGATCCTTTGGAATGGAATTCCGT
77969014 CTAAGTCTTT
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 116 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (118 bp):
AATTGGGAGTTCATCGATGCTTCCCTTGTTGCTGTTGGGATCCCAAAGTTACTCAGGAAAGTAAT
TATGGATACTATTTCTTCCTCTACTATATAGATCCTTTGGAATGGAATTCCGT
Found at i:77971614 original size:19 final size:20
Alignment explanation
Indices: 77971586--77971624 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
77971576 TCCCATTATT
77971586 TATTTATTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
*
77971605 TATTTGTTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
77971625 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:77971642 original size:25 final size:23
Alignment explanation
Indices: 77971605--77971650 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
77971595 TTTGTTTTAA
*
77971605 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
77971628 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
77971651 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:77971829 original size:5 final size:5
Alignment explanation
Indices: 77971819--77971854 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
77971809 ATTTTTTATG
*
77971819 GGCCC GGCCC GAACCC GGCCC GGCCC GGCCC GGCCC
1 GGCCC GGCCC G-GCCC GGCCC GGCCC GGCCC GGCCC
77971855 ATGCACACCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 24 0.86
6 4 0.14
ACGTcount: A:0.06, C:0.58, G:0.36, T:0.00
Consensus pattern (5 bp):
GGCCC
Found at i:77971840 original size:16 final size:15
Alignment explanation
Indices: 77971819--77971854 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
77971809 ATTTTTTATG
77971819 GGCCCGGCCCGAACCC
1 GGCCCGGCCCG-ACCC
*
77971835 GGCCCGGCCCGGCCC
1 GGCCCGGCCCGACCC
77971850 GGCCC
1 GGCCC
77971855 ATGCACACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.06, C:0.58, G:0.36, T:0.00
Consensus pattern (15 bp):
GGCCCGGCCCGACCC
Found at i:77972026 original size:21 final size:21
Alignment explanation
Indices: 77972002--77972066 Score: 51
Period size: 21 Copynumber: 2.9 Consensus size: 21
77971992 TATCTATCTA
77972002 AATTAAAAATCTAATTATCCT
1 AATTAAAAATCTAATTATCCT
* *
77972023 AATTTATTTAAACTCCTAATTATCTT
1 AA-TTA---AAAAT-CTAATTATCCT
77972049 AATT-AAAATCTAAATTAT
1 AATTAAAAATCT-AATTAT
77972067 TATCTAACCT
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
20 2 0.06
21 12 0.34
22 3 0.09
25 6 0.17
26 12 0.34
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (21 bp):
AATTAAAAATCTAATTATCCT
Found at i:77976654 original size:41 final size:42
Alignment explanation
Indices: 77976592--77976673 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 42
77976582 GAATCGGTGC
* * *
77976592 CGATACCATGTCCCGGACATGGT-TTATACGGGACCTCATAT
1 CGATACCATGTCCCAGACATGGTCTTACACGAGACCTCATAT
* *
77976633 CGATGCCATGTCCCAGACATGGTCTTACACGAGAGCTCATA
1 CGATACCATGTCCCAGACATGGTCTTACACGAGACCTCATA
77976674 AATCATGGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
41 21 0.60
42 14 0.40
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (42 bp):
CGATACCATGTCCCAGACATGGTCTTACACGAGACCTCATAT
Found at i:77978949 original size:26 final size:26
Alignment explanation
Indices: 77978916--77978982 Score: 116
Period size: 26 Copynumber: 2.5 Consensus size: 26
77978906 AAACTCTTCT
77978916 AAAAGAAAACTCAAGAGAAATTCTTG
1 AAAAGAAAACTCAAGAGAAATTCTTG
*
77978942 AAAAGAAAACTCGAGAGAAATTCTTG
1 AAAAGAAAACTCAAGAGAAATTCTTG
77978968 AAAAGAAAAACTCAA
1 AAAAG-AAAACTCAA
77978983 AAAGACTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 30 0.79
27 8 0.21
ACGTcount: A:0.57, C:0.12, G:0.15, T:0.16
Consensus pattern (26 bp):
AAAAGAAAACTCAAGAGAAATTCTTG
Found at i:77986267 original size:5 final size:5
Alignment explanation
Indices: 77986236--77986284 Score: 62
Period size: 5 Copynumber: 9.2 Consensus size: 5
77986226 GAGATTATGA
*
77986236 AATTG AATGTG AAATTG CATATG AATTG AATTG AATTG AATTG AATTG
1 AATTG AAT-TG -AATTG AAT-TG AATTG AATTG AATTG AATTG AATTG
77986284 A
1 A
77986285 GATTTATGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
5 28 0.72
6 8 0.21
7 3 0.08
ACGTcount: A:0.41, C:0.02, G:0.20, T:0.37
Consensus pattern (5 bp):
AATTG
Found at i:77986349 original size:31 final size:31
Alignment explanation
Indices: 77986314--77986460 Score: 181
Period size: 31 Copynumber: 4.7 Consensus size: 31
77986304 ATAATACAGA
77986314 GTATGAATATGAAAATATGAATGATTACAAG
1 GTATGAATATGAAAATATGAATGATTACAAG
*
77986345 GTATGGATAT-AAAAGTATGAATGATTACAAG
1 GTATGAATATGAAAA-TATGAATGATTACAAG
* * * *
77986376 ATATGAATATGACAGTATGAATGATTACAGG
1 GTATGAATATGAAAATATGAATGATTACAAG
* * *
77986407 GCATGACTAT-AAAGGTATGAATGATTACAAG
1 GTATGAATATGAAA-ATATGAATGATTACAAG
*
77986438 GTATGAATATGTAAATATGAATG
1 GTATGAATATGAAAATATGAATG
77986461 GTTGATGCCC
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
30 6 0.06
31 87 0.90
32 4 0.04
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (31 bp):
GTATGAATATGAAAATATGAATGATTACAAG
Found at i:77986384 original size:62 final size:62
Alignment explanation
Indices: 77986315--77986460 Score: 213
Period size: 62 Copynumber: 2.4 Consensus size: 62
77986305 TAATACAGAG
*
77986315 TATGAATATGAAAATATGAATGATTACAAGGTATGGA-TATAAAAGTATGAATGATTACAAGA
1 TATGAATATGAAAATATGAATGATTACAAGGCAT-GACTATAAAAGTATGAATGATTACAAGA
* * * * *
77986377 TATGAATATGACAGTATGAATGATTACAGGGCATGACTATAAAGGTATGAATGATTACAAGG
1 TATGAATATGAAAATATGAATGATTACAAGGCATGACTATAAAAGTATGAATGATTACAAGA
*
77986439 TATGAATATGTAAATATGAATG
1 TATGAATATGAAAATATGAATG
77986461 GTTGATGCCC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
61 2 0.03
62 72 0.97
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (62 bp):
TATGAATATGAAAATATGAATGATTACAAGGCATGACTATAAAAGTATGAATGATTACAAGA
Found at i:77986396 original size:14 final size:14
Alignment explanation
Indices: 77986313--77986397 Score: 53
Period size: 14 Copynumber: 5.6 Consensus size: 14
77986303 GATAATACAG
*
77986313 AGTATGAATATGAA
1 AGTATGAATATGAC
* *
77986327 AATATGAATGATTAC
1 AGTATGAAT-ATGAC
* * *
77986342 AAGGTATGGATATAAA
1 -A-GTATGAATATGAC
*
77986358 AGTATGAATGATTAC
1 AGTATGAAT-ATGAC
77986373 AAGATATGAATATGAC
1 -AG-TATGAATATGAC
77986389 AGTATGAAT
1 AGTATGAAT
77986398 GATTACAGGG
Statistics
Matches: 54, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
14 22 0.41
15 9 0.17
16 10 0.19
17 13 0.24
ACGTcount: A:0.47, C:0.04, G:0.20, T:0.29
Consensus pattern (14 bp):
AGTATGAATATGAC
Found at i:77987933 original size:6 final size:6
Alignment explanation
Indices: 77987922--77987953 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
77987912 GAGTCCATAG
*
77987922 ATATTA ATATTA ATATTA ATATTA ATAATA AT
1 ATATTA ATATTA ATATTA ATATTA ATATTA AT
77987954 TGGTTTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
ATATTA
Found at i:77989812 original size:19 final size:20
Alignment explanation
Indices: 77989771--77989813 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
77989761 TTTTGTAAAG
* *
77989771 TTTGTAAAATAGATGGTACT
1 TTTGTAAAATAGATGGAAAT
*
77989791 TTTGTGAAATA-ATGGAAAT
1 TTTGTAAAATAGATGGAAAT
77989810 TTTG
1 TTTG
77989814 GGTTGCTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (20 bp):
TTTGTAAAATAGATGGAAAT
Found at i:77990328 original size:48 final size:48
