Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 252 of 325
Found at i:79989265 original size:46 final size:46
Alignment explanation
Indices: 79989206--79989436 Score: 230
Period size: 46 Copynumber: 4.8 Consensus size: 46
79989196 TGACATGATA
* *
79989206 CCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTG
1 CCATAGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGTTG
* * *
79989252 CCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGCTG
1 CCATAGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTG
* * * *
79989298 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
1 CCATAGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTG
* * *
79989344 CCATAGTATCTTTCAACCATGGTCTACCATGGTCTTACACATTTCATATCAGGTTG
1 CCATAGTATCTTT----CA------ACCATGGTCTTACTCATTTCATGTCACGTTG
* *
79989400 CCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CCATAGTATCTTTCAACCATGGTCTTACTCATTTCAT
79989437 ATCAGAGAGC
Statistics
Matches: 162, Mismatches: 12, Indels: 22
0.83 0.06 0.11
Matches are distributed among these distances:
45 4 0.02
46 111 0.69
50 2 0.01
52 2 0.01
56 43 0.27
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
CCATAGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTG
Found at i:79989380 original size:56 final size:56
Alignment explanation
Indices: 79989313--79989424 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
79989303 GTATCTTTCA
79989313 ACCATGGTCTTACACATTTCATATCAGGTTGCCATAGTATCTTTCAACCATGGTCT
1 ACCATGGTCTTACACATTTCATATCAGGTTGCCATAGTATCTTTCAACCATGGTCT
*
79989369 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCT
1 ACCATGGTCTTACACATTTCATATCAGGTTGCCATAGTATCTTTCAACCATGGTCT
79989425 TACACATTTC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (56 bp):
ACCATGGTCTTACACATTTCATATCAGGTTGCCATAGTATCTTTCAACCATGGTCT
Found at i:79989404 original size:30 final size:30
Alignment explanation
Indices: 79989314--79989406 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
79989304 TATCTTTCAA
79989314 CCATGGTCTTACACATTTCATATCAGGTTG
1 CCATGGTCTTACACATTTCATATCAGGTTG
* * * *
79989344 CCATAG---TA-TC-TTTCA-ACCATGGTCTA
1 CCATGGTCTTACACATTTCATATCA-GGT-TG
79989370 CCATGGTCTTACACATTTCATATCAGGTTG
1 CCATGGTCTTACACATTTCATATCAGGTTG
79989400 CCATGGT
1 CCATGGT
79989407 ATCTTTCAAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
24 3 0.06
25 8 0.17
26 7 0.15
27 2 0.04
29 2 0.04
30 14 0.30
31 8 0.17
32 3 0.06
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (30 bp):
CCATGGTCTTACACATTTCATATCAGGTTG
Found at i:79996070 original size:5 final size:5
Alignment explanation
Indices: 79996055--79996088 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
79996045 TTGTGTGTTC
79996055 TTTATT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
79996089 TTCTCAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 24 0.86
6 4 0.14
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:80003031 original size:30 final size:30
Alignment explanation
Indices: 80002995--80003053 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80002985 ATGCTAAAAC
*
80002995 TTTCAAAGAACATACAC-AGTTAGAAGTTCA
1 TTTCAAAGAACATAAACGA-TTAGAAGTTCA
80003025 TTTCAAAGAACATAAACGATTAGAAGTTC
1 TTTCAAAGAACATAAACGATTAGAAGTTC
80003054 CTTTTTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (30 bp):
TTTCAAAGAACATAAACGATTAGAAGTTCA
Found at i:80007818 original size:13 final size:13
Alignment explanation
Indices: 80007802--80007826 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80007792 TATATTTAGT
80007802 ATATAAATATTAA
1 ATATAAATATTAA
80007815 ATATAAATATTA
1 ATATAAATATTA
80007827 CCCCTTCTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATATAAATATTAA
Found at i:80013074 original size:15 final size:15
Alignment explanation
Indices: 80013056--80013085 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80013046 TTTAATTTGG
*
80013056 GGATTTATATTTGTT
1 GGATTTATATCTGTT
80013071 GGATTTATATCTGTT
1 GGATTTATATCTGTT
80013086 AGCAGTAGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.57
Consensus pattern (15 bp):
GGATTTATATCTGTT
Found at i:80015464 original size:27 final size:26
Alignment explanation
Indices: 80015386--80015501 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 26
80015376 AGCATGGCTG
* * * *
80015386 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCATAGCCA
* *
80015412 CCAAATACAGATATTGTGGCACAGCCA
1 CCAGA-ACAGATATTGTGGCATAGCCA
*
80015439 CTAGAACAGATATTCGTGGCATAGCCA
1 CCAGAACAGATATT-GTGGCATAGCCA
*
80015466 CCAGAAACAGATATTTATGGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCATAGCCA
80015494 CCAGAACA
1 CCAGAACA
80015502 CTTCCTCCAT
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 13 0.17
27 38 0.50
28 23 0.30
29 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCATAGCCA
Found at i:80015500 original size:55 final size:53
Alignment explanation
Indices: 80015386--80015501 Score: 135
Period size: 55 Copynumber: 2.2 Consensus size: 53
80015376 AGCATGGCTG
* * *
80015386 CCAGAATAGATATTGTGACAGAGTCACCAAATACAGATATTGTGGCACAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAAATACAGATATTATGGCACAGCCA
* * * *
80015439 CTAGAACAGATATTCGTGGCATAGCCACCAGAA-ACAGATATTTATGGCATAGCCA
1 CCAGAACAGATATT-GTGACAGAGCCACCA-AATACAGATA-TTATGGCACAGCCA
80015494 CCAGAACA
1 CCAGAACA
80015502 CTTCCTCCAT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
53 12 0.23
54 19 0.37
55 21 0.40
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAAATACAGATATTATGGCACAGCCA
Found at i:80019381 original size:44 final size:46
Alignment explanation
Indices: 80019324--80019416 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 46
80019314 TACAATATCT
* * *
80019324 ATTCTATTCAACCAAATATA-AGAA-TACT-ATTACAACTCTATTTC
1 ATTCCATTCAACCAAACA-ACAGAATTACTAATTACAACTCTATTAC
*
80019368 ATTCCATTCAACCAAACAACAGAATTACTAATTACAGCTCTATTAC
1 ATTCCATTCAACCAAACAACAGAATTACTAATTACAACTCTATTAC
80019414 ATT
1 ATT
80019417 ACAACTCTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 20 0.48
45 4 0.10
46 17 0.40
ACGTcount: A:0.41, C:0.23, G:0.03, T:0.33
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAACAGAATTACTAATTACAACTCTATTAC
Found at i:80019419 original size:16 final size:16
Alignment explanation
Indices: 80019398--80019435 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
80019388 AGAATTACTA
*
80019398 ATTACAGCTCTATTAC
1 ATTACAACTCTATTAC
*
80019414 ATTACAACTCTATTCC
1 ATTACAACTCTATTAC
80019430 ATTACA
1 ATTACA
80019436 TTCTTATTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTACAACTCTATTAC
Found at i:80019507 original size:13 final size:13
Alignment explanation
Indices: 80019484--80019549 Score: 60
Period size: 13 Copynumber: 5.1 Consensus size: 13
80019474 CTTAAACCAA
*
80019484 ACTTTTTAAAAGT
1 ACTTTTCAAAAGT
* **
80019497 ACTTCTCAAAAAC
1 ACTTTTCAAAAGT
* *
80019510 ACTTTTCCAGAGT
1 ACTTTTCAAAAGT
* *
80019523 ACTTTTTAAAAGA
1 ACTTTTCAAAAGT
80019536 ACTTTTCAAAAGT
1 ACTTTTCAAAAGT
80019549 A
1 A
80019550 ATGCTAAACT
Statistics
Matches: 38, Mismatches: 15, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (13 bp):
ACTTTTCAAAAGT
Found at i:80019549 original size:26 final size:25
Alignment explanation
Indices: 80019482--80019549 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
80019472 ATCTTAAACC
*
80019482 AAACTTTTTAAAAGTACTTCTCAAA
1 AAACTTTTCAAAAGTACTTCTCAAA
* * * *
80019507 AACACTTTTCCAGAGTACTTTTTAAA
1 AA-ACTTTTCAAAAGTACTTCTCAAA
80019533 AGAACTTTTCAAAAGTA
1 A-AACTTTTCAAAAGTA
80019550 ATGCTAAACT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
25 2 0.06
26 31 0.91
27 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.35
Consensus pattern (25 bp):
AAACTTTTCAAAAGTACTTCTCAAA
Found at i:80023988 original size:18 final size:18
Alignment explanation
Indices: 80023974--80024009 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
80023964 CCCAAATATT
*
80023974 ATTTATTTAA-TAAATTA
1 ATTTAATTAACTAAATTA
80023991 ATTTAATTAACTAAATTA
1 ATTTAATTAACTAAATTA
80024009 A
1 A
80024010 ATTATCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTTAATTAACTAAATTA
Found at i:80025712 original size:42 final size:41
Alignment explanation
Indices: 80025665--80025779 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 41
80025655 AATACTCGAT
*
80025665 ATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTAT-TATA
1 ATCTCGCACACTAAGTGCC-ATACATAGCCGAAGCTATCT-CA
* * *
80025707 ATCTCGCACATTAAGTGCCTTACATAGCCGAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCA
* * *
80025748 GTCTCGCACACTAAGTGTCATACATAGTCGAA
1 ATCTCGCACACTAAGTGCCATACATAGCCGAA
80025780 TTGTCGTCAA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 44 0.70
42 19 0.30
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCA
Found at i:80029757 original size:10 final size:10
Alignment explanation
Indices: 80029742--80029766 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
80029732 ATGTAGAACC
80029742 AAATGGATAG
1 AAATGGATAG
80029752 AAATGGATAG
1 AAATGGATAG
80029762 AAATG
1 AAATG
80029767 ATGAAGTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.28, T:0.20
Consensus pattern (10 bp):
AAATGGATAG
Found at i:80035263 original size:39 final size:39
Alignment explanation
Indices: 80035209--80035390 Score: 165
Period size: 39 Copynumber: 4.6 Consensus size: 39
80035199 GAATCACATA
* * *
80035209 CCTTCGGAATTTAACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAACCGGATATAG-TAACTCGCACAAATG
* *
80035248 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATG
1 CCTTCGGGACTTAA-CCGGATATAGTAACTCGCACAAATG
*
80035288 CCTTCGGG-CTTAGCCTGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACC-GGATA-TAGTAACTCGCACAAATG
* * * *
80035327 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAG
1 CCTTCGGGA-CTTA-ACCGGATATAGTAAC-TCGCACAAATG
*
80035368 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTA-ACCGGATAT
80035391 CATTCGAATA
Statistics
Matches: 120, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
38 4 0.03
39 42 0.35
40 41 0.34
41 30 0.25
42 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCGGATATAGTAACTCGCACAAATG
Found at i:80035279 original size:40 final size:40
