Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 251 of 325
Found at i:79682869 original size:41 final size:41
Alignment explanation
Indices: 79682775--79682853 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
79682765 TGTTTTATTA
* * *
79682775 TAGACAAATTTAAAAGAATTAATTATTAAAAATGTTAATTG
1 TAGACAAATTTAAAAGAATAAATCATTAAAAATATTAATTG
79682816 TAGACAAATTTAAAAGAATAAATCATTAAAAATATTAA
1 TAGACAAATTTAAAAGAATAAATCATTAAAAATATTAA
79682854 ATTTCAACTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.33
Consensus pattern (41 bp):
TAGACAAATTTAAAAGAATAAATCATTAAAAATATTAATTG
Found at i:79683015 original size:25 final size:27
Alignment explanation
Indices: 79682970--79683021 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
79682960 GTTTGAGTTC
* *
79682970 GAAATTATAATTATATAAAAGGAATAT
1 GAAATTATAATTACATAAAAGAAATAT
79682997 GAAA-TATAATT-CATAAAAGAAATAT
1 GAAATTATAATTACATAAAAGAAATAT
79683022 AGCAATTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 12 0.52
26 7 0.30
27 4 0.17
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.31
Consensus pattern (27 bp):
GAAATTATAATTACATAAAAGAAATAT
Found at i:79683900 original size:13 final size:13
Alignment explanation
Indices: 79683882--79683906 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79683872 TATTTTAATA
79683882 TTATTTTGTGTGT
1 TTATTTTGTGTGT
79683895 TTATTTTGTGTG
1 TTATTTTGTGTG
79683907 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:79685519 original size:41 final size:40
Alignment explanation
Indices: 79685474--79685827 Score: 439
Period size: 41 Copynumber: 8.7 Consensus size: 40
79685464 CGGACGTTAC
79685474 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAA-TAATTCAGACTTTAA
79685515 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
*
79685556 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
*
79685597 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
79685638 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
* * *
79685679 GTCTAACAGGCTTAATGCCGGTGATATATTTTAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
* *
79685720 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
* *
79685761 GTCTAGCAGGC-TAAGTGCCGGTGTACTGAA-TCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTG-AAT-AATTCAGACTTTAA
* ** *
79685802 GCCTAGCAGGCAAAATACCGGTGAAT
1 GTCTAGCAGGCTTAATGCCGGTGAAT
79685828 CTGTTTAAAT
Statistics
Matches: 280, Mismatches: 18, Indels: 31
0.85 0.05 0.09
Matches are distributed among these distances:
39 8 0.03
40 7 0.03
41 254 0.91
42 2 0.01
43 8 0.03
44 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (40 bp):
GTCTAGCAGGCTTAATGCCGGTGAATAATTCAGACTTTAA
Found at i:79685574 original size:82 final size:83
Alignment explanation
Indices: 79685474--79685827 Score: 499
Period size: 82 Copynumber: 4.3 Consensus size: 83
79685464 CGGACGTTAC
79685474 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
1 GTCTAGCAGGCTTAATGCCGGTGAA-TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
79685537 GATACATTTCAGACTTTAA
65 GATACATTTCAGACTTTAA
*
79685556 GTCTAGCAGGCTTAATGCCGGTG-ATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGAATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
*
79685620 ATATATTTCAGACTTTAA
66 ATACATTTCAGACTTTAA
*
79685638 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAAGTCTAACAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGAATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
* *
79685702 ATATATTTTAGACTTTAA
66 ATACATTTCAGACTTTAA
* *
79685720 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGT
1 GTCTAGCAGGCTTAATGCCGGTGAATACATTTCAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGT
* *
79685783 G-TAC-TGAATCAGGCTTTAA
65 GATACAT--TTCAGACTTTAA
* ** *
79685802 GCCTAGCAGGCAAAATACCGGTGAAT
1 GTCTAGCAGGCTTAATGCCGGTGAAT
79685828 CTGTTTAAAT
Statistics
Matches: 251, Mismatches: 15, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
80 3 0.01
81 7 0.03
82 239 0.95
83 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (83 bp):
GTCTAGCAGGCTTAATGCCGGTGAATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
ATACATTTCAGACTTTAA
Found at i:79685693 original size:123 final size:123
Alignment explanation
Indices: 79685474--79685783 Score: 534
Period size: 123 Copynumber: 2.5 Consensus size: 123
79685464 CGGACGTTAC
*
79685474 GTCTAGCAGGCTTAATGCCGGTGA-AGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATA-TATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
*
79685538 ATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
65 ATACATTTCAGACTTTAAGTCTAACAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
79685597 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
*
79685662 TACATTTCAGACTTTAAGTCTAACAGGCTTAATGCCGGTGATATATTTTAGACTTTAA
66 TACATTTCAGACTTTAAGTCTAACAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
* * *
79685720 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTG
79685784 TACTGAATCA
Statistics
Matches: 179, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
122 3 0.02
123 175 0.98
124 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (123 bp):
GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAAGTCTAACAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
Found at i:79691697 original size:13 final size:13
Alignment explanation
Indices: 79691679--79691703 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79691669 TATTTTAATA
79691679 TTATTTTGTGTGT
1 TTATTTTGTGTGT
79691692 TTATTTTGTGTG
1 TTATTTTGTGTG
79691704 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:79693318 original size:41 final size:40
Alignment explanation
Indices: 79693273--79693623 Score: 474
Period size: 41 Copynumber: 8.6 Consensus size: 40
79693263 CGGACGTTAC
79693273 GTCTAGCAGGCTTAATGCCGGTGAAGTA-ATTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTCAGACTTTAA
79693314 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATACA-TTCAGACTTTAA
*
79693355 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATACA-TTCAGACTTTAA
*
79693396 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATACA-TTCAGACTTTAA
79693437 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATACA-TTCAGACTTTAA
* * *
79693478 GTCTAACAGGCTTAATGCCGGTGATATATTTAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATACATTCAGACTTTAA
* *
79693518 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACA-TTCAGACTTTAA
* *
79693559 GTCTAGCAGGC-TAAGTGCCGGTG-TACTGAATCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTGATAC--ATTCAGACTTTAA
* * **
79693600 GCCTAGTAGGCAAAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGA
79693624 ATCTGTTTAA
Statistics
Matches: 285, Mismatches: 17, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
39 2 0.01
40 45 0.16
41 235 0.82
42 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (40 bp):
GTCTAGCAGGCTTAATGCCGGTGATACATTCAGACTTTAA
Found at i:79693492 original size:123 final size:122
Alignment explanation
Indices: 79693273--79693581 Score: 532
Period size: 123 Copynumber: 2.5 Consensus size: 122
79693263 CGGACGTTAC
*
79693273 GTCTAGCAGGCTTAATGCCGGTGA-AGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATA-TATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
*
79693337 ATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
65 ATACATTTCAGACTTTAAGTCTAACAGGCTTAATGCCGGTGATATATTT-AGACTTTAA
79693396 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
79693461 TACATTTCAGACTTTAAGTCTAACAGGCTTAATGCCGGTGATATATTTAGACTTTAA
66 TACATTTCAGACTTTAAGTCTAACAGGCTTAATGCCGGTGATATATTTAGACTTTAA
* * *
79693518 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTG
79693582 TACTGAATCA
Statistics
Matches: 179, Mismatches: 5, Indels: 5
0.95 0.03 0.03
Matches are distributed among these distances:
121 3 0.02
122 66 0.37
123 109 0.61
124 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (122 bp):
GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAAGTCTAACAGGCTTAATGCCGGTGATATATTTAGACTTTAA
Found at i:79696032 original size:16 final size:16
Alignment explanation
Indices: 79695992--79696038 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
79695982 GACCTGACCC
79695992 ATTTTT-TATTTTATA
1 ATTTTTATATTTTATA
* *
79696007 ATACTTTATATTTTATT
1 AT-TTTTATATTTTATA
*
79696024 ATTTTTATATATTAT
1 ATTTTTATATTTTAT
79696039 GTAATTTAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 2 0.08
16 14 0.54
17 10 0.38
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTTTTATATTTTATA
Found at i:79696540 original size:12 final size:13
Alignment explanation
Indices: 79696523--79696552 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
79696513 TTTCAAACTA
79696523 AAATAC-ATGAGT
1 AAATACAATGAGT
79696535 AAATACAATGAGT
1 AAATACAATGAGT
79696548 AAATA
1 AAATA
79696553 TAGATATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (13 bp):
AAATACAATGAGT
Found at i:79697193 original size:19 final size:19
Alignment explanation
Indices: 79697169--79697214 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
79697159 AAATTTATCC
79697169 ATCACTTCTTCTATATCTA
1 ATCACTTCTTCTATATCTA
*
79697188 ATCACTTCTTCTATATCTT
1 ATCACTTCTTCTATATCTA
79697207 ATCACTTC
1 ATCACTTC
79697215 ATTATTCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (19 bp):
ATCACTTCTTCTATATCTA
Found at i:79697604 original size:26 final size:26
Alignment explanation
Indices: 79697573--79697623 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
79697563 AAGACATTCC
*
79697573 TTTCATATTCCGCCACAAAAGCTTTA
1 TTTCATATTACGCCACAAAAGCTTTA
*
79697599 TTTCATATTACGCCACAAAGGCTTT
1 TTTCATATTACGCCACAAAAGCTTT
79697624 TATTGCAGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.35
Consensus pattern (26 bp):
TTTCATATTACGCCACAAAAGCTTTA
Found at i:79705887 original size:46 final size:46
Alignment explanation
Indices: 79705820--79705994 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