Alignment explanation
Indices: 77990266--77990434 Score: 182
Period size: 48 Copynumber: 3.6 Consensus size: 48
77990256 TGATATGTGT
*
77990266 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACCA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAA
* * * ** ** *
77990314 GCCAGTGTAAGACATGTTTGGGACATGCATC-AGCATTAAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CCTCGAGATATACAA
* * * *
77990360 GCTAGTGTAAGATATGTCTAGGATATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAA
*
77990408 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
77990435 GCGTCAACTT
Statistics
Matches: 93, Mismatches: 24, Indels: 8
0.74 0.19 0.06
Matches are distributed among these distances:
46 32 0.34
47 3 0.03
48 58 0.62
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAA
Found at i:77990514 original size:49 final size:48
Alignment explanation
Indices: 77990454--77990584 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 48
77990444 TGTTGCGTGT
* *
77990454 TAGTGTAAGACTTGTCTAGGACATGGCATCGACAC-CGATAGATGAGAG
1 TAGTGTAAGACTTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAG
* * * * * *
77990502 CTAGTGTAAGACTTATTTGGGACACGGCATCGGCCTCTATATATGAAAG
1 -TAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGAAAG
* *
77990551 TCAGTGTAAAACCTGTCTGGGACATGGCATCGAC
1 T-AGTGTAAGACTTGTCTGGGACATGGCATCGAC
77990585 TTTGATGTGC
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
48 2 0.03
49 64 0.97
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
TAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGAAAG
Found at i:77994180 original size:49 final size:47
Alignment explanation
Indices: 77993959--77994314 Score: 513
Period size: 47 Copynumber: 7.6 Consensus size: 47
77993949 CCCTTCGGGA
* * * * * *
77993959 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77994005 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77994053 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77994100 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77994147 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77994196 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77994245 CTTATCAC--ATA-CCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77994289 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
77994315 CACAATTATC
Statistics
Matches: 283, Mismatches: 20, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
44 38 0.13
45 3 0.01
46 5 0.02
47 141 0.50
48 2 0.01
49 94 0.33
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77994348 original size:93 final size:92
Alignment explanation
Indices: 77994065--77994314 Score: 312
Period size: 93 Copynumber: 2.7 Consensus size: 92
77994055 CATCACATAT
*
77994065 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC-TTCACATTC
** * *
77994128 ATCACATCGGCCATTAGGCCTTATCACATAT-AT
65 ATCACATTAGCCATT----C--GTCACATATCAC
77994161 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC-TTCACATTC
* * *
77994226 ATCACATTGGCCATTCGGC-CTTATCAC
65 ATCACATTAGCCATTCGTCACATATCAC
77994253 ATACCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA-TTCACAT
1 ATA-CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTCACAT
77994315 CACAATTATC
Statistics
Matches: 144, Mismatches: 6, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
91 11 0.08
92 5 0.03
93 51 0.35
94 1 0.01
96 42 0.29
98 34 0.24
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (92 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTCACATTCA
TCACATTAGCCATTCGTCACATATCAC
Found at i:78014964 original size:21 final size:21
Alignment explanation
Indices: 78014923--78014964 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
78014913 GTTGAGAAAA
* *
78014923 TTATTTAATTTAAAATTTAAT
1 TTATTTAAATTAAAATATAAT
78014944 TTATTTAAATTAACAA-ATAAT
1 TTATTTAAATTAA-AATATAAT
78014965 ATTTATATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTATTTAAATTAAAATATAAT
Found at i:78015876 original size:15 final size:18
Alignment explanation
Indices: 78015856--78015891 Score: 51
Period size: 15 Copynumber: 2.2 Consensus size: 18
78015846 TTATTATTTT
78015856 ATTTTTT-T-ATT-TTAA
1 ATTTTTTATAATTATTAA
78015871 ATTTTTTATAATTATTAA
1 ATTTTTTATAATTATTAA
78015889 ATT
1 ATT
78015892 CTAAGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.39
16 1 0.06
17 3 0.17
18 7 0.39
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTTTATAATTATTAA
Found at i:78016107 original size:19 final size:19
Alignment explanation
Indices: 78016060--78016099 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
78016050 ATTATTTAAC
78016060 TTATCTTTGAATTAATAAA
1 TTATCTTTGAATTAATAAA
78016079 TTATCTTTGAATTAATAAA
1 TTATCTTTGAATTAATAAA
78016098 TT
1 TT
78016100 CTTTTTGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (19 bp):
TTATCTTTGAATTAATAAA
Found at i:78016601 original size:19 final size:19
Alignment explanation
Indices: 78016577--78016615 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
78016567 ATACTAAAAG
78016577 TAAGAAAATTAGTTTTGAT
1 TAAGAAAATTAGTTTTGAT
78016596 TAAGAAAATTAGTTTTGAT
1 TAAGAAAATTAGTTTTGAT
78016615 T
1 T
78016616 CTATGTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (19 bp):
TAAGAAAATTAGTTTTGAT
Found at i:78020043 original size:27 final size:27
Alignment explanation
Indices: 78020013--78020190 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78020003 ATATTGAGTC
* * * *
78020013 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
78020040 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78020067 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
78020095 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
78020122 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
78020149 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78020176 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78020191 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:78020152 original size:82 final size:81
Alignment explanation
Indices: 78020034--78020189 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78020024 TGCTATATAA
* *
78020034 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
78020099 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
78020116 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
78020180 CACTTAGTGC
65 CACTTAGTGC
78020190 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:78021472 original size:13 final size:13
Alignment explanation
Indices: 78021454--78021478 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78021444 GGATGAGCAT
78021454 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
78021467 TTTTTTTTCTTT
1 TTTTTTTTCTTT
78021479 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:78030456 original size:21 final size:22
Alignment explanation
Indices: 78030427--78030473 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
78030417 CAGAAGGAGT
*
78030427 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
78030449 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
78030470 GAGT
1 GAGT
78030474 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:78031800 original size:27 final size:27
Alignment explanation
Indices: 78031770--78031947 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