Alignment explanation
Indices: 80035223--80035390 Score: 191
Period size: 40 Copynumber: 4.2 Consensus size: 40
80035213 CGGAATTTAA
* *
80035223 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAAC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80035263 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80035302 CTGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80035342 CCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80035383 CCGGATAT
1 CCGGATAT
80035391 CATTCGAATA
Statistics
Matches: 108, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
38 2 0.02
39 32 0.30
40 43 0.40
41 28 0.26
42 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80035346 original size:79 final size:81
Alignment explanation
Indices: 80035235--80035383 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 81
80035225 GGATATAGCT
* * * * *
80035235 ACTCGCTCAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTCGGG-CT
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAAGCCTTCGGGACT
80035298 TAGCCTGGAATTAGTA
66 TAGCCTGGAATTAGTA
** *
80035314 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGAC
1 ACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAAGCCTTCGGGAC
80035378 TTAGCC
65 TTAGCC
80035384 CGGATATCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
78 3 0.05
79 33 0.56
80 16 0.27
81 7 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (81 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAAGCCTTCGGGACT
TAGCCTGGAATTAGTA
Found at i:80046554 original size:20 final size:20
Alignment explanation
Indices: 80046529--80046566 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
80046519 CACATGCCAA
*
80046529 AGTGAAAAATTGATTTTTAT
1 AGTGAAAAAGTGATTTTTAT
80046549 AGTGAAAAAGTGATTTTT
1 AGTGAAAAAGTGATTTTT
80046567 GTCGGCATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (20 bp):
AGTGAAAAAGTGATTTTTAT
Found at i:80056542 original size:40 final size:40
Alignment explanation
Indices: 80056479--80056659 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
80056469 ATTCGGATTG
*
80056479 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGAGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
80056518 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
80056558 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
80056598 ATAACCGGGCTAAGTCACGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
80056638 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
80056660 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 28 0.22
40 99 0.78
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:80058752 original size:39 final size:39
Alignment explanation
Indices: 80058687--80058967 Score: 278
Period size: 39 Copynumber: 7.2 Consensus size: 39
80058677 ATAATTGTAA
*
80058687 CCCTGATCACACATACGTGCCTCTGTTGTACTTTAGTAC
1 CCCTGATCACACATACGTGCCCCTGTTGTACTTTAGTAC
* *
80058726 CCCTAATCCCACATACGTGCCCCTGTTGTACTTTAGTAC
1 CCCTGATCACACATACGTGCCCCTGTTGTACTTTAGTAC
* * * * * **
80058765 CCTTGATCGCACTTAAGTG-CCCTCGTTGTCCTTCGGTAC
1 CCCTGATCACACATACGTGCCCCT-GTTGTACTTTAGTAC
* * * * *
80058804 CCTTGATCGCACATATGTACCCCCTTTTGTACTTTAGTAC
1 CCCTGATCACACATACGT-GCCCCTGTTGTACTTTAGTAC
* * * **
80058844 CCCTGATCACTCTTACATGCCCCTGTTGTACTTCGGTAC
1 CCCTGATCACACATACGTGCCCCTGTTGTACTTTAGTAC
* * *
80058883 CCCTGATCACACATATGTGCCCCTATTGTA-TTTCGGTAC
1 CCCTGATCACACATACGTGCCCCTGTTGTACTTT-AGTAC
* * * *
80058922 CCTTGATCGCACTTACGTGCCCCTGTTGTACTTCAGTAC
1 CCCTGATCACACATACGTGCCCCTGTTGTACTTTAGTAC
80058961 CCCTGAT
1 CCCTGAT
80058968 AGCACTTTTG
Statistics
Matches: 195, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
38 6 0.03
39 160 0.82
40 25 0.13
41 4 0.02
ACGTcount: A:0.18, C:0.33, G:0.16, T:0.33
Consensus pattern (39 bp):
CCCTGATCACACATACGTGCCCCTGTTGTACTTTAGTAC
Found at i:80058920 original size:118 final size:117
Alignment explanation
Indices: 80058686--80058967 Score: 334
Period size: 118 Copynumber: 2.4 Consensus size: 117
80058676 TATAATTGTA
* * * * * *
80058686 ACCC-TGATCACACATACGTGCCTCTGTTGTACTTTAGTACCCCTAATCCCACATACGTGCCCCT
1 ACCCTTGATCGCACATACGTCCCCCTGTTGTACTTTAGTACCCCTGATCACACATACATGCCCCT
* * * * * *
80058750 GTTGTACTTTAGTACCCTTGATCGCACTTAAGTGCCCTCGTTGTCCTTCGGT
66 GTTGTACTTCAGTACCCCTGATCACACATAAGTGCCCTCATTGTACTTCGGT
* * * *
80058802 ACCCTTGATCGCACATATGTACCCCCTTTTGTACTTTAGTACCCCTGATCACTCTTACATGCCCC
1 ACCCTTGATCGCACATACGT-CCCCCTGTTGTACTTTAGTACCCCTGATCACACATACATGCCCC
* * *
80058867 TGTTGTACTTCGGTACCCCTGATCACACATATGTGCCC-CTATTGTATTTCGGT
65 TGTTGTACTTCAGTACCCCTGATCACACATAAGTGCCCTC-ATTGTACTTCGGT
* * *
80058920 ACCCTTGATCGCACTTACGTGCCCCTGTTGTACTTCAGTACCCCTGAT
1 ACCCTTGATCGCACATACGTCCCCCTGTTGTACTTTAGTACCCCTGAT
80058968 AGCACTTTTG
Statistics
Matches: 139, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
116 4 0.03
117 39 0.28
118 96 0.69
ACGTcount: A:0.18, C:0.33, G:0.16, T:0.33
Consensus pattern (117 bp):
ACCCTTGATCGCACATACGTCCCCCTGTTGTACTTTAGTACCCCTGATCACACATACATGCCCCT
GTTGTACTTCAGTACCCCTGATCACACATAAGTGCCCTCATTGTACTTCGGT
Found at i:80061114 original size:33 final size:33
Alignment explanation
Indices: 80061059--80061213 Score: 206
Period size: 33 Copynumber: 4.7 Consensus size: 33
80061049 TTCTCTTTGA
* ** *
80061059 TGTGCTGGTTGGATAAGGTCTTATGAGCATTGG
1 TGTGATGGTTGGATTTGCTCTTATGAGCATTGG
80061092 TGTGATGGTTGGATTTGCTCTTATGAGCATTGG
1 TGTGATGGTTGGATTTGCTCTTATGAGCATTGG
*
80061125 TGTAATGGTTGG-TTTAGCTCTTATGAGCATTGG
1 TGTGATGGTTGGATTT-GCTCTTATGAGCATTGG
* * *
80061158 TGTGCTGGTTGAATTAGCTCTTATGAGCATTGG
1 TGTGATGGTTGGATTTGCTCTTATGAGCATTGG
80061191 TGTGATGGTTGG-TTTAGCTCTTA
1 TGTGATGGTTGGATTT-GCTCTTA
80061214 ATGGTTGGAT
Statistics
Matches: 107, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
32 5 0.05
33 100 0.93
34 2 0.02
ACGTcount: A:0.17, C:0.10, G:0.32, T:0.41
Consensus pattern (33 bp):
TGTGATGGTTGGATTTGCTCTTATGAGCATTGG
Found at i:80061178 original size:66 final size:66
Alignment explanation
Indices: 80061077--80061213 Score: 238
Period size: 66 Copynumber: 2.1 Consensus size: 66
80061067 TTGGATAAGG
* *
80061077 TCTTATGAGCATTGGTGTGATGGTTGGATTTGCTCTTATGAGCATTGGTGTAATGGTTGGTTTAG
1 TCTTATGAGCATTGGTGTGATGGTTGAATTAGCTCTTATGAGCATTGGTGTAATGGTTGGTTTAG
80061142 C
66 C
* *
80061143 TCTTATGAGCATTGGTGTGCTGGTTGAATTAGCTCTTATGAGCATTGGTGTGATGGTTGGTTTAG
1 TCTTATGAGCATTGGTGTGATGGTTGAATTAGCTCTTATGAGCATTGGTGTAATGGTTGGTTTAG
80061208 C
66 C
80061209 TCTTA
1 TCTTA
80061214 ATGGTTGGAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.17, C:0.10, G:0.31, T:0.42
Consensus pattern (66 bp):
TCTTATGAGCATTGGTGTGATGGTTGAATTAGCTCTTATGAGCATTGGTGTAATGGTTGGTTTAG
C
Found at i:80061219 original size:19 final size:19
Alignment explanation
Indices: 80061195--80061232 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
80061185 CATTGGTGTG
*
80061195 ATGGTTGGTTTAGCTCTTA
1 ATGGTTGGATTAGCTCTTA
*
80061214 ATGGTTGGATTAGTTCTTA
1 ATGGTTGGATTAGCTCTTA
80061233 TGGGCATCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.08, G:0.26, T:0.47
Consensus pattern (19 bp):
ATGGTTGGATTAGCTCTTA
Found at i:80066653 original size:49 final size:49
Alignment explanation
Indices: 80066600--80066823 Score: 279
Period size: 49 Copynumber: 4.5 Consensus size: 49
80066590 CTGGTACGCA
* * * * *
80066600 TAGTAGCTTGCACATAGTACTACACATGCGACCAATTATACGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACG
* *
80066649 TAGTAGCCTGCACTTAGTAGTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACG
** * *
80066698 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATTCGGTACACG
* * * *
80066748 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTT-TTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATTCGGTACACG
80066798 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
80066824 TGCGACCTCA
Statistics
Matches: 153, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
49 75 0.49
50 75 0.49
51 2 0.01
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACG
Found at i:80066772 original size:99 final size:100
Alignment explanation
Indices: 80066592--80066823 Score: 290
Period size: 99 Copynumber: 2.3 Consensus size: 100
80066582 AAAGCTATCT
* * * * * ** ** *
80066592 GGTACGCATAGTAGCTTGCACATAGTACTACACATGCGACC-AATTATACGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGC
*
80066656 CTGCACTTAGTAGTACACACGTGA-C-CAATTATCC
66 CTGCACTTAGTACTACACACGTGATCACAATT-TCC
*
80066690 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGC
* **
80066755 CTGCACTTAGTACTACACACGTGATCACAGTTTTG
66 CTGCACTTAGTACTACACACGTGATCACAATTTCC
*
80066790 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACA
80066824 TGCGACCTCA
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
98 35 0.31
99 41 0.36
100 34 0.30
101 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGATCACAATTTCC
Found at i:80067164 original size:14 final size:16
Alignment explanation
Indices: 80067132--80067169 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
80067122 ATTTACATAA
*
80067132 CATATATCACATATTT
1 CATATATCACATATGT
80067148 CATATATCAC-T-TGT
1 CATATATCACATATGT
80067162 CATATATC
1 CATATATC
80067170 TTCATTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.48
15 1 0.05
16 10 0.48
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:80069007 original size:15 final size:15
Alignment explanation
Indices: 80068955--80069008 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
80068945 TAAAGATAAC
*
80068955 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
80068969 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
80068984 GAA-AAACCCAGAATA
1 -AAGAAACCCAGAATA
80068999 AAGAAACCCA
1 AAGAAACCCA
80069009 AGATACGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 11 0.33
15 19 0.58
16 3 0.09
ACGTcount: A:0.61, C:0.19, G:0.13, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:80077115 original size:40 final size:40
Alignment explanation
Indices: 80076918--80077101 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
80076908 CGAATGATGT
* * * *
80076918 CCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
80076958 CCGGACTAGGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
