Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 250 of 325
Found at i:79249670 original size:39 final size:39
Alignment explanation
Indices: 79249615--79249701 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
79249605 GACTTAATGT
*
79249615 CTAGCAGGCCTTGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
79249654 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
79249693 CTAGCAGGC
1 CTAGCAGGC
79249702 TAATTGCCGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
Found at i:79249710 original size:39 final size:39
Alignment explanation
Indices: 79249615--79249714 Score: 157
Period size: 39 Copynumber: 2.6 Consensus size: 39
79249605 GACTTAATGT
*
79249615 CTAGCAGGCCTTGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
*
79249654 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
*
79249693 CTAGCAGG-CTAATTGCCGGTGA
1 CTAGCAGGCCT-AGTGCCGGTGA
79249715 AATAATAAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.04
39 55 0.96
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
Found at i:79259110 original size:7 final size:7
Alignment explanation
Indices: 79259094--79259152 Score: 68
Period size: 7 Copynumber: 8.6 Consensus size: 7
79259084 CTATGCTCTC
79259094 TTTT-TT
1 TTTTCTT
79259100 TTTTCTT
1 TTTTCTT
79259107 TTTTCTT
1 TTTTCTT
* *
79259114 GTTTCAT
1 TTTTCTT
79259121 TTTTCTT
1 TTTTCTT
79259128 TTTT-TT
1 TTTTCTT
79259134 CTTTTCTT
1 -TTTTCTT
*
79259142 TTCTCTT
1 TTTTCTT
79259149 TTTT
1 TTTT
79259153 TTTCACGACC
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
6 6 0.14
7 36 0.82
8 2 0.05
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.83
Consensus pattern (7 bp):
TTTTCTT
Found at i:79263338 original size:12 final size:12
Alignment explanation
Indices: 79263318--79263420 Score: 88
Period size: 12 Copynumber: 8.6 Consensus size: 12
79263308 ATCAAGTGTT
79263318 CATATATATATA
1 CATATATATATA
*
79263330 CATACATATATGA
1 CATATATATAT-A
79263343 -ATATATATATA
1 CATATATATATA
79263354 CATATATATAT-
1 CATATATATATA
* *
79263365 GA-ATGTATATA
1 CATATATATATA
79263376 CATATATGA-ATA
1 CATATAT-ATATA
* *
79263388 TATATATACATA
1 CATATATATATA
*
79263400 TATGAATATATATA
1 CAT--ATATATATA
79263414 CATATAT
1 CATATAT
79263421 GAATATACTT
Statistics
Matches: 74, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
10 7 0.09
11 4 0.05
12 51 0.69
13 2 0.03
14 10 0.14
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.40
Consensus pattern (12 bp):
CATATATATATA
Found at i:79263346 original size:18 final size:18
Alignment explanation
Indices: 79263325--79263428 Score: 91
Period size: 18 Copynumber: 5.3 Consensus size: 18
79263315 GTTCATATAT
79263325 ATATACATACATATATGAATA
1 ATATACATACATATATG---A
*
79263346 TATATATACATATATATATGA
1 -ATAT--ACATACATATATGA
* *
79263367 ATGTATATACATATATGAA
1 ATATACATACATATATG-A
*
79263386 TATATATATACATATATGA
1 -ATATACATACATATATGA
*
79263405 ATATATATACATATATGA
1 ATATACATACATATATGA
79263423 ATATAC
1 ATATAC
79263429 TTTCTCGTCA
Statistics
Matches: 72, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
18 34 0.47
19 2 0.03
20 19 0.26
21 1 0.01
22 4 0.06
24 12 0.17
ACGTcount: A:0.49, C:0.07, G:0.06, T:0.38
Consensus pattern (18 bp):
ATATACATACATATATGA
Found at i:79263348 original size:20 final size:20
Alignment explanation
Indices: 79263323--79263427 Score: 144
Period size: 20 Copynumber: 5.2 Consensus size: 20
79263313 GTGTTCATAT
*
79263323 ATATATACATACATATATGA
1 ATATATATATACATATATGA
79263343 ATATATATATACATATAT-A
1 ATATATATATACATATATGA
*
79263362 TATGAATGTATATACATATATGA
1 -AT--ATATATATACATATATGA
79263385 ATATATATATACATATATG-
1 ATATATATATACATATATGA
79263404 A-ATATATATACATATATGA
1 ATATATATATACATATATGA
79263423 ATATA
1 ATATA
79263428 CTTTCTCGTC
Statistics
Matches: 76, Mismatches: 3, Indels: 12
0.84 0.03 0.13
Matches are distributed among these distances:
18 17 0.22
19 3 0.04
20 38 0.50
22 17 0.22
23 1 0.01
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (20 bp):
ATATATATATACATATATGA
Found at i:79263389 original size:38 final size:38
Alignment explanation
Indices: 79263347--79263427 Score: 135
Period size: 38 Copynumber: 2.1 Consensus size: 38
79263337 ATATGAATAT
* *
79263347 ATATATACATATATATATGAATGTATATACATATATGA
1 ATATATACATACATATATGAATATATATACATATATGA
*
79263385 ATATATATATACATATATGAATATATATACATATATGA
1 ATATATACATACATATATGAATATATATACATATATGA
79263423 ATATA
1 ATATA
79263428 CTTTCTCGTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.49, C:0.05, G:0.06, T:0.40
Consensus pattern (38 bp):
ATATATACATACATATATGAATATATATACATATATGA
Found at i:79278806 original size:22 final size:23
Alignment explanation
Indices: 79278774--79278816 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
79278764 CTGTCGAAAA
79278774 TTATCAAAATTAATCAAAATTTT
1 TTATCAAAATTAATCAAAATTTT
*
79278797 TTAT-AAAATTAATTAAAATT
1 TTATCAAAATTAATCAAAATT
79278817 CAACATGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (23 bp):
TTATCAAAATTAATCAAAATTTT
Found at i:79279409 original size:45 final size:45
Alignment explanation
Indices: 79279339--79279543 Score: 213
Period size: 44 Copynumber: 4.6 Consensus size: 45
79279329 AAACGAAAAT
* **
79279339 GACCAT-GATTGAAAGATA-TCGTGGCATTTTACCTGAAATGAGA-AA
1 GACCATAG-TTGAAAGATACT-ATGGCATTAAACCTGAAATGA-ATAA
*
79279384 GACCATAGTTGAAAGATACTATGGCATTAAA-CTGGAATGAATAA
1 GACCATAGTTGAAAGATACTATGGCATTAAACCTGAAATGAATAA
* * * * * * *
79279428 AACCATGGTTGAAAGATACTACGACACTAAACCAGAAATGTATAA
1 GACCATAGTTGAAAGATACTATGGCATTAAACCTGAAATGAATAA
* * * *
79279473 AACCATAGTTGAAAGA-ACTATGGCATTAAATCTGATACGAATAA
1 GACCATAGTTGAAAGATACTATGGCATTAAACCTGAAATGAATAA
79279517 GACCATAGTTGAAAGATACTATGGCAT
1 GACCATAGTTGAAAGATACTATGGCAT
79279544 CACATCGGTA
Statistics
Matches: 133, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
43 1 0.01
44 71 0.53
45 59 0.44
46 2 0.02
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.24
Consensus pattern (45 bp):
GACCATAGTTGAAAGATACTATGGCATTAAACCTGAAATGAATAA
Found at i:79279439 original size:44 final size:44
Alignment explanation
Indices: 79279385--79279632 Score: 200
Period size: 45 Copynumber: 5.6 Consensus size: 44
79279375 AATGAGAAAG
79279385 ACCATAGTTGAAAGATACTATGGCATTAAACTGGAATGAATAAA
1 ACCATAGTTGAAAGATACTATGGCATTAAACTGGAATGAATAAA
* * * * * * *
79279429 ACCATGGTTGAAAGATACTACGACACTAAACCAGAAATGTATAAA
1 ACCATAGTTGAAAGATACTATGGCATTAAA-CTGGAATGAATAAA
* *
79279474 ACCATAGTTGAAAGA-ACTATGGCATTAAATCT-GATACGAATAAG
1 ACCATAGTTGAAAGATACTATGGCATTAAA-CTGGA-ATGAATAAA
* * * *
79279518 ACCATAGTTGAAAGATACTATGGCATCACA-TCGGTAA-CAATCAAT
1 ACCATAGTTGAAAGATACTATGGCATTAAACT-GG-AATGAAT-AAA
* * *** * *
79279563 ACCATAGTTGGAAGACACTATGGCATTACTTTAGGAATGCATAAG
1 ACCATAGTTGAAAGATACTATGGCATTAAACT-GGAATGAATAAA
* *
79279608 ACCATGGTTGGAAGATAC-ATGGCAT
1 ACCATAGTTGAAAGATACTATGGCAT
79279633 CCTTTGAAAC
Statistics
Matches: 164, Mismatches: 31, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
43 2 0.01
44 69 0.42
45 87 0.53
46 6 0.04
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (44 bp):
ACCATAGTTGAAAGATACTATGGCATTAAACTGGAATGAATAAA
Found at i:79279567 original size:45 final size:44
Alignment explanation
Indices: 79279382--79279588 Score: 154
Period size: 44 Copynumber: 4.6 Consensus size: 44
79279372 TGAAATGAGA
* *
79279382 AAGACCATAGTTGAAAGATACTATGGCATTAAA-CTGGA-ATGAAT
1 AAGACCATAGTTGAAAGA-ACTATGGCATCAAATC-GGATACGAAT
* * * * * * * * *
79279426 AAAACCATGGTTGAAAGATACTACGACA-CTAAACCAGAAATGTAT
1 AAGACCATAGTTGAAAGA-ACTATGGCATC-AAATCGGATACGAAT
* * *
79279471 AAAACCATAGTTGAAAGAACTATGGCATTAAATCTGATACGAAT
1 AAGACCATAGTTGAAAGAACTATGGCATCAAATCGGATACGAAT
*
79279515 AAGACCATAGTTGAAAGATACTATGGCATCACATCGG-TAAC-AAT
1 AAGACCATAGTTGAAAGA-ACTATGGCATCAAATCGGAT-ACGAAT
* *
79279559 CAATACCATAGTTGGAAGACACTATGGCAT
1 -AAGACCATAGTTGAAAGA-ACTATGGCAT
79279589 TACTTTAGGA
Statistics
Matches: 133, Mismatches: 23, Indels: 13
0.79 0.14 0.08
Matches are distributed among these distances:
44 67 0.50
45 66 0.50
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.23
Consensus pattern (44 bp):
AAGACCATAGTTGAAAGAACTATGGCATCAAATCGGATACGAAT
Found at i:79279567 original size:89 final size:89
Alignment explanation
Indices: 79279385--79279590 Score: 222
Period size: 89 Copynumber: 2.3 Consensus size: 89
79279375 AATGAGAAAG
* * *
79279385 ACCATAGTTGAAAGATACTATGGCATTAAACTGGAATGAATAAAACCATGGTTGAAAGATACTAC
1 ACCATAGTTGAAAGACACTATGGCATTAAACTGGAACGAATAAAACCATAGTTGAAAGATACTAC
**
79279450 GACACTAAACCAGAAATGTATAAA
66 GACACTAAACCAGAAATCAATAAA
*
79279474 ACCATAGTTGAAAGA-ACTATGGCATTAAATCT-GATACGAATAAGACCATAGTTGAAAGATACT
1 ACCATAGTTGAAAGACACTATGGCATTAAA-CTGGA-ACGAATAAAACCATAGTTGAAAGATACT
* * * * * * *
79279537 ATGGCA-TCACATCGGTAA-CAATCAAT
64 ACGACACT-AAACCAGAAATCAAT-AAA
*
79279563 ACCATAGTTGGAAGACACTATGGCATTA
1 ACCATAGTTGAAAGACACTATGGCATTA
79279591 CTTTAGGAAT
Statistics
Matches: 99, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
88 19 0.19
89 68 0.69
90 12 0.12
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.24
Consensus pattern (89 bp):
ACCATAGTTGAAAGACACTATGGCATTAAACTGGAACGAATAAAACCATAGTTGAAAGATACTAC
GACACTAAACCAGAAATCAATAAA
Found at i:79282615 original size:14 final size:14
Alignment explanation
Indices: 79282579--79282617 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
79282569 TTGTTTCACT
*
79282579 GAAAATGACTTCCA
1 GAAAATGATTTCCA
**
79282593 GAAAATGATTTCTG
1 GAAAATGATTTCCA
79282607 GAAAATGATTT
1 GAAAATGATTT
79282618 ATTTTTTTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCA
Found at i:79283167 original size:16 final size:16
Alignment explanation
Indices: 79283132--79283172 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 16
79283122 ATGTGAATAA
79283132 TATTATTTAAAATTAC
1 TATTATTTAAAATTAC
79283148 TATT-TTTAAAATT--
1 TATTATTTAAAATTAC
79283161 TATTA-TTAAAAT
1 TATTATTTAAAAT
79283173 AAAATTGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 11 0.46