79705810 CGTAACCCGC
* *
79705820 CCATAAGCGAACTTGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
79705866 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * *
79705916 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTTGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
79705959 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
79705995 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.55
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:79705937 original size:93 final size:93
Alignment explanation
Indices: 79705827--79705999 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
79705817 CGCCCATAAG
* *
79705827 CGAACTTGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
79705892 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
79705920 CGAACTCGGACTCAACTCAACGAGCTTGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
79705985 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
79706000 CAAATATCCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:79710411 original size:46 final size:46
Alignment explanation
Indices: 79710344--79710518 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
79710334 TGTAACCCGC
* *
79710344 CCATAAGCGAACTTGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
79710390 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * *
79710440 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTTGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
79710483 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
79710519 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.55
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:79710461 original size:93 final size:93
Alignment explanation
Indices: 79710351--79710523 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
79710341 CGCCCATAAG
* *
79710351 CGAACTTGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
79710416 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
79710444 CGAACTCGGACTCAACTCAACGAGCTTGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
79710509 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
79710524 CAAATATCCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:79717027 original size:28 final size:28
Alignment explanation
Indices: 79716996--79717065 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
79716986 ATATGAAACT
79716996 TAGTGTGCGAAATATTGAGAATGGA-ACG
1 TAGTGTGCGAAATATTGAGAAT-GACACG
* * *
79717024 TAGTGTGTGAGATATTGAGAATGACACT
1 TAGTGTGCGAAATATTGAGAATGACACG
*
79717052 TAGTGTTCGAAATA
1 TAGTGTGCGAAATA
79717066 CCGAATGGTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 2 0.06
28 33 0.94
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (28 bp):
TAGTGTGCGAAATATTGAGAATGACACG
Found at i:79723914 original size:16 final size:16
Alignment explanation
Indices: 79723893--79723940 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
79723883 AACCCAATTT
*
79723893 TTATTTCTCTTTATTG
1 TTATTTTTCTTTATTG
*
79723909 TTATTTTTCTTTATTT
1 TTATTTTTCTTTATTG
79723925 TTATTTTTCATTTATT
1 TTATTTTTC-TTTATT
79723941 ATTTTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 23 0.79
17 6 0.21
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.75
Consensus pattern (16 bp):
TTATTTTTCTTTATTG
Found at i:79723960 original size:21 final size:21
Alignment explanation
Indices: 79723934--79723983 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
79723924 TTTATTTTTC
* *
79723934 ATTTATTATTTTATTTTAATT
1 ATTTATTATTTTATCTTAATG
79723955 ATTTATTATTTTATCTTAATG
1 ATTTATTATTTTATCTTAATG
79723976 ATTTATTA
1 ATTTATTA
79723984 CTTAATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
ATTTATTATTTTATCTTAATG
Found at i:79731047 original size:12 final size:12
Alignment explanation
Indices: 79731030--79731063 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
79731020 CACCCGGGTA
79731030 CTACCACACGGC
1 CTACCACACGGC
*
79731042 CTACCACACGGG
1 CTACCACACGGC
*
79731054 CGACCACACG
1 CTACCACACG
79731064 CCCGTGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.47, G:0.21, T:0.06
Consensus pattern (12 bp):
CTACCACACGGC
Found at i:79735301 original size:6 final size:6
Alignment explanation
Indices: 79735290--79735339 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
79735280 AAGAAATGAT
*** *
79735290 AAATAA AAATAA AAATAA ACGCAA AAATAA AAAT-A AAATAA AAAGAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
79735337 AAA
1 AAA
79735340 CAAATTGAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
5 5 0.14
6 31 0.86
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (6 bp):
AAATAA
Found at i:79735339 original size:24 final size:24
Alignment explanation
Indices: 79735290--79735339 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
79735280 AAGAAATGAT
* *
79735290 AAATAAAAATAAAAATAAACGCAA
1 AAATAAAAATAAAAATAAAAGAAA
79735314 AAATAAAAAT-AAAATAAAAAGAAA
1 AAATAAAAATAAAAAT-AAAAGAAA
79735338 AA
1 AA
79735340 CAAATTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (24 bp):
AAATAAAAATAAAAATAAAAGAAA
Found at i:79737050 original size:24 final size:22
Alignment explanation
Indices: 79736997--79737049 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 22
79736987 AAATGGCAAG
79736997 AATAAAATAAAAATAGCAAATA
1 AATAAAATAAAAATAGCAAATA
79737019 AATAAAATAAAATATAAGCAAATAA
1 AATAAAATAAAA-AT-AGCAAAT-A
79737044 AATAAA
1 AATAAA
79737050 TTAGAGGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 12 0.43
23 2 0.07
24 7 0.25
25 7 0.25
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.19
Consensus pattern (22 bp):
AATAAAATAAAAATAGCAAATA
Found at i:79744010 original size:42 final size:42
Alignment explanation
Indices: 79743960--79744042 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
79743950 ATTAAGAGAA
79743960 TGTTTTTAAACTAACACTAATTCTCTAATTAACTAAGATTGT
1 TGTTTTTAAACTAACACTAATTCTCTAATTAACTAAGATTGT
*
79744002 TGTTTTTAAACTAACACTAATTCTCTAATTAATTAAGATTG
1 TGTTTTTAAACTAACACTAATTCTCTAATTAACTAAGATTG
79744043 CGACAGAGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.43
Consensus pattern (42 bp):
TGTTTTTAAACTAACACTAATTCTCTAATTAACTAAGATTGT
Found at i:79747606 original size:40 final size:40
Alignment explanation
Indices: 79747562--79747685 Score: 189
Period size: 40 Copynumber: 3.1 Consensus size: 40
79747552 TGACATATCA
*
79747562 GCTAAATATGGCACTTAGTGTGCGGTTCAGTATAGCTTCG
1 GCTAAATTTGGCACTTAGTGTGCGGTTCAGTATAGCTTCG
*
79747602 GCTAAATTTGGCACTTAGTGTGCAGTTCAGTATAGCTTCG
1 GCTAAATTTGGCACTTAGTGTGCGGTTCAGTATAGCTTCG
*
79747642 GCTAAATTTGGCACTTAGTGTG-GGATTTGAG-ATAGCTTCG
1 GCTAAATTTGGCACTTAGTGTGCGG--TTCAGTATAGCTTCG
79747682 GCTA
1 GCTA
79747686 TGTACAACAC
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 73 0.94
41 4 0.05
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (40 bp):
GCTAAATTTGGCACTTAGTGTGCGGTTCAGTATAGCTTCG
Found at i:79758362 original size:40 final size:40
Alignment explanation
Indices: 79758318--79758422 Score: 131
Period size: 40 Copynumber: 2.6 Consensus size: 40
79758308 AGATCAAGTA
79758318 TTAGCGGCGTTTTTTAAAAAATGCCGCTATATG-TACACCT
1 TTAGCGGCGTTTTTTAAAAAATGCCGCTA-ATGCTACACCT
* * * * ** *
79758358 TTAGCGGCGCTTTTTAGAAAACGTCGCTAATGCTTGATCT
1 TTAGCGGCGTTTTTTAAAAAATGCCGCTAATGCTACACCT
79758398 TTAGCGGCGTTTTTTAAAAAATGCC
1 TTAGCGGCGTTTTTTAAAAAATGCC
79758423 ACAAAAAATG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
39 3 0.06
40 50 0.94
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (40 bp):
TTAGCGGCGTTTTTTAAAAAATGCCGCTAATGCTACACCT
Found at i:79758620 original size:21 final size:21
Alignment explanation
Indices: 79758574--79758625 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
79758564 TTAATTATCA
* *
79758574 TTATAGTTTAGGGTTTATGAT
1 TTATGGTTAAGGGTTTATGAT
*
79758595 ATATGGTTAAGGGTTTAATG-T
1 TTATGGTTAAGGGTTT-ATGAT
79758616 TTATGAGTTA
1 TTATG-GTTA
79758626 CTATTTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATGAT
Found at i:79758648 original size:7 final size:7
Alignment explanation
Indices: 79758638--79758683 Score: 56
Period size: 7 Copynumber: 6.4 Consensus size: 7
79758628 ATTTTAAGGT
79758638 TTATGGA
1 TTATGGA
*
79758645 TTATGGGT
1 TTAT-GGA
*
79758653 TTAGGGA
1 TTATGGA
*
79758660 TTATGGT
1 TTATGGA
79758667 TTATGGA
1 TTATGGA
79758674 TTATGGA
1 TTATGGA
79758681 TTA
1 TTA
79758684 ATGGTTAGGG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
7 27 0.84
8 5 0.16
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (7 bp):
TTATGGA
Found at i:79758655 original size:22 final size:21
Alignment explanation
Indices: 79758596--79758741 Score: 75
Period size: 22 Copynumber: 6.8 Consensus size: 21
79758586 GTTTATGATA
* *
79758596 TATGGTTAAGGGTTTAATGTT
1 TATGGTTATGGGTTTAAGGTT
**
79758617 TATGAGTTACT-ATTTTAAGGTT
1 TATG-GTTA-TGGGTTTAAGGTT
* *
79758639 TATGGATTATGGGTTTAGGGAT
1 TATGG-TTATGGGTTTAAGGTT
* *
79758661 TATGGTTTAT-GGATTATGGATT
1 TATGG-TTATGGGTTTAAGG-TT
* *
79758683 AATGGTTA-GGGTTTAAGTTT
1 TATGGTTATGGGTTTAAGGTT
* *
79758703 TAGAGGGTT-GGGGTTTAAGGTT
1 T--ATGGTTATGGGTTTAAGGTT
*
79758725 TATGTGTTAAGGGTTTA
1 TATG-GTTATGGGTTTA
79758742 TATTTTATTG
Statistics
Matches: 93, Mismatches: 21, Indels: 21
0.69 0.16 0.16
Matches are distributed among these distances:
20 4 0.04
21 25 0.27
22 64 0.69
ACGTcount: A:0.23, C:0.01, G:0.31, T:0.45
Consensus pattern (21 bp):
TATGGTTATGGGTTTAAGGTT
Found at i:79758669 original size:14 final size:14
Alignment explanation
Indices: 79758635--79758697 Score: 74
Period size: 14 Copynumber: 4.4 Consensus size: 14
79758625 ACTATTTTAA
79758635 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
79758649 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
79758664 GGTTTATGGATTAT
1 GGTTTATGGATTAT
* *
79758678 GGATTAATGG-TTAG
1 GG-TTTATGGATTAT
79758692 GGTTTA
1 GGTTTA