80076998 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80077036 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80077077 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80077102 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:80077123 original size:79 final size:79
Alignment explanation
Indices: 80076970--80077134 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
80076960 GGACTAGGAT
* **
80076970 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
80077035 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
80077049 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
80077112 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
80077128 CCGAAGG
1 CCGAAGG
80077135 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:80087353 original size:16 final size:16
Alignment explanation
Indices: 80087332--80087363 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80087322 TTTTGGTAAT
*
80087332 AAGTATCGATACTTTA
1 AAGTATCAATACTTTA
80087348 AAGTATCAATACTTTA
1 AAGTATCAATACTTTA
80087364 CCGAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (16 bp):
AAGTATCAATACTTTA
Found at i:80091545 original size:19 final size:19
Alignment explanation
Indices: 80091521--80091557 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
80091511 AGGTGATTGA
80091521 AAACTAGGATTTTTAACTC
1 AAACTAGGATTTTTAACTC
80091540 AAACTAGGATTTTTAACT
1 AAACTAGGATTTTTAACT
80091558 AAGTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
AAACTAGGATTTTTAACTC
Found at i:80100165 original size:15 final size:17
Alignment explanation
Indices: 80100145--80100176 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
80100135 AGCATAAATT
80100145 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
80100160 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
80100177 CAAATATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:80106191 original size:33 final size:33
Alignment explanation
Indices: 80106154--80106223 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
80106144 TCTGTTTAGT
80106154 AACATTTGCAACAATTCTTATGGAAATTCTTAC
1 AACATTTGCAACAATTCTTATGGAAATTCTTAC
*
80106187 AACATTTGTAACAATTCTTATGGAAATTCTTAC
1 AACATTTGCAACAATTCTTATGGAAATTCTTAC
80106220 AACA
1 AACA
80106224 ACTCTGCACG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.36
Consensus pattern (33 bp):
AACATTTGCAACAATTCTTATGGAAATTCTTAC
Found at i:80108816 original size:39 final size:39
Alignment explanation
Indices: 80108762--80108840 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
80108752 GGTATTCGCA
80108762 ATTTTTTAGGACATGCGGGGGTTTTACCAATGGTTTATT
1 ATTTTTTAGGACATGCGGGGGTTTTACCAATGGTTTATT
80108801 ATTTTTTAGGACATGCGGGGGTTTTACCAATGGTTTATT
1 ATTTTTTAGGACATGCGGGGGTTTTACCAATGGTTTATT
80108840 A
1 A
80108841 GAGATTTTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (39 bp):
ATTTTTTAGGACATGCGGGGGTTTTACCAATGGTTTATT
Found at i:80111896 original size:34 final size:35
Alignment explanation
Indices: 80111852--80111918 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
80111842 CTGTAAAATG
80111852 TTTTCCGTAAAATGAATT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGAATTACTGGAAAATATTTTAC
* *
80111886 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGAATTACTGGAAAATATTTT
80111919 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.53
35 14 0.47
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.43
Consensus pattern (35 bp):
TTTTCCGTAAAATGAATTACTGGAAAATATTTTAC
Found at i:80113293 original size:27 final size:27
Alignment explanation
Indices: 80113263--80113332 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
80113253 AATAATCAAT
*
80113263 TCAATATCCAACAATGTTAAAACATA-A
1 TCAATATCCAACAAT-TCAAAACATATA
* *
80113290 TCAATATCTAACCAATTCAAGACATATA
1 TCAATATCCAA-CAATTCAAAACATATA
*
80113318 TCAAAATCCAACAAT
1 TCAATATCCAACAAT
80113333 CTAAAATCTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCCAACAATTCAAAACATATA
Found at i:80117583 original size:6 final size:6
Alignment explanation
Indices: 80117572--80117602 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
80117562 AATATTTCCC
*
80117572 ACAGAA ACAGAA ACAGAA ACAAAA ACAGAA A
1 ACAGAA ACAGAA ACAGAA ACAGAA ACAGAA A
80117603 ATACAAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.71, C:0.16, G:0.13, T:0.00
Consensus pattern (6 bp):
ACAGAA
Found at i:80121694 original size:29 final size:29
Alignment explanation
Indices: 80121661--80121718 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
80121651 TAAGGTTAAG
80121661 GTAAAAAATGTAATTGAATAAAATAAATT
1 GTAAAAAATGTAATTGAATAAAATAAATT
80121690 GTAAAAAATGTAATTGAATAAAATAAATT
1 GTAAAAAATGTAATTGAATAAAATAAATT
80121719 AAGTAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.31
Consensus pattern (29 bp):
GTAAAAAATGTAATTGAATAAAATAAATT
Found at i:80121697 original size:14 final size:15
Alignment explanation
Indices: 80121665--80121727 Score: 62
Period size: 14 Copynumber: 4.3 Consensus size: 15
80121655 GTTAAGGTAA
*
80121665 AAAATGTAATTGAAT
1 AAAATGAAATTGAAT
80121680 AAAAT-AAATTGTAA-
1 AAAATGAAATTG-AAT
*
80121694 AAAATGTAATTGAAT
1 AAAATGAAATTGAAT
80121709 AAAAT-AAATT-AAGT
1 AAAATGAAATTGAA-T
80121723 AAAAT
1 AAAAT
80121728 AACTAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
13 2 0.05
14 22 0.54
15 17 0.41
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (15 bp):
AAAATGAAATTGAAT
Found at i:80121712 original size:15 final size:15
Alignment explanation
Indices: 80121665--80121713 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
80121655 GTTAAGGTAA
80121665 AAAATGTAATTGAAT
1 AAAATGTAATTGAAT
*
80121680 AAAAT-AAATTGTAA-
1 AAAATGTAATTG-AAT
80121694 AAAATGTAATTGAAT
1 AAAATGTAATTGAAT
80121709 AAAAT
1 AAAAT
80121714 AAATTAAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.31
Consensus pattern (15 bp):
AAAATGTAATTGAAT
Found at i:80130487 original size:22 final size:22
Alignment explanation
Indices: 80130462--80130512 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
80130452 ATGTTGTTAC
80130462 TTTTATTCTAT-TTTAAGAC-TAT
1 TTTTATT-TATCTTTAAG-CTTAT
*
80130484 TTTTATTTTTCTTTAAGCTTAT
1 TTTTATTTATCTTTAAGCTTAT
80130506 TTTTATT
1 TTTTATT
80130513 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.22, C:0.08, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTTATTTATCTTTAAGCTTAT
Found at i:80132221 original size:40 final size:40
Alignment explanation
Indices: 80132168--80132247 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
80132158 AAGAATTTAT
80132168 TTTGATTACGAGTTGAGGATTTTTGCTTGAGGACAAGCAA
1 TTTGATTACGAGTTGAGGATTTTTGCTTGAGGACAAGCAA
* *
80132208 TTTGATTATGAGTTGAGGATTTTTTCTTGAGGACAAGCAA
1 TTTGATTACGAGTTGAGGATTTTTGCTTGAGGACAAGCAA
80132248 ATGCTTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.38
Consensus pattern (40 bp):
TTTGATTACGAGTTGAGGATTTTTGCTTGAGGACAAGCAA
Found at i:80140197 original size:26 final size:26
Alignment explanation
Indices: 80140162--80140212 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
80140152 AATGTGAAAG
*
80140162 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
80140188 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
80140213 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:80140224 original size:103 final size:104
Alignment explanation
Indices: 80140084--80140306 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
80140074 TGTATATAAA
** * *
80140084 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
80140148 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
80140187 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
80140252 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
80140291 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
80140307 GATATACATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 90 0.80
104 22 0.20
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:80140355 original size:71 final size:72
Alignment explanation
Indices: 80140225--80140376 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
80140215 TCATTGGTGG
* * *
80140225 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATACACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
80140290 GAGGGGT
66 GAGGGGT
***
80140297 TGCTAAGTGCGATATACATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATACACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
80140361 GAGGGGT
66 GAGGGGT
80140368 TGCTAAGTG
1 TGCTAAGTG
80140377 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 45 0.61
72 29 0.39
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATACACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:80145160 original size:79 final size:81
Alignment explanation
Indices: 80145016--80145198 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
80145006 TCGAATGATG
* * *
80145016 TCCGTGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
80145080 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * ** *
80145095 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGTA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
80145157 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
80145175 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80145199 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:80145214 original size:40 final size:40
Alignment explanation
Indices: 80145021--80145200 Score: 208
Period size: 40 Copynumber: 4.5 Consensus size: 40
80145011 TGATGTCCGT
* * *
80145021 GCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGG
* *
80145061 ACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGG
1 GCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGG
*
80145101 GCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGG
* *
80145140 GTTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
*
80145180 GCTATGTCCCGAAGGCATTTG
1 GCTAAGTCCCGAAGGCATTTG
80145201 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
Found at i:80145222 original size:79 final size:77
Alignment explanation
Indices: 80145050--80145235 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 77