15 9 0.38
16 4 0.17
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTATTTAAAATTAC
Found at i:79283202 original size:24 final size:24
Alignment explanation
Indices: 79283175--79283220 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
79283165 ATTAAAATAA
79283175 AATTGA-AATATTAAATAATTTATT
1 AATTGATAATATT-AATAATTTATT
* *
79283199 AATTTATTATATTAATAATTTA
1 AATTGATAATATTAATAATTTA
79283221 GTATATGACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
AATTGATAATATTAATAATTTATT
Found at i:79298918 original size:60 final size:60
Alignment explanation
Indices: 79298848--79299029 Score: 355
Period size: 60 Copynumber: 3.0 Consensus size: 60
79298838 AATGAAAAAG
79298848 ATGATAGTTTCTTTTCATCTTTTATTTAATTAACATTTAACTTAATTATCAAATTACTTA
1 ATGATAGTTTCTTTTCATCTTTTATTTAATTAACATTTAACTTAATTATCAAATTACTTA
*
79298908 ATGATAGTTTCTTTTCATCTTTTATTTAATTAAAATTTAACTTAATTATCAAATTACTTA
1 ATGATAGTTTCTTTTCATCTTTTATTTAATTAACATTTAACTTAATTATCAAATTACTTA
79298968 ATGATAGTTTCTTTTCATCTTTTATTTAATTAACATTTAACTTAATTATCAAATTACTTA
1 ATGATAGTTTCTTTTCATCTTTTATTTAATTAACATTTAACTTAATTATCAAATTACTTA
79299028 AT
1 AT
79299030 TAACTTTTAA
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 120 1.00
ACGTcount: A:0.34, C:0.11, G:0.03, T:0.52
Consensus pattern (60 bp):
ATGATAGTTTCTTTTCATCTTTTATTTAATTAACATTTAACTTAATTATCAAATTACTTA
Found at i:79299014 original size:16 final size:16
Alignment explanation
Indices: 79298993--79299039 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
79298983 CATCTTTTAT
79298993 TTAATTAACATTTAAC
1 TTAATTAACATTTAAC
* *
79299009 TTAATTATCAAATT-AC
1 TTAATTAAC-ATTTAAC
*
79299025 TTAATTAACTTTTAA
1 TTAATTAACATTTAA
79299040 AAATGATCAT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
15 2 0.08
16 19 0.79
17 3 0.12
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAATTAACATTTAAC
Found at i:79307599 original size:27 final size:27
Alignment explanation
Indices: 79307564--79307617 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
79307554 GAAAAATATG
79307564 ATAGTTTCTTTTCATCTTTTATTTAAT
1 ATAGTTTCTTTTCATCTTTTATTTAAT
79307591 ATAGTTTCTTTTCATCTTTTATTTAAT
1 ATAGTTTCTTTTCATCTTTTATTTAAT
79307618 TAGCATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.11, G:0.04, T:0.63
Consensus pattern (27 bp):
ATAGTTTCTTTTCATCTTTTATTTAAT
Found at i:79319332 original size:10 final size:12
Alignment explanation
Indices: 79319307--79319338 Score: 50
Period size: 10 Copynumber: 2.8 Consensus size: 12
79319297 TGAGTTAACA
79319307 TTTTGGTGCATG
1 TTTTGGTGCATG
79319319 TTTTGGT-C-TG
1 TTTTGGTGCATG
79319329 TTTTGGTGCA
1 TTTTGGTGCA
79319339 ATTATAAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
10 9 0.50
11 2 0.11
12 7 0.39
ACGTcount: A:0.06, C:0.09, G:0.31, T:0.53
Consensus pattern (12 bp):
TTTTGGTGCATG
Found at i:79320723 original size:36 final size:36
Alignment explanation
Indices: 79320676--79320747 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
79320666 TGTGTCGTAA
79320676 AGAAGACGAGATTGGTAAGTGTGTCAAGGGCTCTTT
1 AGAAGACGAGATTGGTAAGTGTGTCAAGGGCTCTTT
79320712 AGAAGACGAGATTGGTAAGTGTGTCAAGGGCTCTTT
1 AGAAGACGAGATTGGTAAGTGTGTCAAGGGCTCTTT
79320748 GGTAATGAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.11, G:0.33, T:0.28
Consensus pattern (36 bp):
AGAAGACGAGATTGGTAAGTGTGTCAAGGGCTCTTT
Found at i:79326900 original size:36 final size:35
Alignment explanation
Indices: 79326853--79326981 Score: 156
Period size: 36 Copynumber: 3.6 Consensus size: 35
79326843 ATTCTCTATT
*
79326853 TTGGTGTGTTTC-GATTGGACTAGCTCTTCA-GAGCCA
1 TTGGTGTGTTTCGGA-TGGATTAGCTCTT-ATGAG-CA
*
79326889 TTGGTGTGTTTCGGATGGATTAGCTTTTATGAGCA
1 TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
79326924 TTTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
1 -TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
*
79326960 TCTGGTGTGCTTT-GGTTGGATT
1 T-TGGTGTG-TTTCGGATGGATT
79326982 TTCGATGTAC
Statistics
Matches: 84, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
35 4 0.05
36 75 0.89
37 5 0.06
ACGTcount: A:0.15, C:0.12, G:0.31, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
Found at i:79337373 original size:36 final size:36
Alignment explanation
Indices: 79337294--79337375 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 36
79337284 GAGTCATTAG
* * * **
79337294 TGTGTTTCGGATGGATTAGCTCTTATAAGCATTTTG
1 TGTGTTTTGGATGGATTAGATCTTATAAGCATCTAA
* *
79337330 TGCGTTTTGGATGGATTAGATCTTATGAGCATCTAA
1 TGTGTTTTGGATGGATTAGATCTTATAAGCATCTAA
79337366 TGTGTTTTGG
1 TGTGTTTTGG
79337376 TTAGGTGTTA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.20, C:0.10, G:0.27, T:0.44
Consensus pattern (36 bp):
TGTGTTTTGGATGGATTAGATCTTATAAGCATCTAA
Found at i:79346201 original size:22 final size:22
Alignment explanation
Indices: 79346174--79346221 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
79346164 TAATATTTAA
79346174 TATATAATTATATCTATTAT-AACT
1 TATAT-ATTA-ATCT-TTATCAACT
79346198 TATATATTAATCTTTATCAACT
1 TATATATTAATCTTTATCAACT
79346220 TA
1 TA
79346222 GCATAGACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 4 0.17
24 5 0.22
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (22 bp):
TATATATTAATCTTTATCAACT
Found at i:79353259 original size:72 final size:72
Alignment explanation
Indices: 79353138--79353312 Score: 298
Period size: 72 Copynumber: 2.4 Consensus size: 72
79353128 CCTCGTACTT
79353138 TGTAATGCTAGCATTTTGAGTTACTCACGGGACTTTTTGCCATGCCAGTACCAGGACCCCATAAC
1 TGTAATGCTAGCATTTTGAGTTACTCACGGGACTTTTTGCCATGCCAGTACCAGGACCCCATAAC
79353203 TCTATCA
66 TCTATCA
*
79353210 TGTAATGCTAGCATTTTGAGTTACTCACGGGACTTTTTGCCATGTCAGTACCAGGACCCCATAAC
1 TGTAATGCTAGCATTTTGAGTTACTCACGGGACTTTTTGCCATGCCAGTACCAGGACCCCATAAC
79353275 TCTATCA
66 TCTATCA
* * *
79353282 TGTAATGCTCGC-TCATTGAGCTACTCACGGG
1 TGTAATGCTAGCAT-TTTGAGTTACTCACGGG
79353313 TTTGCACTCA
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
71 1 0.01
72 97 0.99
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (72 bp):
TGTAATGCTAGCATTTTGAGTTACTCACGGGACTTTTTGCCATGCCAGTACCAGGACCCCATAAC
TCTATCA
Found at i:79353340 original size:72 final size:71
Alignment explanation
Indices: 79353138--79353333 Score: 207
Period size: 72 Copynumber: 2.7 Consensus size: 71
79353128 CCTCGTACTT
* * *** * *
79353138 TGTAATGCTAGCATTTTGAGTTACTCACGGGACTTTTTGCCATGCCAGTACCAGGACCCCATAAC
1 TGTAATGCTAGCATATTGAGCTACTCACGGGA-TTTGCACCAGGTCAGTACCAGGACCCCATAAC
79353203 TCTATCA
65 TCTATCA
* * *** *
79353210 TGTAATGCTAGCATTTTGAGTTACTCACGGGACTTTTTGCCATGTCAGTACCAGGACCCCATAAC
1 TGTAATGCTAGCATATTGAGCTACTCACGGGA-TTTGCACCAGGTCAGTACCAGGACCCCATAAC
79353275 TCTATCA
65 TCTATCA
*
79353282 TGTAATGCTCGC-TCATTGAGCTACTCACGGG-TTTGCACTCAAGGTCAGTACC
1 TGTAATGCTAGCAT-ATTGAGCTACTCACGGGATTTGCAC-C-AGGTCAGTACC
79353334 CTGACCCATA
Statistics
Matches: 113, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
70 4 0.04
71 2 0.02
72 107 0.95
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (71 bp):
TGTAATGCTAGCATATTGAGCTACTCACGGGATTTGCACCAGGTCAGTACCAGGACCCCATAACT
CTATCA
Found at i:79354836 original size:17 final size:17
Alignment explanation
Indices: 79354814--79354858 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
79354804 TAAGTTGTCT
79354814 TTCTTGCAATGTAAACA
1 TTCTTGCAATGTAAACA
79354831 TTCTTGCAATGTAAACA
1 TTCTTGCAATGTAAACA
*
79354848 TTCTTACAATG
1 TTCTTGCAATG
79354859 CCACTTATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (17 bp):
TTCTTGCAATGTAAACA
Found at i:79359640 original size:23 final size:22
Alignment explanation
Indices: 79359610--79359653 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
79359600 CTTAGCAATT
79359610 TGATTTATAATGAGATATTATA
1 TGATTTATAATGAGATATTATA
*
79359632 TGATATTATTATGAGATATTAT
1 TGAT-TTATAATGAGATATTAT
79359654 CTTTTCGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.48
Consensus pattern (22 bp):
TGATTTATAATGAGATATTATA
Found at i:79359641 original size:13 final size:13
Alignment explanation
Indices: 79359614--79359653 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
79359604 GCAATTTGAT
*
79359614 TTATAATGAGATA
1 TTATTATGAGATA
79359627 TTA-TAT--GATA
1 TTATTATGAGATA
79359637 TTATTATGAGATA
1 TTATTATGAGATA
79359650 TTAT
1 TTAT
79359654 CTTTTCGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
10 7 0.30
11 3 0.13
12 2 0.09
13 11 0.48
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (13 bp):
TTATTATGAGATA
Found at i:79359685 original size:56 final size:57
Alignment explanation
Indices: 79359577--79359693 Score: 143
Period size: 56 Copynumber: 2.1 Consensus size: 57
79359567 GGGGTGTTAG
*
79359577 GATATTATTATGGAATATTATCTCTTAGCAATTTGATTTATAATGAGATATTA-TAT
1 GATATTATTATGGAATATTATCTCTTAGCAATTTGATTCATAATGAGATATTACTAT
* * * *
79359633 GATATTATTAT-GAGATATTATCTTTTCGCAATTTGATTCCTAA-GTAGTTATTACTAT
1 GATATTATTATGGA-ATATTATCTCTTAGCAATTTGATTCATAATG-AGATATTACTAT
79359690 -ATAT
1 GATAT
79359694 ATATACCCTT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
55 3 0.06
56 47 0.89
57 3 0.06
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (57 bp):
GATATTATTATGGAATATTATCTCTTAGCAATTTGATTCATAATGAGATATTACTAT
Found at i:79361576 original size:47 final size:46
Alignment explanation
Indices: 79361469--79361591 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 46
79361459 TATGTGAGCT
* * *
79361469 AGTGTAAGACATGTTTGAGACATGCATCGGCCATATTATGAAAGCC
1 AGTGTAAGACATGTCTGAGACATGCATCGGCCATATAACGAAAGCC
**
79361515 AGTGTAAGACCATGTCTGAGACATGGCATCGG-CAT-TGAAACGAGTGCC
1 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCCATAT--AACGAAAGCC
*
79361563 AGTGTAAGACATGTCTGGGACATGCATCG
1 AGTGTAAGACATGTCTGAGACATGCATCG
79361592 ACACGGATGT
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
46 16 0.24
47 29 0.43
48 22 0.33
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGAGACATGCATCGGCCATATAACGAAAGCC
Found at i:79361612 original size:48 final size:47
Alignment explanation