78031760 ATATTGAGTC
* * * *
78031770 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
78031797 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78031824 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* ** * *
78031852 CACACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
78031879 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
78031906 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78031933 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78031948 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:78031909 original size:82 final size:81
Alignment explanation
Indices: 78031791--78031946 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
78031781 TGCTATATAA
* *
78031791 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCACA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCACA
78031856 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
78031873 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACA
78031937 CACTTAGTGC
65 CACTTAGTGC
78031947 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACAC
ACTTAGTGCCGCATGG
Found at i:78033228 original size:16 final size:16
Alignment explanation
Indices: 78033207--78033239 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
78033197 AGGATGAGCA
78033207 TTTTTT-TTTCTTAGTT
1 TTTTTTCTTTC-TAGTT
78033223 TTTTTTCTTTCTAGTT
1 TTTTTTCTTTCTAGTT
78033239 T
1 T
78033240 CGGCTAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.06, C:0.09, G:0.06, T:0.79
Consensus pattern (16 bp):
TTTTTTCTTTCTAGTT
Found at i:78033827 original size:46 final size:47
Alignment explanation
Indices: 78033742--78033831 Score: 121
Period size: 46 Copynumber: 1.9 Consensus size: 47
78033732 CACCATGTCT
* *
78033742 GGGACATGGCATCGGCATCGAGACGAGTGCTAGTATAAGACATGTTC
1 GGGACATGGCATCGGCATCGAGACGAGAGCCAGTATAAGACATGTTC
* *
78033789 GGGACAT-GCATCGGCCTCGAGACGTA-AGCCAGTGTAAGACATG
1 GGGACATGGCATCGGCATCGAGACG-AGAGCCAGTATAAGACATG
78033832 GATAGGACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
46 30 0.79
47 8 0.21
ACGTcount: A:0.28, C:0.21, G:0.32, T:0.19
Consensus pattern (47 bp):
GGGACATGGCATCGGCATCGAGACGAGAGCCAGTATAAGACATGTTC
Found at i:78035542 original size:32 final size:32
Alignment explanation
Indices: 78035504--78035567 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
78035494 TACTAAGTGG
*
78035504 TATTACATGGTCAAATTGTAGTATGGAAATAT
1 TATTACATGGTCAAATTGTAATATGGAAATAT
*
78035536 TATTACATGGTCGAATTGTAATATGGAAATAT
1 TATTACATGGTCAAATTGTAATATGGAAATAT
78035568 AACTTGTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (32 bp):
TATTACATGGTCAAATTGTAATATGGAAATAT
Found at i:78039914 original size:56 final size:54
Alignment explanation
Indices: 78039848--78039972 Score: 196
Period size: 54 Copynumber: 2.3 Consensus size: 54
78039838 TTAAATTTAC
* *
78039848 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGA-TATATAGCACTAAGTGTGCGAG-TTGATTATAT
*
78039904 AGCACTAAGTGTGCGAGTTTTATATATAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATATATAGCACTAAGTGTGCGAGTTGATTATAT
*
78039958 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78039973 GACTTAATAT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
54 23 0.35
55 21 0.32
56 21 0.32
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAGTTTGATATATAGCACTAAGTGTGCGAGTTGATTATAT
Found at i:78039941 original size:27 final size:28
Alignment explanation
Indices: 78039848--78039972 Score: 200
Period size: 28 Copynumber: 4.5 Consensus size: 28
78039838 TTAAATTTAC
*
78039848 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
78039876 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
78039904 AGCACTAAGTGTGCGAGTTTTA-TATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
78039931 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
78039958 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78039973 GACTTAATAT
Statistics
Matches: 92, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
26 3 0.03
27 40 0.43
28 49 0.53
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:78044757 original size:28 final size:28
Alignment explanation
Indices: 78044692--78044842 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
78044682 GAGATTGGCG
* * * *
78044692 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
78044721 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
78044749 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
78044777 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
78044805 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
78044832 CTGAGTGTGCG
1 CTAAGTGTGCG
78044843 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:78052825 original size:21 final size:22
Alignment explanation
Indices: 78052795--78052837 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
78052785 CATGATTTTG
78052795 TTTTATTTCTTTTCTTTTTGAA
1 TTTTATTTCTTTTCTTTTTGAA
78052817 TTTT-TTTCTTTTCTTTTTGAA
1 TTTTATTTCTTTTCTTTTTGAA
78052838 AATTTCCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.12, C:0.09, G:0.05, T:0.74
Consensus pattern (22 bp):
TTTTATTTCTTTTCTTTTTGAA
Found at i:78056161 original size:21 final size:22
Alignment explanation
Indices: 78056115--78056161 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
78056105 TGCAAGGCTC
**
78056115 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAAGGG
*
78056137 ACACGCCCGTGTGACCCTA-GG
1 ACACGCCCGTGTGACCCAAGGG
78056158 ACAC
1 ACAC
78056162 ACCTGTGCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.21, C:0.36, G:0.30, T:0.13
Consensus pattern (22 bp):
ACACGCCCGTGTGACCCAAGGG
Found at i:78057511 original size:58 final size:56
Alignment explanation
Indices: 78057357--78057511 Score: 156
Period size: 56 Copynumber: 2.7 Consensus size: 56
78057347 GTCAATAGTG
* * *
78057357 TATAACAGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTATGCTCAAAGAGTT
1 TATATCAGGATTACCAGTCCAGGCTAAATCC-TTCTATAACGTATACTCAAAGAGTT
* * * *
78057414 CA-ATTAGGATTACCAGTCCAGGCTAAACCCTAATC-ATAACGTATACTC-GAGAGGTAT
1 TATATCAGGATTACCAGTCCAGGCTAAATCCT--TCTATAACGTATACTCAAAGA-GT-T
78057471 TATATCAGGATTACTC-GTCCAGGCTAAATCCTTCCTATAAC
1 TATATCAGGATTAC-CAGTCCAGGCTAAATCCTT-CTATAAC
78057512 AAGGTCAATA
Statistics
Matches: 80, Mismatches: 10, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
55 4 0.05
56 40 0.50
57 5 0.06
58 30 0.38
59 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (56 bp):
TATATCAGGATTACCAGTCCAGGCTAAATCCTTCTATAACGTATACTCAAAGAGTT
Found at i:78068738 original size:13 final size:13
Alignment explanation
Indices: 78068720--78068747 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
78068710 GAAGCACGAC
78068720 TCACACGGGCGTG
1 TCACACGGGCGTG
78068733 TCACACGGGCGTG
1 TCACACGGGCGTG
78068746 TC
1 TC
78068748 CCTGTCGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:78071801 original size:55 final size:55
Alignment explanation
Indices: 78071703--78071822 Score: 132
Period size: 55 Copynumber: 2.2 Consensus size: 55
78071693 GCTAACCTGC
* * *
78071703 CAAAATAACACGGGCGTGCGACACACCCGTGCCTTGAAACCGTGGCCGAACCCGT
1 CAAATTAACACGGGCGTGCGACACACCCGTGCCTAGAAACCGTGGCCAAACCCGT
* * * * * * * *
78071758 CAAATTAACACGGGCGTTCGACACGCCCTTGTCTAGCACCCGTGGTCAAACCTGT
1 CAAATTAACACGGGCGTGCGACACACCCGTGCCTAGAAACCGTGGCCAAACCCGT