79758698 AGTTTTAGAG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 3 0.07
14 20 0.48
15 19 0.45
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:79759443 original size:14 final size:13
Alignment explanation
Indices: 79759424--79759474 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
79759414 TGATTTTTTT
79759424 ATTTATAAAAACTA
1 ATTTATAAAAA-TA
79759438 ATTTATAAAAAATA
1 ATTTAT-AAAAATA
*
79759452 A-TAATAATAAATA
1 ATTTATAA-AAATA
*
79759465 TTTTATAAAA
1 ATTTATAAAA
79759475 TTATTTAACT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.06
13 10 0.32
14 14 0.45
15 5 0.16
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTTATAAAAATA
Found at i:79762621 original size:27 final size:27
Alignment explanation
Indices: 79762583--79762638 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
79762573 GGTCTACATC
79762583 TTGCCTTGATGATTTCTTATTTTTGTA
1 TTGCCTTGATGATTTCTTATTTTTGTA
79762610 TTGCCTTGATGATTTCTTATTTTTGTA
1 TTGCCTTGATGATTTCTTATTTTTGTA
79762637 TT
1 TT
79762639 CTTTTGTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.14, C:0.11, G:0.14, T:0.61
Consensus pattern (27 bp):
TTGCCTTGATGATTTCTTATTTTTGTA
Found at i:79763398 original size:75 final size:75
Alignment explanation
Indices: 79763275--79763425 Score: 275
Period size: 75 Copynumber: 2.0 Consensus size: 75
79763265 TGCTTCCTTG
* *
79763275 TACTCATTCTCATCCTCTTTATATTTTCCGATGCTTTCTTCAGGTAGGATACTAAGAATTTCCTG
1 TACTCATCCTCATCCTCTTTATATTTTCCGATGCTTTCTTCAAGTAGGATACTAAGAATTTCCTG
79763340 TACTATTCTT
66 TACTATTCTT
*
79763350 TACTCATCCTCATCCTCTTTATATTTTCCTATGCTTTCTTCAAGTAGGATACTAAGAATTTCCTG
1 TACTCATCCTCATCCTCTTTATATTTTCCGATGCTTTCTTCAAGTAGGATACTAAGAATTTCCTG
79763415 TACTATTCTT
66 TACTATTCTT
79763425 T
1 T
79763426 CTGATTGCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.46
Consensus pattern (75 bp):
TACTCATCCTCATCCTCTTTATATTTTCCGATGCTTTCTTCAAGTAGGATACTAAGAATTTCCTG
TACTATTCTT
Found at i:79763738 original size:43 final size:43
Alignment explanation
Indices: 79763641--79763867 Score: 224
Period size: 43 Copynumber: 5.3 Consensus size: 43
79763631 AGTTTATATT
** * *
79763641 CTTTAGCGGCGTTTGTGAAAAAAGCGTCGCTAAAGGTCTAT--T
1 CTTTAGCGGCGTTTGCAAAAAAAGCGCCGCTAAAGGTC-ATGGC
* * * ** * *
79763683 ATATAGTGGCGTTTTTAAAAAAAGTGCCGCTAAAAGTCATGGC
1 CTTTAGCGGCGTTTGCAAAAAAAGCGCCGCTAAAGGTCATGGC
** * *
79763726 CTTTAGCGGCGTTTGCTCAAAAAGCGCCGCTAAAGGCCATAGC
1 CTTTAGCGGCGTTTGCAAAAAAAGCGCCGCTAAAGGTCATGGC
* ** * *
79763769 CTTTAACGATGTTTGCAAAAAAAGTGTCGCTAAAGGTCATGGC
1 CTTTAGCGGCGTTTGCAAAAAAAGCGCCGCTAAAGGTCATGGC
* **
79763812 CTTTAGCGGCATTTGCAAAAAAAGCGCCGCTAAAGGTCATGAT
1 CTTTAGCGGCGTTTGCAAAAAAAGCGCCGCTAAAGGTCATGGC
79763855 CTTTAGCGGCGTT
1 CTTTAGCGGCGTT
79763868 ACATATAGCG
Statistics
Matches: 145, Mismatches: 38, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
41 2 0.01
42 30 0.21
43 113 0.78
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGCAAAAAAAGCGCCGCTAAAGGTCATGGC
Found at i:79766804 original size:21 final size:21
Alignment explanation
Indices: 79766780--79766820 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
79766770 TACCTCAATC
* *
79766780 ACACGGGCATGTGTTTTAGCA
1 ACACGAGCATGTATTTTAGCA
*
79766801 ACACGATCATGTATTTTAGC
1 ACACGAGCATGTATTTTAGC
79766821 CAAAGGCATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (21 bp):
ACACGAGCATGTATTTTAGCA
Found at i:79768760 original size:42 final size:44
Alignment explanation
Indices: 79768668--79768817 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 44
79768658 CAATGTTGAC
* * * * *
79768668 GTCCCAGACGTGGTCTTACATGT-AACCATATA-TCGATGCCACT
1 GTCCCAGACATGGTCTTACACGTAAATCATA-AGACGATGCCAAT
* ** **
79768711 GTCCCAGACAGGGTCTTACACG-AAATCA-ATTACGATGCTGAT
1 GTCCCAGACATGGTCTTACACGTAAATCATAAGACGATGCCAAT
** *
79768753 GTCCCAGACATGGTCTTACTGGTAAATCATAAGACGATGCCAAC
1 GTCCCAGACATGGTCTTACACGTAAATCATAAGACGATGCCAAT
79768797 GTCCCAGACATGGTCTTACAC
1 GTCCCAGACATGGTCTTACAC
79768818 AATAACACAT
Statistics
Matches: 84, Mismatches: 19, Indels: 7
0.76 0.17 0.06
Matches are distributed among these distances:
42 27 0.32
43 29 0.35
44 28 0.33
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACACGTAAATCATAAGACGATGCCAAT
Found at i:79773689 original size:6 final size:6
Alignment explanation
Indices: 79773680--79773718 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
79773670 CCAAAAATAT
** *
79773680 AAATGG AAATAA AAATGA AAATGG AAATGG AAATGG AAA
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAA
79773719 CTTGCAATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (6 bp):
AAATGG
Found at i:79792614 original size:7 final size:7
Alignment explanation
Indices: 79792602--79792626 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
79792592 AGAGATGGAG
79792602 AGAATAA
1 AGAATAA
79792609 AGAATAA
1 AGAATAA
79792616 AGAATAA
1 AGAATAA
79792623 AGAA
1 AGAA
79792627 AATATGAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (7 bp):
AGAATAA
Found at i:79795707 original size:10 final size:10
Alignment explanation
Indices: 79795692--79795742 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
79795682 CAATTTTAGG
79795692 ATTTATTTTT
1 ATTTATTTTT
*
79795702 ATTTATCTTT
1 ATTTATTTTT
*
79795712 ATTTATCTTT
1 ATTTATTTTT
* *
79795722 AATTATTTGT
1 ATTTATTTTT
79795732 ATTTATCTTTT
1 ATTTAT-TTTT
79795743 GGAATTTAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
10 31 0.91
11 3 0.09
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.71
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:79795717 original size:20 final size:20
Alignment explanation
Indices: 79795692--79795741 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
79795682 CAATTTTAGG
* * *
79795692 ATTTATTTTTATTTATCTTT
1 ATTTATCTTTAATTATCTGT
*
79795712 ATTTATCTTTAATTATTTGT
1 ATTTATCTTTAATTATCTGT
79795732 ATTTATCTTT
1 ATTTATCTTT
79795742 TGGAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.70
Consensus pattern (20 bp):
ATTTATCTTTAATTATCTGT
Found at i:79796517 original size:38 final size:39
Alignment explanation
Indices: 79796474--79796551 Score: 124
Period size: 38 Copynumber: 2.0 Consensus size: 39
79796464 TCGAAATCCC
*
79796474 AATCAAAACTTTTAATTCTGTTTTTATT-TTT-TTTTCCA
1 AATCAAAACTTTTAATTCTATTTTT-TTATTTCTTTTCCA
79796512 AATCAAAACTTTTAATTCTATTTTTTTATTTCTTTTCCA
1 AATCAAAACTTTTAATTCTATTTTTTTATTTCTTTTCCA
79796551 A
1 A
79796552 GTACGCAGGT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
37 2 0.05
38 27 0.73
39 8 0.22
ACGTcount: A:0.28, C:0.14, G:0.01, T:0.56
Consensus pattern (39 bp):
AATCAAAACTTTTAATTCTATTTTTTTATTTCTTTTCCA
Found at i:79799526 original size:16 final size:16
Alignment explanation
Indices: 79799486--79799528 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 16
79799476 ATTTAGATGT
*
79799486 TTAAATATT-TTATTA
1 TTAAATATTCTTGTTA
79799501 TT-AA-ATTCTTGTTA
1 TTAAATATTCTTGTTA
79799515 TTAAATATTCTTGT
1 TTAAATATTCTTGT
79799529 AATTTGATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 3 0.12
14 9 0.38
15 4 0.17
16 8 0.33
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58
Consensus pattern (16 bp):
TTAAATATTCTTGTTA
Found at i:79809314 original size:22 final size:21
Alignment explanation
Indices: 79809289--79809330 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
79809279 GCCTAAATGG
79809289 TCACACGGAG-GTGTTGCCCCTC
1 TCACACGG-GCGTG-TGCCCCTC
79809311 TCACACGGGCGTGTGCCCCT
1 TCACACGGGCGTGTGCCCCT
79809331 GTGTTAAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.12, C:0.38, G:0.29, T:0.21
Consensus pattern (21 bp):
TCACACGGGCGTGTGCCCCTC
Found at i:79818905 original size:62 final size:62
Alignment explanation
Indices: 79818829--79818963 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 62
79818819 AGTACGTATG
79818829 TGGTACTTGAACTTTTTTTGGACCTAGTTGTTACTTAAACTAATACTATTAGTTTGTGTTGACA
1 TGGTA-TTG-ACTTTTTTTGGACCTAGTTGTTACTTAAACTAATACTATTAGTTTGTGTTGACA
79818893 TGGTATTGACTTTTTTTGGACCTAGTTGTTACTTAAACTAATACTATTAGTTTGTGTTGACA
1 TGGTATTGACTTTTTTTGGACCTAGTTGTTACTTAAACTAATACTATTAGTTTGTGTTGACA
79818955 TGGTATTGA
1 TGGTATTGA
79818964 TAGTCAATCT
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
62 63 0.89
63 3 0.04
64 5 0.07
ACGTcount: A:0.24, C:0.11, G:0.19, T:0.46
Consensus pattern (62 bp):
TGGTATTGACTTTTTTTGGACCTAGTTGTTACTTAAACTAATACTATTAGTTTGTGTTGACA
Found at i:79819730 original size:27 final size:27
Alignment explanation
Indices: 79819684--79819736 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
79819674 CAGTAACAGT
*
79819684 TGGGCCTAACCCATTAACAGAATCAGG
1 TGGGCCTAACCCAGTAACAGAATCAGG
79819711 TGGGCCTAAGCCCAGT-ACAGAATCAG
1 TGGGCCTAA-CCCAGTAACAGAATCAG
79819737 TATTAGAAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.32, C:0.26, G:0.25, T:0.17
Consensus pattern (27 bp):
TGGGCCTAACCCAGTAACAGAATCAGG
Found at i:79819940 original size:22 final size:22
Alignment explanation
Indices: 79819876--79819941 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
79819866 GCACTAAGTC
79819876 AACAGGACGGCTCAACGCCGTA
1 AACAGGACGGCTCAACGCCGTA
* * * * *
79819898 GACAAGACGACTTAACACCGTA
1 AACAGGACGGCTCAACGCCGTA
*
79819920 AACAGGATGGCTCAACGCCGTA
1 AACAGGACGGCTCAACGCCGTA
79819942 GGTAGGACGA
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.35, C:0.29, G:0.24, T:0.12
Consensus pattern (22 bp):
AACAGGACGGCTCAACGCCGTA
Found at i:79819963 original size:44 final size:44
Alignment explanation
Indices: 79819876--79819965 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
79819866 GCACTAAGTC
*
79819876 AACAGGACGGCTCAACGCCGTAGACAAGACGACTTAACACCGTA
1 AACAGGACGGCTCAACGCCGTAGACAAGACGACTAAACACCGTA
* ** * **
79819920 AACAGGATGGCTCAACGCCGTAGGTAGGACGACTAAAGGCCGTA
1 AACAGGACGGCTCAACGCCGTAGACAAGACGACTAAACACCGTA
79819964 AA
1 AA
79819966 TATCGCAGCA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.36, C:0.26, G:0.27, T:0.12
Consensus pattern (44 bp):