80145040 GTGCTAAGTG
* * *
80145050 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGTATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
80145115 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* *
80145129 ACTAAATCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGTATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
80145193 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
80145208 AGCTATATCCGGTTAAATTCCGAAGGTA
1 A-CTATATCCGGTT-AAGTCCGAAGGTA
80145236 CGTGATTCGG
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
78 3 0.03
79 59 0.65
80 29 0.32
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGTATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:80152094 original size:30 final size:30
Alignment explanation
Indices: 80152053--80152112 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
80152043 ACTTAGAAAG
80152053 AGCTCAATTTGTGATAATATTGATGGATCA
1 AGCTCAATTTGTGATAATATTGATGGATCA
* *
80152083 AGCTTAATTTGTGATAATGTTGATGGATCA
1 AGCTCAATTTGTGATAATATTGATGGATCA
80152113 GGTTGTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (30 bp):
AGCTCAATTTGTGATAATATTGATGGATCA
Found at i:80161705 original size:46 final size:46
Alignment explanation
Indices: 80161638--80161812 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
80161628 TGTAACCCGC
*
80161638 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
80161684 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
80161734 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
80161777 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
80161813 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:80161757 original size:93 final size:93
Alignment explanation
Indices: 80161645--80161816 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
80161635 CGCCCATAAG
* * *
80161645 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80161710 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
80161738 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80161803 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
80161817 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:80167601 original size:58 final size:57
Alignment explanation
Indices: 80167528--80167636 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
80167518 TGAATGTGAC
* *
80167528 TGGGCCTAACTGGCCATATAAATGTGATTTGGGCCTAAT-GGACCATATACAGTTGATT
1 TGGGCCTAACTGGCCATATAAATATGA-TTGGGCCTAATAGG-CCAGATACAGTTGATT
* *
80167586 TGGGCCTAA-TGGGCCATATGAATATGATTGGGCTTAATAGGCCAGATACAG
1 TGGGCCTAACT-GGCCATATAAATATGATTGGGCCTAATAGGCCAGATACAG
80167637 GTATGTGAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
57 20 0.44
58 25 0.56
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACTGGCCATATAAATATGATTGGGCCTAATAGGCCAGATACAGTTGATT
Found at i:80167628 original size:28 final size:28
Alignment explanation
Indices: 80167516--80167629 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 28
80167506 TGAGCATGAT
*
80167516 TATGAATGTGA-CTGGGCCTAACTGGCCA
1 TATGAATGTGATTTGGGCCTAA-TGGCCA
*
80167544 TATAAATGTGATTTGGGCCTAATGGACCA
1 TATGAATGTGATTTGGGCCTAATGG-CCA
80167573 TAT-ACA-GTTGATTTGGGCCTAATGGGCCA
1 TATGA-ATG-TGATTTGGGCCTAAT-GGCCA
* *
80167602 TATGAATATGA-TTGGGCTTAATAGGCCA
1 TATGAATGTGATTTGGGCCTAAT-GGCCA
80167630 GATACAGGTA
Statistics
Matches: 74, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
28 30 0.41
29 41 0.55
30 3 0.04
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (28 bp):
TATGAATGTGATTTGGGCCTAATGGCCA
Found at i:80173710 original size:17 final size:17
Alignment explanation
Indices: 80173684--80173719 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
80173674 ATCCTATGTT
*
80173684 TTATATATCAATCAAAA
1 TTATAAATCAATCAAAA
*
80173701 TTATAAATCAATTAAAA
1 TTATAAATCAATCAAAA
80173718 TT
1 TT
80173720 TATCCTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (17 bp):
TTATAAATCAATCAAAA
Found at i:80174219 original size:7 final size:7
Alignment explanation
Indices: 80174207--80174253 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 7
80174197 TAAAATCTGC
80174207 TAAAAAA
1 TAAAAAA
80174214 T-AAAAA
1 TAAAAAA
80174220 T-AAAAA
1 TAAAAAA
*
80174226 TAAAAAT
1 TAAAAAA
80174233 TAAAAACA
1 TAAAAA-A
80174241 TAAAATAA
1 TAAAA-AA
80174249 TAAAA
1 TAAAA
80174254 TAAATATTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 12 0.34
7 11 0.31
8 11 0.31
9 1 0.03
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (7 bp):
TAAAAAA
Found at i:80174225 original size:13 final size:13
Alignment explanation
Indices: 80174207--80174257 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 13
80174197 TAAAATCTGC
80174207 TAAAAAATAAAAA
1 TAAAAAATAAAAA
80174220 T-AAAAATAAAAA
1 TAAAAAATAAAAA
80174232 TTAAAAACAT-AAAA
1 -TAAAAA-ATAAAAA
80174246 TAATAAAATAAA
1 TAA-AAAATAAA
80174258 TATTTCTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
12 11 0.33
13 7 0.21
14 13 0.39
15 2 0.06
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:80177881 original size:13 final size:13
Alignment explanation
Indices: 80177824--80177875 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
80177814 ATAATAATAT
80177824 AATAAAATAAAG-
1 AATAAAATAAAGA
*
80177836 AAT-GAATAAAAGA
1 AATAAAAT-AAAGA
80177849 AATAAAATAAAGA
1 AATAAAATAAAGA
*
80177862 AATAAAAGAAAGA
1 AATAAAATAAAGA
80177875 A
1 A
80177876 TGAAAAACGA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 3 0.09
12 7 0.21
13 21 0.62
14 3 0.09
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.13
Consensus pattern (13 bp):
AATAAAATAAAGA
Found at i:80183582 original size:29 final size:29
Alignment explanation
Indices: 80183546--80183630 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
80183536 TGAATGTGAC
80183546 TGGGCCTAATGGGCCATATACAGGTGAT-T
1 TGGGCCTAATGGGCCATATACAGGT-ATGT
80183575 TGGGCCTAATGGGCCATATGA-A--TATGT
1 TGGGCCTAATGGGCCATAT-ACAGGTATGT
* *
80183602 TGGGCTTAATGGGCCAGATACAGGTATGT
1 TGGGCCTAATGGGCCATATACAGGTATGT
80183631 GAAATTGTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
26 3 0.06
27 20 0.41
29 25 0.51
30 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATACAGGTATGT
Found at i:80198566 original size:46 final size:46
Alignment explanation
Indices: 80198499--80198763 Score: 186
Period size: 46 Copynumber: 5.7 Consensus size: 46
80198489 TGTAACCCGC
** *
80198499 CCATAAGCAAACTCGGACTCAACTCAACGAGTTCGTACGTTCATAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGTACGTTCACAT
* * *
80198545 CCATAAGTGAAGTCGGACTCAACTCAACGAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G-T-AC--GTTCACAT
* * * * *
80198595 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGTACGTTCACAT
* * *
80198638 CCATAAGTGAACTTGGACTCAACTCAACGAGCTTGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCG-T-AC--GTTCACAT
* * * * * * *
80198688 -C-TCA-CGAACTCGAACCCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGTACGTTCACAT
*
80198731 CCAAAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
80198764 AGGATGCCCA
Statistics
Matches: 164, Mismatches: 37, Indels: 36
0.69 0.16 0.15
Matches are distributed among these distances:
42 5 0.03
43 6 0.04
44 4 0.02
45 3 0.02
46 78 0.48
47 47 0.29
48 5 0.03
49 4 0.02
50 6 0.04
51 6 0.04
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGTACGTTCACAT
Found at i:80198710 original size:47 final size:47
Alignment explanation
Indices: 80198557--80198715 Score: 150
Period size: 47 Copynumber: 3.4 Consensus size: 47
80198547 ATAAGTGAAG
**
80198557 TCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCACGAAC
1 TCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCACGAAC
* * * *
80198604 TCGGACTCAACTCAATGAG-TTCGGA---C--GTTCGCATCCATAAGTGAAC
1 TCGGACTCAACTCAACGAGCTT-GGATGCCTAGTT-ACAT-C-TCA-CGAAC
*
80198650 TTGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCACGAAC
1 TCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCACGAAC
* *
80198697 TCGAACCCAACTCAACGAG
1 TCGGACTCAACTCAACGAG
80198716 TTCGGACATT
Statistics
Matches: 87, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 25 0.29
47 42 0.48
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (47 bp):
TCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCACGAAC
Found at i:80198769 original size:93 final size:94
Alignment explanation
Indices: 80198508--80198771 Score: 408
Period size: 93 Copynumber: 2.8 Consensus size: 94
80198498 CCCATAAGCA
* ** *
80198508 AACTCGGACTCAACTCAACGAGTTCGTACGTTCATATCCATAAGTGAAGTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
80198573 GAGCTCA-GATGCCTAGTTACATCTCACG
66 GAGCTTAGGATGCCTAGTTACATCTCACG
* *
80198601 AACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTTGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
80198666 GAGCTT-GGATGCCTAGTTACATCTCACG
66 GAGCTTAGGATGCCTAGTTACATCTCACG
* * * *
80198694 AACTCGAACCCAACTCAACGAGTTCGGACATTCGCATCCAAAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
80198759 GAG-TTAGGATGCC
66 GAGCTTAGGATGCC
80198772 CAAATATCCA
Statistics
Matches: 156, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
92 2 0.01
93 154 0.99
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (94 bp):
AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTTAGGATGCCTAGTTACATCTCACG
Found at i:80209568 original size:41 final size:41
Alignment explanation
Indices: 80209523--80209604 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
80209513 ATAAGAACAA
*
80209523 ACCACAGAGAGTAAGAACGCAAGAGGGAGAGAAATTTGAGT
1 ACCACAGAGAGTAAGAACGCAAAAGGGAGAGAAATTTGAGT
80209564 ACCACAGAGAGTAAGAACGCAAAAGGGAGAGAAATTTGAGT
1 ACCACAGAGAGTAAGAACGCAAAAGGGAGAGAAATTTGAGT
80209605 GAATGCTCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.45, C:0.12, G:0.30, T:0.12
Consensus pattern (41 bp):
ACCACAGAGAGTAAGAACGCAAAAGGGAGAGAAATTTGAGT
Found at i:80209784 original size:22 final size:21
Alignment explanation
Indices: 80209754--80209819 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
80209744 TACAAATTAA
80209754 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
80209776 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
80209797 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