*
78071813 TAAATTAACA
1 CAAATTAACA
78071823 AGTGCATGGG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (55 bp):
CAAATTAACACGGGCGTGCGACACACCCGTGCCTAGAAACCGTGGCCAAACCCGT
Found at i:78072384 original size:16 final size:16
Alignment explanation
Indices: 78072363--78072394 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
78072353 TGGTTAGGAT
78072363 AGTTGAAATAATCATG
1 AGTTGAAATAATCATG
78072379 AGTTGAAATAATCATG
1 AGTTGAAATAATCATG
78072395 CCTTTTGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (16 bp):
AGTTGAAATAATCATG
Found at i:78082641 original size:18 final size:18
Alignment explanation
Indices: 78082620--78082663 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
78082610 ATAATCAGTA
78082620 ATTCAGTAACAGTCAAAT
1 ATTCAGTAACAGTCAAAT
* *
78082638 ATTCAGTAGCAGTCAATT
1 ATTCAGTAACAGTCAAAT
78082656 ATTCAGTA
1 ATTCAGTA
78082664 TCTTTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (18 bp):
ATTCAGTAACAGTCAAAT
Found at i:78082891 original size:51 final size:53
Alignment explanation
Indices: 78082779--78082897 Score: 134
Period size: 51 Copynumber: 2.3 Consensus size: 53
78082769 CTGTAACGGT
* ***
78082779 AACAGTAATAGTAACAGTAGCGGTACATAGAGTACCTCATCGGAACAAATTTGG
1 AACAGTAATAGTAACAGTAGAGGTA-ATAGAGTACCTCATCGGAACAAATCCAG
* **
78082833 AACAGTAATAGTAACAGTA-AGGT-ATAGAGTACCTCTTCGGAATGAATCCAG
1 AACAGTAATAGTAACAGTAGAGGTAATAGAGTACCTCATCGGAACAAATCCAG
* *
78082884 AATAGTAACAGTAA
1 AACAGTAATAGTAA
78082898 AGCGACAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
51 34 0.61
53 3 0.05
54 19 0.34
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (53 bp):
AACAGTAATAGTAACAGTAGAGGTAATAGAGTACCTCATCGGAACAAATCCAG
Found at i:78084165 original size:16 final size:16
Alignment explanation
Indices: 78084141--78084184 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
78084131 TTTAATTTGT
*
78084141 TTAATAATATAATATAA
1 TTAATAATATAAT-CAA
78084158 TT-ATAATATAATCAA
1 TTAATAATATAATCAA
78084173 TTAATAATATAA
1 TTAATAATATAA
78084185 AATATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 4 0.16
16 19 0.76
17 2 0.08
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
TTAATAATATAATCAA
Found at i:78096158 original size:14 final size:16
Alignment explanation
Indices: 78096134--78096165 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
78096124 TTAAAAGAAC
78096134 ATTTCTTAAAA-CCAA
1 ATTTCTTAAAACCCAA
78096149 ATTT-TTAAAACCCAA
1 ATTTCTTAAAACCCAA
78096164 AT
1 AT
78096166 CCATAGCCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (16 bp):
ATTTCTTAAAACCCAA
Found at i:78105326 original size:31 final size:29
Alignment explanation
Indices: 78105257--78105326 Score: 68
Period size: 31 Copynumber: 2.3 Consensus size: 29
78105247 GGGTACAAGT
* * *
78105257 TTTTTTTTTATTCTAATTTGATATTTGAG
1 TTTTTTTTAATTCTAATTTAATATTTGAA
* *
78105286 TTTAATTTTAATGTTTAATTTAATATTTGAAA
1 TTT-TTTTTAAT-TCTAATTTAATATTTG-AA
78105318 TTTTTTTTA
1 TTTTTTTTA
78105327 TTAAGTAGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
29 3 0.09
30 6 0.19
31 19 0.59
32 4 0.12
ACGTcount: A:0.27, C:0.01, G:0.07, T:0.64
Consensus pattern (29 bp):
TTTTTTTTAATTCTAATTTAATATTTGAA
Found at i:78106810 original size:38 final size:38
Alignment explanation
Indices: 78106768--78106841 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
78106758 ATTGATGCAT
*
78106768 AAAATGATTTTGATTGTGTGTGA-AAATATCACGTGTTG
1 AAAATGATTTTGATTGTGTAT-ATAAATATCACGTGTTG
* *
78106806 AAAATTATTTTGATTGTGTATATAAATATCATGTGT
1 AAAATGATTTTGATTGTGTATATAAATATCACGTGT
78106842 CTAGGTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.34, C:0.04, G:0.19, T:0.43
Consensus pattern (38 bp):
AAAATGATTTTGATTGTGTATATAAATATCACGTGTTG
Found at i:78107626 original size:15 final size:15
Alignment explanation
Indices: 78107608--78107637 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
78107598 GTACCATCTA
*
78107608 AATATGTTCTTGAAT
1 AATATGTCCTTGAAT
78107623 AATATGTCCTTGAAT
1 AATATGTCCTTGAAT
78107638 GGGCTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (15 bp):
AATATGTCCTTGAAT
Found at i:78109261 original size:33 final size:33
Alignment explanation
Indices: 78109207--78109298 Score: 121
Period size: 33 Copynumber: 2.7 Consensus size: 33
78109197 GGTTCTGGGC
* *
78109207 TAGGCCGTGTGGGTCATACGGGCAAGGCCAAATA
1 TAGG-CGTGTGGGCCACACGGGCAAGGCCAAATA
*
78109241 TAGGTGTGTGGGCCACACGGGCAAGGCCAAATA
1 TAGGCGTGTGGGCCACACGGGCAAGGCCAAATA
* *
78109274 TGGGCGTGTGGGCCTACATGGGCAA
1 TAGGCGTGTGGGCC-ACACGGGCAA
78109299 ACCACACGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
33 38 0.75
34 13 0.25
ACGTcount: A:0.24, C:0.21, G:0.38, T:0.17
Consensus pattern (33 bp):
TAGGCGTGTGGGCCACACGGGCAAGGCCAAATA
Found at i:78109777 original size:19 final size:19
Alignment explanation
Indices: 78109749--78109792 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
78109739 ATTTTGGCAT
* *
78109749 ATCTGCTATCTGAATCTGA
1 ATCTGATATCTAAATCTGA
78109768 ATCTGATATCTAAATCTGA
1 ATCTGATATCTAAATCTGA
*
78109787 GTCTGA
1 ATCTGA
78109793 AATTAAGTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (19 bp):
ATCTGATATCTAAATCTGA
Found at i:78114157 original size:40 final size:40
Alignment explanation
Indices: 78114120--78114305 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
78114110 GCTACTCGTT
* *
78114120 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
78114160 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
78114200 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
78114240 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
78114281 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
78114306 CATCATTCAA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:78122925 original size:23 final size:22
Alignment explanation
Indices: 78122899--78122972 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 22
78122889 TTGAATTGGC
78122899 TTGTAAATGATATGTGTTGGGTT
1 TTGTAAATGATATGTGTT-GGTT
** *
78122922 TTGTTTATAGCTATGTGAATTGG-T
1 TTGTAAAT-GATATGTG--TTGGTT
78122946 TTGTAAATGATATGTGTTTGGTT
1 TTGTAAATGATATGTG-TTGGTT
78122969 TTGT
1 TTGT
78122973 TTATAGCTAT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
22 4 0.10
23 18 0.45
24 14 0.35
25 2 0.05
26 2 0.05
ACGTcount: A:0.20, C:0.01, G:0.27, T:0.51
Consensus pattern (22 bp):
TTGTAAATGATATGTGTTGGTT
Found at i:78122936 original size:24 final size:23
Alignment explanation
Indices: 78122909--78122985 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 23
78122899 TTGTAAATGA
78122909 TATGTGTTGGGTTTTGTTTATAGC
1 TATGTGTT-GGTTTTGTTTATAGC
** *
78122933 TATGTGAATTGG-TTTGTAAAT-GA
1 TATGTG--TTGGTTTTGTTTATAGC
78122956 TATGTGTTTGGTTTTGTTTATAGC
1 TATGTG-TTGGTTTTGTTTATAGC
78122980 TATGTG
1 TATGTG
78122986 AATTGGCTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
22 4 0.10
23 14 0.33
24 20 0.48
25 2 0.05
26 2 0.05
ACGTcount: A:0.18, C:0.03, G:0.27, T:0.52
Consensus pattern (23 bp):
TATGTGTTGGTTTTGTTTATAGC
Found at i:78122959 original size:47 final size:47
Alignment explanation
Indices: 78122890--78122994 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
78122880 TTTAGCCATT
78122890 TGAATTGGCTTGTAAATGATATGTGTTGGGTTTTGTTTATAGCTATG
1 TGAATTGGCTTGTAAATGATATGTGTTGGGTTTTGTTTATAGCTATG
* *