Indices: 79361458--79361629 Score: 159
Period size: 48 Copynumber: 3.6 Consensus size: 47
79361448 GACACTGTTG
* * * *
79361458 TTATGTGAGCTAGTGTAAGACATGTTTGAGACATGCATCGGC-CATA
1 TTATGAGAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCACAGA
* **
79361504 TTATGAAAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGGCATTGA
1 TTATGAGAGCCAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCACAGA
* * * * * *
79361553 -AACGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGACACGGA
1 TTATGAGAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCACAGA
* *
79361599 TGTGTGAGAGCCAGTGTAAGACCATATCTGA
1 T-TATGAGAGCCAGTGTAAGA-CATGTCTGA
79361630 AATATGGAAT
Statistics
Matches: 99, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
46 27 0.27
47 26 0.26
48 38 0.38
49 8 0.08
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
TTATGAGAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCACAGA
Found at i:79364122 original size:20 final size:20
Alignment explanation
Indices: 79364097--79364136 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
79364087 CGATTGAACC
79364097 ATCAATTTTCAAAATCGATT
1 ATCAATTTTCAAAATCGATT
79364117 ATCAATTTTCAAAATCGATT
1 ATCAATTTTCAAAATCGATT
79364137 CAATTGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40
Consensus pattern (20 bp):
ATCAATTTTCAAAATCGATT
Found at i:79364239 original size:17 final size:16
Alignment explanation
Indices: 79364208--79364249 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
79364198 ATAAGCGAAT
79364208 AATGTTTTATTAAAAA
1 AATGTTTTATTAAAAA
*
79364224 AATGTATTT-TTTAAAA
1 AATGT-TTTATTAAAAA
*
79364240 TATGTTTTAT
1 AATGTTTTAT
79364250 ATAATATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 3 0.14
16 16 0.73
17 3 0.14
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.52
Consensus pattern (16 bp):
AATGTTTTATTAAAAA
Found at i:79364759 original size:39 final size:38
Alignment explanation
Indices: 79364684--79364777 Score: 98
Period size: 39 Copynumber: 2.4 Consensus size: 38
79364674 AATTTACAAA
** *
79364684 ATATTTGGTTATAAAGTTGAGTTTCCAGTAAAAATTTT
1 ATATTTGGTTATAAAAATGAGTTTCCAATAAAAATTTT
* * **
79364722 GATATTTGATTATAAAAATGGGTTTCCAATAGTAATTTT
1 -ATATTTGGTTATAAAAATGAGTTTCCAATAAAAATTTT
*
79364761 AGTATTTGGTTACAAAA
1 A-TATTTGGTTATAAAA
79364778 TGTTTTTAAC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 1 0.02
39 44 0.98
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (38 bp):
ATATTTGGTTATAAAAATGAGTTTCCAATAAAAATTTT
Found at i:79365647 original size:19 final size:20
Alignment explanation
Indices: 79365630--79365695 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 20
79365620 AAAAAAATTT
79365630 AAATAATTTTTTAAAATTCA
1 AAATAATTTTTTAAAATTCA
*
79365650 AAATAA-TTTTTGAAATTCA
1 AAATAATTTTTTAAAATTCA
* * *
79365669 AGAT-ATTTATAAAAATTCCA
1 AAATAATTTTTTAAAATT-CA
79365689 AAA-AATT
1 AAATAATT
79365696 ATATATATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
18 1 0.03
19 23 0.62
20 13 0.35
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (20 bp):
AAATAATTTTTTAAAATTCA
Found at i:79365751 original size:20 final size:17
Alignment explanation
Indices: 79365709--79365761 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 17
79365699 TATATATTTT
79365709 TTAAAAATTATAAAAAA
1 TTAAAAATTATAAAAAA
79365726 TCTAAAAGATATATAAAAAA
1 T-TAAAA-AT-TATAAAAAA
79365746 GTTAAAAATT-TAAAAA
1 -TTAAAAATTATAAAAA
79365762 TGTTCTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
17 7 0.22
18 6 0.19
19 4 0.12
20 14 0.44
21 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (17 bp):
TTAAAAATTATAAAAAA
Found at i:79367240 original size:15 final size:16
Alignment explanation
Indices: 79367222--79367255 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
79367212 AAAATTTTTA
79367222 TATCTAAA-AAATATT
1 TATCTAAATAAATATT
*
79367237 TATCTAAATATATATT
1 TATCTAAATAAATATT
79367253 TAT
1 TAT
79367256 ATTTTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (16 bp):
TATCTAAATAAATATT
Found at i:79373202 original size:14 final size:15
Alignment explanation
Indices: 79373178--79373209 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
79373168 TGTTAAATAA
79373178 ATTTTCTTAAAAATT
1 ATTTTCTTAAAAATT
79373193 ATTTTC-TAAAAATT
1 ATTTTCTTAAAAATT
79373207 ATT
1 ATT
79373210 CTTAGTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTTCTTAAAAATT
Found at i:79377552 original size:14 final size:14
Alignment explanation
Indices: 79377533--79377567 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
79377523 TGCATATTCA
*
79377533 GATATGGGTATGTG
1 GATATGAGTATGTG
*
79377547 GATATGATTATGTG
1 GATATGAGTATGTG
79377561 GATATGA
1 GATATGA
79377568 TTTGGATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.34, T:0.37
Consensus pattern (14 bp):
GATATGAGTATGTG
Found at i:79377568 original size:14 final size:14
Alignment explanation
Indices: 79377541--79377569 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
79377531 CAGATATGGG
79377541 TATGTGGATATGAT
1 TATGTGGATATGAT
79377555 TATGTGGATATGAT
1 TATGTGGATATGAT
79377569 T
1 T
79377570 TGGATTCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.45
Consensus pattern (14 bp):
TATGTGGATATGAT
Found at i:79380979 original size:26 final size:25
Alignment explanation
Indices: 79380948--79380998 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
79380938 TAATACTTTA
*
79380948 ATTTAATCTAATATATTTTATTTAAT
1 ATTTAATCTAA-ATATTTTATATAAT
* *
79380974 ATTTAATTTAAATTTTTTATATAAT
1 ATTTAATCTAAATATTTTATATAAT
79380999 TGAAATTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTAATCTAAATATTTTATATAAT
Found at i:79384647 original size:6 final size:6
Alignment explanation
Indices: 79384638--79384690 Score: 63
Period size: 6 Copynumber: 8.8 Consensus size: 6
79384628 GACATAGCTA
* * *
79384638 TAGATG TAGATG TAGACG TAGATG TAGATG TAGACG TAGAAT- TAGAAG
1 TAGATG TAGATG TAGATG TAGATG TAGATG TAGATG TAG-ATG TAGATG
79384686 TAGAT
1 TAGAT
79384691 CCAAGCACTA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
5 1 0.03
6 37 0.95
7 1 0.03
ACGTcount: A:0.38, C:0.04, G:0.30, T:0.28
Consensus pattern (6 bp):
TAGATG
Found at i:79384689 original size:18 final size:18
Alignment explanation
Indices: 79384638--79384677 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
79384628 GACATAGCTA
79384638 TAGATGTAGATGTAGACG
1 TAGATGTAGATGTAGACG
79384656 TAGATGTAGATGTAGACG
1 TAGATGTAGATGTAGACG
79384674 TAGA
1 TAGA
79384678 ATTAGAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.33, T:0.28
Consensus pattern (18 bp):
TAGATGTAGATGTAGACG
Found at i:79399137 original size:28 final size:28
Alignment explanation
Indices: 79399095--79399151 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
79399085 ATCTTCGATG
* *
79399095 TCTCGTACACTAAGTGCCATACTCAATA
1 TCTCGCACACCAAGTGCCATACTCAATA
* * *
79399123 TCTCGCACACCAAGTTCCATTCTTAATA
1 TCTCGCACACCAAGTGCCATACTCAATA
79399151 T
1 T
79399152 TTTGAACACT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (28 bp):
TCTCGCACACCAAGTGCCATACTCAATA
Found at i:79408660 original size:94 final size:94
Alignment explanation
Indices: 79408465--79408684 Score: 239
Period size: 94 Copynumber: 2.3 Consensus size: 94
79408455 TATGTGTATG
* *
79408465 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAACATGAGAGCCAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAACACGAAAGCCAGTGTAAGACATGTCTGGG
**
79408530 ACATGCATCGCCCTCGAAATATTTAAGCC
66 ACATGCATCGCCCTCGAAATATACAAGCC
* * ** * *
79408559 AGAGTAAGACATGTCTGGGACATGCATC-GGCATTGAGACGAAAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA-CAACACGAAAGCCAGTGTAAGACATGTCTGG
* * *
79408623 GACATGCATCAG-GCTC-ACGATATACAAGCT
65 GACATGCATC-GCCCTCGA-AATATACAAGCC
* * *
79408653 AGTGTAAGACCTGTTTGGGGCATGGCATCAGC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGC
79408685 TTGTGGTGTG
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
93 4 0.04
94 92 0.89
95 6 0.06
96 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAACACGAAAGCCAGTGTAAGACATGTCTGGG
ACATGCATCGCCCTCGAAATATACAAGCC
Found at i:79408753 original size:49 final size:49
Alignment explanation
Indices: 79408465--79408821 Score: 230
Period size: 46 Copynumber: 7.5 Consensus size: 49
79408455 TATGTGTATG
* * * *
79408465 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCAC-A-ACATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATAGATGAAAGCC
* * * **
79408511 AGTGTAAGACATGTCTGGGACAT-GCATC-GCCCTCGAAATATTTAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAG-CCTCGATAGATGAAAGCC
* * * * * * *
79408559 AGAGTAAGACATGTCTGGGACAT-GCATCGGCATTG--AGACGAAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATAGATGAAAGCC
* * *
79408605 AGTGTAAGACATGTCTGGGACAT-GCATCAGGCTCACGAT--AT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCA-GC-CTCGATAGATGA-AAGCC
* * * * * *
79408653 AGTGTAAGACCTGTTTGGGGCATGGCATCAG-CTTG-T-GGTG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATAGATGAAAGCC
* * *
79408697 AGTGTAAGACCTGTCTGGGATATGGCAT-TGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAG-C-CTCGATAGATGAAAGCC
* * * *
79408746 AGTGTAAGACCAGTCTGGGACATGGCATCAGCCTCGCTATATGAAAGGC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATAGATGAAAGCC
79408795 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
79408822 GTCGGCATCT
Statistics
Matches: 245, Mismatches: 44, Indels: 40
0.74 0.13 0.12
Matches are distributed among these distances:
43 1 0.00
44 26 0.11
45 3 0.01
46 69 0.28
47 7 0.03
48 66 0.27
49 58 0.24
50 15 0.06
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATAGATGAAAGCC
Found at i:79417824 original size:100 final size:100
Alignment explanation
Indices: 79417651--79417838 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
79417641 TATTGTGAGG
* * *
79417651 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTCCCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTAAT
79417716 AAGTGCAGGCTACTATGCGTACCCGAAAACTCTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTCTGA
* *
79417751 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTAAT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTAAT
79417816 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
79417839 AGATAGCTTC
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTAAT
AAGTGCAGGCTACTATGCGTACCCGAAAACTCTGA
Found at i:79417838 original size:49 final size:49
Alignment explanation
Indices: 79417656--79417843 Score: 232
Period size: 49 Copynumber: 3.8 Consensus size: 49
79417646 TGAGGTCACG
* * * *
79417656 TGTGTAGTACTAAGTGCAAGCTACTACGTGTCCCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * * *
79417705 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTCTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-TGGTCGCA
* *
79417756 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* *
79417805 TGTGTAGTAATAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
79417844 GCTTCGGCTA
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 74 0.64
50 2 0.02
51 40 0.34
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:79419409 original size:48 final size:46
Alignment explanation
Indices: 79419286--79419413 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 46
79419276 TGATATGTGT
*
79419286 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAACATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAGA
* * * *
79419332 GTTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCGAGATATTTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ACA-TGAGA
* *
79419380 GCTAGAGTAAGACATGTCTAGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
79419414 ATTGAGACGA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
46 34 0.48
47 1 0.01
48 34 0.48
49 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAGA
Found at i:79419440 original size:94 final size:94
Alignment explanation
Indices: 79419286--79419486 Score: 226
Period size: 94 Copynumber: 2.1 Consensus size: 94
79419276 TGATATGTGT
* * * *
79419286 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAACATGAGAGTTAGTGTAAGACATG-TC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACAACACGAGAGCTAGTGCAAGACATGTTC
* **
79419350 TGGGACATGCATCGGCCCCGAGATATTTAA
66 -GGGACATACATCGGCCCCGAGATATACAA
* * ** * *
79419380 GCTAGAGTAAGACATGTCTAGGACATGCATC-GGCATTGAGACGAGAGCTAGTGCAGGACATGTT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCA-CAACACGAGAGCTAGTGCAAGACATGTT
** *
79419444 CGGGACATACATCGGCTTCGTGATATACAA
65 CGGGACATACATCGGCCCCGAGATATACAA
79419474 GCTAGTGTAAGAC
1 GCTAGTGTAAGAC
79419487 CCGTTTGGGA
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
93 3 0.03
94 83 0.94
95 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACAACACGAGAGCTAGTGCAAGACATGTTC
GGGACATACATCGGCCCCGAGATATACAA
Found at i:79419578 original size:49 final size:49
Alignment explanation
Indices: 79419521--79419629 Score: 139
Period size: 49 Copynumber: 2.2 Consensus size: 49
79419511 GTGGTGTGTT
* *
79419521 AGTGTAAGACCCGTCTGGGACATGACATTGACACT-GATAGATGAGAGCC
1 AGTGTAAGACCCGTCTGGGACATGACATCGAC-CTCGATAGATGAAAGCC
* * * * *
79419570 AGTGTAAGACCTGTCTGGGACATGTCATCGGCCTCGCTATATGAAAGCC
1 AGTGTAAGACCCGTCTGGGACATGACATCGACCTCGATAGATGAAAGCC
79419619 AGTGTAAGACC
1 AGTGTAAGACC
79419630 ATGCCTGGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 2 0.04
49 50 0.96
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (49 bp):
AGTGTAAGACCCGTCTGGGACATGACATCGACCTCGATAGATGAAAGCC
Found at i:79422430 original size:31 final size:31
Alignment explanation
Indices: 79422373--79422432 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 31
79422363 GGCTTATGTG
*
79422373 ATATATGTGGTAGTTTAAACATTTGAGATTT
1 ATATATGTGGTAGTTTAAAAATTTGAGATTT
79422404 ATATATGT-GTA-TGTTAAAAATATTGAGAT
1 ATATATGTGGTAGT-TTAAAAAT-TTGAGAT
79422433 CTATTACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 1 0.04
30 10 0.38
31 15 0.58
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.43
Consensus pattern (31 bp):
ATATATGTGGTAGTTTAAAAATTTGAGATTT
Found at i:79422471 original size:20 final size:18
Alignment explanation
Indices: 79422443--79422486 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
79422433 CTATTACCTA
79422443 ATGTGAAAAGCATGTTTAAC
1 ATGTGAAAAG--TGTTTAAC
* *
79422463 ATGTTAAAAGTGTTTATC
1 ATGTGAAAAGTGTTTAAC
79422481 ATGTGA
1 ATGTGA
79422487 TATGTGATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 12 0.57
20 9 0.43
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.36
Consensus pattern (18 bp):
ATGTGAAAAGTGTTTAAC
Found at i:79422660 original size:49 final size:51
Alignment explanation
Indices: 79422601--79422742 Score: 180
Period size: 49 Copynumber: 2.8 Consensus size: 51
79422591 AGGTGGAAGT
*
79422601 AGTGGCAGTATATCTGCAAATTTGTGGTGGCTTGTCCACAAAA-T-TTATC
1 AGTGGCAGTATATCTGCAAATTAGTGGTGGCTTGTCCACAAAAGTGTTATC
* *
79422650 AGTGGTAGTATATCTGCATATTAGTGGTGGCTTGTCCACAAAAGTGTTATC
1 AGTGGCAGTATATCTGCAAATTAGTGGTGGCTTGTCCACAAAAGTGTTATC
* * * * * * *
79422701 AGTGGCAATTTATCTACAAATCAGTCGTAGCTTGTCTACAAA
1 AGTGGCAGTATATCTGCAAATTAGTGGTGGCTTGTCCACAAA
79422743 TGGTGTTTCG
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 40 0.51
50 1 0.01
51 38 0.48
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (51 bp):
AGTGGCAGTATATCTGCAAATTAGTGGTGGCTTGTCCACAAAAGTGTTATC
Found at i:79427795 original size:23 final size:23
Alignment explanation
Indices: 79427765--79427810 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
79427755 GAAAAGAGAG
79427765 AATTTTGAACTCGGTTTACACTA
1 AATTTTGAACTCGGTTTACACTA
79427788 AATTTTGAACTCGGTTTACACTA
1 AATTTTGAACTCGGTTTACACTA
79427811 TAAACATAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.39
Consensus pattern (23 bp):
AATTTTGAACTCGGTTTACACTA
Found at i:79440022 original size:23 final size:22
Alignment explanation
Indices: 79439991--79440034 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
79439981 TTGATCGTAT
*
79439991 GTTTAGGTATGATTTTAGTTTAA
1 GTTTAGGTATGAATTTA-TTTAA
*
79440014 GTTTTGGTATGAATTTATTTA
1 GTTTAGGTATGAATTTATTTA
79440035 TGAATTGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (22 bp):
GTTTAGGTATGAATTTATTTAA
Found at i:79440257 original size:13 final size:13
Alignment explanation
Indices: 79440239--79440263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79440229 CATGTGCAAC
79440239 ACACGGTCATGTT
1 ACACGGTCATGTT
79440252 ACACGGTCATGT
1 ACACGGTCATGT
79440264 GTCCCCCAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (13 bp):
ACACGGTCATGTT
Found at i:79444326 original size:13 final size:15
Alignment explanation
Indices: 79444297--79444333 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
79444287 TTTTAATTTC
79444297 AATATTATTTGTATT
1 AATATTATTTGTATT
79444312 AATA-TATTT-TATT
1 AATATTATTTGTATT
*
79444325 AATGTTATT
1 AATATTATT
79444334 ATTATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 7 0.35
14 9 0.45
15 4 0.20
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (15 bp):
AATATTATTTGTATT
Found at i:79456283 original size:14 final size:14
Alignment explanation
Indices: 79456264--79456298 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
79456254 CGCTGAAGTA
* *
79456264 TTTTCAATTTCTGT
1 TTTTCAATTTATAT
79456278 TTTTCAATTTATAT
1 TTTTCAATTTATAT
79456292 TTTTCAA
1 TTTTCAA
79456299 AAATCAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.23, C:0.11, G:0.03, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:79456354 original size:87 final size:87
Alignment explanation
Indices: 79456205--79456683 Score: 444
Period size: 87 Copynumber: 5.5 Consensus size: 87
79456195 ATGTTTTTAT
** * ** * *
79456205 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAGGATACGCTGAAGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTTTCA
* *
79456270 ATTTCTGTTTTTCAATTTATAT
66 ATTTCTGTTTTTCAATTTCTAC
*
79456292 TTTTCAAAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTTTC-
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTTTCA
* * * *
79456356 ATTTTTGCTTTTCAATCTCTGC
66 ATTTCTGTTTTTCAATTTCTAC
* * *
79456378 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACATGCTGAGGCA-
1 TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCAC--GCTGAGGAAT
* *
79456441 -TT---TTT-AGTTTTT--ATTTATAC
61 TTTCAATTTCTGTTTTTCAATTTCTAC
* * * * *
79456461 TTTTCAAAAGTCAACTCATATTTCGAAAGATGAGTTGAGCCTC-GGGCCACATGCTGAGGTATTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CAC--GCTGAGGAATTT
* **
79456525 TCAAAATTTC-ATTTTTCAATTTCTGT
63 TC--AATTTCTGTTTTTCAATTTCTAC
* * *
79456551 TTCTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTGATAAGCTAAGGTAA-
1 TT-TT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-G-CACGCTGAGG-AAT
*
79456615 TTTCAATTTCTGTTTTTCAATTTCTGC
61 TTTCAATTTCTGTTTTTCAATTTCTAC
*
79456642 TTTTCAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
79456684 TGGCTCACGT
Statistics
Matches: 324, Mismatches: 45, Indels: 44
0.78 0.11 0.11
Matches are distributed among these distances:
81 48 0.15
83 12 0.04
85 5 0.02
86 24 0.07
87 58 0.18
88 49 0.15
89 37 0.11
90 23 0.07
91 18 0.06
92 45 0.14
93 3 0.01
94 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (87 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTTTCA
ATTTCTGTTTTTCAATTTCTAC
Found at i:79456590 original size:173 final size:169
Alignment explanation
Indices: 79456284--79456594 Score: 439
Period size: 173 Copynumber: 1.8 Consensus size: 169
79456274 CTGTTTTTCA
* * *
79456284 ATTTATATTTTTCAAAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
1 ATTTATACTTTTCAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCTCAGGGCACGCTGAGG
**
79456349 AATTTTCATTTTTGCTTTTCAATCTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
66 AATTTTCAAATTTGCTTTTCAATCTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
79456414 TTGAGCCTTGGCTCACATGCTGAGGCATTTTTAGTTTTT
131 TTGAGCCTTGGCTCACATGCTGAGGCATTTTTAGTTTTT
* *