80209816 ATCT
1 ATCT
80209820 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:80209806 original size:19 final size:19
Alignment explanation
Indices: 80209771--80209849 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
80209761 AGATTACAAG
80209771 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
80209792 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
80209811 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
80209828 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
80209847 ATC
1 ATC
80209850 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:80209813 original size:14 final size:15
Alignment explanation
Indices: 80209793--80209849 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
80209783 AGATTGCATA
80209793 TCATATCTAAGATTG
1 TCATATCTAAGATTG
80209808 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
80209827 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
80209844 -CATATC
1 TCATATC
80209850 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:80209835 original size:36 final size:39
Alignment explanation
Indices: 80209771--80209849 Score: 128
Period size: 36 Copynumber: 2.1 Consensus size: 39
80209761 AGATTACAAG
80209771 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
80209811 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
80209847 ATC
1 ATC
80209850 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:80210522 original size:87 final size:89
Alignment explanation
Indices: 80210430--80210634 Score: 263
Period size: 87 Copynumber: 2.3 Consensus size: 89
80210420 GCACAGGAAT
* * * *
80210430 GTCAGATCTGCTATGTCTTCAATCTGTTCCCTGTAAACACAGGGATGCCAAATCATCTTGGATCT
1 GTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTAAACAAAAGGATGCCAAATCATCTTGGATCT
* *
80210495 GCTTCAGCGT--AAACAC-CTGAAG
66 GCTTCAACGTGAAAATACTC-GAAG
* * * *
80210517 GTCAGATCTGTTATGTCTTCGATTTGCTCCTTGTAAACAAAAGGATGCTAAATCATCTTGGATCT
1 GTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTAAACAAAAGGATGCCAAATCATCTTGGATCT
* * *
80210582 GCTTTAATGTGAAAATATTCGAAG
66 GCTTCAACGTGAAAATACTCGAAG
80210606 GTCAGATCTGCTATGTCTTCGATCTGCTC
1 GTCAGATCTGCTATGTCTTCGATCTGCTC
80210635 TCCGTCGAAT
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
87 64 0.64
89 35 0.35
90 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (89 bp):
GTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTAAACAAAAGGATGCCAAATCATCTTGGATCT
GCTTCAACGTGAAAATACTCGAAG
Found at i:80210850 original size:84 final size:84
Alignment explanation
Indices: 80210755--80211201 Score: 610
Period size: 84 Copynumber: 5.4 Consensus size: 84
80210745 TGCTATCCTT
* *
80210755 TAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGCA-TCTTCGATCTACTCCACTACTGCTTAG
1 TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCTTCGATCTGCTCCACTACTGCTTAG
80210819 GGAGATAAGATCTGCAAATG
65 GGAGATAAGATCTGCAAATG
* * * *
80210839 TAACCTGTTACCCAATTGCTTAGGGGATTAAGGCGAGTCGTCATCGATCTGCTCCGCTACTACTT
1 TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTT
*
80210904 AGGGAGATAAGATTTGC----G
63 AGGGAGATAAGATCTGCAAATG
* * * *
80210922 -ACCCTGTTACTCTACTGCTTAGGAGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGG
1 TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGG
80210986 GAGATAAGATCTG----TG
66 GAGATAAGATCTGCAAATG
* * *
80211001 -AACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCCACTACTGCTTAGA
1 TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGG
*
80211065 GAGATAAGATCTGCAAATT
66 GAGATAAGATCTGCAAATG
* *
80211084 TAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCTCCACTACTGCTTAGG
1 TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGG
*
80211149 GAGATAAGATCTGCAAATT
66 GAGATAAGATCTGCAAATG
*
80211168 TAACCTGTTACCCTACTGCTTAAGGGATTAAGGC
1 TAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
80211202 ACTGAATTTT
Statistics
Matches: 321, Mismatches: 32, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
79 105 0.33
81 1 0.00
82 33 0.10
83 3 0.01
84 143 0.45
85 1 0.00
87 35 0.11
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGCAAATG
Found at i:80210982 original size:41 final size:40
Alignment explanation
Indices: 80210933--80211069 Score: 117
Period size: 41 Copynumber: 3.4 Consensus size: 40
80210923 CCCTGTTACT
80210933 CTACTGCTTAGGAGATTAAGGCGAGTCTTCGATCTGCTCTA
1 CTACTGCTTAGGAGATTAAGGCGAGTCTT-GATCTGCTCTA
*
80210974 CTACTGCTTAGGGAGA-TAA---GA-TCTGTGAACCTG-T-TA
1 CTACTGCTTA-GGAGATTAAGGCGAGTCT-TG-ATCTGCTCTA
* * *
80211010 CCCTACTACTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCCA
1 --CTACTGCTTAGGAGATTAAGGCGAGTC-TTGATCTGCTCTA
80211053 CTACTGCTTAGAGAGAT
1 CTACTGCTTAG-GAGAT
80211070 AAGATCTGCA
Statistics
Matches: 75, Mismatches: 7, Indels: 27
0.69 0.06 0.25
Matches are distributed among these distances:
36 2 0.03
37 9 0.12
38 19 0.25
41 29 0.39
42 14 0.19
43 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (40 bp):
CTACTGCTTAGGAGATTAAGGCGAGTCTTGATCTGCTCTA
Found at i:80211187 original size:43 final size:43
Alignment explanation
Indices: 80211053--80211194 Score: 134
Period size: 43 Copynumber: 3.3 Consensus size: 43
80211043 ATCTGCTCCA
*
80211053 CTACTGCTTAGAGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
* * * * * *
80211096 CTACCGCTTAGGG-GATTAA-A---GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
80211136 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
80211180 CTACTGCTTAAGGGA
1 CTACTGCTT-AGGGA
80211195 TTAAGGCACT
Statistics
Matches: 75, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
39 4 0.05
40 4 0.05
41 20 0.27
42 6 0.08
43 28 0.37
44 9 0.12
45 4 0.05
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
Found at i:80212168 original size:6 final size:6
Alignment explanation
Indices: 80212152--80212210 Score: 50
Period size: 6 Copynumber: 9.8 Consensus size: 6
80212142 CCTCTCCATT
* * *
80212152 TTTTTC TTTTTTC TTTTTA TTTTAT- TTTTTC CTTTTA TTTTTC TTTTT-
1 TTTTTC -TTTTTC TTTTTC TTTT-TC TTTTTC TTTTTC TTTTTC TTTTTC
*
80212200 TTTTCC TTTTT
1 TTTTTC TTTTT
80212211 TTTGAAATAG
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
5 5 0.12
6 30 0.71
7 7 0.17
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:80212198 original size:18 final size:18
Alignment explanation
Indices: 80212152--80212199 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
80212142 CCTCTCCATT
*
80212152 TTTTTCTTTTTTCTTTTTA
1 TTTTTC-TTTTTCCTTTTA
80212171 TTTTAT-TTTTTCCTTTTA
1 TTTT-TCTTTTTCCTTTTA
80212189 TTTTTCTTTTT
1 TTTTTCTTTTT
80212200 TTTTCCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 1 0.04
18 20 0.77
19 4 0.15
20 1 0.04
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTCTTTTTCCTTTTA
Found at i:80212208 original size:11 final size:11
Alignment explanation
Indices: 80212176--80212213 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
80212166 TTTTATTTTA
80212176 TTTTTTCCTTT
1 TTTTTTCCTTT
80212187 TATTTTT-CTTT
1 T-TTTTTCCTTT
80212198 TTTTTTCCTTT
1 TTTTTTCCTTT
80212209 TTTTT
1 TTTTT
80212214 GAAATAGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 5 0.20
11 15 0.60
12 5 0.20
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTCCTTT
Found at i:80217845 original size:22 final size:21
Alignment explanation
Indices: 80217815--80217861 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
80217805 TACAAATTAA
80217815 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
80217837 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
80217858 ATCT
1 ATCT
80217862 AAAATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:80217870 original size:19 final size:19
Alignment explanation
Indices: 80217832--80217929 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
80217822 AGATTACAAG
80217832 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
80217853 ATCATATCTAAAATTGCAT
1 ATCATATCTAAGATTGCAT
*
80217872 ATGATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
80217889 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
80217908 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
80217927 ATC
1 ATC
80217930 CTTATCGTAT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 16 0.23
19 46 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:80217894 original size:36 final size:37
Alignment explanation
Indices: 80217832--80217929 Score: 135
Period size: 36 Copynumber: 2.6 Consensus size: 37
80217822 AGATTACAAG
80217832 ATCATATCTTCAAGATTGCATATCATATCTAAAATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAAATTGCAT
* *
80217872 ATGATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAAATTGCAT
80217908 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
80217930 CTTATCGTAT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
36 34 0.64
38 11 0.21
39 1 0.02
40 7 0.13
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAAATTGCAT
Found at i:80217935 original size:25 final size:25
Alignment explanation
Indices: 80217907--80217958 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
80217897 TAAGATTGCA
80217907 TATCATATCTAAGATTGCATATCCT
1 TATCATATCTAAGATTGCATATCCT
* *
80217932 TATCGTATCTAAGATTGCATATTCT
1 TATCATATCTAAGATTGCATATCCT
80217957 TA
1 TA
80217959 AAGATTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (25 bp):
TATCATATCTAAGATTGCATATCCT
Found at i:80224873 original size:27 final size:27
Alignment explanation
Indices: 80224749--80224873 Score: 112
Period size: 27 Copynumber: 4.7 Consensus size: 27
80224739 TTAGTTTACC
** *
80224749 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACCCAAATACCCTCAGTTTGTA
* * *
80224775 AAATTA-CCAAAGTACCCCCGGTTTATA
1 AAATTACCCAAA-TACCCTCAGTTTGTA
*
80224802 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACCCAAATACCCTCAG-TTTGTA
* *
80224829 AAATTACCAAAATACCCTCAGTTTGCA
1 AAATTACCCAAATACCCTCAGTTTGTA
**
80224856 AAATTACTGAAATACCCT
1 AAATTACCCAAATACCCT
80224874 TGACATGTAA
Statistics
Matches: 82, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
25 3 0.04
26 15 0.18
27 58 0.71
28 6 0.07
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACCCAAATACCCTCAGTTTGTA
Found at i:80224917 original size:54 final size:54
Alignment explanation
Indices: 80224749--80224918 Score: 157
Period size: 54 Copynumber: 3.2 Consensus size: 54
80224739 TTAGTTTACC
* ** * * *
80224749 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACTGAAATACCCTCGACATGTAAAATTACCAAAGAACCCTCGATTTATA
** * ** **
80224802 AAATTACCCAAATATCCTCGATTTGTAAAATTACCAAA-ATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGACATGTAAAATTACCAAAGA-ACCCTCGA-TTTATA
* *
80224856 AAATTACTGAAATACCCTTGACATGTAAAATTATCAAAGAACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGACATGTAAAATTACCAAAGAACCCTCGATTTATA
*
80224910 GAATTACTG
1 AAATTACTG
80224919 TTTTACCCTT
Statistics
Matches: 92, Mismatches: 20, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
53 14 0.15
54 76 0.83
55 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGACATGTAAAATTACCAAAGAACCCTCGATTTATA
Found at i:80224926 original size:27 final size:27
Alignment explanation
Indices: 80224896--80225340 Score: 523
Period size: 27 Copynumber: 16.5 Consensus size: 27
80224886 TTATCAAAGA
* *
80224896 ACCCTCGATTTATAGAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
* * *
80224923 ACCCTTGATTTATAAAATTATTGTTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
* * *
80224950 ACCCTCGATTTATAGAATTACTATTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
* *
80224977 ACCCTCGATTTGCAGAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
**
80225004 ACCCTTTATTTACAAAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
*
80225031 AACCTCGATTTACAAAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
* *
80225058 ACCCTCGATTTACAGAATTACTATTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
* * * ** *
80225085 ACCCTCAATTTATAGAATTACCCTCTT
1 ACCCTCGATTTACAAAATTACTGTTTT
*
80225112 ACCCTCGATTTACAAAATTACTATTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
** * * *
80225139 ACCCTTAATTTATAGAATTA-TCATTTT
1 ACCCTCGATTTACAAAATTACT-GTTTT
*
80225166 ACCCTCGATTTACAAAATTACTATTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
* * * **
80225193 ACCCTCAATTTATAGAATTACCATTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
80225220 ACCCTCGATTTACAAAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
80225247 ACCCTCGATTTACAAAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
* * *
80225274 ACCCTCAATTTATAGAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
* *
80225301 ACCCTCGATTTACAAAATTATTATTTT
1 ACCCTCGATTTACAAAATTACTGTTTT
*
80225328 ACCCTCAATTTAC
1 ACCCTCGATTTAC
80225341 GTTTTACCCT
Statistics
Matches: 359, Mismatches: 57, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 357 0.99
28 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.43
Consensus pattern (27 bp):
ACCCTCGATTTACAAAATTACTGTTTT
Found at i:80224926 original size:54 final size:54
Alignment explanation
Indices: 80224868--80224981 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
80224858 ATTACTGAAA
* *
80224868 TACCCTTGACATGTAAAATTATCAAAGAACCCTCGATTTATAGAATTACTGTTT
1 TACCCTTGACATATAAAATTATCAAAGAACCCTCGATTTATAGAATTACTATTT
** ******
80224922 TACCCTTGATTTATAAAATTATTGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGACATATAAAATTATCAAAGAACCCTCGATTTATAGAATTACTATTT
80224976 TACCCT
1 TACCCT
80224982 CGATTTGCAG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTTGACATATAAAATTATCAAAGAACCCTCGATTTATAGAATTACTATTT
Found at i:80225363 original size:45 final size:46
Alignment explanation
Indices: 80225291--80225377 Score: 133
Period size: 45 Copynumber: 1.9 Consensus size: 46
80225281 ATTTATAGAA
**
80225291 TTACTGTTTTACCCTCGATTTACAAAATTATTATTTTACCCTCAAT
1 TTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAAT
80225337 TTAC-GTTTTACCCTCGATTT-CTAAAATTACCATTTTACCCT
1 TTACTGTTTTACCCTCGATTTAC-AAAATTACCATTTTACCCT
80225378 TAGGGTGTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
44 1 0.03
45 33 0.87
46 4 0.11
ACGTcount: A:0.26, C:0.24, G:0.05, T:0.45
Consensus pattern (46 bp):
TTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAAT
Found at i:80225920 original size:6 final size:6
Alignment explanation
Indices: 80225881--80226011 Score: 63
Period size: 6 Copynumber: 21.3 Consensus size: 6
80225871 TTGCATTCAC
* * *
80225881 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * * *
80225930 -TCACCTA ATTTTG ATTCTG ATTCTG ATTGTG ATTCAG -TCACCTG ATCCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
80225980 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
80226012 AATGTTTCTT
Statistics
Matches: 92, Mismatches: 22, Indels: 22
0.68 0.16 0.16
Matches are distributed among these distances:
5 5 0.05
6 76 0.83
7 8 0.09
8 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:80225981 original size:31 final size:31
Alignment explanation
Indices: 80225881--80225990 Score: 103
Period size: 31 Copynumber: 3.4 Consensus size: 31
80225871 TTGCATTCAC
* *
80225881 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
* *
80225912 ATTCTGATTCTAATTCTGTCACCTAATTTTGATTCTG
1 ATTCTGATTCTGATTCTGTCACC------TGATACTG
* * *
80225949 ATTCTGATTGTGATTCAGTCACCTGATCCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
80225980 ATTCTGATTCT
1 ATTCTGATTCT
80225991 CATTTTGATT
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
31 37 0.58
37 27 0.42
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.46
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:80226000 original size:37 final size:37
Alignment explanation
Indices: 80225902--80226001 Score: 119
Period size: 37 Copynumber: 2.7 Consensus size: 37
80225892 GATTCTGTTA
* * *
80225902 CCTGATACTGATTCTGATTCTAATTCTGTCACCTAAT
1 CCTGATTCTGATTCTGATTCTGATTCAGTCACCTAAT
** * *
80225939 TTTGATTCTGATTCTGATTGTGATTCAGTCACCTGAT
1 CCTGATTCTGATTCTGATTCTGATTCAGTCACCTAAT
* *
80225976 CCTGATTCTGATTCTCATTTTGATTC
1 CCTGATTCTGATTCTGATTCTGATTC
80226002 TAGTTCTGAT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (37 bp):
CCTGATTCTGATTCTGATTCTGATTCAGTCACCTAAT
Found at i:80233625 original size:44 final size:43
Alignment explanation
Indices: 80233554--80233701 Score: 151
Period size: 44 Copynumber: 3.4 Consensus size: 43
80233544 TATGTGTTAT
* *
80233554 CGTGTAAGACCACGACTGGGACGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATTT-TGATTTA
* * *
80233598 CGTGTAAGACCAGGTCTGGCACATTGGCATCG-TATATGATTT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGAT-TTTGATTTA
* * *
80233640 TGTGTAAGACC-CTCTCTGGGACAGTGGCATCGATGTTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TTTGATTTA
*
80233683 CATGTAAGACCACGTCTGG
1 CGTGTAAGACCACGTCTGG
80233702 AATGTTGGCA
Statistics
Matches: 84, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
42 28 0.33
43 26 0.31
44 30 0.36
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTTTGATTTA
Found at i:80233711 original size:43 final size:42
Alignment explanation
Indices: 80233554--80233712 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
80233544 TATGTGTTAT
* *
80233554 CGTGTAAGACCACGACTGGGACGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCACGTCTGGAACGTTGGCATCGATTT-TGA-TTA
* * * * *
80233598 CGTGTAAGACCAGGTCTGGCACATTGGCATCG-TATATGATTT
1 CGTGTAAGACCACGTCTGGAACGTTGGCATCGAT-TTTGATTA
* * *
80233640 TGTGTAAGACC-CTCTCTGGGACAG-TGGCATCGATGTTTGATTA
1 CGTGTAAGACCAC-GTCTGGAAC-GTTGGCATCGAT-TTTGATTA
* *
80233683 CATGTAAGACCACGTCTGGAATGTTGGCAT
1 CGTGTAAGACCACGTCTGGAACGTTGGCAT
80233713 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 19, Indels: 13
0.74 0.16 0.11
Matches are distributed among these distances:
42 28 0.31
43 32 0.36
44 30 0.33
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGAACGTTGGCATCGATTTTGATTA
Found at i:80234612 original size:57 final size:57
Alignment explanation
Indices: 80234519--80234632 Score: 201
Period size: 57 Copynumber: 2.0 Consensus size: 57
80234509 TTTTTCCTAT
* * *
80234519 GTTTATAGATTTTTAGAGATCTGTTCAGATTTGAACTCGATGGGTACGTCATCACAC
1 GTTTATAGATTTTTAGAGATCTGCTCAGATTGGAACTCGATGGGGACGTCATCACAC
80234576 GTTTATAGATTTTTAGAGATCTGCTCAGATTGGAACTCGATGGGGACGTCATCACAC
1 GTTTATAGATTTTTAGAGATCTGCTCAGATTGGAACTCGATGGGGACGTCATCACAC
80234633 TATCCGATTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (57 bp):
GTTTATAGATTTTTAGAGATCTGCTCAGATTGGAACTCGATGGGGACGTCATCACAC
Found at i:80238870 original size:36 final size:36
Alignment explanation
Indices: 80238830--80238901 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
80238820 TATAAAAGTG
80238830 ACATTGTACGAGGTATCATGTGTGGCAGTTACCTAA
1 ACATTGTACGAGGTATCATGTGTGGCAGTTACCTAA
80238866 ACATTGTACGAGGTATCATGTGTGGCAGTTACCTAA
1 ACATTGTACGAGGTATCATGTGTGGCAGTTACCTAA
80238902 CTCCATTGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (36 bp):
ACATTGTACGAGGTATCATGTGTGGCAGTTACCTAA
Found at i:80240528 original size:43 final size:42
Alignment explanation
Indices: 80240378--80240536 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 42
80240368 TATGTGTTAT
*
80240378 CGTGTAAGACCACGTCTGGGA-TGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCACGTCTGGGACAG-TGGCATCGATTT-TGA-TTA
* * * * * *
80240422 CGTGTAAGACCACGTTTGGGATATTGCCATCG-TATATGATTT
1 CGTGTAAGACCACGTCTGGGACAGTGGCATCGAT-TTTGATTA
*
80240464 CGTGTAAGACC-CTGTCCGGGACAGTGGCATCGATGTTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACAGTGGCATCGAT-TTTGATTA
* * *
80240507 CATGTAAGACCACATCTGGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACAGTGGCAT
80240537 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 35 0.38
44 29 0.32
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACAGTGGCATCGATTTTGATTA
Found at i:80249500 original size:40 final size:40
Alignment explanation
Indices: 80249437--80249592 Score: 177
Period size: 40 Copynumber: 3.9 Consensus size: 40
80249427 TTGAATTCAT
* *
80249437 ATACGTGCCCCTATTTGTGCTTCGGTACCCCTAAATGCAC
1 ATACATGCCCCTATTTGTACTTCGGTACCCCTAAATGCAC
* *
80249477 ATACATGCCCCTGTTTGTACTTCGGTACCCTTAAATGCAC
1 ATACATGCCCCTATTTGTACTTCGGTACCCCTAAATGCAC
** * * *
80249517 ATAGGTTCCCCTATTTGTACTTTGGTACCCCTAAATGCGC
1 ATACATGCCCCTATTTGTACTTCGGTACCCCTAAATGCAC
** * * * *
80249557 ATACATGCCTTTGTTTATACTTTGGTAACCCTAAAT
1 ATACATGCCCCTATTTGTACTTCGGTACCCCTAAAT
80249593 CAAATAGTAT