78122937 TGAATTGGTTTGTAAATGATATGTGTTTGGTTTTGTTTATAGCTATG
1 TGAATTGGCTTGTAAATGATATGTGTTGGGTTTTGTTTATAGCTATG
78122984 TGAATTGGCTT
1 TGAATTGGCTT
78122995 ATTTTTTCAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.21, C:0.04, G:0.27, T:0.49
Consensus pattern (47 bp):
TGAATTGGCTTGTAAATGATATGTGTTGGGTTTTGTTTATAGCTATG
Found at i:78136621 original size:21 final size:22
Alignment explanation
Indices: 78136574--78136621 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
78136564 AAAATTATAC
78136574 TAAAGAATAATATATAATATAGA
1 TAAA-AATAATATATAATATAGA
78136597 -AAAAATAATA-ATAATAATA-A
1 TAAAAATAATATATAAT-ATAGA
78136617 TAAAA
1 TAAAA
78136622 GGCTAACCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 14 0.61
22 3 0.13
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (22 bp):
TAAAAATAATATATAATATAGA
Found at i:78141575 original size:702 final size:695
Alignment explanation
Indices: 78139723--78141607 Score: 2121
Period size: 694 Copynumber: 2.7 Consensus size: 695
78139713 ATTTGCTGTT
* * * *
78139723 AGAGTTAGAGAAGATTCATAATGTATTCCACATATCGAT-TCTATGACGGTAT-AGATCAGATCT
1 AGAGTTAGAAAAGATTCATAATGTATTCCACATATCGATGT-TAAGACGGTATCA-ATTAGATCC
* * *
78139786 TTCACAGGTAATATCCCCAGTTGATGTTGGAATTCAACCTGATACGACATATAGTGAAGAACAGA
64 TTCACAGGTAATATCCCCAGTTGATGTTGGAATTCAACCTGATATGA-A-ACAGTGAAGAACTGA
* *
78139851 TCAAAATTATATCTCAGGAAGTTAAATATTTGAGAAATCAAGGTATAGCTTTAGTTAAAGGTCTT
127 TCAAAATTATATCTCAGGAAGTTAAAGATTTGAGAAAT-AAGGTATAGCTTTAGTTAAAGTTCTT
* *** *
78139916 TGGTAATGACACAGAATCGGAGAGGTGTCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTT
191 TGGTAA-CA-ACAGAATAAAAGAGGT-TCCTGGGAACCAGAAGAAGCTATGAAAGTGCAACACTT
* * * * * *
78139981 GAACTTATTTTTTGGTAAGATACTCAGGGACGAAACTTCCCTTAGGGG-GAGTTTTGTAACAGCG
253 GAACTTATTTTCTGGTAAGATATTGAGGGACGAAAATTCCTTTAGGGGAGAG--TTGTAACAGCC
* * ** * *
78140045 CGTTTGTAGTGAAGTTGGAGCAGTGGTTTCGGGACCACAAA-TCTGACGAAGCTTTATAGGGTCA
316 CGTTT-TAGTGAA-ATAGAGCAGTGGTTTTAGGACCACAAATTC-GACGAAGCTTTGTAGGGTCG
* ** * * *
78140109 AAAGTGTCGAATTTTGA-TATAATAGAAAGAGCTGAGCGAGAAAAAGTT-TTCCTGTGTTGATTT
378 AAAGTGTC-AAATTCCATTATAATGGAAAGAGCTGAGCAAGAAAAAGTTATTTC-GTGTTGATTT
* * * * * * *
78140172 GATTTGAGAAACCGAAGAGAAGTTCAAAGTGATATGTGATAGCTTGAAAGTAGCTTTTGATTGAC
441 GATTTGAGAAACTGAAGAAAAGGTCAAAGTGATACGTGATAACTTGAAAGCAGCTTTTGATCGAC
* * * * *
78140237 ATAAATCTTACACAGATTTGAAAAGAAAAGATATTGAATTTCAAGTGGCGTCATAGTATTTTTTG
506 AAAAATCTTACACAGATCTGAAAAGAAAAGATATTGAATTTCAAGTAGCGACACAGTATTTTTTG
78140302 AAAGTATTGCCTTGGAAGAAAATTCTTTGATTTGGTCAAAATGGAAAGCTTAGTTTATGGTTTAT
571 AAAGTATTGCCTTGGAAGAAAATTCTTTGATTTGGTCAAAATGGAAAGCTTAGTTTATGGTTTAT
** * * ** * * * *
78140367 CTGGCCATTTGAGATCATTGGGAGAACTAGGCTAGTATTTTATTGGTTATCTTTTCCGTT
636 CAAGCCATTTGAGATCATTGAGAGAACTAGGCCAGTAGCTTATTGGTTAGCTTTGCCATC
* * * * ** *
78140427 AGAGTTAGAAACA-ATTCATAATTTATTCAACGTATCGATGTTAAGTCGGTATCGGTTAGATTCT
1 AGAGTTAGAAA-AGATTCATAATGTATTCCACATATCGATGTTAAGACGGTATCAATTAGATCCT
* * *
78140491 GCACGGGTAATATCCCCAGTTGATG-TAGACATTCAACCTGATATG--AC-GT-ACAG---T-AT
65 TCACAGGTAATATCCCCAGTTGATGTTGGA-ATTCAACCTGATATGAAACAGTGA-AGAACTGAT
* * * *
78140547 CAGAACTATATCTC-GAGAAGTTAAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTT
128 CAAAATTATATCTCAG-GAAGTTAAAGATTTGAGAAAT-AAGGTATAGCTTTAGTTAAAGTTCTT
* * * * * * * *
78140611 TGGCAACAACACGGAATAAAAGAAGATGCATGGGAACCAAAAAAAGATATGAAATTGCAACACTT
191 TGGTAACAACA--GAATAAAAG-AGGTTCCTGGGAACCAGAAGAAGCTATGAAAGTGCAACACTT
* * * * *
78140676 GAGCTTATTTTCTGGTAAGATTTTTG-GGGACGAATATTCCTATAGGGGGAGAGTTGTAATAG-C
253 GAACTTATTTTCTGGTAAGA-TATTGAGGGACGAAAATTCCTTTA-GGGGAGAGTTGTAACAGCC
* * * * * * * *
78140739 CATTTTCAGTGGAATTGGGATAGTGG-TTTCGAGACCACAAATCCGACGAAGCTTTGTATGGTCG
316 CGTTTT-AGTGAAATAGAG-CAGTGGTTTTAG-GACCACAAATTCGACGAAGCTTTGTAGGGTCG
* * * * * *
78140803 AAAGTGTCGAAGTCCATTATACTGGACAGAGTTGAGCAAGAAAAAGTTATTTGGTGTTGATTTGA
378 AAAGTGTCAAATTCCATTATAATGGAAAGAGCTGAGCAAGAAAAAGTTATTTCGTGTTGATTTGA
* * * *
78140868 TTTGAGAAACTGAAGAAAAGGTCAAACTGATACATGATAACTTGACAGCAG-TTTTGGATCGATA
443 TTTGAGAAACTGAAGAAAAGGTCAAAGTGATACGTGATAACTTGAAAGCAGCTTTT-GATCGACA
*
78140932 AAAATCTTACGCTA-ATCTGAAAAGAAAAGATATTGAATTTCAAGTAAGCGACACAGTA-TTTTT
507 AAAATCTTACAC-AGATCTGAAAAGAAAAGATATTGAATTTCAAGT-AGCGACACAGTATTTTTT
* * *
78140995 GAAAGTGTTGCCTTGGAAGAAAGTTCTTTGATTTGGTCGAAAA-GGAAAGCTTAGTTTGTGGTTT
570 GAAAGTATTGCCTTGGAAGAAAATTCTTTGATTTGGTC-AAAATGGAAAGCTTAGTTTATGGTTT
* *
78141059 ATCAAGCCATTTGAGATCATTGAGAGAATTGGGCCAGTAGCTTATTGGTTAGCTTTGCCATC
634 ATCAAGCCATTTGAGATCATTGAGAGAACTAGGCCAGTAGCTTATTGGTTAGCTTTGCCATC
* *
78141121 AGAGTTAGAAAAGATTCATAATGTATTCCACATACCGATGTTACG-CGGTATCAATTAGATCCTT
1 AGAGTTAGAAAAGATTCATAATGTATTCCACATATCGATGTTAAGACGGTATCAATTAGATCCTT
* ** *
78141185 CACATGTAATATCCCTTGTTGATGTTGGAATTCAACCTAATATGATAAACAGTGAAGAACTGATC
66 CACAGGTAATATCCCCAGTTGATGTTGGAATTCAACCTGATATG--AAACAGTGAAGAACTGATC
* * *
78141250 AAAATTCTAGCTCAGGAAGTGAAAGATTTGAGAAATAGAGGTATAGCTTTAGTTAAAGTTCTTTG
129 AAAATTATATCTCAGGAAGTTAAAGATTTGAGAAATA-AGGTATAGCTTTAGTTAAAGTTCTTTG
* *
78141315 GTAACAACATGAAATTAAAGAGGCTTCCTGGGAACCAGAAGAAGCTATGAAAGTGCAGA-AATTG
193 GTAACAACA-G-AATAAAAGAGG-TTCCTGGGAACCAGAAGAAGCTATGAAAGTGCA-ACACTTG
*
78141379 AACTTATTTTCTAGTAAGATATTGAGGGACGAAAATTCCTTTAGGGGAGAGTTGTAACAGCCCGT
254 AACTTATTTTCTGGTAAGATATTGAGGGACGAAAATTCCTTTAGGGGAGAGTTGTAACAGCCCGT
* * *
78141444 TTATAGTGAAATCAGAGCAGTGGTTTTAGGACCAAAAATTCGACAAAGCTTTGTAGGGTTGAAAG
319 TT-TAGTGAAAT-AGAGCAGTGGTTTTAGGACCACAAATTCGACGAAGCTTTGTAGGGTCGAAAG
* *
78141509 TGTCAAATTCCATTAAAATGGAAATAGCTGAGCAAGAAAAAGTTATTTCGTGTTGATTTGATTTG
382 TGTCAAATTCCATTATAATGGAAAGAGCTGAGCAAGAAAAAGTTATTTCGTGTTGATTTGATTTG
78141574 AGAAACTGAAGAAAAGGTCAAAGTGATACGTGAT
447 AGAAACTGAAGAAAAGGTCAAAGTGATACGTGAT
78141608 TGTAACATCC
Statistics
Matches: 973, Mismatches: 164, Indels: 90
0.79 0.13 0.07
Matches are distributed among these distances:
693 67 0.07
694 328 0.34
695 156 0.16
696 9 0.01
697 5 0.01
698 5 0.01
699 5 0.01
700 1 0.00
701 25 0.03
702 273 0.28
703 12 0.01
704 85 0.09
705 2 0.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (695 bp):
AGAGTTAGAAAAGATTCATAATGTATTCCACATATCGATGTTAAGACGGTATCAATTAGATCCTT
CACAGGTAATATCCCCAGTTGATGTTGGAATTCAACCTGATATGAAACAGTGAAGAACTGATCAA
AATTATATCTCAGGAAGTTAAAGATTTGAGAAATAAGGTATAGCTTTAGTTAAAGTTCTTTGGTA
ACAACAGAATAAAAGAGGTTCCTGGGAACCAGAAGAAGCTATGAAAGTGCAACACTTGAACTTAT
TTTCTGGTAAGATATTGAGGGACGAAAATTCCTTTAGGGGAGAGTTGTAACAGCCCGTTTTAGTG
AAATAGAGCAGTGGTTTTAGGACCACAAATTCGACGAAGCTTTGTAGGGTCGAAAGTGTCAAATT
CCATTATAATGGAAAGAGCTGAGCAAGAAAAAGTTATTTCGTGTTGATTTGATTTGAGAAACTGA
AGAAAAGGTCAAAGTGATACGTGATAACTTGAAAGCAGCTTTTGATCGACAAAAATCTTACACAG
ATCTGAAAAGAAAAGATATTGAATTTCAAGTAGCGACACAGTATTTTTTGAAAGTATTGCCTTGG
AAGAAAATTCTTTGATTTGGTCAAAATGGAAAGCTTAGTTTATGGTTTATCAAGCCATTTGAGAT
CATTGAGAGAACTAGGCCAGTAGCTTATTGGTTAGCTTTGCCATC
Found at i:78142904 original size:45 final size:41
Alignment explanation
Indices: 78142826--78142924 Score: 108
Period size: 45 Copynumber: 2.3 Consensus size: 41
78142816 AATATGTGTT
* ** * *
78142826 TTCGTGTAAGACCACGTCTGGGATGTTGGCATCGATATATGTTA
1 TTCGTGTAAGACCACGTCTAGGACATTGACATCG-TAT-T-TGA
*
78142870 TTACGTGTAAGACCATGTCTAGGACATTGACATCGTATTTGA
1 TT-CGTGTAAGACCACGTCTAGGACATTGACATCGTATTTGA
78142912 TTCGTGTAAGACC
1 TTCGTGTAAGACC