79456453 ATTTATACTTTTCAAAAGTCAACTCATATTTCGAAAGATGAGTTGAGCCTC-GGGCCACATGCTG
1 ATTTATACTTTTCAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCTCAGGG-CAC--GCTG
* * * *
79456517 AGGTATTTTCAAAATTT-CATTTTTCAATTTCTGTTTCTTC-CAAAAATCAACTCATATTGCGAG
63 AGGAATTTTC-AAATTTGC--TTTTCAATCTCTGCTT-TTCAAAAAAATCAACTCATATTGCGAG
79456580 AGGTGAGTTGAGCCT
124 AGGTGAGTTGAGCCT
79456595 CAGGTGATAA
Statistics
Matches: 124, Mismatches: 11, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
168 3 0.02
169 49 0.40
171 14 0.11
172 4 0.03
173 51 0.41
174 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (169 bp):
ATTTATACTTTTCAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCTCAGGGCACGCTGAGG
AATTTTCAAATTTGCTTTTCAATCTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
TTGAGCCTTGGCTCACATGCTGAGGCATTTTTAGTTTTT
Found at i:79456634 original size:14 final size:14
Alignment explanation
Indices: 79456615--79456648 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
79456605 GCTAAGGTAA
*
79456615 TTTCAATTTCTGTT
1 TTTCAATTTCTGCT
79456629 TTTCAATTTCTGCT
1 TTTCAATTTCTGCT
79456643 TTTCAA
1 TTTCAA
79456649 AAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTGCT
Found at i:79456767 original size:74 final size:72
Alignment explanation
Indices: 79456629--79456791 Score: 211
Period size: 74 Copynumber: 2.2 Consensus size: 72
79456619 AATTTCTGTT
* * ** *
79456629 TTTCAATTTCTGCTTTTCAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGT
1 TTTCAATTTCT-ATTTTCAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTAAGCACACGT
79456694 GCTGAGCTAC
65 --TGAGCTAC
*
79456704 TTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAG-ACACGT
1 TTTCAATTTCTATTTTCAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCT-AAGCACACGT
* *
79456768 TGAGGTAT
65 TGAGCTAC
79456776 TTTCAATTTCTATTTT
1 TTTCAATTTCTATTTT
79456792 TCAATTTATA
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
72 22 0.28
74 45 0.57
75 12 0.15
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (72 bp):
TTTCAATTTCTATTTTCAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTAAGCACACGTT
GAGCTAC
Found at i:79456794 original size:14 final size:14
Alignment explanation
Indices: 79456775--79456809 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
79456765 CGTTGAGGTA
*
79456775 TTTTCAATTTCTAT
1 TTTTCAATTTATAT
79456789 TTTTCAATTTATAT
1 TTTTCAATTTATAT
*
79456803 CTTTCAA
1 TTTTCAA
79456810 AAATCAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.14, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:79456828 original size:161 final size:165
Alignment explanation
Indices: 79456538--79456844 Score: 453
Period size: 161 Copynumber: 1.9 Consensus size: 165
79456528 AAATTTCATT
* * * *
79456538 TTTCAATTTCTGTTTCTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTGAT
1 TTTCAATTTCTGATTCTTCCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-GAGAC
* *
79456603 AAGCTAAGGTAATTTCAATTTCTGTTTTTCAATTTCTGCTTTTCAAAAATCAACTCACATTGCGA
65 AAGCTAAGGTAATTTCAATTTCTATTTTTCAATTTATGCTTTTCAAAAATCAACTCACATTGCGA
79456668 GAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTAC
130 GAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTAC
79456704 TTTCAATTTCT-ATT-TT-CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-AGACA
1 TTTCAATTTCTGATTCTTCCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAGACA
* * * * * *
79456765 CGTTGAGGTATTTTCAATTTCTATTTTTCAATTTAT-ATCTTTCAAAAATCAACTCATATTGCGA
66 AGCTAAGGTAATTTCAATTTCTATTTTTCAATTTATGCT-TTTCAAAAATCAACTCACATTGCGA
79456829 GAGGTGAGTTGAGCCT
130 GAGGTGAGTTGAGCCT
79456845 CAGGGCACGC
Statistics
Matches: 128, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
160 1 0.01
161 73 0.57
163 39 0.30
164 2 0.02
165 2 0.02
166 11 0.09
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (165 bp):
TTTCAATTTCTGATTCTTCCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAGACA
AGCTAAGGTAATTTCAATTTCTATTTTTCAATTTATGCTTTTCAAAAATCAACTCACATTGCGAG
AGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTAC
Found at i:79456863 original size:87 final size:86
Alignment explanation
Indices: 79456700--79456929 Score: 286
Period size: 87 Copynumber: 2.7 Consensus size: 86
79456690 ACGTGCTGAG
* *
79456700 CTAC-TTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGAC
1 CTACTTTTCAATTTATATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
* **
79456764 ACGTTGAGGTATTTTCAATTT
66 ACGCTGAGGTATTTTCAAAAT
* * *
79456785 CTATTTTTCAATTTATATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG
1 CTACTTTTCAATTTATAT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
79456850 CACGCTGCA-GTATTTTCAAAAT
65 CACGCTG-AGGTATTTTCAAAAT
* * * * * * *
79456872 CTGCTTTCCAAATTA-AGTTTCAAAAACCAACTCACATTGCGAGAGGTGAGATGAGCCT
1 CTACTTTTCAATTTATATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
79456930 TGGCTCACGT
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
85 41 0.33
86 13 0.10
87 71 0.56
88 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (86 bp):
CTACTTTTCAATTTATATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
ACGCTGAGGTATTTTCAAAAT
Found at i:79458706 original size:22 final size:22
Alignment explanation
Indices: 79458669--79458724 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
79458659 ATTTTCATCC
* **
79458669 TTTTTTTTTAATTTTCCTTATTA
1 TTTTGTTTTAA-TTTCAATATTA
79458692 TTTTGTTTTAATTTCAATATTA
1 TTTTGTTTTAATTTCAATATTA
*
79458714 -TTTGTATTAAT
1 TTTTGTTTTAAT
79458725 ATATTTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 10 0.34
22 9 0.31
23 10 0.34
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.68
Consensus pattern (22 bp):
TTTTGTTTTAATTTCAATATTA
Found at i:79458991 original size:22 final size:21
Alignment explanation
Indices: 79458961--79459008 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
79458951 ATTATGTTTC
*
79458961 TATTAATATATTATACATATA
1 TATTAATATATAATACATATA
* *
79458982 GTATTTATATATAATACGTATA
1 -TATTAATATATAATACATATA
79459004 TATTA
1 TATTA
79459009 TGTATGTGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (21 bp):
TATTAATATATAATACATATA
Found at i:79459777 original size:32 final size:35
Alignment explanation
Indices: 79459741--79459805 Score: 93
Period size: 32 Copynumber: 1.9 Consensus size: 35
79459731 AATATTCCTA
79459741 ATATATATTGTA-TATGT-T-TATTTA-TATTATGT
1 ATATATATT-TAGTATGTATATATTTAGTATTATGT
79459773 ATATATATTTAGTATGTATATATTTAGTATTAT
1 ATATATATTTAGTATGTATATATTTAGTATTAT
79459806 TATGTCTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 2 0.07
32 14 0.48
33 1 0.03
34 6 0.21
35 6 0.21
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (35 bp):
ATATATATTTAGTATGTATATATTTAGTATTATGT
Found at i:79459794 original size:15 final size:15
Alignment explanation
Indices: 79459774--79459802 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
79459764 ATATTATGTA
79459774 TATATATTTAGTATG
1 TATATATTTAGTATG
79459789 TATATATTTAGTAT
1 TATATATTTAGTAT
79459803 TATTATGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (15 bp):
TATATATTTAGTATG
Found at i:79459810 original size:21 final size:19
Alignment explanation
Indices: 79459749--79459818 Score: 63
Period size: 21 Copynumber: 3.6 Consensus size: 19
79459739 TAATATATAT
*
79459749 TGTATATGTTTATTTATATTA
1 TGTATATATTTA-TT-TATTA
*
79459770 TGTATATA--TATTTAGTA
1 TGTATATATTTATTTATTA
79459787 TGTATATATTTAGTATTATTA
1 TGTATATATTTA-T-TTATTA
*
79459808 TGTCTATATTT
1 TGTATATATTT
79459819 TTCATTCCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
17 12 0.29
18 2 0.05
19 4 0.10
20 1 0.02
21 22 0.54
ACGTcount: A:0.30, C:0.01, G:0.10, T:0.59
Consensus pattern (19 bp):
TGTATATATTTATTTATTA
Found at i:79464928 original size:50 final size:45
Alignment explanation
Indices: 79464683--79464950 Score: 192
Period size: 46 Copynumber: 5.8 Consensus size: 45
79464673 TTTGTGTGCT
* * *
79464683 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCACATGAT--GAGTC
* * *
79464729 AGTGTAAGACCATGTCTGGGACATGGCATCGGTA-TTGAGACGAGTGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT--GATGAGT-C
* * * * * * *
79464776 TAGTGTACGA-CATGTTTGGGACAT-GCATTAGCCTCGA-GATAAAAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCA-TCGGCAC-ATGAT--GAGTC
*
79464823 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACATGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACATGATGAGTC
*
79464867 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAATAAGTTAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--AT--GAT-GAGTC
79464917 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
79464951 TTATACCTTG
Statistics
Matches: 176, Mismatches: 26, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
44 11 0.06
45 20 0.11
46 54 0.31
47 35 0.20
48 16 0.09
49 2 0.01
50 38 0.22
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATGATGAGTC
Found at i:79470152 original size:18 final size:19
Alignment explanation
Indices: 79470129--79470172 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
79470119 AACTCAACTT
* *
79470129 ATTTATACATATTTAA-TA
1 ATTTATACATATCTAACGA
79470147 ATTTATACATATCTAACGA
1 ATTTATACATATCTAACGA
79470166 ATTTATA
1 ATTTATA
79470173 TTGCCATGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.45
Consensus pattern (19 bp):
ATTTATACATATCTAACGA
Found at i:79484617 original size:19 final size:19
Alignment explanation
Indices: 79484593--79484630 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
79484583 ATTTTGCAAC
79484593 TTATTCAATTTAGTCTTTA
1 TTATTCAATTTAGTCTTTA
79484612 TTATTCAATTTAGTCTTTA
1 TTATTCAATTTAGTCTTTA
79484631 AACCAGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATTCAATTTAGTCTTTA
Found at i:79491449 original size:16 final size:17
Alignment explanation
Indices: 79491425--79491457 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
79491415 ATTTTACTTG
*
79491425 TATACTTAAA-TTAATT
1 TATAATTAAACTTAATT
79491441 TATAATTAAACTTAATT
1 TATAATTAAACTTAATT