AACAGGACGGCTCAACGCCGTAGACAAGACGACTAAACACCGTA
Found at i:79825176 original size:17 final size:18
Alignment explanation
Indices: 79825142--79825187 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
79825132 CCGTTATGTC
79825142 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
79825157 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
79825174 CGCGACCGCGACCG
1 CGCGACCGCGACCG
79825188 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:79837558 original size:43 final size:43
Alignment explanation
Indices: 79837482--79837597 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
79837472 GATGGTGAAT
* * * * * *
79837482 AATATTATCGGGCTTCGGGCATAGCAAGTTATAATGCCAGT-A
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATACCAGTGA
* *
79837524 AGATAATATCGGGCTTCGAGCCTAGTAGGCTATAATACCGGTGA
1 A-ATAATATCGGGCTTCGAGCCTAGCAGGCTATAATACCAGTGA
* * *
79837568 AATGATATCGGGCTTCAAGTCTAGCAGGCT
1 AATAATATCGGGCTTCGAGCCTAGCAGGCT
79837598 TCGTGCCGGT
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 1 0.02
43 57 0.95
44 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (43 bp):
AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATACCAGTGA
Found at i:79839496 original size:55 final size:54
Alignment explanation
Indices: 79839356--79839560 Score: 245
Period size: 55 Copynumber: 3.8 Consensus size: 54
79839346 GGGTGATACA
* * * *
79839356 TTACCATTTCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT-GAAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
* * * *
79839409 TGACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTATC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AAC
* * *
79839464 TTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGA-AACC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA-C
*
79839518 TTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 TTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
79839561 AAACCCTAAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 40 0.31
54 8 0.06
55 76 0.59
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
Found at i:79844159 original size:93 final size:92
Alignment explanation
Indices: 79844057--79844305 Score: 252
Period size: 93 Copynumber: 2.7 Consensus size: 92
79844047 CTGCTTATAT
* *
79844057 TTATTTGATCTGACAGTTAAACTGT-AATATACCGGTATAGCAATTTTACCACATTGCACTATAC
1 TTATCTGATCTGACAGTTAAACTGTAAAT-TACCGGTATAGCAATTTTACCGCATTGCACTATAC
*
79844121 AGCACATACGTTAGTTATGCTACGTACCA
65 A-CACATACGTTAGCTATGCTACGTACCA
* * * * * * ** * *
79844150 TTATCTGATCTGGCCGTTGATCTGTAAATTACCAGTATAGCAGTTTTACCGCACCGCATTGTATC
1 TTATCTGATCTGACAGTTAAACTGTAAATTACCGGTATAGCAATTTTACCGCATTGCACTATA-C
* * *
79844215 ATACGTACGTTAGCTATGTTACGTACCA
65 ACACATACGTTAGCTATGCTACGTACCA
* * * * *
79844243 TTATCTGATCT-AGCAATTAAACTGCAAATTACTGGTAAAGC-AGTTTACCGCATTGCACTATAC
1 TTATCTGATCTGA-CAGTTAAACTGTAAATTACCGGTATAGCAATTTTACCGCATTGCACTATAC
79844306 CGTATGTACG
Statistics
Matches: 122, Mismatches: 31, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
91 1 0.01
92 15 0.12
93 101 0.83
94 5 0.04
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (92 bp):
TTATCTGATCTGACAGTTAAACTGTAAATTACCGGTATAGCAATTTTACCGCATTGCACTATACA
CACATACGTTAGCTATGCTACGTACCA
Found at i:79846880 original size:13 final size:13
Alignment explanation
Indices: 79846862--79846889 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79846852 TGATTTTGAA
79846862 TTGAACAACACCC
1 TTGAACAACACCC
79846875 TTGAACAACACCC
1 TTGAACAACACCC
79846888 TT
1 TT
79846890 ATAGTCCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.36, G:0.07, T:0.21
Consensus pattern (13 bp):
TTGAACAACACCC
Found at i:79854585 original size:3 final size:3
Alignment explanation
Indices: 79854577--79854610 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
79854567 TTTTTGTGTG
79854577 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
79854611 TTTGTTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:79858338 original size:27 final size:27
Alignment explanation
Indices: 79858308--79858464 Score: 129
Period size: 27 Copynumber: 5.8 Consensus size: 27
79858298 TAATTTGTAA
** *
79858308 AATTACCAAAGTACCCTCGATTTACAG
1 AATTACCAATTTACCCTCGATTTATAG
* * *
79858335 AATTACC-GTTTCACCTTCGATTTATAA
1 AATTACCAATTT-ACCCTCGATTTATAG
*
79858362 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCAATTTACCCTCGATTTATAG
*** * * *
79858389 AATTACTGTTTTACCATCGATTTACAA
1 AATTACCAATTTACCCTCGATTTATAG
* * *
79858416 AATTACCATTTTACCCTC-ACTTTACAA
1 AATTACCAATTTACCCTCGA-TTTATAG
*
79858443 AATTACCATTTTACCCTCGATT
1 AATTACCAATTTACCCTCGATT
79858465 ATGAAATTAT
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.02
27 103 0.94
28 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (27 bp):
AATTACCAATTTACCCTCGATTTATAG
Found at i:79858363 original size:54 final size:54
Alignment explanation
Indices: 79858300--79858473 Score: 208
Period size: 54 Copynumber: 3.2 Consensus size: 54
79858290 AATGTCTTTA
* *** * *
79858300 ATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTCACCTTCG
1 ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCATCG
* *
79858354 ATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCATCG
1 ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCATCG
* * * *
79858408 ATTTACAAAATTACCATTTTACCCTC-ACTTTACAAAATTACCATTTTACCCTCG
1 ATTTATAAAATTACCATTTTACCCTCGA-TTTACAGAATTACCGTTTTACCATCG
*
79858462 A-TTATGAAATTA
1 ATTTATAAAATTA
79858474 TTGAAATAAC
Statistics
Matches: 103, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
53 10 0.10
54 93 0.90
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (54 bp):
ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCATCG
Found at i:79858651 original size:27 final size:27
Alignment explanation
Indices: 79858492--79858700 Score: 113
Period size: 27 Copynumber: 7.8 Consensus size: 27
79858482 ACCCCAGTTG
* *
79858492 TAAAATTACCAAAGTACCCC-GGTTTA
1 TAAAATTACCAAAATACCCCTAGTTTA
* * * *
79858518 TAAAATTACCCAAATA-TCCTCAATTTG
1 TAAAATTACCAAAATACCCCT-AGTTTA
* *
79858545 TAAAATTACCGAAATA-CCCTCAGTTTG
1 TAAAATTACCAAAATACCCCT-AGTTTA
* ** * * **
79858572 CAAAATTACTGAAATA-CCTTCGATCAA
1 TAAAATTACCAAAATACCCCTAG-TTTA
* *
79858599 TAAAATTACAAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTA
* * *
79858626 TAAAATTACCAAAATGCCCTTGGTTTA
1 TAAAATTACCAAAATACCCCTAGTTTA
* * **
79858653 CAAAATTACCGAAATACCCCTA-TAGCA
1 TAAAATTACCAAAATACCCCTAGT-TTA
* *
79858680 TAGAATTACCAGAATACCCCT
1 TAAAATTACCAAAATACCCCT
79858701 GTAGGTTAGA
Statistics
Matches: 138, Mismatches: 40, Indels: 9
0.74 0.21 0.05
Matches are distributed among these distances:
25 2 0.01
26 16 0.12
27 116 0.84
28 4 0.03
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAGTTTA
Found at i:79858710 original size:27 final size:27
Alignment explanation
Indices: 79858656--79859202 Score: 718
Period size: 27 Copynumber: 20.6 Consensus size: 27
79858646 TGGTTTACAA
* **
79858656 AATTACCGAAATACCCCTATAGCATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79858683 AATTACC-AGAATACCCCTGTAGGTTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
79858710 AATTATCGAATTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79858737 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79858764 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
79858791 AATTATCGTAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79858818 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79858845 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79858872 AA-T-------TACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
79858891 AATTATCGCAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79858918 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79858945 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79858972 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
79858999 AATTATCGCAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79859026 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79859053 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
79859080 AATTATCGCAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
79859107 AATTTCTGAAATACCCCTTTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
79859134 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
79859161 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
79859188 AATTACC-AAGATACC
1 AATTACCGAA-ATACC
79859203 TTTGGGGTAA
Statistics
Matches: 463, Mismatches: 46, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
19 18 0.04
20 1 0.00
26 4 0.01
27 439 0.95
28 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:79858880 original size:19 final size:19
Alignment explanation
Indices: 79858856--79858895 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
79858846 ATTATCGAAA
79858856 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTAGGGTAGAAT
79858875 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTAGGGTAGAAT
79858894 TA
1 TA
79858896 TCGCAATAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (19 bp):
TACCCCTGTAGGGTAGAAT
Found at i:79859678 original size:22 final size:22
Alignment explanation
Indices: 79859648--79859709 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
79859638 AAGCCTTCTG
* *
79859648 ATTATGGCTTTGTGTCAACCTA
1 ATTATGGCTCTGTGCCAACCTA
79859670 CA-TATGGCTCTGTGCCAACCTA
1 -ATTATGGCTCTGTGCCAACCTA
* *
79859692 ATTATGGCTGTGTACCAA
1 ATTATGGCTCTGTGCCAA
79859710 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (22 bp):
ATTATGGCTCTGTGCCAACCTA
Found at i:79859925 original size:54 final size:53
Alignment explanation
Indices: 79859867--79859968 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
79859857 ATTCTGTTAA
* * * *
79859867 GTGGCTTTGCCACATTATCTATTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCAC-AATATCTGTTCTG
* * *