78142925 CTATCTGAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
41 11 0.23
42 4 0.08
43 1 0.02
44 5 0.10
45 27 0.56
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (41 bp):
TTCGTGTAAGACCACGTCTAGGACATTGACATCGTATTTGA
Found at i:78158291 original size:22 final size:24
Alignment explanation
Indices: 78158233--78158280 Score: 78
Period size: 26 Copynumber: 1.9 Consensus size: 24
78158223 TAATTTGATG
78158233 AAATGACTGATATACCCCTATGAGGT
1 AAATGACTGATATACCCCTAT--GGT
78158259 AAATGACTGATATACCCCTATG
1 AAATGACTGATATACCCCTATG
78158281 TAATGTATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 1 0.05
26 21 0.95
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (24 bp):
AAATGACTGATATACCCCTATGGT
Found at i:78169180 original size:703 final size:703
Alignment explanation
Indices: 78167784--78170064 Score: 2676
Period size: 703 Copynumber: 3.2 Consensus size: 703
78167774 CTAAGATATT
* * ** * * * ** *
78167784 GAGTTAGAAAAGATTCATAATGTATTCAACATATCGATGTTATGATGGTATCAATCGGATCC-TA
1 GAGTTAGGAAAGATTCATAATGTATTCCATGTATCGATGTTACGATGATATCGATTAGATCCTTC
* * *
78167848 AGCAGGTAATAT-CCCAATTTGATGTTGACATTCAACCTGATATGATGTATAGTGAAGAACCGAT
66 A-CAGGTAATATCCCCAA-TTGATGTTGAAATTCAACCTGATATGACGTACAGTGAAGAACCGAT
* * *
78167912 CAGAATTCTAGCTCGGAAAGTTAAAGTATTGAGAAATAAAAGTATAGCTTTAGTTAAATTTCTCT
129 CAGAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTCT
*
78167977 GGCAATGACACAGAATAGAAGAGGCTTCTTGGGAACCAGAAGAAG-TTATGAAAGTGCAATACTT
194 GGCAATGACACAGAATAGAAGAGGCTTCCTGGGAA-CAGAAGAAGCTT-TGAAAGTGCAATACTT
* * * * * * *
78168041 GAGCTTATTTTCTGGTAAGATTTTTGGGGACAAAAATTCCTTTAGGGGGAGAGTTGTAACAACCT
257 GAACTTATTTTCTAGTAAGATTTTTAGGGACGAAAATTCCTTTAAGGGGAGAGTTGTAACAGCCC
* * * ** *** * * *
78168106 GTTTTCTGTGAAATCGGGATAGTGGTTTTGAGACCACAAATTCAACAAAGCTTTGTATGGTCAAA
322 ATTTTCAGTGAAGTCGAAATAGTGGTTTCCTGACCACAAATCCAACGAAGCTTTGCATGGTCAAA
* * * *
78168171 AGTTTCGAA-TTCTGTTATATTGGACAGAGTTGAGAGAGAAAAAGTTATTCAGTGTTGATTTGAT
387 AGTGTCGAATTTC-GTTATACTGGACAGAGCTGAGCGAGAAAAAGTTATTCAGTGTTGATTTGAT
* * *
78168235 TCAAGAAACTGAAAAAAGGATAAAGTGATACGTGATAGCTTGAAAGTAATTTTGGATCGA-TAAA
451 TTAAGAAACTGAAAAAAGGTTAAAGTGATACGTGATAGCTTGAAAGAAATTTTGGATCGACTAAA
** * * * * *
78168299 AATCTTACCCTGATTTAAAAAGAAAATATATTGGATTTGAAGTCGGCGACACAGTATTTCTGAAA
516 AATCTTATGCTGATTTGAAAAGAAAAGATATTGAATTTCAAGTCAGCGACACAGTATTTCTGAAA
* *
78168364 GTATTGCCTTGGAAGAAAGTTCTTTGATTTGATT-GAAAAGGAAAACTTAGTTTGTGGTTTATCG
581 GTATTGCCTTGGAAGAAAGTTCTTTGATTT-ATTCGAAAAGGAAAGCTTAGTCTGTGGTTTATCG
* * * * * * *
78168428 AGATGTTTGAAATTATTAAGAGAATTGGGCTAGTAGCTTATCGGTTAGCTTTGGCATAA
645 AGCTGTTTGAGATCATTGAGAGAATTGGGCTAGTAGCTTATTGGTTAGCTTTGCCATCA
* * *
78168487 GACG-TAGGAAAGATTCATAATGTATACCGTGTATCGATGTTACGATGATATTGATTAGATCCTT
1 GA-GTTAGGAAAGATTCATAATGTATTCCATGTATCGATGTTACGATGATATCGATTAGATCCTT
* * * **
78168551 CACATGTAATATCCCCAATTGATGTTGAAATGCAACCTAATATGACGTACAGTGAAGAACTTATC
65 CACAGGTAATATCCCCAATTGATGTTGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATC
* * * * *
78168616 ACAATTCTAGCTTGGGAAGTTAAAGAATTGAGAAATAAAACTATAGCTTTAGCTAAAGTTCTCTA
130 AGAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTCTG
** * * *
78168681 GCAATGACATGGAATAGAAGAGGCTGCCTGGGAACTAGAAGAAGCTTTGAAAGTGTAATAGTTGA
195 GCAATGACACAGAATAGAAGAGGCTTCCTGGGAAC-AGAAGAAGCTTTGAAAGTGCAATACTTGA
* * *
78168746 ACTTATTTTCTAGTAAGATTTTTTGGGATGAAAATTCCTTTAAGGGGAGAGTTGTAATAGCCCAT
259 ACTTATTTTCTAGTAAGATTTTTAGGGACGAAAATTCCTTTAAGGGGAGAGTTGTAACAGCCCAT
* ** * * *
78168811 TTTCAGTGAAGTCGAAACAAAGGTTTCCTGATCACAAACCCAACGAAGCTTTGCATGGTCGAAAG
324 TTTCAGTGAAGTCGAAATAGTGGTTTCCTGACCACAAATCCAACGAAGCTTTGCATGGTCAAAAG
* *
78168876 TGTCGAATTTCGTTAAACTGGACAGAGCTAAGCGAGAAAAAGTTATTCAGTGTTGATTTGATTTA
389 TGTCGAATTTCGTTATACTGGACAGAGCTGAGCGAGAAAAAGTTATTCAGTGTTGATTTGATTTA
* *
78168941 A-AAAATCGAAGAATAGGTTAAAGTGATACGTGATAGCTTGAAAGAAATTTTGGATC-ACTAAAA
454 AGAAACT-GAA-AAAAGGTTAAAGTGATACGTGATAGCTTGAAAGAAATTTTGGATCGACTAAAA
* *
78169004 ATCCTATGCTGATTTGAAAAGAAAAGATCTTGAATTTCAAGTCAGCGACACAGT-TTTCTGAAAG
517 ATCTTATGCTGATTTGAAAAGAAAAGATATTGAATTTCAAGTCAGCGACACAGTATTTCTGAAAG
* * * * *
78169068 TATTGTCTGGGAAGAAAGTTCTTTGATTTTTTCGAAAAGGAAAGCTTAGTCTGTGGTTTATTGGG
582 TATTGCCTTGGAAGAAAGTTCTTTGATTTATTCGAAAAGGAAAGCTTAGTCTGTGGTTTATCGAG
* * * * * * * *
78169133 CCGCTTGAGATGATTGAGAGATTTGGGCCAGTAACTTATTTGTTAGCTTTACCATCA
647 CTGTTTGAGATCATTGAGAGAATTGGGCTAGTAGCTTATTGGTTAGCTTTGCCATCA
* ** * * * *
78169190 GAGTTAGAAAAGATTCATAATGTATTCCACATATCGATGTTATGA-CAGTATCGATCAGATACTT
1 GAGTTAGGAAAGATTCATAATGTATTCCATGTATCGATGTTACGATGA-TATCGATTAGATCCTT
* * * * * *
78169254 CACAGGTAATATCCCCAGTTGATATTGAAATTCAACCTGATATGACATATAGTGAAGAACTGGTC
65 CACAGGTAATATCCCCAATTGATGTTGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATC
* * * * *
78169319 AAAATTCTAGCTCGGGAAGTTAAAGATTTGATAAATAAAGGT-CA-CTTTAGTTAAAGTTCAT-T
130 AGAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTC-TCT
* * * * *
78169381 GGTAATGACACAGAATCGAAGAAGCTTTCTGGGAAACAGAAGTAGCTATT-AAAGTGCAATACTT
194 GGCAATGACACAGAATAGAAGAGGCTTCCTGGG-AACAGAAGAAGCT-TTGAAAGTGCAATACTT
* **** * * * **
78169445 GAACTTATTTTCTATTAAGATACACAAGAACGAAAATTCCTTTAAAGGGAGAGTTGTAACAGTGC
257 GAACTTATTTTCTAGTAAGATTTTTAGGGACGAAAATTCCTTTAAGGGGAGAGTTGTAACAGCCC
* ** * *
78169510 ATTTTCAGTGAAGTC-AGAATAGTGGTTTCTTGACCACAAATCTGACGAAG-TTTTCTATGGTTA
322 ATTTTCAGTGAAGTCGA-AATAGTGGTTTCCTGACCACAAATCCAACGAAGCTTTGC-ATGGTCA
* * * * * *
78169573 AAAGTGTTGGATTTCGTTATACTAGACAGAGCTGAGCGAGAAAAATTTTTTCGGTGTTGATTTGA
385 AAAGTGTCGAATTTCGTTATACTGGACAGAGCTGAGCGAGAAAAAGTTATTCAGTGTTGATTTGA
* * * * * *
78169638 TTTGAGGAACTGAAAAAATGGTCAAAGTGATACGTGATAGTTTGAAAGCAGTTTTGGATCGAC-A
450 TTTAAGAAACTGAAAAAA-GGTTAAAGTGATACGTGATAGCTTGAAAGAAATTTTGGATCGACTA
* * * *
78169702 AAAATCTTATGCAGATTTGAAAAGAAAAGATATTGAATTTCAAGTCAGTGACACGGTATTTCTAA
514 AAAATCTTATGCTGATTTGAAAAGAAAAGATATTGAATTTCAAGTCAGCGACACAGTATTTCTGA
* *** *
78169767 AAGTATTGCCTTGGAATAAAGTTCTTTGATTTGGCCGAAAAGGAAAGCTTAGTCCGTGGTTTATC
579 AAGTATTGCCTTGGAAGAAAGTTCTTTGATTTATTCGAAAAGGAAAGCTTAGTCTGTGGTTTATC
* * *
78169832 GTGCTGTTTGAGATCATTGAGAGAATTGGGCTAGTAGCTTATTGGTTAGCTTAGCCGTCA
644 GAGCTGTTTGAGATCATTGAGAGAATTGGGCTAGTAGCTTATTGGTTAGCTTTGCCATCA
* * *
78169892 GAGTTA-GAAGATATTCATAATGTATTCCATGTATCGATGTTACAACTG-TATCAATTAGATCCT
1 GAGTTAGGAA-AGATTCATAATGTATTCCATGTATCGATGTTACGA-TGATATCGATTAGATCCT
* * * * *
78169955 TTATAGGTAATATCTCCAGTTGATGTTGAAATTCAACCTTATATGACGTACAGTGAAGAACCGAT
64 TCACAGGTAATATCCCCAATTGATGTTGAAATTCAACCTGATATGACGTACAGTGAAGAACCGAT
*
78170020 CAGAATTCTAGCTCGAGAAGTTAAAGAATTGAGAAATAAAAGTAT
129 CAGAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATAAAAGTAT
78170065 CGATTCTGTT
Statistics
Matches: 1323, Mismatches: 230, Indels: 50
0.83 0.14 0.03
Matches are distributed among these distances:
700 8 0.01
701 314 0.24
702 275 0.21
703 621 0.47
704 105 0.08
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (703 bp):
GAGTTAGGAAAGATTCATAATGTATTCCATGTATCGATGTTACGATGATATCGATTAGATCCTTC
ACAGGTAATATCCCCAATTGATGTTGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCA
GAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTCTGG
CAATGACACAGAATAGAAGAGGCTTCCTGGGAACAGAAGAAGCTTTGAAAGTGCAATACTTGAAC
TTATTTTCTAGTAAGATTTTTAGGGACGAAAATTCCTTTAAGGGGAGAGTTGTAACAGCCCATTT
TCAGTGAAGTCGAAATAGTGGTTTCCTGACCACAAATCCAACGAAGCTTTGCATGGTCAAAAGTG