79491458 CATTTACTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (17 bp):
TATAATTAAACTTAATT
Found at i:79491716 original size:21 final size:23
Alignment explanation
Indices: 79491690--79491731 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
79491680 ATTACTTAAC
79491690 TAAATTT-T-AATATCAATATAA
1 TAAATTTGTAAATATCAATATAA
*
79491711 TAAATTTGTAAATATCCATAT
1 TAAATTTGTAAATATCAATAT
79491732 TTAATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 1 0.06
23 10 0.56
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (23 bp):
TAAATTTGTAAATATCAATATAA
Found at i:79492472 original size:17 final size:17
Alignment explanation
Indices: 79492450--79492483 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
79492440 CATGAGAAAG
79492450 TGTAATGAAATGGTTAT
1 TGTAATGAAATGGTTAT
79492467 TGTAATGAAATGGTTAT
1 TGTAATGAAATGGTTAT
79492484 AACTAAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (17 bp):
TGTAATGAAATGGTTAT
Found at i:79494182 original size:21 final size:21
Alignment explanation
Indices: 79494156--79494195 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
79494146 TAATTTTATA
79494156 AAATTAAA-TAATATTCTAAAG
1 AAATTAAATTAA-ATTCTAAAG
79494177 AAATTAAATTAAATTCTAA
1 AAATTAAATTAAATTCTAA
79494196 GTCATCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
AAATTAAATTAAATTCTAAAG
Found at i:79496616 original size:49 final size:50
Alignment explanation
Indices: 79496538--79496770 Score: 283
Period size: 49 Copynumber: 4.7 Consensus size: 50
79496528 ATCGATTGTG
* *
79496538 AGGTCATGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * **
79496588 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCAATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * *
79496638 CGATCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTATCAGATGATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
79496688 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATCATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
79496738 -GGTCGTC-TATGTAGTACTAAGTGCAGGCTACTA
1 AGGTC-ACGTGTGTAGTACTAAGTGCAGGCTACTA
79496771 TGCATACCAG
Statistics
Matches: 156, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
49 69 0.44
50 49 0.31
51 38 0.24
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:79496727 original size:101 final size:100
Alignment explanation
Indices: 79496545--79496729 Score: 289
Period size: 100 Copynumber: 1.8 Consensus size: 100
79496535 GTGAGGTCAT
* * *
79496545 GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGCACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
*
79496610 GCAGGCTACTATGTGTACCCAATAACTTCGATCAC
66 GCAGGCTACTACGTGTACCCAATAACTTCGATCAC
* * * *
79496645 GTGTGTAGCACTAAGTGCAGGCTACTACGTGTATCAGATGATTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGCACTAAGTACAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAG
79496710 TGCAGGCTACTACGTGTACC
65 TGCAGGCTACTACGTGTACC
79496730 GGATCATTGG
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
100 38 0.50
101 38 0.50
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
GTGTGTAGCACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCCAATAACTTCGATCAC
Found at i:79513823 original size:49 final size:50
Alignment explanation
Indices: 79513750--79513884 Score: 157
Period size: 49 Copynumber: 2.7 Consensus size: 50
79513740 AGCCGAAGTT
* * * *
79513750 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACAAATGCGA-C-CAAT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACAAACGCGACCTCAAC
* * *
79513798 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACAAACGCGACCTCAAC
** *
79513849 ATCTAATACACGTAGTAGGCTGCACTTAGTACTACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACA
79513885 CACGTGATCA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.50
50 33 0.45
51 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACAAACGCGACCTCAAC
Found at i:79520172 original size:29 final size:27
Alignment explanation
Indices: 79520124--79520201 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
79520114 GAAACCACCA
*
79520124 TATAACATA-AATGC-AGAAAATCTACC
1 TATAACATATAATGCGATAAAAT-TACC
* *
79520150 GTATAGCATATAATGCGATAAAATTGCC
1 -TATAACATATAATGCGATAAAATTACC
* * *
79520178 AATATCATATACTGCGATAAAATT
1 TATAACATATAATGCGATAAAATT
79520202 GTAACACCCC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
27 29 0.67
28 8 0.19
29 6 0.14
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (27 bp):
TATAACATATAATGCGATAAAATTACC
Found at i:79528353 original size:28 final size:28
Alignment explanation
Indices: 79528321--79528411 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
79528311 AAGATTTTCC
79528321 ACCTTTAATAGGTTTGCCACAAAGGCTT
1 ACCTTTAATAGGTTTGCCACAAAGGCTT
* *
79528349 ACCTTT-CTAGATTTTTGCCACAAAGGCTT
1 ACCTTTAATAG--GTTTGCCACAAAGGCTT
* * * * *
79528378 TCCTTTAACAGGATTACCACAGAGGCTT
1 ACCTTTAATAGGTTTGCCACAAAGGCTT
79528406 ACCTTT
1 ACCTTT
79528412 CCAGAGTTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
27 3 0.06
28 24 0.48
29 21 0.42
30 2 0.04
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.34
Consensus pattern (28 bp):
ACCTTTAATAGGTTTGCCACAAAGGCTT
Found at i:79528404 original size:57 final size:57
Alignment explanation
Indices: 79528322--79528439 Score: 157
Period size: 57 Copynumber: 2.1 Consensus size: 57
79528312 AGATTTTCCA
* * * * *
79528322 CCTTTAATAGGTTTGCCACAAAGGCTTACCTTTCTAGA-TTTTTGCCACAAAGGCTTT
1 CCTTTAACAGGATTACCACAAAGGCTTACCTTTCCAGAGTTTTT-CCACAAAGGCTAT
* *
79528379 CCTTTAACAGGATTACCACAGAGGCTTACCTTTCCAGAGTTTTTTCACAAAGGCTAT
1 CCTTTAACAGGATTACCACAAAGGCTTACCTTTCCAGAGTTTTTCCACAAAGGCTAT
79528436 CCTT
1 CCTT
79528440 CCACAAATGC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
57 48 0.91
58 5 0.09
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (57 bp):
CCTTTAACAGGATTACCACAAAGGCTTACCTTTCCAGAGTTTTTCCACAAAGGCTAT
Found at i:79528433 original size:29 final size:29
Alignment explanation
Indices: 79528337--79528433 Score: 92
Period size: 29 Copynumber: 3.4 Consensus size: 29
79528327 AATAGGTTTG
*
79528337 CCACAAAGGCTTACCTTTCTAGA-TTTTT
1 CCACAAAGGCTTACCTTTCCAGAGTTTTT
* * * *
79528365 GCCACAAAGGCTTTCCTTTAACAG-G-ATTA
1 -CCACAAAGGCTTACCTTT-CCAGAGTTTTT
*
79528394 CCACAGAGGCTTACCTTTCCAGAGTTTTT
1 CCACAAAGGCTTACCTTTCCAGAGTTTTT
*
79528423 TCACAAAGGCT
1 CCACAAAGGCT
79528434 ATCCTTCCAC
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
27 3 0.06
28 17 0.33
29 30 0.58
30 2 0.04
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (29 bp):
CCACAAAGGCTTACCTTTCCAGAGTTTTT
Found at i:79528714 original size:53 final size:53
Alignment explanation
Indices: 79528629--79528838 Score: 287
Period size: 53 Copynumber: 4.0 Consensus size: 53
79528619 AATTTTTCCC
* * * *
79528629 ATATGATGCCATAACCCACCAATTATGGTCTTACACAATATGGTCTTATTTCT
1 ATATGATGCCATAACCCACCAGTTACGATCTTACACAATATGGTCTTCTTTCT
* * *
79528682 ATATGATGCCATAACCCACTAGTTACGATCTTACATAGTATGGTCTTCTTTCT
1 ATATGATGCCATAACCCACCAGTTACGATCTTACACAATATGGTCTTCTTTCT
* * * *
79528735 ATATGATGCCATAACCCACCAGTTAC-AGTCATACACGATATGTTCTTCTTTCC
1 ATATGATGCCATAACCCACCAGTTACGA-TCTTACACAATATGGTCTTCTTTCT
* *
79528788 ATATGATGTCATAACCCACCAGTTACGGTCTTACACAATATGGTCTTCTTT
1 ATATGATGCCATAACCCACCAGTTACGATCTTACACAATATGGTCTTCTTT
79528839 AATGCTATGG
Statistics
Matches: 136, Mismatches: 19, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
52 1 0.01
53 135 0.99
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (53 bp):
ATATGATGCCATAACCCACCAGTTACGATCTTACACAATATGGTCTTCTTTCT
Found at i:79535919 original size:17 final size:17
Alignment explanation
Indices: 79535897--79535929 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
79535887 TAGAATTAGG
79535897 TTGAGAAGATT-ATTTAA
1 TTGAGAA-ATTAATTTAA
79535914 TTGAGAAATTAATTTA
1 TTGAGAAATTAATTTA
79535930 TTAACTTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (17 bp):
TTGAGAAATTAATTTAA
Found at i:79545892 original size:46 final size:46
Alignment explanation
Indices: 79545842--79546017 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
79545832 TGTTTGGGCA
79545842 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79545888 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
79545933 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
79545981 CCCGATCTCGTTGAGTTGAGTCCAAATTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79546018 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79549114 original size:90 final size:90
Alignment explanation
Indices: 79548956--79549124 Score: 223
Period size: 90 Copynumber: 1.9 Consensus size: 90
79548946 ACCAAATAGG
* * **
79548956 GTGCCAAAGCCATGTCCTAGACATAGTCTTACATGGGACCACACATCGATGCCATATCCCAGGTA
1 GTGCCAAAGCCATGTCCCAGACATAGTCTTACACGGGACCACACATCGATGCCATATCCCAGACA
79549021 TGGTCTTATACGAAGTCTCAAATCA
66 TGGTCTTATACGAAGTCTCAAATCA
* * * * * * *
79549046 GTGCCAACA-CCATGTCCCAGACATGGTCTTATACGGGACCTCATATTGATGCCATGTCCTAGAC
1 GTGCCAA-AGCCATGTCCCAGACATAGTCTTACACGGGACCACACATCGATGCCATATCCCAGAC
79549110 ATGGTCTTATACGAA
65 ATGGTCTTATACGAA
79549125 ATCACTTACC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
90 66 0.99
91 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (90 bp):
GTGCCAAAGCCATGTCCCAGACATAGTCTTACACGGGACCACACATCGATGCCATATCCCAGACA
TGGTCTTATACGAAGTCTCAAATCA
Found at i:79549140 original size:90 final size:90
Alignment explanation
Indices: 79548955--79549214 Score: 218
Period size: 90 Copynumber: 2.8 Consensus size: 90
79548945 CACCAAATAG
* * **
79548955 GGTGCCAAAGCCATGTCCTAGACATAGTCTTACATGGGACCACACATCGATGCCATATCCCAGGT
1 GGTGCCAAAGCCATGTCCCAGACATAGTCTTACACGGGACCACACATCGATGCCATATCCCAGAC
* * *
79549020 ATGGTCTTATACGAAGTCTCAAATC
66 ATGGTCTTATACGAAATCACAAACC
* * * * * * * *
79549045 AGTGCCAACA-CCATGTCCCAGACATGGTCTTATACGGGACCTCATATTGATGCCATGTCCTAGA
1 GGTGCCAA-AGCCATGTCCCAGACATAGTCTTACACGGGACCACACATCGATGCCATATCCCAGA
**
79549109 CATGGTCTTATACGAAATCACTTACC
65 CATGGTCTTATACGAAATCACAAACC
* * * * ** *