79859921 GTGGCTCTGCCACAATATCTGTATCTGGTGACTGTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTG
79859969 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:79859968 original size:27 final size:26
Alignment explanation
Indices: 79859867--79859968 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
79859857 ATTCTGTTAA
* * *
79859867 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTATGCCACAATATCT-GTTCTG
79859894 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
*
79859921 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGT-TCTG
* * *
79859948 GTGACTGTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
79859969 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.14
27 51 0.77
28 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:79860110 original size:6 final size:6
Alignment explanation
Indices: 79860100--79860286 Score: 152
Period size: 6 Copynumber: 30.8 Consensus size: 6
79860090 TTGCATTCAC
* * * *
79860100 ATTCTG GTTCTG ATTCTG -TTACGTA ATTCTG ATTCTG ATCCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
79860149 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTTTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
** * *
79860197 ATTCTG TAACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG -ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
79860246 ATTCTA ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
79860287 AATGTTTCTT
Statistics
Matches: 143, Mismatches: 24, Indels: 28
0.73 0.12 0.14
Matches are distributed among these distances:
5 11 0.08
6 118 0.83
7 11 0.08
8 3 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:79860248 original size:85 final size:85
Alignment explanation
Indices: 79860100--79860286 Score: 302
Period size: 85 Copynumber: 2.2 Consensus size: 85
79860090 TTGCATTCAC
* * *
79860100 ATTCTGGTTCTGATTCTGTTACGTAATTCTGATTCTGATCCTAATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTAACCTAATTCTGATTCTGATCCTAATTCTGTTACTAATACTGATTC
*
79860165 TGATTCTGATTCTGTTACTG
66 TAATTCTGATTCTGTTACTG
* * * *
79860185 ATTTTGATTCTGATTCTGTAACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTAACCTAATTCTGATTCTGATCCTAATTCTGTTACTAATACTGATTC
79860250 TAATTCTGATTCTGTTACTG
66 TAATTCTGATTCTGTTACTG
79860270 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
79860287 AATGTTTCTT
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTAACCTAATTCTGATTCTGATCCTAATTCTGTTACTAATACTGATTC
TAATTCTGATTCTGTTACTG
Found at i:79860264 original size:30 final size:30
Alignment explanation
Indices: 79860100--79860286 Score: 226
Period size: 30 Copynumber: 6.4 Consensus size: 30
79860090 TTGCATTCAC
*
79860100 ATTCTGGTTCTGATTCTGTTACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
* * *
79860131 ATTCTGATCCTAATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
79860161 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
79860185 ATTTTGATTCTGATTCTGTAACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
79860216 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
79860246 ATTCTAATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
79860276 ATTCTGATTCT
1 ATTCTGATTCT
79860287 AATGTTTCTT
Statistics
Matches: 134, Mismatches: 13, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
24 20 0.15
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 66 0.49
31 42 0.31
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:79861938 original size:40 final size:40
Alignment explanation
Indices: 79861901--79861991 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
79861891 GCTACTCGTT
*
79861901 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
79861941 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
79861981 CCAATGCCTTC
1 CAAATGCCTTC
79861992 AGATCTTAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 45 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:79862006 original size:40 final size:40
Alignment explanation
Indices: 79861901--79862046 Score: 127
Period size: 40 Copynumber: 3.6 Consensus size: 40
79861891 GCTACTCGTT
* * *
79861901 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAACCCGGATT-TAGTAACTCGCA
*
79861941 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
79861981 CCAATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGAGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
79862022 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGAGACTTAACCCGGA
79862047 CATCATTCGA
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.02
40 76 0.85
41 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
Found at i:79863239 original size:56 final size:56
Alignment explanation
Indices: 79863172--79863347 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
79863162 TATTAGTTTA
79863172 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
79863228 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
79863284 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
79863340 TTGCCCAT
1 TTGCCCAT
79863348 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:79868705 original size:13 final size:13
Alignment explanation
Indices: 79868687--79868713 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79868677 AATCGCGCGG
79868687 TGAATCTCGGATC
1 TGAATCTCGGATC
79868700 TGAATCTCGGATC
1 TGAATCTCGGATC
79868713 T
1 T
79868714 CTATCCGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (13 bp):
TGAATCTCGGATC
Found at i:79870438 original size:56 final size:56
Alignment explanation
Indices: 79870371--79870546 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
79870361 TATTAGTTTA
79870371 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
79870427 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
79870483 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
79870539 TTGCCCAT
1 TTGCCCAT
79870547 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:79872610 original size:27 final size:27
Alignment explanation
Indices: 79872591--79872763 Score: 249
Period size: 27 Copynumber: 6.4 Consensus size: 27
79872581 ATTACCAAAG
*
79872591 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
79872618 CACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
79872645 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
**
79872672 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
79872699 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
79872726 TACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTACAGAATTACCATTT
79872753 TACCCTCGATT
1 TACCCTCGATT
79872764 ATGAAATTAC
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:79872681 original size:81 final size:81
Alignment explanation
Indices: 79872591--79872763 Score: 285
Period size: 81 Copynumber: 2.1 Consensus size: 81
79872581 ATTACCAAAG
79872591 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTC-GAT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAG-T
* *
79872655 TTATAGAATTACCATTT
65 TTACAAAATTACCATTT
* * *
79872672 TACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTACCATTTTACCCTCAGTT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
79872737 TACAAAATTACCATTT
66 TACAAAATTACCATTT
79872753 TACCCTCGATT
1 TACCCTCGATT
79872764 ATGAAATTAC
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
81 85 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
TACAAAATTACCATTT
Found at i:79872847 original size:27 final size:27
Alignment explanation
Indices: 79872767--79872944 Score: 112
Period size: 27 Copynumber: 6.7 Consensus size: 27
79872757 CTCGATTATG
** *
79872767 AAATTACTGAAATACCCTC-AGTTGTA
1 AAATTACCCAAATACCCTCAATTTGTA
** *
79872793 AAATTA-CCAAAGTACCC-CGGTTTATA
1 AAATTACCCAAA-TACCCTCAATTTGTA
*
79872819 AAATTACCCAAATATCCTCAATTTGTA
1 AAATTACCCAAATACCCTCAATTTGTA
* * *
79872846 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCCAAATACCCTCAATTTGTA
** * * ***
79872873 AAATTACTGAAATAACCTCGATCAATA
1 AAATTACCCAAATACCCTCAATTTGTA
* **
79872900 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCCAAATACCCTC-AATTTGTA
* *
79872927 AAATTACCAAAATGCCCT
1 AAATTACCCAAATACCCT
79872945 TGGTTTACAA
Statistics
Matches: 117, Mismatches: 29, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
25 4 0.03
26 26 0.22
27 87 0.74
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACCCAAATACCCTCAATTTGTA
Found at i:79872926 original size:81 final size:80
Alignment explanation
Indices: 79872767--79872967 Score: 201
Period size: 81 Copynumber: 2.5 Consensus size: 80
79872757 CTCGATTATG
* * * * ** *
79872767 AAATTACTGAAATACCCTCAG-TTGTAAAATTACCAAAGT-ACCCCGGTTTATAAAATTACCCAA
1 AAATTACCGAAATACCCTCAGTTTGCAAAATTACGAAA-TAACCCCGATCAATAAAATTACCAAA
*
79872830 ATATCCTCAATTTGTA
65 ATACCCTCAATTTGTA
*
79872846 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATAACCTCGATCAATAAAATTACCAAA
1 AAATTACCGAAATACCCTCAGTTTGCAAAATTAC-GAAATAACCCCGATCAATAAAATTACCAAA
**
79872911 ATACCC-CTGGTTTGTA
65 ATACCCTC-AATTTGTA
* * ** *
79872927 AAATTACCAAAATGCCCTTGGTTTACAAAATTACCGAAATA
1 AAATTACCGAAATACCCTCAGTTTGCAAAATTA-CGAAATA
79872968 TCCCTGTAGC
Statistics
Matches: 101, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
79 20 0.20
80 13 0.13
81 67 0.66
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.28
Consensus pattern (80 bp):
AAATTACCGAAATACCCTCAGTTTGCAAAATTACGAAATAACCCCGATCAATAAAATTACCAAAA
TACCCTCAATTTGTA
Found at i:79872948 original size:27 final size:27
Alignment explanation
Indices: 79872791--79872973 Score: 113
Period size: 27 Copynumber: 6.8 Consensus size: 27
79872781 CCCTCAGTTG
*
79872791 TAAAATTACCAAAGTACCCC-GGTTTA
1 TAAAATTACCAAAATACCCCTGGTTTA
* * ** *
79872817 TAAAATTACCCAAATA-TCCTCAATTTG
1 TAAAATTACCAAAATACCCCT-GGTTTA
* * *
79872844 TAAAATTACCGAAATA-CCCTCAGTTTG
1 TAAAATTACCAAAATACCCCT-GGTTTA
* ** * * **
79872871 CAAAATTACTGAAATA-ACCTCGATCAA
1 TAAAATTACCAAAATACCCCT-GGTTTA
*
79872898 TAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTA
* *
79872925 TAAAATTACCAAAATGCCCTTGGTTTA
1 TAAAATTACCAAAATACCCCTGGTTTA
* * *
79872952 CAAAATTACCGAAATATCCCTG
1 TAAAATTACCAAAATACCCCTG
79872974 TAGCGTAGAA
Statistics
Matches: 121, Mismatches: 33, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
25 2 0.02
26 14 0.12
27 102 0.84
28 3 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGGTTTA
Found at i:79872985 original size:27 final size:27
Alignment explanation
Indices: 79872955--79873546 Score: 781
Period size: 27 Copynumber: 22.3 Consensus size: 27
79872945 TGGTTTACAA
* *
79872955 AATTACCGAAATATCCCTGTAGCGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79872982 AATTACCGGAATACCCCTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79873009 AATTATCGAATTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
79873036 AATAACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
79873063 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79873090 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
79873117 AATTATCGTAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79873144 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79873171 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79873198 AA-T-------TACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79873217 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79873244 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79873271 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79873298 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79873325 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79873352 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79873379 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
79873406 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79873433 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
79873460 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
79873487 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
79873514 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
79873540 AATTACC
1 AATTACC
79873547 ATTTTGCCCT
Statistics
Matches: 504, Mismatches: 52, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
19 18 0.04
20 1 0.00
26 19 0.04
27 466 0.92
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:79873206 original size:19 final size:19
Alignment explanation
Indices: 79873182--79873221 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
79873172 ATTATCGCAA
79873182 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTAGGGTAGAAT
79873201 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTAGGGTAGAAT
79873220 TA
1 TA
79873222 TCGCAATACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (19 bp):
TACCCCTGTAGGGTAGAAT
Found at i:79874024 original size:22 final size:23
Alignment explanation
Indices: 79873975--79874036 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 23
79873965 AAGCCTTCTG
* *
79873975 ATTATGGCTTTGTGTCAACATAC
1 ATTATGGCTCTGTGCCAACATAC
*
79873998 A-TATGGCTCTGTGCCAACCTA-
1 ATTATGGCTCTGTGCCAACATAC
* *
79874019 ATTATGGTTGTGTGCCAA
1 ATTATGGCTCTGTGCCAA
79874037 ACGTATTTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (23 bp):
ATTATGGCTCTGTGCCAACATAC
Found at i:79874274 original size:27 final size:26
Alignment explanation
Indices: 79874194--79874295 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 26
79874184 ATTCTGTTAA
* * * *
79874194 GTGGCTTTGCCACATTATCTATTTCTA
1 GTGGCTCTGCCACAATATCT-GTTCTG
* * *
79874221 GTGGCTATACCATAAATATCTGTTCTG
1 GTGGCTCTGCCA-CAATATCTGTTCTG
79874248 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
79874275 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
79874296 ATAACTGAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 9 0.15
27 47 0.76
28 6 0.10
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:79874471 original size:6 final size:6
Alignment explanation
Indices: 79874452--79874607 Score: 126
Period size: 6 Copynumber: 25.8 Consensus size: 6
79874442 CTGTCACGTA
* * * *
79874452 ATTCTG ATTTTG ATTCTG ATTCTG -TTACTA ATACTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
79874500 ATTTTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
79874549 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG -TTACTG GTTCTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATT-CTG ATTCTG
79874597 ATTCTG ATTCT
1 ATTCTG ATTCT
79874608 AATGTTTCTT
Statistics
Matches: 120, Mismatches: 17, Indels: 26
0.74 0.10 0.16
Matches are distributed among these distances:
5 10 0.08
6 100 0.83
7 8 0.07
8 2 0.02
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:79874491 original size:30 final size:30
Alignment explanation
Indices: 79874427--79874584 Score: 175
Period size: 31 Copynumber: 5.4 Consensus size: 30
79874417 TTGCATTCAC
* * *
79874427 ATTCTGGTTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATACTG
*
79874458 ATTTTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
79874488 ATTTTGATTCTGA-T-T-TT-GT--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
79874512 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
79874543 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
79874573 ATTCTGATTCTG
1 ATTCTGATTCTG
79874585 TTACTGGTTC
Statistics
Matches: 108, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
24 17 0.16
25 1 0.01
26 2 0.02
27 3 0.03
28 1 0.01
29 2 0.02
30 39 0.36
31 43 0.40
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:79874575 original size:85 final size:84
Alignment explanation
Indices: 79874427--79874607 Score: 274
Period size: 85 Copynumber: 2.1 Consensus size: 84
79874417 TTGCATTCAC
* * * *
79874427 ATTCTGGTTCTGATTCTGTCACGTAATTCTGATTTTGATTCTGATTCTGTTACTAATACTGATTT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
*
79874492 TGATTCTGATT-TTGTTACTG
66 TGATTCTG-TTATGGTT-CTG
*
79874512 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
79874577 TGATTCTGTTACTGGTTCTG
66 TGATTCTGTTA-TGGTTCTG
79874597 ATTCTGATTCT
1 ATTCTGATTCT
79874608 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
84 2 0.02
85 82 0.93
86 4 0.05
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (84 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGTTATGGTTCTG
Found at i:79876898 original size:15 final size:17
Alignment explanation
Indices: 79876868--79876899 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
79876858 TTGATACTTG
79876868 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
79876885 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
79876900 AATTATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:79883635 original size:5 final size:5
Alignment explanation
Indices: 79883625--79883681 Score: 53
Period size: 5 Copynumber: 10.6 Consensus size: 5
79883615 CCTCCTATTT
*
79883625 TTTTA TTTTA TTTTA -TTTA TTTTA TTCTTA TTTTTC TTTTGA TTTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA -TTTTA TTTT-A -TTTTA
79883673 TTTTCA TTT
1 TTTT-A TTT
79883682 CAATTTTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
4 4 0.09
5 24 0.55
6 10 0.23
7 6 0.14
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:79883645 original size:14 final size:14
Alignment explanation
Indices: 79883620--79883657 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
79883610 TAAATCCTCC
79883620 TATTTT-TTTATTT
1 TATTTTATTTATTT
79883633 TATTTTATTTATTT
1 TATTTTATTTATTT
79883647 TATTCTTATTT
1 TATT-TTATTT
79883658 TTCTTTTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 6 0.26
14 11 0.48
15 6 0.26
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (14 bp):
TATTTTATTTATTT
Found at i:79886545 original size:13 final size:13
Alignment explanation
Indices: 79886529--79886561 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
79886519 TTTAATTAAA
*
79886529 TTAGTTAATTAGT
1 TTAGATAATTAGT
79886542 TTAGATAATTAGT
1 TTAGATAATTAGT
79886555 TTA-ATAA
1 TTAGATAA
79886562 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:79904632 original size:19 final size:20
Alignment explanation
Indices: 79904610--79904648 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
79904600 TCAAGAAGTC
*
79904610 ATCAATGAC-ACTTCAAAAA
1 ATCAATAACAACTTCAAAAA
*
79904629 ATCATTAACAACTTCAAAAA
1 ATCAATAACAACTTCAAAAA
79904649 TTAAGGCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.54, C:0.21, G:0.03, T:0.23
Consensus pattern (20 bp):
ATCAATAACAACTTCAAAAA
Found at i:79922430 original size:49 final size:47
Alignment explanation
Indices: 79922315--79922486 Score: 141
Period size: 47 Copynumber: 3.6 Consensus size: 47
79922305 TGTGTTAGTG
** * * * *
79922315 TAAGACCATGTCAGGGACATGGCATC-AGCATGGATATGTAAGAGCTAGTG
1 TAAGACCATGTTTGGGACATGGCATCGA-C-TCGATA-G-ATGAGCCAGTA
* * * *
79922365 TAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTAGAT-AGTCAGTA
1 TAAGACCATGTTTGGGACATGGCATC-GACTCGA--TAGATGAGCCAGTA
* * * *
79922414 TATGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCCAGTG
1 TAAGACCATGTTTGGGACATGGCATCGACTCGATAGATGAGCCAGTA
79922461 TAAGACCATGTTTGGGACATGGCATC
1 TAAGACCATGTTTGGGACATGGCATC
79922487 AGCATTATAC
Statistics
Matches: 100, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
46 4 0.04
47 31 0.31
48 5 0.05
49 28 0.28
50 28 0.28
51 2 0.02
52 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
TAAGACCATGTTTGGGACATGGCATCGACTCGATAGATGAGCCAGTA
Found at i:79922474 original size:47 final size:47
Alignment explanation
Indices: 79922219--79922486 Score: 178
Period size: 46 Copynumber: 5.7 Consensus size: 47
79922209 TATTTGTGTT
*
79922219 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGA--GATGTAAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGATGGATG--AG
* * * *
79922265 CCAGTGTAAGA-CATGTCTAGGACAT-GTATCGGCTACGA--GATGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGATGGATGAG
** * * * *
79922309 TTAGTGTAAGACCATGTCAGGGACATGGCATC-AGCATGGATATGTAAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TCG--ATGGATGAG
* * * *
79922359 CTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTAGAT-AG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGA--TGGATGAG
* * * * *
79922408 TCAGTATATGACCATGTTTGGGACATGGCATCGACTTGATGGATGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAG
*
79922455 CCAGTGTAAGACCATGTTTGGGACATGGCATC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC
79922487 AGCATTATAC
Statistics
Matches: 174, Mismatches: 34, Indels: 27
0.74 0.14 0.11
Matches are distributed among these distances:
44 10 0.06
45 15 0.09
46 45 0.26
47 32 0.18
48 7 0.04
49 28 0.16
50 36 0.21
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAG
Found at i:79927009 original size:17 final size:18
Alignment explanation
Indices: 79926968--79927011 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
79926958 AGTTATTAGG
*
79926968 CCACATGTCCGTATGGAC
1 CCACATGCCCGTATGGAC
* *
79926986 TCACATGCCCGTGTGG-C
1 CCACATGCCCGTATGGAC
79927003 CCACATGCC
1 CCACATGCC
79927012 TAGATTGGCC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.18, C:0.39, G:0.23, T:0.20
Consensus pattern (18 bp):
CCACATGCCCGTATGGAC
Found at i:79927541 original size:22 final size:20
Alignment explanation
Indices: 79927515--79927562 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
79927505 AATAAAAAGG
*
79927515 AAACAATGTGGAAGATAGGGAA
1 AAACAACGT-GAA-ATAGGGAA
*
79927537 AAACAACGTGAAATTGGGAA
1 AAACAACGTGAAATAGGGAA
79927557 AAACAA
1 AAACAA
79927563 AAATTTGGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 13 0.54
21 3 0.12
22 8 0.33
ACGTcount: A:0.54, C:0.08, G:0.25, T:0.12
Consensus pattern (20 bp):
AAACAACGTGAAATAGGGAA
Found at i:79932908 original size:17 final size:18
Alignment explanation
Indices: 79932886--79932929 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
79932876 ATCTCGTTCG
*
79932886 TATTTTTAG--AAAACATT
1 TATTTTTAGTAAAAAC-TA
79932903 TATTTTTAGTAAAAACTA
1 TATTTTTAGTAAAAACTA
79932921 TATTTTTAG
1 TATTTTTAG
79932930 CCAATCATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 9 0.38
18 10 0.42
19 5 0.21
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.50
Consensus pattern (18 bp):
TATTTTTAGTAAAAACTA
Found at i:79937298 original size:35 final size:35
Alignment explanation
Indices: 79937247--79937323 Score: 136
Period size: 35 Copynumber: 2.2 Consensus size: 35
79937237 TTTAGCCTCC
*
79937247 AAAAGTTCATACCACATCCGTCCTGAACTATACAT
1 AAAACTTCATACCACATCCGTCCTGAACTATACAT
*
79937282 AAAACTTCATACCACATTCGTCCTGAACTATACAT
1 AAAACTTCATACCACATCCGTCCTGAACTATACAT
79937317 AAAACTT
1 AAAACTT
79937324 ACTCATTCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.39, C:0.27, G:0.06, T:0.27
Consensus pattern (35 bp):
AAAACTTCATACCACATCCGTCCTGAACTATACAT
Found at i:79939020 original size:17 final size:17
Alignment explanation
Indices: 79938998--79939036 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
79938988 CAATGATCTC
79938998 AAAAACGTAAAAATTAT
1 AAAAACGTAAAAATTAT
79939015 AAAAACGTAAAAATTAT
1 AAAAACGTAAAAATTAT
79939032 AAAAA
1 AAAAA
79939037 AACCGAGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAAACGTAAAAATTAT
Found at i:79940014 original size:34 final size:33
Alignment explanation
Indices: 79939970--79940039 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 33
79939960 TTATTTTCAT
79939970 AATGCACTGAAAGTTCAAAAATAATGCATCGAAA
1 AATGCACTGAAAGTTCAAAAATAATGCA-CGAAA
* *
79940004 AATGCTCTGAAAGTTCAAAAATAATGCACTAAA
1 AATGCACTGAAAGTTCAAAAATAATGCACGAAA
79940037 AAT
1 AAT
79940040 CTAATCGACC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 7 0.21
34 27 0.79
ACGTcount: A:0.50, C:0.14, G:0.13, T:0.23
Consensus pattern (33 bp):
AATGCACTGAAAGTTCAAAAATAATGCACGAAA
Found at i:79940381 original size:20 final size:22
Alignment explanation
Indices: 79940352--79940396 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
79940342 ACAAAACCAT
* *
79940352 AAACCTAA-CCCT-ACTTTAAA
1 AAACCAAACCCCTAACTCTAAA
79940372 AAACCAAACCCCTAACTCTAAA
1 AAACCAAACCCCTAACTCTAAA
79940394 AAA
1 AAA
79940397 AAGAATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 4 0.19
22 10 0.48
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (22 bp):
AAACCAAACCCCTAACTCTAAA
Found at i:79941122 original size:18 final size:18
Alignment explanation
Indices: 79941099--79941134 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
79941089 GTTAAATAGA
*
79941099 CACAAATTTTCCAATTTT
1 CACAAAATTTCCAATTTT
79941117 CACAAAATTTCCAATTTT
1 CACAAAATTTCCAATTTT
79941135 TATTGCTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (18 bp):
CACAAAATTTCCAATTTT
Found at i:79945896 original size:23 final size:21
Alignment explanation
Indices: 79945870--79945910 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
79945860 AATTAAATTA
79945870 TATATATTATGATTTTAGTAT
1 TATATATTATGATTTTAGTAT
79945891 TATATATTATGATTTTAGTA
1 TATATATTATGATTTTAGTA
79945911 AATTCATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (21 bp):
TATATATTATGATTTTAGTAT
Found at i:79946152 original size:120 final size:117
Alignment explanation
Indices: 79945885--79946192 Score: 548
Period size: 120 Copynumber: 2.6 Consensus size: 117
79945875 ATTATGATTT
79945885 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAA-AATTTTATTAA
1 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
*
79945949 ATTATATATTTTTATCTAATTATATTTAATAATAATTTTAAATTATATTTTG
66 ATTATATATTTTTATCTAATTATATTTAATAATAATTTTAAATTATATTTTA
79946001 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
79946066 ATTATATATTTTTAT-TAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
66 ATTATATATTTTTATCT-AATTATATTTAATAAT-A--ATTTTAAATTATATTTTA
*
79946121 TATTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
79946186 ATTATAT
66 ATTATAT
79946193 TTAATAATAA
Statistics
Matches: 185, Mismatches: 2, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
116 54 0.29
117 42 0.23
118 1 0.01
120 88 0.48
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (117 bp):
TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
ATTATATATTTTTATCTAATTATATTTAATAATAATTTTAAATTATATTTTA
Found at i:79946306 original size:102 final size:102
Alignment explanation
Indices: 79946075--79946293 Score: 395
Period size: 102 Copynumber: 2.2 Consensus size: 102
79946065 AATTATATAT
* * *
79946075 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATATTATTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGAT
*
79946140 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAATAAATTCATATAAGAATATTTAATATTAAGAA
79946177 TTTTATTAAATTATATTTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGA-
1 TTTTATTAAATTATATTTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGAT
79946241 TTTAATAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAATAAATTCATATAAGAATATTTAATATTAAGAA
79946278 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
79946294 ATTTTAATTA
Statistics
Matches: 113, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
101 52 0.46
102 61 0.54
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (102 bp):
TTTTATTAAATTATATTTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGAT
TTTAATAAATTCATATAAGAATATTTAATATTAAGAA
Found at i:79946307 original size:14 final size:15
Alignment explanation
Indices: 79946281--79946320 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
79946271 TTAAGAATTT
*
79946281 TATTAAATT-ATATA
1 TATTTAATTAATATA
79946295 T-TTTAATTAATATA
1 TATTTAATTAATATA
79946309 TATTTAA-TAATA
1 TATTTAATTAATA
79946321 ATTATGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 6 0.26
14 12 0.52
15 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTTAATTAATATA
Found at i:79946531 original size:44 final size:45
Alignment explanation
Indices: 79946468--79946564 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 45
79946458 CTATTACACC
*
79946468 TCCATTCCATTCAACCAAACACA-AGAA-TACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGAATTACTATTACGCCTCTAT
* * *
79946512 TCCATTACATTCAACCAAACAATTGAATTGCTATTACGTCTCTAT
1 TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAT
79946557 TCCATTAC
1 TCCATTAC
79946565 GCCTCTATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.49
45 23 0.49
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAT
Found at i:79946565 original size:16 final size:16
Alignment explanation
Indices: 79946544--79946608 Score: 112
Period size: 16 Copynumber: 4.1 Consensus size: 16
79946534 TTGAATTGCT
*
79946544 ATTACGTCTCTATTCC
1 ATTACGCCTCTATTCC
79946560 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
79946576 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
79946592 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
79946608 A
1 A
79946609 ATACAACGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.22, C:0.35, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:79952013 original size:19 final size:20
Alignment explanation
Indices: 79951974--79952012 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
79951964 TTTTCTTTAT
79951974 ATTTAT-AATTTTTTAAAAA
1 ATTTATAAATTTTTTAAAAA
79951993 ATTTATAAATTTTTTAAAAA
1 ATTTATAAATTTTTTAAAAA
79952013 TATAAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTATAAATTTTTTAAAAA
Found at i:79956389 original size:37 final size:37
Alignment explanation
Indices: 79956339--79956417 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
79956329 TTATTACGAA
* * *
79956339 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
79956376 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
79956413 GTCTT
1 GTCTT
79956418 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:79956614 original size:47 final size:47
Alignment explanation
Indices: 79956536--79957012 Score: 762
Period size: 47 Copynumber: 10.1 Consensus size: 47