TCGAATTTCGTTATACTGGACAGAGCTGAGCGAGAAAAAGTTATTCAGTGTTGATTTGATTTAAG
AAACTGAAAAAAGGTTAAAGTGATACGTGATAGCTTGAAAGAAATTTTGGATCGACTAAAAATCT
TATGCTGATTTGAAAAGAAAAGATATTGAATTTCAAGTCAGCGACACAGTATTTCTGAAAGTATT
GCCTTGGAAGAAAGTTCTTTGATTTATTCGAAAAGGAAAGCTTAGTCTGTGGTTTATCGAGCTGT
TTGAGATCATTGAGAGAATTGGGCTAGTAGCTTATTGGTTAGCTTTGCCATCA
Found at i:78170526 original size:484 final size:484
Alignment explanation
Indices: 78169588--78170548 Score: 1299
Period size: 484 Copynumber: 2.0 Consensus size: 484
78169578 GTTGGATTTC
* * * * * *
78169588 GTTATACTAGACAGAGCTGAGCGAGAAAAATTTTTTCGGTGTTGATTTGATTTGAGGAACTGAAA
1 GTTATAATAGACAGAGCTAAGCGAGAAAAATTATTTCGGTGTTGATTTGATTTAAGAAACTCAAA
* * *
78169653 AAATGGTCAAAGTGATACGTGATAGTTTGAAAGCAGTTTTGGATCGACAAAAATCTTATGCAGAT
66 AAATGGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGAT
* ** * *
78169718 TTGAAAAGAAAAGATATTGAATTTCAAGTCAGTGACACGGTATTTCTAAAAGTATTGCCTTGGAA
131 TTGAAAAGAAAAGATATTGAATTTCAAGTCAGCGACACAATATTTCTAAAAGGATTGCCTTAGAA
* ** * * * *
78169783 TAAAGTTCTTTGATTTGGCCGAAAAGGAAAGCTTAGTCCGTGGTTTATCGTGCTGTTTGAGATCA
196 GAAAGTTCTTCAATTTGGACAAAAAGGAAAGCTTAGTCCGTGGTTTATCGTGCTATTTAAGATCA
* * * * * * *
78169848 TTGAGAGAATTGGGCTAGTAGCTTATTGGTTAGCTTAGCCGTCAGAGTTAGAAGATATTCATAAT
261 TTGAGAGAACTAGGCCAGTAGCTTATCGGTTAGCTTAGCCGTCAGAGTTAGAAAAGATACATAAT
* * * * *
78169913 GTATTCCATGTATCGATGTTACAACTGTATCAATTAGATCCTTTATAGGTAATATCTCCAGTTGA
326 GTATTCCATATATCGATGTTACAACTGTATCAATCAGATCCTTCACACGTAATATCTCCAGTTGA
* * *
78169978 TGTTGAAATTCAACCTTATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTTA
391 TGTTGAAATTCAACCTAATATGACGAACAGTGAAGAACCGATCAAAATTCTAGCTCGAGAAGTTA
78170043 AAGAATTGAGAAATAAAAGTATCGATTCT
456 AAGAATTGAGAAATAAAAGTATCGATTCT
* *
78170072 GTTATAATAGATAGAGCTAAGTGAGAAAAAGTTATTT-GGTGTTGATTTGATTTAAGAAAC-CAA
1 GTTATAATAGACAGAGCTAAGCGAGAAAAA-TTATTTCGGTGTTGATTTGATTTAAGAAACTCAA
* *
78170135 ATAAATGGTCAAAGTGATACGTGATAGCTT-AAATGCAGCTTTGGATTGACAGAAATCTTACGCA
65 A-AAATGGTCAAAGTGATACGTGATAGCTTGAAA-GCAGCTTTGGATCGACAAAAATCTTACGCA
* * *
78170199 GATTTGAATAGAAAAGATATTGAATTTCAAGTC-GACGACATAATATTTCTAAAAGGATTTCCTT
128 GATTTGAAAAGAAAAGATATTGAATTTCAAGTCAG-CGACACAATATTTCTAAAAGGATTGCCTT
*
78170263 AGAAGAAAGTTCTTCAATTTGGACAAAAAGGAAAGCTTAGTCTGTGGTTTATC-TGGCTATTTAA
192 AGAAGAAAGTTCTTCAATTTGGACAAAAAGGAAAGCTTAGTCCGTGGTTTATCGT-GCTATTTAA
* ***
78170327 GATCATTGAGAGAACTAGGCCATTAGCTTATCGGTTAGCTTTTTCGTCAGAGTTAGAAAAGATAC
256 GATCATTGAGAGAACTAGGCCAGTAGCTTATCGGTTAGCTTAGCCGTCAGAGTTAGAAAAGATAC
* * * * *
78170392 ATAATGTATTCCGTATATCGATGTTTCGA-TAGTTTCGATCAGATCCTTCACACGTAATAT-TCC
321 ATAATGTATTCCATATATCGATGTTACAACT-GTATCAATCAGATCCTTCACACGTAATATCTCC
*
78170455 TAGTTGATGTTGAAATTCAACCTAATATGACGAACAGTGAAGAACCTATCAAAATTCTAGCTC-A
385 -AGTTGATGTTGAAATTCAACCTAATATGACGAACAGTGAAGAACCGATCAAAATTCTAGCTCGA
*
78170519 GGAAGTTAAAGAATTGAGACATAAAAGTAT
449 -GAAGTTAAAGAATTGAGAAATAAAAGTAT
78170549 AGCTTTAGTT
Statistics
Matches: 414, Mismatches: 55, Indels: 16
0.85 0.11 0.03
Matches are distributed among these distances:
483 13 0.03
484 396 0.96
485 5 0.01
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (484 bp):
GTTATAATAGACAGAGCTAAGCGAGAAAAATTATTTCGGTGTTGATTTGATTTAAGAAACTCAAA
AAATGGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGAT
TTGAAAAGAAAAGATATTGAATTTCAAGTCAGCGACACAATATTTCTAAAAGGATTGCCTTAGAA
GAAAGTTCTTCAATTTGGACAAAAAGGAAAGCTTAGTCCGTGGTTTATCGTGCTATTTAAGATCA
TTGAGAGAACTAGGCCAGTAGCTTATCGGTTAGCTTAGCCGTCAGAGTTAGAAAAGATACATAAT
GTATTCCATATATCGATGTTACAACTGTATCAATCAGATCCTTCACACGTAATATCTCCAGTTGA
TGTTGAAATTCAACCTAATATGACGAACAGTGAAGAACCGATCAAAATTCTAGCTCGAGAAGTTA
AAGAATTGAGAAATAAAAGTATCGATTCT
Found at i:78171873 original size:703 final size:699
Alignment explanation
Indices: 78170084--78172144 Score: 2514
Period size: 704 Copynumber: 2.9 Consensus size: 699
78170074 TATAATAGAT
* *
78170084 AGAGCTAAGTGAGAAAAAGTTATTTGGTGTTGATTTGATTTAAGAAACCAA-ATAAATGGTCAAA
1 AGAGCTTAGTGAGAAAAAGTTATTTGGTGTTGATTTGATTTGAGAAACCAAGA-AAA-GGTCAAA
* *
78170148 GTGATACGTGATAGCTTAAATGCAGCTTTGGATTGACAGAAATCTTACGCAGATTTGAATAGAAA
64 GTGATACGTGATAGCTTAAA-GCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAGAAA
* * * * * * * *
78170213 AGATATTGAATTTCAAGTCGACGACATAATATTTCTAAAAGGATTTCCTTAGAAGAAAGTTCTTC
128 AGATATTGAATTTCAAGTTGGCGACACAATATTTCTGAAAGTATTACCTTGGAAGAAAGTTCTTT
* * * * * *
78170278 AATTTGGACAAAAAGGAAAGCTTAGTCTGTGGTTTATCTGG-CTATTTAAGATCATTGAGAGAAC
193 GATTTGGCCAAAAAGGAAAGCTTAGTCCGTGGTTTATCAGGTC-ATTTAAGATTATTGAGAGAAT
* * ** * * ***
78170342 TAGGCCATTAGCTTATCGGTTAGCTTTTTCGTCAGAGTTAGAAAAGATACATAATGTATTCCGTA
257 TGGGCCAGTAGCTTATCGGTTAGCTTTACCGTTAGAGTTAGAAAAGATTCATAATGTATTCCACG
* * * *
78170407 TATCGATGTT-TCGATAGTTTCGATCAGATCCTTCACACGTAATATTCCTAGTTGATGTTGAAAT
322 TATCAATGTTAT-GATGGTATCGATCAGATCCTTCACACGTAATATCCCTAGTTGATGTTGAAAT
*
78170471 TCAACCTAATATGACGA-ACAGTGAAGAACCTATCAAAATTCTAGCTCAGGAAGTTAAAGAATTG
386 TCAACCTAATATGAC-ATACAGTGAAGAA-CTATC-AGATTCTAGCTCAGGAAGTTAAAGAATTG
* * * * ** *
78170535 AGACATAAAAGTATAGCTTTAGTTAAAGTTCTCTAGCCACGACACAAAATAGAAGAGGCTACTTG
448 AGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAATAGAAGAGGCTACCTG
* * *
78170600 GGAACCGAAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATTTTTGGGGACA
513 GGAACCG-AAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTCGGGGACG
* * * * * * * *
78170665 AAAATTTCTTTAGAGGGAGAGTTGTAGCTGCCTGTTTTTAGTGAATTCAGAACAGTAGTTTCGGG
577 AAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTTAGTGAAATCAGAACAATGGTTTCGGG
* * *
78170730 ACCACAAATCCGACAAAGCTTTGTATGGTCGAAAGTGTCGAATTTCATTAACCTGGAT
642 ACCACAAATCCGAAAAAGCTTTGTATGGTCAAAAGTGTCGAATTTCATTAACCTGGAC
** * ** * *
78170788 AGAGCTTAGCAAGAAAAAGTTAATCAGTGTTGACTTGATTTGGGAAACCAGAGAAAAGGTCAAAG
1 AGAGCTTAGTGAGAAAAAGTTATTTGGTGTTGATTTGATTTGAGAAACCA-AGAAAAGGTCAAAG
* * * * * *
78170853 TGACACGTGATAGCTTAAAAGTAGCTTTGGATCGACAAAAATCTTACACATATTAGAAAAGAAAA
65 TGATACGTGATAGCTT-AAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAGAAAA
** * * *
78170918 GATATCAAATTTCAAGTTGGCAACACAATATTTCTGAAAGTATTGCCTTGGAAGAAAGTTTTTTG
129 GATATTGAATTTCAAGTTGGCGACACAATATTTCTGAAAGTATTACCTTGGAAGAAAGTTCTTTG
* * ***
78170983 ATGTGGCCAAAAAGGAAAGCTTAGTCCGTGGTTTATCAAGTCATTTTTTATTATTGAGAGAATTG
194 ATTTGGCCAAAAAGGAAAGCTTAGTCCGTGGTTTATCAGGTCATTTAAGATTATTGAGAGAATTG
* * *
78171048 GGCCAGTAGCTTATCGGTTAGCTTTACCGTTAGAGTTAGAAAAGATTTATAATGTATTCAACGCA
259 GGCCAGTAGCTTATCGGTTAGCTTTACCGTTAGAGTTAGAAAAGATTCATAATGTATTCCACGTA
* * * * * *
78171113 T-AGATGTTACGATGATATCGATCAGGTCCTTCACATGTAATATCCTTACTTGATGTTGAAATTC
324 TCA-ATGTTATGATGGTATCGATCAGATCCTTCACACGTAATATCCCTAGTTGATGTTGAAATTC
* *
78171177 AA-CTAGATATGACATACAATGAAGAACTGATCAGATGTCTAGAT-AGGGAAGTTAAAGAATTGA
388 AACCTA-ATATGACATACAGTGAAGAACT-ATCAGAT-TCTAGCTCA-GGAAGTTAAAGAATTGA
* * * * *
78171240 GAAATAAAAGTATAGCTTTAGTTTAAAATTCTTTGGCAATGACACGGAATAAAAGAGGCTGCCTA
449 GAAATAAAAGTATAGCTTTAG-TTAAAGTTCTTTGGCAACGACACGGAATAGAAGAGGCTACCTG
* * * *
78171305 GGAACCAGAAGAAGTTATGAATGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTCGAGGATG
513 GGAACC-GAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTCGGGGACG
* * * *
78171370 AAAATTCCTTTTGGGGGAGAGTTGTAACAGCCCATTTTTAGTGAAATCAAAACAATGGTTTTGGG
577 AAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTTAGTGAAATCAGAACAATGGTTTCGGG