79549135 GGTGCCGAAGCCATATCCCTGATA-AGGTCTTACACGGGATCGCGTATCGATGCCGATGCCATGT
1 GGTGCCAAAGCCATGTCCCAGACATA-GTCTTACACGGGA-C-CACA-C-AT--CGATGCCATAT
79549199 CCCAGACATGGTCTTA
59 CCCAGACATGGTCTTA
79549215 CAGGGGATCT
Statistics
Matches: 132, Mismatches: 29, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
89 1 0.01
90 100 0.76
91 2 0.02
92 2 0.02
94 2 0.02
96 25 0.19
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (90 bp):
GGTGCCAAAGCCATGTCCCAGACATAGTCTTACACGGGACCACACATCGATGCCATATCCCAGAC
ATGGTCTTATACGAAATCACAAACC
Found at i:79551815 original size:25 final size:25
Alignment explanation
Indices: 79551787--79551850 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
79551777 TAATTTAGAC
*
79551787 AAATAA-AACTTAAATTTTAATATAA
1 AAATAATAA-TTAAATTTAAATATAA
* *
79551812 AAATAATTATTAAGTTTAAATATAA
1 AAATAATAATTAAATTTAAATATAA
*
79551837 AAATAATTATTAAA
1 AAATAATAATTAAA
79551851 ACCCAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 33 0.97
26 1 0.03
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (25 bp):
AAATAATAATTAAATTTAAATATAA
Found at i:79561227 original size:33 final size:33
Alignment explanation
Indices: 79561134--79561260 Score: 82
Period size: 33 Copynumber: 3.8 Consensus size: 33
79561124 TTCCAACTAA
* **
79561134 CTTGGATGAAGAAACTCC-TACTGATCCTGTGAC
1 CTTGGATGAAGAAACTCCAT-CTGTTCCTGAAAC
* * * *
79561167 CTTGGCA-GAGGAAAGCCCCA-GTATTCCTGAAAC
1 CTTGG-ATGAAGAAA-CTCCATCTGTTCCTGAAAC
**
79561200 CTTGGATGAAGAAACTCCATCTGTTCCTCCAAC
1 CTTGGATGAAGAAACTCCATCTGTTCCTGAAAC
* * *
79561233 ATT-CAGTGAAGAAACTCCAGCTGTTCCT
1 CTTGGA-TGAAGAAACTCCATCTGTTCCT
79561261 CCGTCATACA
Statistics
Matches: 72, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
32 6 0.08
33 62 0.86
34 4 0.06
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (33 bp):
CTTGGATGAAGAAACTCCATCTGTTCCTGAAAC
Found at i:79561261 original size:33 final size:33
Alignment explanation
Indices: 79561206--79561281 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
79561196 AAACCTTGGA
* *
79561206 TGAAGAAACTCCATCTGTTCCTCCAACATTCAG
1 TGAAGAAACTCCAGCTGTTCCTCCAACATACAG
**
79561239 TGAAGAAACTCCAGCTGTTCCTCCGTCATACAG
1 TGAAGAAACTCCAGCTGTTCCTCCAACATACAG
*
79561272 TGAAGGAACT
1 TGAAGAAACT
79561282 ACTATTCCTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (33 bp):
TGAAGAAACTCCAGCTGTTCCTCCAACATACAG
Found at i:79571413 original size:21 final size:22
Alignment explanation
Indices: 79571369--79571413 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
79571359 TTAAACTTAG
* *
79571369 TTAATCATGTTTATGTCATTAA
1 TTAACCATATTTATGTCATTAA
*
79571391 TTAACCATATTTAT-TCTTTAA
1 TTAACCATATTTATGTCATTAA
79571412 TT
1 TT
79571414 GTAACTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.31, C:0.11, G:0.04, T:0.53
Consensus pattern (22 bp):
TTAACCATATTTATGTCATTAA
Found at i:79586659 original size:21 final size:21
Alignment explanation
Indices: 79586635--79586677 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
79586625 TCCAAATATC
*
79586635 TCCAAACACATACCAATCATT
1 TCCAAACACAAACCAATCATT
* *
79586656 TCCATACATAAACCAATCATT
1 TCCAAACACAAACCAATCATT
79586677 T
1 T
79586678 AAGGCCATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAAACACAAACCAATCATT
Found at i:79593430 original size:43 final size:42
Alignment explanation
Indices: 79593351--79593464 Score: 156
Period size: 43 Copynumber: 2.7 Consensus size: 42
79593341 ACTAAGATTA
* *
79593351 CGTGTAAGACCATATCTGGGATATGGCATCGATACGAGACTT
1 CGTGTAAGACCATAACTAGGATATGGCATCGATACGAGACTT
* *
79593393 CGTGTAAGACCATAACTAGGCTATTGGCATCGATACGAGATTT
1 CGTGTAAGACCATAACTAGGATA-TGGCATCGATACGAGACTT
* * *
79593436 CATGTAAGACCATATCTGGGATATGGCAT
1 CGTGTAAGACCATAACTAGGATATGGCAT
79593465 TGGTTTGGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 26 0.41
43 37 0.59
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATAACTAGGATATGGCATCGATACGAGACTT
Found at i:79605988 original size:17 final size:17
Alignment explanation
Indices: 79605966--79606011 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 17
79605956 TTATGTGTAT
79605966 GGTAAGTAAAATTATAA
1 GGTAAGTAAAATTATAA
79605983 GGTAAGTATCTAAAATTATAA
1 GGTAAG----TAAAATTATAA
79606004 GGTAAGTA
1 GGTAAGTA
79606012 TCAATATTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
17 8 0.32
21 17 0.68
ACGTcount: A:0.48, C:0.02, G:0.20, T:0.30
Consensus pattern (17 bp):
GGTAAGTAAAATTATAA
Found at i:79606024 original size:25 final size:21
Alignment explanation
Indices: 79605972--79606013 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
79605962 GTATGGTAAG
79605972 TAAAATTATAAGGTAAGTATC
1 TAAAATTATAAGGTAAGTATC
79605993 TAAAATTATAAGGTAAGTATC
1 TAAAATTATAAGGTAAGTATC
79606014 AATATTGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.05, G:0.14, T:0.33
Consensus pattern (21 bp):
TAAAATTATAAGGTAAGTATC
Found at i:79607636 original size:20 final size:20
Alignment explanation
Indices: 79607598--79607645 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
79607588 TAAATTCTAA
**
79607598 AAAGATAAATACATTTAATT
1 AAAGATAAATACAGATAATT
*
79607618 AAAGATAAATAGAGATAATT
1 AAAGATAAATACAGATAATT
79607638 AAA-ATAAA
1 AAAGATAAA
79607646 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (20 bp):
AAAGATAAATACAGATAATT
Found at i:79607656 original size:19 final size:18
Alignment explanation
Indices: 79607632--79607675 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
79607622 ATAAATAGAG
79607632 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
79607652 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
79607669 ATAATTA
1 ATAATTA
79607676 TCCTAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:79607691 original size:15 final size:15
Alignment explanation
Indices: 79607671--79607703 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
79607661 TAATCCTAAT
79607671 AATTATCCTAATATA
1 AATTATCCTAATATA
79607686 AATTATCCTAATATA
1 AATTATCCTAATATA
79607701 AAT
1 AAT
79607704 AAAATGGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTATCCTAATATA
Found at i:79609303 original size:15 final size:16
Alignment explanation
Indices: 79609283--79609336 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
79609273 TTAATATCTG
79609283 AAAATAATAA-ATAAT
1 AAAATAATAAGATAAT
*
79609298 AAAATAATAAGATAAA
1 AAAATAATAAGATAAT
*
79609314 ATAAATAA-AATATAAAT
1 A-AAATAATAAGAT-AAT
79609331 AAAATA
1 AAAATA
79609337 TAAATAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
15 10 0.30
16 14 0.42
17 9 0.27
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (16 bp):
AAAATAATAAGATAAT
Found at i:79609314 original size:28 final size:26
Alignment explanation
Indices: 79609283--79609358 Score: 65
Period size: 28 Copynumber: 3.0 Consensus size: 26
79609273 TTAATATCTG
79609283 AAAATAATAAATAAT-AAA-AT-AAT
1 AAAATAATAAATAATAAAATATAAAT
*
79609306 AAGAT-A-AAATAAATAAAATATAAAT
1 AAAATAATAAAT-AATAAAATATAAAT
79609331 AAAAT-ATAAATAAAATATAAATATAAAT
1 AAAATAATAAAT--AATA-AAATATAAAT
79609359 TGGGTTGCCT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
21 4 0.09
22 4 0.09
23 7 0.16
24 2 0.05
25 8 0.18
26 4 0.09
27 5 0.11
28 10 0.23
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.26
Consensus pattern (26 bp):
AAAATAATAAATAATAAAATATAAAT
Found at i:79609323 original size:22 final size:22
Alignment explanation
Indices: 79609284--79609358 Score: 86
Period size: 22 Copynumber: 3.5 Consensus size: 22
79609274 TAATATCTGA
79609284 AAATAATAAAT-AATAAAATAAT
1 AAATAA-AAATAAATAAAATAAT
79609306 AAGAT-AAAATAAATAAAAT-AT
1 AA-ATAAAAATAAATAAAATAAT
79609327 AAATAAAATATAAATAAAAT-AT
1 AAATAAAA-ATAAATAAAATAAT
*
79609349 AAATATAAAT
1 AAATAAAAAT
79609359 TGGGTTGCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 9
0.83 0.02 0.16
Matches are distributed among these distances:
20 2 0.04
21 13 0.27
22 31 0.65
23 2 0.04
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.27
Consensus pattern (22 bp):
AAATAAAAATAAATAAAATAAT
Found at i:79609330 original size:11 final size:11
Alignment explanation
Indices: 79609295--79609358 Score: 87
Period size: 11 Copynumber: 5.7 Consensus size: 11
79609285 AATAATAAAT
79609295 AATAAAATAATA
1 AATAAAAT-ATA
79609307 AGAT-AAA-ATA
1 A-ATAAAATATA
79609317 AATAAAATATA
1 AATAAAATATA
79609328 AATAAAATATA
1 AATAAAATATA
79609339 AATAAAATATA
1 AATAAAATATA
79609350 AATATAAAT
1 AATA-AAAT
79609359 TGGGTTGCCT
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.04
10 7 0.15
11 29 0.60
12 8 0.17
13 2 0.04
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.27
Consensus pattern (11 bp):
AATAAAATATA
Found at i:79609341 original size:6 final size:6
Alignment explanation
Indices: 79609309--79609358 Score: 72
Period size: 6 Copynumber: 9.0 Consensus size: 6
79609299 AAATAATAAG
79609309 ATAAA- ATAAAT A-AAAT ATAAAT A-AAAT ATAAAT A-AAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
79609353 ATAAAT
1 ATAAAT
79609359 TGGGTTGCCT
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
5 20 0.49
6 21 0.51
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (6 bp):
ATAAAT
Found at i:79611189 original size:46 final size:46
Alignment explanation
Indices: 79611136--79611308 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
79611126 TATTTGGACA
*
79611136 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * * *
79611182 TCCGAACTCGTTGAGTTCAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
79611227 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
79611275 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
79611309 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 59 0.57
47 27 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:79611297 original size:93 final size:93
Alignment explanation
Indices: 79611134--79611303 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
79611124 GATATTTGGA
* * *
79611134 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