Statistics
Matches: 97, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (40 bp):
ATACATGCCCCTATTTGTACTTCGGTACCCCTAAATGCAC
Found at i:80249578 original size:80 final size:80
Alignment explanation
Indices: 80249444--80249592 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 80
80249434 CATATACGTG
* *
80249444 CCCCTATTTGTGCTTCGGTACCCCTAAATGCACATACATGCCCCTGTTTGTACTTCGGT-ACCCT
1 CCCCTATTTGTACTTCGGTACCCCTAAATGCACATACATGCCCCTGTTTATACTTCGGTAACCC-
80249508 TAAATGCACATAGGTT
65 TAAATGCACATAGGTT
* * ** *
80249524 CCCCTATTTGTACTTTGGTACCCCTAAATGCGCATACATGCCTTTGTTTATACTTTGGTAACCCT
1 CCCCTATTTGTACTTCGGTACCCCTAAATGCACATACATGCCCCTGTTTATACTTCGGTAACCCT
80249589 AAAT
66 AAAT
80249593 CAAATAGTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 57 0.93
81 4 0.07
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (80 bp):
CCCCTATTTGTACTTCGGTACCCCTAAATGCACATACATGCCCCTGTTTATACTTCGGTAACCCT
AAATGCACATAGGTT
Found at i:80251621 original size:63 final size:63
Alignment explanation
Indices: 80251545--80251714 Score: 153
Period size: 63 Copynumber: 2.7 Consensus size: 63
80251535 CATGGCCTAC
* * ** *
80251545 ACACACACCCGTGTTACTAGCCCGTGTGACTCTAATTCCAAAATAGTGAGTTACACGGCCTGG
1 ACACACACCCGTGTCACTAGACCAAGTGACTCTAATTCCAAAATAGTGAGTTACACGACCTGG
* * * * * * *
80251608 ACACACTCTCGTGTCCCTAGACCAAGTGTCTTTAATTCCAAAATTGTGAGTTACATGACCTGG
1 ACACACACCCGTGTCACTAGACCAAGTGACTCTAATTCCAAAATAGTGAGTTACACGACCTGG
* * * * *
80251671 ACACGCACCTAGTGTCCCT-GGCTCATGTGACTCTAATTCACAAA
1 ACACACACC-CGTGTCACTAGAC-CAAGTGACTCTAATTC-CAAA
80251715 CAGTAAGTCA
Statistics
Matches: 84, Mismatches: 20, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
63 59 0.70
64 21 0.25
65 4 0.05
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (63 bp):
ACACACACCCGTGTCACTAGACCAAGTGACTCTAATTCCAAAATAGTGAGTTACACGACCTGG
Found at i:80252347 original size:13 final size:12
Alignment explanation
Indices: 80252321--80252355 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
80252311 AAGAAAAGGG
80252321 GAAAAAGAAAAA
1 GAAAAAGAAAAA
80252333 GAAAAAGAAATAA
1 GAAAAAGAAA-AA
*
80252346 GAAACAGAAA
1 GAAAAAGAAA
80252356 CAAATAAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.77, C:0.03, G:0.17, T:0.03
Consensus pattern (12 bp):
GAAAAAGAAAAA
Found at i:80252357 original size:6 final size:6
Alignment explanation
Indices: 80252321--80252355 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
80252311 AAGAAAAGGG
*
80252321 GAAAAA GAAAAA GAAAAA GAAATAA GAAACA GAAA
1 GAAAAA GAAAAA GAAAAA GAAA-AA GAAAAA GAAA
80252356 CAAATAAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.77, C:0.03, G:0.17, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:80253069 original size:24 final size:25
Alignment explanation
Indices: 80253042--80253088 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
80253032 CGACTAGTTG
*
80253042 GTTGACGAGGAAT-CCAAAGCGACA
1 GTTGACGAAGAATACCAAAGCGACA
* *
80253066 GTTGATGAAGATTACCAAAGCGA
1 GTTGACGAAGAATACCAAAGCGA
80253089 GCTAATCACC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.38, C:0.17, G:0.28, T:0.17
Consensus pattern (25 bp):
GTTGACGAAGAATACCAAAGCGACA
Found at i:80275851 original size:10 final size:10
Alignment explanation
Indices: 80275836--80275862 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
80275826 GTTACACTGT
80275836 TAATGGCAAC
1 TAATGGCAAC
80275846 TAATGGCAAC
1 TAATGGCAAC
80275856 TAATGGC
1 TAATGGC
80275863 TCAGTAGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (10 bp):
TAATGGCAAC
Found at i:80279424 original size:35 final size:35
Alignment explanation
Indices: 80279384--80279458 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
80279374 CTATACCCAT
80279384 ACTTAATGAGGCTAATTTCAATGAATGGAAAAGGC
1 ACTTAATGAGGCTAATTTCAATGAATGGAAAAGGC
80279419 ACTTAATGAGGCTAATTTCAATGAATGGAAAAGGC
1 ACTTAATGAGGCTAATTTCAATGAATGGAAAAGGC
80279454 ACTTA
1 ACTTA
80279459 CTTATAGTGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (35 bp):
ACTTAATGAGGCTAATTTCAATGAATGGAAAAGGC
Found at i:80288375 original size:3 final size:3
Alignment explanation
Indices: 80288291--80288355 Score: 60
Period size: 3 Copynumber: 21.7 Consensus size: 3
80288281 TTGTTAAACA
* * * * * *
80288291 TAT TTT TAT TAT T-G TAT GAT TAT TAAA TAT TAT AAG TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
80288336 TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
80288356 AAGATATAAG
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
2 1 0.02
3 45 0.94
4 2 0.04
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:80299398 original size:79 final size:81
Alignment explanation
Indices: 80299262--80299446 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
80299252 TTGAATGATG
*
80299262 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
80299326 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
80299341 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
80299403 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
80299421 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80299447 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:80299460 original size:40 final size:40
Alignment explanation
Indices: 80299263--80299446 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
80299253 TGAATGATGT
* * * *
80299263 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
80299303 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
80299343 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80299381 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80299422 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80299447 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:80299468 original size:79 final size:79
Alignment explanation
Indices: 80299263--80299479 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
80299253 TGAATGATGT
** * * * **
80299263 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
80299326 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
80299343 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
80299408 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
80299422 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
80299480 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:80301478 original size:67 final size:67
Alignment explanation
Indices: 80301369--80301503 Score: 252
Period size: 67 Copynumber: 2.0 Consensus size: 67
80301359 GAGGCTTGGT
*
80301369 TAGAATATCTATTGGCTGATCTTCAGTGCTACAATAATCCAAAGTCACTTACTCTATTCAACTTC
1 TAGAATATCTATTGGCTGATCTTCAGTGCTACAATAAACCAAAGTCACTTACTCTATTCAACTTC
80301434 TC
66 TC
*
80301436 TAGAATATCTATTGGCTGATCTTCGGTGCTACAATAAACCAAAGTCACTTACTCTATTCAACTTC
1 TAGAATATCTATTGGCTGATCTTCAGTGCTACAATAAACCAAAGTCACTTACTCTATTCAACTTC
80301501 TC
66 TC
80301503 T
1 T
80301504 CACAAACTGA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.36
Consensus pattern (67 bp):
TAGAATATCTATTGGCTGATCTTCAGTGCTACAATAAACCAAAGTCACTTACTCTATTCAACTTC
TC
Found at i:80306154 original size:109 final size:108
Alignment explanation
Indices: 80306033--80306400 Score: 470
Period size: 109 Copynumber: 3.4 Consensus size: 108
80306023 TTATACTTGG
* ** * * **
80306033 CTGCCATAGCATCTTTCATCTATGGTCTTACACTGTATACCTTATATTTTGTACCATGCTACCAT
1 CTGCCATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACCATGTTGTCAT
*
80306098 GGCATCTTTCATACATGGTCTTACACTACATACCTCATACTAGA
66 GGCATCTTTCAT-CATGGTCTTACACTACATACCTCATACCAGA
* * *
80306142 TTGCCATAGCATCTTTCATCTATGATCTTACGCCATATACCTTATACCTTGT-CCGATGTTGTCA
1 CTGCCATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACC-ATGTTGTCA
* **
80306206 TGGCATCTTTCATCAATGGTCTTACGCTACGCACCTCATACCAGA
65 TGGCATCTTTCATC-ATGGTCTTACACTACATACCTCATACCAGA
* * * *
80306251 CTGCCATAGCGTCTTTCATCTATGGTCTTATGCCATATGCCTTATATCTTGTATCATGTTGTCAT
1 CTGCCATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACCATGTTGTCAT
* * *
80306316 AGCCTCTTTCATCCATGGTCTTACACTACATACAC-CATACCAAA
66 GGCATCTTTCAT-CATGGTCTTACACTACATAC-CTCATACCAGA
* *
80306360 CTGCCATAGCATCTTTTATCTATGGTTTTACGCCATATACC
1 CTGCCATAGCATCTTTCATCTATGGTCTTACGCCATATACC
80306401 GTTGTCACAG
Statistics
Matches: 222, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
108 3 0.01
109 216 0.97
110 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.36
Consensus pattern (108 bp):
CTGCCATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACCATGTTGTCAT
GGCATCTTTCATCATGGTCTTACACTACATACCTCATACCAGA
Found at i:80306182 original size:51 final size:51
Alignment explanation
Indices: 80306094--80306400 Score: 168
Period size: 51 Copynumber: 5.7 Consensus size: 51
80306084 TACCATGCTA
* * *
80306094 CCATGGCATCTTTCATAC-ATGGTCTTACACTACATACCTCATACTAGATTG
1 CCATAGCATCTTTCAT-CTATGGTCTTACGCCACATACCTCATACTAGATTG
* * * *
80306145 CCATAGCATCTTTCATCTATGATCTTACGCCATATACCTTATACCTTGTCCGATGTTG
1 CCATAGCATCTTTCATCTATGGTCTTACGCCACATACCTCATA-C---T-AGA--TTG
* * * * ** * *
80306203 TCATGGCATCTTTCATCAATGGTCTTACGCTACGCACCTCATACCAGACTG
1 CCATAGCATCTTTCATCTATGGTCTTACGCCACATACCTCATACTAGATTG
* * * * * *
80306254 CCATAGCGTCTTTCATCTATGGTCTTATGCCATATGCCTTATATCTTGTATCATGTTG
1 CCATAGCATCTTTCATCTATGGTCTTACGCCACATACCTCATA-C---TA-GA--TTG
* * * * * * * *
80306312 TCATAGCCTCTTTCATCCATGGTCTTACACTACATACAC-CATACCAAACTG
1 CCATAGCATCTTTCATCTATGGTCTTACGCCACATAC-CTCATACTAGATTG
* * *
80306363 CCATAGCATCTTTTATCTATGGTTTTACGCCATATACC
1 CCATAGCATCTTTCATCTATGGTCTTACGCCACATACC
80306401 GTTGTCACAG
Statistics
Matches: 187, Mismatches: 53, Indels: 33
0.68 0.19 0.12
Matches are distributed among these distances:
50 2 0.01
51 100 0.53
52 2 0.01
53 3 0.02
54 1 0.01
55 2 0.01
56 3 0.02
57 2 0.01
58 71 0.38
59 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.36
Consensus pattern (51 bp):
CCATAGCATCTTTCATCTATGGTCTTACGCCACATACCTCATACTAGATTG
Found at i:80306898 original size:27 final size:27
Alignment explanation
Indices: 80306792--80306890 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
80306782 TCGCCAGGTA
*
80306792 AATTGTGAACTAGGGGTTTGCTC-GTTG
1 AATTGTAAACTAGGGGTTTGC-CAGTTG
*
80306819 AATTGTAAACTGGGGGTTTGCCAGTTG
1 AATTGTAAACTAGGGGTTTGCCAGTTG
*
80306846 AATTGTAAACTGGGGGTTTGCCAGTTG