* * *
78171435 ACCACATATCC-AAAGAAGCTTTGTATGGTCAAAAGTGTGGAA-TTCTGTTATA-CTGG-C
642 ACCACAAATCCGAAA-AAGCTTTGTATGGTCAAAAGTGTCGAATTTC-ATTA-ACCTGGAC
*
78171492 AGAG-TTGAGTGAGAAAAAGTTATTTGGTGTTGATTTGACTTGAGAAACCGAAGAAAAGGTCAAA
1 AGAGCTT-AGTGAGAAAAAGTTATTTGGTGTTGATTTGATTTGAGAAACC-AAGAAAAGGTCAAA
* *
78171556 GTGATACATGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAACAAA
64 GTGATACGTGATAGCTT-AAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAGAAA
* * * *
78171621 ATATATTGAGTTTCAAGTTGGTGACACAGT-TTTCTGAAAGTATTACCTTGGAAGAAAGTTCTTT
128 AGATATTGAATTTCAAGTTGGCGACACAATATTTCTGAAAGTATTACCTTGGAAGAAAGTTCTTT
* *
78171685 GATTTGGCCGAAAAGGAAAGCTTAGTCCGTGGTTTATCGGGTCATTTAAGATTATTGAGAGAATT
193 GATTTGGCCAAAAAGGAAAGCTTAGTCCGTGGTTTATCAGGTCATTTAAGATTATTGAGAGAATT
* ** *
78171750 GGGTCAGTAGCTTATCAATTAGCTTTGCCGTTAGAGTTAGAAAAGATTCATAATGTATTCCACGT
258 GGGCCAGTAGCTTATCGGTTAGCTTTACCGTTAGAGTTAGAAAAGATTCATAATGTATTCCACGT
* * * * * * *
78171815 ATCAATGTTATAACGGTATCGATTATATCCCTT-ACAGGTAATATCCCAAGTGGATGTTGAAATT
323 ATCAATGTTATGATGGTATCGATCAGAT-CCTTCACACGTAATATCCCTAGTTGATGTTGAAATT
* *
78171879 CAACCTAATATGACGTACAGTGAAGAACTTATCAGAATTCTAGCTCAGGAAGTTAAAGGAA-TAA
387 CAACCTAATATGACATACAGTGAAGAAC-TATCAG-ATTCTAGCTCAGGAAGTTAAA-GAATTGA
* * * *
78171943 GAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACAACATGGAATAGAAGAGGTTTCCTGG
449 GAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAATAGAAGAGGCTACCTGG
* *
78172008 GAACTGGAAGAAGCTATGAAAGTGCAATACTTGAACTTGTTTTCTAGTAAGATTTTCGGGGACGA
514 GAAC-CGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTCGGGGACGA
* * * * * *
78172073 AAATTCCTTCAAGGGGAGAGTTGTAATAGCCCGTTTTCAGTGAAATCGGAACAATGGTTTCAGGA
578 AAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTTAGTGAAATCAGAACAATGGTTTCGGGA
*
78172138 CAACAAA
643 CCACAAA
78172145 CTCGATGAGT
Statistics
Matches: 1147, Mismatches: 184, Indels: 54
0.83 0.13 0.04
Matches are distributed among these distances:
702 154 0.13
703 271 0.24
704 527 0.46
705 192 0.17
706 3 0.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (699 bp):
AGAGCTTAGTGAGAAAAAGTTATTTGGTGTTGATTTGATTTGAGAAACCAAGAAAAGGTCAAAGT
GATACGTGATAGCTTAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAGAAAAGA
TATTGAATTTCAAGTTGGCGACACAATATTTCTGAAAGTATTACCTTGGAAGAAAGTTCTTTGAT
TTGGCCAAAAAGGAAAGCTTAGTCCGTGGTTTATCAGGTCATTTAAGATTATTGAGAGAATTGGG
CCAGTAGCTTATCGGTTAGCTTTACCGTTAGAGTTAGAAAAGATTCATAATGTATTCCACGTATC
AATGTTATGATGGTATCGATCAGATCCTTCACACGTAATATCCCTAGTTGATGTTGAAATTCAAC
CTAATATGACATACAGTGAAGAACTATCAGATTCTAGCTCAGGAAGTTAAAGAATTGAGAAATAA
AAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAATAGAAGAGGCTACCTGGGAACCGA
AGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTCGGGGACGAAAATTCCT
TTAGGGGGAGAGTTGTAACAGCCCGTTTTTAGTGAAATCAGAACAATGGTTTCGGGACCACAAAT
CCGAAAAAGCTTTGTATGGTCAAAAGTGTCGAATTTCATTAACCTGGAC
Found at i:78174651 original size:16 final size:16
Alignment explanation
Indices: 78174632--78174665 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
78174622 ATATTAATTT
*
78174632 TATTTAATCTTAAAAA
1 TATTTAATATTAAAAA
78174648 TATTTAATATTAAAAA
1 TATTTAATATTAAAAA
78174664 TA
1 TA
78174666 CAAAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:78190153 original size:40 final size:40
Alignment explanation
Indices: 78190103--78190284 Score: 179
Period size: 40 Copynumber: 4.5 Consensus size: 40
78190093 GATTCGGATA
78190103 TATATATGGCACTTAGTGTGTGATTCGAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGTGATTCGAGATAGCTTCGGC
* * *
78190143 TATATGTGGCACTTAGTGTGTGAATTGGA-ATATCTTCGGC
1 TATATATGGCACTTAGTGTGTG-ATTCGAGATAGCTTCGGC
* ** *
78190183 TATATATGGCACTTAGTGTGCGAGACCAAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGTGA-TTCGAGATAGCTTCGGC
* * * **
78190224 TATTTAAGGCACTTAGTGTGCGAGATTATA-ATAGCTTCGGC
1 TATATATGGCACTTAGTGT--GTGATTCGAGATAGCTTCGGC
* *
78190265 TATGTATTGGCACCTAGTGT
1 TATATA-TGGCACTTAGTGT
78190285 ACAAGATATT
Statistics
Matches: 116, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 52 0.45
41 48 0.41
42 12 0.10
43 3 0.03
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.34
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGTGATTCGAGATAGCTTCGGC
Found at i:78190235 original size:41 final size:41
Alignment explanation
Indices: 78190132--78190267 Score: 141
Period size: 41 Copynumber: 3.3 Consensus size: 41
78190122 GTGATTCGAG
** * ****
78190132 ATAGCTTCGGCTATATGTGGCACTTAGTGTGTGA-ATTGGA
1 ATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGACCATA
* *
78190172 ATATCTTCGGCTATATATGGCACTTAGTGTGCGAGACCA-A
1 ATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGACCATA
* **
78190212 GATAGCTTCGGCTATTTAAGGCACTTAGTGTGCGAGATTATA
1 -ATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGACCATA
78190254 ATAGCTTCGGCTAT
1 ATAGCTTCGGCTAT
78190268 GTATTGGCAC
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 32 0.39
41 49 0.60
42 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (41 bp):
ATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGACCATA
Found at i:78190235 original size:81 final size:81
Alignment explanation
Indices: 78190103--78190284 Score: 222
Period size: 81 Copynumber: 2.2 Consensus size: 81
78190093 GATTCGGATA
* ** * ** *
78190103 TATATATGGCACTTAGTGTGTGATTCGAGATAGCTTCGGCTATATGTGGCACTTAGTGTGTGA-A
1 TATATATGGCACTTAGTGTGCGAACCAAGATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGA
* *
78190167 TTGGAATATCTTCGGC
66 TTAGAATAGCTTCGGC
*
78190183 TATATATGGCACTTAGTGTGCGAGACCAAGATAGCTTCGGCTATTTAAGGCACTTAGTGTGCGAG
1 TATATATGGCACTTAGTGTGCGA-ACCAAGATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAG
*
78190248 ATTATAATAGCTTCGGC
65 ATTAGAATAGCTTCGGC
* *
78190265 TATGTATTGGCACCTAGTGT
1 TATATA-TGGCACTTAGTGT
78190285 ACAAGATATT
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 22 0.26
81 33 0.38
82 19 0.22
83 12 0.14
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.34
Consensus pattern (81 bp):
TATATATGGCACTTAGTGTGCGAACCAAGATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGA
TTAGAATAGCTTCGGC
Found at i:78193198 original size:23 final size:24
Alignment explanation
Indices: 78193150--78193215 Score: 89
Period size: 23 Copynumber: 2.8 Consensus size: 24
78193140 CCAAAATTTG
*
78193150 GAAGTTCACAAAGAACCATATCAA
1 GAAGCTCACAAAGAACCATATCAA
* *
78193174 GAAGCTTACAAAGATCC-TATCAA
1 GAAGCTCACAAAGAACCATATCAA
*
78193197 GAAGCTCACAAAGAGCCAT
1 GAAGCTCACAAAGAACCAT
78193216 GTAACGGGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 21 0.58
24 15 0.42
ACGTcount: A:0.45, C:0.23, G:0.15, T:0.17
Consensus pattern (24 bp):
GAAGCTCACAAAGAACCATATCAA
Found at i:78196874 original size:33 final size:33
Alignment explanation
Indices: 78196837--78196916 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 33
78196827 TGCAATACAA
*
78196837 CACTCCTCCCGGCTCATATCCACCACATTACTC
1 CACTCCTCCCGGCTCATATCCACCACAGTACTC
* * * *
78196870 CACT-CTCACAGGCTCGTATCCATCACAGTATTC
1 CACTCCTC-CCGGCTCATATCCACCACAGTACTC
*
78196903 CACTCATCCCGGCT
1 CACTCCTCCCGGCT
78196917 TAAGTTCATC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 3 0.08
33 33 0.87
34 2 0.05
ACGTcount: A:0.21, C:0.44, G:0.10, T:0.25
Consensus pattern (33 bp):
CACTCCTCCCGGCTCATATCCACCACAGTACTC
Done.