79611199 CAGTCCGAGTTCGTGAAATGTAACTAGG
66 CAGTCCGAGTTCGTGAAATGTAACTAGG
* *
79611227 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
*
79611292 GAGTCCGAGTTC
66 CAGTCCGAGTTC
79611304 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
CAGTCCGAGTTCGTGAAATGTAACTAGG
Found at i:79638994 original size:33 final size:33
Alignment explanation
Indices: 79638957--79639027 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
79638947 ATCGGGTCCA
* *
79638957 GAAACT-CAGACCATTTCTACAACCATGGGTGAG
1 GAAACTACA-ACCATTCCTACAAACATGGGTGAG
* *
79638990 GAAACTACAACCATTCCTGCAAACTTGGGTGAG
1 GAAACTACAACCATTCCTACAAACATGGGTGAG
79639023 GAAAC
1 GAAAC
79639028 AACTGCTACT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 31 0.94
34 2 0.06
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (33 bp):
GAAACTACAACCATTCCTACAAACATGGGTGAG
Found at i:79639370 original size:33 final size:33
Alignment explanation
Indices: 79639300--79639419 Score: 91
Period size: 33 Copynumber: 3.6 Consensus size: 33
79639290 ACCATTCCTG
* * * * * **
79639300 CAACCTTAGGTCAAGAAACTCCTACCCTTCCTG
1 CAACCTTGGGTGAAGAAACTCATATCATTCCCA
* *
79639333 CAACCTTGGGTGAAGGAACTCATAGT-ATTCCCT
1 CAACCTTGGGTGAAGAAACTCATA-TCATTCCCA
* * *
79639366 CAACCTCGAGTGAAGAAAATCATATCATTCCCA
1 CAACCTTGGGTGAAGAAACTCATATCATTCCCA
*
79639399 CTAACC-TGGATGAAGAAACTC
1 C-AACCTTGGGTGAAGAAACTC
79639420 CTACTGATCC
Statistics
Matches: 67, Mismatches: 17, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
32 1 0.01
33 62 0.93
34 4 0.06
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (33 bp):
CAACCTTGGGTGAAGAAACTCATATCATTCCCA
Found at i:79639907 original size:651 final size:646
Alignment explanation
Indices: 79638623--79639808 Score: 1484
Period size: 651 Copynumber: 1.8 Consensus size: 646
79638613 TTCTTACAAC
*
79638623 TGTGTATGAGGAAACAACCATTCCTGCAACCTTAGGTCAAGAAACTCCTACCTTTCCTGCAACCT
1 TGTGTATGAGGAAACAACCATTCCTGCAACCTTAGGTCAAGAAACTCCTACCCTTCCTGCAACCT
** *
79638688 TGGGTGAAGAAACTTGTAGCACTCCCTCAACCTCAAGCGAAGCAAATCGAAGCATTCCCACTAAC
66 TGGGTGAAGAAACTCATAGCACTCCCTCAACCTCAAGCGAAGAAAATCGAAGCATTCCCACTAAC
* * * *
79638753 CTGGCCGAAGAAACTCGTGCCAATCCAGTGACCTCGGCCGAGGAAACCCCCAGTACTCCGGAAAC
131 CTGGACGAAGAAACTCCTACCAATCCAGTGACCTCGGCAGAGGAAACCCCCAGTACTCCGGAAAC
** * * * * * *
79638818 CTTGGGTGAAGAAAGTCCATCTGTTCCTCTGTCTTTCAGTGAAACTCCTGCCATTCTTCCATCAT
196 CTTGGGTGAAGAAACCCCAACCGTTCCTCTGACATTCAGTGAAACTCCGGCCATTCCTCCATCAT
*
79638883 TCAGCAAAGAAACTCCTACAATTCCTCATCTTTTCAGTGAGGGAACTCCTACTGTTCCAGTAACA
261 TCAGCAAAGAAA--CCTACAATTCCTCA-CTTTTCAATGAGGGAACTCC-ACTGTTCCAGTAACA
* * *
79638948 TCGGGTCCAGAAACTCAGACCATTTCTACAACCATGGGTGAGGAAACTACAACCATTCCTGCAAA
322 TCGGGTCCAGAAACTCAGACCATTCCTACAACCACGGGTGAGGAAACTACAAACATTCCTGCAAA
* * * *
79639013 CTTGGGTGAGGAAACAACTGCTACTGAAACCTTGCATGAGGAAACTCTCGCTGTTCCTACAACTT
387 CTTAGGTGAGGAAACAACTGCTACTGAAACCCTGCATGAGGAAACTCTCGCTATTCCGACAACTT
* * *** ** *
79639078 TGGCTGAGGACAATCCAACTATTATTGCAAAATTGGATGAGGAAACTCCAATGAATCCTAAAACT
452 TGGCTGAGAACAATCCAACTATGACCACAAAATTGGATGAGGAAACTCCAACCAATCCCAAAACT
* * * *
79639143 TTGGATGAGGAAACTAAAACGAGTTCCACAAACTCAGCTGAGGAAACTTCGACTACTCCCACAAC
517 TTAGATGAGGAAACTAAAACGACTCCCACAAACTCAGC-GAGGAAACTTCAACTACTCCCACAAC
* * ** ** **
79639208 CTCAGGTGTGGAAACTCCTACCATTCCTGGAATGTTGGGTAGGGAAACTCTGACCATTCCTACTA
581 CTCAGGCGAGGAAACTCCTACCATTCCTACAATGACGGAAAGGGAAACTCTGACCATTCCTACTA
79639273 T
646 T
*
79639274 TGTGTGTGAGGAAACAACCATTCCTGCAACCTTAGGTCAAGAAACTCCTACCCTTCCTGCAACCT
1 TGTGTATGAGGAAACAACCATTCCTGCAACCTTAGGTCAAGAAACTCCTACCCTTCCTGCAACCT
* * * * * *
79639339 TGGGTGAAGGAACTCATAGTATTCCCTCAACCTCGAGTGAAGAAAATC-ATATCATTCCCACTAA
66 TGGGTGAAGAAACTCATAGCACTCCCTCAACCTCAAGCGAAGAAAATCGA-AGCATTCCCACTAA
* ** * ** * *
79639403 CCTGGATGAAGAAACTCCTACTGATCCAGTGACCTTGGCAGAGGAAAGGCCCAGTATTCCTGAAA
130 CCTGGACGAAGAAACTCCTACCAATCCAGTGACCTCGGCAGAGGAAACCCCCAGTACTCCGGAAA
**
79639468 CCTTGGGTGAAGAAACCCCAACCGTTCCTCTGACATTCAGTGAAGAAACTCCGGTTATTCCTCCA
195 CCTTGGGTGAAGAAACCCCAACCGTTCCTCTGACATTCAGT---GAAACTCCGGCCATTCCTCCA
* * * * * *
79639533 TCATTCAGCGAAGGAA-CTACTATTCCTC-CTTCCTTCAATGAGGGAAGT-C-CTGTTCCTGTAG
257 TCATTCAGCAAAGAAACCTACAATTCCTCACTT--TTCAATGAGGGAACTCCACTGTTCCAGTAA
* * *
79639594 CATTGGGTCCAGAAACTCAGACCATTCCTACAACCACGGGTGAGGATACTGCAAACATTCCTGCA
320 CATCGGGTCCAGAAACTCAGACCATTCCTACAACCACGGGTGAGGAAACTACAAACATTCCTGCA
* * * ** *
79639659 ACCTTAGGTGAGGAAACTACAAGTGCTCCTGTGACCCTGCATGAGGAAACTCTGGCTATTCCGAC
385 AACTTAGGTGAGG-AA--ACAACTGCTACTGAAACCCTGCATGAGGAAACTCTCGCTATTCCGAC
* *
79639724 AACTTTGGCTGAGAACAGTCCAACTATGACCACAAAATTGGATGAGGAAACTCCAACCAGTCCCA
447 AACTTTGGCTGAGAACAATCCAACTATGACCACAAAATTGGATGAGGAAACTCCAACCAATCCCA
*
79639789 CAAAC-TTAGCTGAGGAAACT
512 -AAACTTTAGATGAGGAAACT
79639809 TTGACTACTC
Statistics
Matches: 457, Mismatches: 68, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
648 80 0.18
649 5 0.01
650 2 0.00
651 335 0.73
652 4 0.01
654 31 0.07
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (646 bp):
TGTGTATGAGGAAACAACCATTCCTGCAACCTTAGGTCAAGAAACTCCTACCCTTCCTGCAACCT
TGGGTGAAGAAACTCATAGCACTCCCTCAACCTCAAGCGAAGAAAATCGAAGCATTCCCACTAAC
CTGGACGAAGAAACTCCTACCAATCCAGTGACCTCGGCAGAGGAAACCCCCAGTACTCCGGAAAC
CTTGGGTGAAGAAACCCCAACCGTTCCTCTGACATTCAGTGAAACTCCGGCCATTCCTCCATCAT
TCAGCAAAGAAACCTACAATTCCTCACTTTTCAATGAGGGAACTCCACTGTTCCAGTAACATCGG
GTCCAGAAACTCAGACCATTCCTACAACCACGGGTGAGGAAACTACAAACATTCCTGCAAACTTA
GGTGAGGAAACAACTGCTACTGAAACCCTGCATGAGGAAACTCTCGCTATTCCGACAACTTTGGC
TGAGAACAATCCAACTATGACCACAAAATTGGATGAGGAAACTCCAACCAATCCCAAAACTTTAG
ATGAGGAAACTAAAACGACTCCCACAAACTCAGCGAGGAAACTTCAACTACTCCCACAACCTCAG
GCGAGGAAACTCCTACCATTCCTACAATGACGGAAAGGGAAACTCTGACCATTCCTACTAT
Found at i:79649584 original size:11 final size:11
Alignment explanation
Indices: 79649493--79649584 Score: 64
Period size: 11 Copynumber: 8.5 Consensus size: 11
79649483 ATGCAAAAAA
79649493 ATTATTTT-TT
1 ATTATTTTGTT
*
79649503 ATTATTCTGTT
1 ATTATTTTGTT
* *
79649514 GTTATTTTTTT
1 ATTATTTTGTT
*
79649525 ATTGTTTT-TCT
1 ATTATTTTGT-T
79649536 -TTATTTTGTT
1 ATTATTTTGTT
* ***
79649546 ACTATTTCACT
1 ATTATTTTGTT
* *
79649557 ATTATATTATT
1 ATTATTTTGTT
79649568 ATTATTTTGTT
1 ATTATTTTGTT
79649579 ATTATT
1 ATTATT
79649585 GTATAACTCT
Statistics
Matches: 61, Mismatches: 17, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
10 15 0.25
11 46 0.75
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (11 bp):
ATTATTTTGTT
Found at i:79661542 original size:26 final size:26
Alignment explanation
Indices: 79661506--79661557 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
79661496 TTAAGCAATG
79661506 TTTGGTGTCTTATTTGCGCACTAATA
1 TTTGGTGTCTTATTTGCGCACTAATA
79661532 TTTGGTGTCTTATTTGCGCACTAATA
1 TTTGGTGTCTTATTTGCGCACTAATA
79661558 AATAAGTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.15, G:0.19, T:0.46
Consensus pattern (26 bp):
TTTGGTGTCTTATTTGCGCACTAATA
Found at i:79666239 original size:15 final size:15
Alignment explanation
Indices: 79666219--79666249 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79666209 TTTTAGTTAG
*
79666219 TAGTTTTATTTAATT
1 TAGTTTAATTTAATT
79666234 TAGTTTAATTTAATT
1 TAGTTTAATTTAATT
79666249 T
1 T
79666250 TTACAAGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (15 bp):
TAGTTTAATTTAATT
Found at i:79667625 original size:30 final size:30
Alignment explanation
Indices: 79667591--79667651 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
79667581 TTCCCGAGCC
79667591 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
79667621 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
79667651 T
1 T
79667652 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:79676242 original size:15 final size:15
Alignment explanation
Indices: 79676222--79676252 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79676212 CACTAAGTAT
79676222 AACATTAATAATAAA
1 AACATTAATAATAAA
*
79676237 AACATTATTAATAAA
1 AACATTAATAATAAA
79676252 A
1 A
79676253 TAACTACAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (15 bp):
AACATTAATAATAAA
Found at i:79676768 original size:13 final size:14
Alignment explanation
Indices: 79676740--79676768 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
79676730 TTTAATTATT
79676740 ATCATATTTAATAA
1 ATCATATTTAATAA
79676754 ATCATATTT-ATAA
1 ATCATATTTAATAA
79676767 AT
1 AT
79676769 AAAAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (14 bp):
ATCATATTTAATAA
Found at i:79677021 original size:19 final size:17
Alignment explanation
Indices: 79676980--79677022 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
79676970 CATGAAATTT
79676980 TATTATAAAATAAAATCA
1 TATT-TAAAATAAAATCA
*
79676998 TATTTAAAGATAAAAGTTA
1 TATTTAAA-ATAAAA-TCA
79677017 TATTTA
1 TATTTA
79677023 TTTAATTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 4 0.18
18 10 0.45
19 8 0.36
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (17 bp):
TATTTAAAATAAAATCA
Found at i:79679520 original size:47 final size:47
Alignment explanation
Indices: 79679417--79679511 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
79679407 TGATAACATC
79679417 ATATAACCTTTTTGTTTGTTAAACATAGAGTTAATGAAAACATTAGT
1 ATATAACCTTTTTGTTTGTTAAACATAGAGTTAATGAAAACATTAGT
*
79679464 ATATAACCTTTTTGTTTGTTAAACATAGAGTTAATGAAAATATTAGT
1 ATATAACCTTTTTGTTTGTTAAACATAGAGTTAATGAAAACATTAGT
79679511 A
1 A
79679512 CTTGACCTTG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (47 bp):
ATATAACCTTTTTGTTTGTTAAACATAGAGTTAATGAAAACATTAGT
Found at i:79680280 original size:32 final size:32
Alignment explanation
Indices: 79680239--79680301 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
79680229 ACACAGAACT
79680239 AGAAAAATGTTTTCTCTCTTTTATTTAGGGTA
1 AGAAAAATGTTTTCTCTCTTTTATTTAGGGTA
79680271 AGAAAAATGTTTTCTCTCTTTTATTTAGGGT
1 AGAAAAATGTTTTCTCTCTTTTATTTAGGGT
79680302 GAAAACAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.27, C:0.10, G:0.16, T:0.48
Consensus pattern (32 bp):
AGAAAAATGTTTTCTCTCTTTTATTTAGGGTA
Done.