79956526 CCCTTCGGGA
* * * * *
79956536 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* * *
79956583 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79956630 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79956677 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79956725 C-TATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79956772 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79956819 CTTATCACATATATATACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79956866 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79956913 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
79956962 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79957009 CTTA
1 CTTA
79957013 CTATCATTTC
Statistics
Matches: 404, Mismatches: 20, Indels: 12
0.93 0.05 0.03
Matches are distributed among these distances:
46 8 0.02
47 297 0.74
48 52 0.13
49 47 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79961867 original size:190 final size:190
Alignment explanation
Indices: 79961617--79962015 Score: 462
Period size: 190 Copynumber: 2.1 Consensus size: 190
79961607 CATGAAATTT
*
79961617 TAGTGGAGCAGATTGAAGCCACAAGTCTCATCTCCCTAAAGTTGCAGCGGAACAGACTAAAGATA
1 TAGTGGAGCAGATTGAAGCCACAAGTCTCATCTCCCTAAAGTTGCAGCGGAACAGACTAAAAATA
*** * * *
79961682 GTGGATCTTACTTCCCTGATGTTACAGTGGAATAGATCAAAGCAACAAATCACAAATCCTAT-AC
66 GAAAATCTTACTTCCCTGAAGTTACAGAGGAACAGATCAAAGCAACAAATCACAAATCCTATAAC
* * * * ** * * *
79961746 TCCTGAAGTTGTAGTGGGACGGATTGAAGTTACCATGGTGAATCTTGTCTCTTTGAAGTTG
131 -ACTGAAGTTGCAGTGGGACGGATGGAAGTCACCATGGCAAATCTTATCTCTCTAAAGTTG
* * * * *
79961807 TAGTGGAGCAGATTCAAGCCACAAGTC-CTATTTCCCTGAAA-TTGCAGTGGAGCGGACTAAAAA
1 TAGTGGAGCAGATTGAAGCCACAAGTCTC-ATCTCCCT-AAAGTTGCAGCGGAACAGACTAAAAA
* * ** * *
79961870 TAGAAAATCTTATTTCCCTGAAGTTGCAGAGGAACAGATTTAAGCCACAAGTCACAAATCCTATA
64 TAGAAAATCTTACTTCCCTGAAGTTACAGAGGAACAGATCAAAGCAACAAATCACAAATCCTATA
* *
79961935 ACACTGAAGTTGCATTGGGACGGATGGAAGTCATCATGGCAAATCTTATCTCTCTAAAGTTG
129 ACACTGAAGTTGCAGTGGGACGGATGGAAGTCACCATGGCAAATCTTATCTCTCTAAAGTTG
* * *
79961997 AAGCGGGGCAGATTGAAGC
1 TAGTGGAGCAGATTGAAGC
79962016 TACCAACCTT
Statistics
Matches: 173, Mismatches: 33, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
189 1 0.01
190 167 0.97
191 5 0.03
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (190 bp):
TAGTGGAGCAGATTGAAGCCACAAGTCTCATCTCCCTAAAGTTGCAGCGGAACAGACTAAAAATA
GAAAATCTTACTTCCCTGAAGTTACAGAGGAACAGATCAAAGCAACAAATCACAAATCCTATAAC
ACTGAAGTTGCAGTGGGACGGATGGAAGTCACCATGGCAAATCTTATCTCTCTAAAGTTG
Found at i:79968432 original size:13 final size:13
Alignment explanation
Indices: 79968414--79968438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79968404 TACGTTGACA
79968414 TCGATATGTGATT
1 TCGATATGTGATT
79968427 TCGATATGTGAT
1 TCGATATGTGAT
79968439 ATGCGAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (13 bp):
TCGATATGTGATT
Found at i:79968444 original size:101 final size:101
Alignment explanation
Indices: 79968309--79968555 Score: 295
Period size: 101 Copynumber: 2.4 Consensus size: 101
79968299 TGTATATGAG
* * * * * *
79968309 GCATCGACATGTGAATTCCGATATGTGATGTGCGAGTAAGACCATGGCATTGATGGGTGATTCCT
1 GCATCGATATGTG-ATTTCGATATGTGATGTGCGAGTAAGACCATGACATCGATAGGTGATTCCG
*
79968374 ATATATATGCGCGAGTAAGACCA-CGTTTAATACGTT-
65 ATATATATGCGCCAGTAAGACCATCGTTT-ATACGTTA
* *
79968410 GACATCGATATGTGATTTCGATATGTGATATGCGAGTAAGACCATGACATCGATATGTGATTCCG
1 G-CATCGATATGTGATTTCGATATGTGATGTGCGAGTAAGACCATGACATCGATAGGTGATTCCG
* * * *
79968475 ATATATGTGTGCCAGTAAGTCCATGGTTTATACGTTA
65 ATATATATGCGCCAGTAAGACCATCGTTTATACGTTA
* *
79968512 GCATCGATATGTGA-TTCTGATATATG-TGTGCGAGTAAGTCCATG
1 GCATCGATATGTGATTTC-GATATGTGATGTGCGAGTAAGACCATG
79968556 TTTTATACGT
Statistics
Matches: 126, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
100 19 0.15
101 91 0.72
102 16 0.13
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (101 bp):
GCATCGATATGTGATTTCGATATGTGATGTGCGAGTAAGACCATGACATCGATAGGTGATTCCGA
TATATATGCGCCAGTAAGACCATCGTTTATACGTTA
Found at i:79968519 original size:56 final size:56
Alignment explanation
Indices: 79968457--79968604 Score: 233
Period size: 56 Copynumber: 2.6 Consensus size: 56
79968447 AAGACCATGA
* *
79968457 CATCGATATGTGATTCCGATATATGTGTGCCAGTAAGTCCATGGTTTATACGTTAG
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCATGGTTTATACGTTAG
* *
79968513 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCATGTTTTATACGTTGG
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCATGGTTTATACGTTAG
* **
79968569 CATCGAAAAATGATTCTGATATATGTGTGCGAGTAA
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAA
79968605 AACCCTGTCT
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 85 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.36
Consensus pattern (56 bp):
CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCATGGTTTATACGTTAG
Found at i:79968629 original size:56 final size:56
Alignment explanation
Indices: 79968523--79968630 Score: 128
Period size: 56 Copynumber: 1.9 Consensus size: 56
79968513 CATCGATATG
** * * * *
79968523 TGATTCTGATATATGTGTGCGAGTAAGTCCATGTTTTATACGTTGGCATCGAAAAA
1 TGATTCTGATATATGTGTGCGAGTAAAACCATGTCTGAGACGTTGACATCGAAAAA
* *
79968579 TGATTCTGATATATGTGTGCGAGTAAAACCCTGTCTGGGACAG-TGACATCGA
1 TGATTCTGATATATGTGTGCGAGTAAAACCATGTCTGAGAC-GTTGACATCGA
79968631 TATGTGATTA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
56 42 0.98
57 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (56 bp):
TGATTCTGATATATGTGTGCGAGTAAAACCATGTCTGAGACGTTGACATCGAAAAA
Found at i:79971134 original size:48 final size:50
Alignment explanation
Indices: 79971020--79971149 Score: 156
Period size: 48 Copynumber: 2.6 Consensus size: 50
79971010 CGAGGCCAGC
* * * * *
79971020 GCCATGTCCCAGACATAGTCTTACACTAGCTCTCACATATCCGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAACACTCACATATACGTACCGAT
* * **
79971070 GCCATGTCTCAAACATGGTCTTACACTAACAC-C-TTTATACGTACCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAACACTCACATATACGTACCGAT
*
79971118 GCCATGTCCCAGACATGGTCTTACACTGACAC
1 GCCATGTCCCAGACATGGTCTTACACTAACAC
79971150 ATCTCATTTT
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 40 0.59
49 1 0.01
50 27 0.40
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTAACACTCACATATACGTACCGAT
Found at i:79973202 original size:6 final size:5
Alignment explanation
Indices: 79973172--79973201 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
79973162 AATAATTATA
79973172 AATTT AATTT AATTT AATTT AATTAT AATT
1 AATTT AATTT AATTT AATTT AATT-T AATT
79973202 AACACAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
AATTT
Found at i:79979805 original size:92 final size:92
Alignment explanation
Indices: 79979694--79979863 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
79979684 GCCCCTAAGT
* *
79979694 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79979759 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
79979786 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79979851 CGAGTTCGGATGC
66 CGAGTTCGGATGC
79979864 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:79979860 original size:46 final size:46
Alignment explanation
Indices: 79979689--79979860 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
79979679 AACCCGCCCC
* * *
79979689 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
79979735 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
79979781 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
79979827 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
79979861 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:79979879 original size:46 final size:46
Alignment explanation
Indices: 79979691--79979879 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
79979681 CCCGCCCCTA
* ** * *
79979691 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
79979736 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
79979784 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
79979829 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
79979875 AGTGA
1 AGTGA
79979880 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:79980312 original size:30 final size:30
Alignment explanation
Indices: 79980278--79980337 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
79980268 ATTTAATACG
79980278 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
79980308 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
79980338 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:79987277 original size:93 final size:93
Alignment explanation
Indices: 79987170--79987340 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
79987160 GCCCCTAAGT
* *
79987170 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79987235 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
79987263 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79987328 CGAGTTCGGATGC
66 CGAGTTCGGATGC
79987341 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79987337 original size:46 final size:46
Alignment explanation
Indices: 79987165--79987337 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
79987155 AACCCGCCCC
* * *
79987165 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
79987211 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
79987259 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
79987304 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
79987338 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:79987795 original size:30 final size:30
Alignment explanation
Indices: 79987761--79987820 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
79987751 ATTTAATACG
79987761 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
79987791 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
79987821 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Done.