1 AATTGTAAACTAGGGGTTTGCCAGTTG
* *
80306873 AATTATGAACTAGGGGTT
1 AATTGTAAACTAGGGGTT
80306891 CGCTAGTTAA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
26 1 0.02
27 65 0.98
ACGTcount: A:0.23, C:0.10, G:0.32, T:0.34
Consensus pattern (27 bp):
AATTGTAAACTAGGGGTTTGCCAGTTG
Found at i:80321102 original size:12 final size:12
Alignment explanation
Indices: 80321085--80321109 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80321075 TAGAACGCAT
80321085 TGGCCCGGTTGC
1 TGGCCCGGTTGC
80321097 TGGCCCGGTTGC
1 TGGCCCGGTTGC
80321109 T
1 T
80321110 TACAGGCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.40, T:0.28
Consensus pattern (12 bp):
TGGCCCGGTTGC
Found at i:80331706 original size:46 final size:47
Alignment explanation
Indices: 80331523--80331788 Score: 212
Period size: 47 Copynumber: 5.7 Consensus size: 47
80331513 TGGGTAAGGT
* *
80331523 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCAT-ATCTC-AA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTC-TCATCTCGAG
* * *
80331570 GTCGATACCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTA-
1 GCCGAT-GCATGTCCCAGACATGGTCTTACACTAG-CTCTCATCTCG-AG
* ** *
80331618 GCAGATGCATGTATCAAACAT-GTCTTACACTAGCT-T-ATGTCTCGAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCA--TCTCGAG
* * * *
80331664 GCCGATGCATGTCCCAGACAT-ATCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGAG
* * * *
80331710 GCTGATGCCATGTCCCAGACATGGTCTTACACTATCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTCGAG
80331758 GCCGATGCATGTCCC-GAACAT-GTCTTACACT
1 GCCGATGCATGTCCCAG-ACATGGTCTTACACT
80331789 TGCCAATAAT
Statistics
Matches: 177, Mismatches: 27, Indels: 31
0.75 0.11 0.13
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 71 0.40
47 75 0.42
48 26 0.15
49 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCGAG
Found at i:80331722 original size:93 final size:94
Alignment explanation
Indices: 80331541--80331743 Score: 218
Period size: 93 Copynumber: 2.2 Consensus size: 94
80331531 CATATCCCAG
* *
80331541 ACATGGTCTTACACTAGCTCATATCTCAAGTCGATACCATGTCCCAGACATGGTCTTACACTGAC
1 ACATGGTCTTACACTAGCTCATATCTCAAGCCGATACCATGTCCCAGACATGATCTTACACTGAC
* *
80331606 TATCATCTCGTAGCAGATGCATGTATCAA
66 TATCATCTCATAGCAGATGCATGTACCAA
* * * *
80331635 ACAT-GTCTTACACTAGCTTATGTCTCGAGGCCGAT-GCATGTCCCAGACAT-ATCTTACACT-A
1 ACATGGTCTTACACTAGCTCATATCTC-AAGCCGATACCATGTCCCAGACATGATCTTACACTGA
* * * * *
80331696 GCTCTCGTCTCA-ATGCTGATGCCATGTCCCAG
65 -CTATCATCTCATA-GCAGATG-CATGTACCAA
80331728 ACATGGTCTTACACTA
1 ACATGGTCTTACACTA
80331744 TCTCTCATAA
Statistics
Matches: 91, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
91 2 0.02
92 23 0.25
93 45 0.49
94 21 0.23
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (94 bp):
ACATGGTCTTACACTAGCTCATATCTCAAGCCGATACCATGTCCCAGACATGATCTTACACTGAC
TATCATCTCATAGCAGATGCATGTACCAA
Found at i:80331787 original size:140 final size:141
Alignment explanation
Indices: 80331523--80331788 Score: 346
Period size: 140 Copynumber: 1.9 Consensus size: 141
80331513 TGGGTAAGGT
*
80331523 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATACCATGTCCCAG
1 GCCGATGCCATATCCCAGACATGATCTTACACTAGCTCATATCTCAAGTCGATACCATGTCCCAG
* *
80331588 ACATGGTCTTACACTGACTATCATCTCGTAGCAGATGCATGTATCAAACATGTCTTACACTAGCT
66 ACATGGTCTTACACTGACTATCATATCGTAGCAGATGCATGTACCAAACATGTCTTACACTAGCT
80331653 TATGTCTCGAG
131 TATGTCTCGAG
* * *
80331664 GCCGATG-CATGTCCCAGACAT-ATCTTACACTAGCTC-TCGTCTCAA-TGCTGATGCCATGTCC
1 GCCGATGCCATATCCCAGACATGATCTTACACTAGCTCAT-ATCTCAAGT-C-GATACCATGTCC
* * * * *
80331725 CAGACATGGTCTTACACT-ATCTCTCATAAT-GTGGCCGATGCATGTCCCGAACATGTCTTACAC
63 CAGACATGGTCTTACACTGA-CTATCAT-ATCGTAGCAGATGCATGTACCAAACATGTCTTACAC
80331788 T
126 T
80331789 TGCCAATAAT
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
138 2 0.02
139 22 0.20
140 77 0.71
141 8 0.07
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (141 bp):
GCCGATGCCATATCCCAGACATGATCTTACACTAGCTCATATCTCAAGTCGATACCATGTCCCAG
ACATGGTCTTACACTGACTATCATATCGTAGCAGATGCATGTACCAAACATGTCTTACACTAGCT
TATGTCTCGAG
Found at i:80334109 original size:47 final size:47
Alignment explanation
Indices: 80334040--80334208 Score: 206
Period size: 47 Copynumber: 3.6 Consensus size: 47
80334030 GATAAGGTGC
*
80334040 CGATGGCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGT
* * *
80334087 CGATGCCATGTTCCAGACATGGTCTTACACT-GACT-ACATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCACATCTC-AAGT
*
80334134 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTA-GTCTCAA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-ACATCTCAAGT
80334178 ACCGATGCCATGTCCCAGACATGGTCTTACA
1 --CGATGCCATGTCCCAGACATGGTCTTACA
80334209 TTGACTCTCA
Statistics
Matches: 105, Mismatches: 8, Indels: 17
0.81 0.06 0.13
Matches are distributed among these distances:
45 13 0.12
46 31 0.30
47 53 0.50
48 8 0.08
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGT
Found at i:80334204 original size:93 final size:93
Alignment explanation
Indices: 80334038--80334259 Score: 299
Period size: 93 Copynumber: 2.4 Consensus size: 93
80334028 TGGATAAGGT
*
80334038 GCCGATGGCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTTCCAG
1 GCCGAT-GCATGTCCCAGACAT-GTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAG
*
80334103 ACATGGTCTTACACTGACT-ACAT-CTCGTA
64 ACATGGTCTTACACTGACTCACATAAT-GTA
*
80334132 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTA-GTCTCAA-TACCGATGCCATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC-ACATCTCAAGT--CGATGCCATGTCCCA
* * *
80334195 GACATGGTCTTACATTGACTCTCATAATGTG
63 GACATGGTCTTACACTGACTCACATAATGTA
*
80334226 GCCGATGCATGTCCCGGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
80334260 CAACAATAAC
Statistics
Matches: 116, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
91 1 0.01
92 21 0.18
93 49 0.42
94 44 0.38
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (93 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACTCACATAATGTA
Found at i:80334237 original size:47 final size:46
Alignment explanation
Indices: 80334038--80334259 Score: 190
Period size: 47 Copynumber: 4.8 Consensus size: 46
80334028 TGGATAAGGT
* **
80334038 GCCGATGGCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
1 GCCGAT-GCATGTCCCAGACATGGTCTTACACTAGCTCACATATGTA
* * *
80334085 GTCGATGCCATGTTCCAGACATGGTCTTACACT-GACT-ACATCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAG-CTCACATAT-GTA
*
80334132 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGCTCTAGTC-TCA-ATA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTC-A--CAT-ATGTA
* * *
80334179 -CCGATGCCATGTCCCAGACATGGTCTTACA-TTGACTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAG-CTCACAT-ATGTA
*
80334226 GCCGATGCATGTCCCGGACAT-GTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGC
80334260 CAACAATAAC
Statistics
Matches: 144, Mismatches: 15, Indels: 33
0.75 0.08 0.17
Matches are distributed among these distances:
45 13 0.09
46 39 0.27
47 73 0.51
48 18 0.12
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCACATATGTA
Found at i:80336547 original size:57 final size:55
Alignment explanation
Indices: 80336478--80336692 Score: 166
Period size: 56 Copynumber: 3.8 Consensus size: 55
80336468 AACACCAGAA
* *
80336478 AAAGGACAGCCTTTGTGGCAAAAATTTGGAAAGGCAAGCATTGTTGGCGAACCTATT
1 AAAGGATAGCCTTTGTGGCAAAAATTT-GAAAGGCAAGCTTTG-TGGCGAACCTATT
* * * *
80336535 AAAGGATAGCCTTTATGG-AAAAACTCTTGAAA-GCAAGCCTTTGTGGTGAACATGTT
1 AAAGGATAGCCTTTGTGGCAAAAA-T-TTGAAAGGCAAG-CTTTGTGGCGAACCTATT
* * * ** * * *
80336591 AAAAGATAGCATTTGTCGCAAATCTTTAGAAGGGTAAGCTTTTGTGGCGAACCTCTT
1 AAAGGATAGCCTTTGTGGCAAAAATTT-GAAAGGCAAGC-TTTGTGGCGAACCTATT
* * ** *
80336648 AAAGGAT-GCCTTTGTGGCGAGACCTTGAAAGGAAAGCCTTTGTGG
1 AAAGGATAGCCTTTGTGGCAAAAATTTGAAAGGCAAG-CTTTGTGG
80336693 TAAGTACTTA
Statistics
Matches: 124, Mismatches: 26, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
55 17 0.14
56 53 0.43
57 52 0.42
58 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.27
Consensus pattern (55 bp):
AAAGGATAGCCTTTGTGGCAAAAATTTGAAAGGCAAGCTTTGTGGCGAACCTATT
Found at i:80336686 original size:28 final size:27
Alignment explanation
Indices: 80336478--80336692 Score: 83
Period size: 28 Copynumber: 7.6 Consensus size: 27
80336468 AACACCAGAA
* ** *
80336478 AAAGGACAGCCTTTGTGGCAAAAATTTGG
1 AAAGGA-AGCCTTTGTGGCGAACCTCT-G
* * *
80336507 AAAGGCAAG-CATTGTTGGCGAACCTATT
1 AAAGG-AAGCCTTTG-TGGCGAACCTCTG
* ** *
80336535 AAAGGATAGCCTTTATGGAAAAACTCTTG
1 AAAGGA-AGCCTTTGTGGCGAACCTC-TG
* * * * *
80336564 AAAGCAAGCCTTTGTGGTGAACATGTT
1 AAAGGAAGCCTTTGTGGCGAACCTCTG
* * * * * *
80336591 AAAAGATAGCATTTGTCGCAAATCTTTAG
1 AAAGGA-AGCCTTTGTGGCGAACCTCT-G
* * *
80336620 AAGGGTAAGCTTTTGTGGCGAACCTCTT
1 AAAGG-AAGCCTTTGTGGCGAACCTCTG
*
80336648 AAAGGATGCCTTTGTGGCGAGACCT-TG
1 AAAGGAAGCCTTTGTGGCGA-ACCTCTG
80336675 AAAGGAAAGCCTTTGTGG
1 AAAGG-AAGCCTTTGTGG
80336693 TAAGTACTTA
Statistics
Matches: 132, Mismatches: 44, Indels: 21
0.67 0.22 0.11
Matches are distributed among these distances:
27 25 0.19
28 63 0.48
29 42 0.32
30 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.27
Consensus pattern (27 bp):
AAAGGAAGCCTTTGTGGCGAACCTCTG
Found at i:80339123 original size:20 final size:19
Alignment explanation
Indices: 80339091--80339133 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
80339081 CCAGTTCGCA
* * *
80339091 TTTTTCACCTTTTTCCACT
1 TTTTTCACATTTTACAACT
80339110 TTTTTACACATTTTACAACT
1 TTTTT-CACATTTTACAACT
80339130 TTTT
1 TTTT
80339134 ACAAATAGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.19, C:0.23, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTTCACATTTTACAACT
Found at i:80348603 original size:31 final size:31
Alignment explanation
Indices: 80348562--80348620 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
80348552 TAGCTTTATC
*
80348562 ATTAAACTATTCGAAAGTTTTCATTTAAATT
1 ATTAAACTATTCAAAAGTTTTCATTTAAATT
* *
80348593 ATTAATCTATTCAAAAGTTTTTATTTAA
1 ATTAAACTATTCAAAAGTTTTCATTTAA
80348621 GTCAATGTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.47
Consensus pattern (31 bp):
ATTAAACTATTCAAAAGTTTTCATTTAAATT
Done.