Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 253 of 325
Found at i:80353609 original size:120 final size:119
Alignment explanation
Indices: 80353397--80353640 Score: 330
Period size: 120 Copynumber: 2.0 Consensus size: 119
80353387 GTTGTCAACA
* * *
80353397 ATGGCCTTTACAAAACTAAATACACTTCGTTTAGCCTAGCATGAGGGTTCCTACGTTTCTATATT
1 ATGGCCTTTACAAAACTAAATACACTTCATTTAACCTAGCATGAGGGTTCCTACGTTTCTACATT
* *
80353462 TTAGCAGATTACTCTCTCACCCCCTCTC-GAAAATTTATCTACATGGTATCTTTG
66 TTAGCAGATTACTCTCTCACCCCCTCTCTG-AAATTTAGCAACATGGTATCTTTG
* * * * *
80353516 ATGGCCTTTTCAAAATTAAGTACACTTTCATTTAACCTAGTATGAGGGTTCCTACGTTTCTGCAT
1 ATGGCCTTTACAAAACTAAATACAC-TTCATTTAACCTAGCATGAGGGTTCCTACGTTTCTACAT
* * *
80353581 TTTAGCTGCTTACTCTAC-CACCCTCTCTCTGAAATTTAGCAACATGGTATCTTTG
65 TTTAGCAGATTACTCT-CTCACCCCCTCTCTGAAATTTAGCAACATGGTATCTTTG
80353636 ATGGC
1 ATGGC
80353641 AGGGTAAATG
Statistics
Matches: 109, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
119 22 0.20
120 85 0.78
121 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (119 bp):
ATGGCCTTTACAAAACTAAATACACTTCATTTAACCTAGCATGAGGGTTCCTACGTTTCTACATT
TTAGCAGATTACTCTCTCACCCCCTCTCTGAAATTTAGCAACATGGTATCTTTG
Found at i:80359091 original size:23 final size:22
Alignment explanation
Indices: 80359059--80359108 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 22
80359049 GCATCATGAC
80359059 GAAAATGAGTAAGACCATAGCT
1 GAAAATGAGTAAGACCATAGCT
*
80359081 GAAAGATGAGTAAGATCATAGCT
1 GAAA-ATGAGTAAGACCATAGCT
80359104 GAAAA
1 GAAAA
80359109 ATGCTATAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 5 0.19
23 21 0.81
ACGTcount: A:0.48, C:0.10, G:0.24, T:0.18
Consensus pattern (22 bp):
GAAAATGAGTAAGACCATAGCT
Found at i:80379018 original size:12 final size:12
Alignment explanation
Indices: 80379001--80379025 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80378991 CAAAAATGTA
80379001 AAAATCATCAAG
1 AAAATCATCAAG
80379013 AAAATCATCAAG
1 AAAATCATCAAG
80379025 A
1 A
80379026 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:80392533 original size:37 final size:37
Alignment explanation
Indices: 80392482--80392579 Score: 178
Period size: 37 Copynumber: 2.6 Consensus size: 37
80392472 AATAGTCCCT
*
80392482 ACACGTAGTTATCGGGTCTTACCCAGACAAAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCC
*
80392519 ACACGTAGTCATCGGGTCTTACCCAGACATAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCC
80392556 ACACGTAGTCATCGGGTCTTACCC
1 ACACGTAGTCATCGGGTCTTACCC
80392580 GGAATATATT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
ACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCC
Found at i:80392781 original size:48 final size:48
Alignment explanation
Indices: 80392723--80393444 Score: 1192
Period size: 48 Copynumber: 15.0 Consensus size: 48
80392713 ATATACACAC
* * *
80392723 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80392771 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80392819 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
80392867 ATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
80392915 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80392963 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
80393011 ATCTCATATATATTTCACACTAGCCATTCGGATTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
80393059 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATAGAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
80393107 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80393155 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
80393203 ATCTCATACATATTTCACACAAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
80393251 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
80393299 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
80393347 ATCTCATACATATTTCGCACTAGCCATTCGACTTAACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
80393395 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80393443 AT
1 AT
80393445 ATTTATCTTG
Statistics
Matches: 632, Mismatches: 42, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 632 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:80400328 original size:45 final size:45
Alignment explanation
Indices: 80400261--80400347 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
80400251 TTATATGCTT
80400261 AAAATGAGTAAGACCATAGCTGAAAGACATTATGGCATCATGACG
1 AAAATGAGTAAGACCATAGCTGAAAGACATTATGGCATCATGACG
* * *
80400306 AAAATGAGTAAGACTATGGCTGAAAGACGTTATGGCATCATG
1 AAAATGAGTAAGACCATAGCTGAAAGACATTATGGCATCATG
80400348 GTAAATAGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (45 bp):
AAAATGAGTAAGACCATAGCTGAAAGACATTATGGCATCATGACG
Found at i:80400375 original size:45 final size:44
Alignment explanation
Indices: 80400261--80400377 Score: 119
Period size: 45 Copynumber: 2.6 Consensus size: 44
80400251 TTATATGCTT
* *
80400261 AAAATGAGTAAGACCATAGCTGAAAGACATTATGGCATCATGACG
1 AAAAGGAGTAAAACCATAGCTGAAAGACATTATGGCATCATGA-G
* * * * *
80400306 AAAATGAGTAAGACTATGGCTGAAAGACGTTATGGCATCATG-G
1 AAAAGGAGTAAAACCATAGCTGAAAGACATTATGGCATCATGAG
* *
80400349 TAAATAGGATTAAAACCATAGATGAAAGA
1 -AAA-AGGAGTAAAACCATAGCTGAAAGA
80400378 TGCTATGACA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
43 1 0.02
44 3 0.05
45 57 0.93
ACGTcount: A:0.44, C:0.12, G:0.23, T:0.21
Consensus pattern (44 bp):
AAAAGGAGTAAAACCATAGCTGAAAGACATTATGGCATCATGAG
Found at i:80401408 original size:25 final size:24
Alignment explanation
Indices: 80401374--80401422 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
80401364 ATGTAAAAGA
*
80401374 AAGGAAAT-AAATAAAAGAAATAAT
1 AAGGAAATAAAAGAAAAG-AATAAT
80401398 AAGGATAATAAAAGAAAAGAATAAT
1 AAGGA-AATAAAAGAAAAGAATAAT
80401423 GAAAGGGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 9 0.41
26 8 0.36
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.16
Consensus pattern (24 bp):
AAGGAAATAAAAGAAAAGAATAAT
Found at i:80402773 original size:40 final size:40
Alignment explanation
Indices: 80402718--80402854 Score: 206
Period size: 40 Copynumber: 3.5 Consensus size: 40
80402708 GGATGGTAAA
*
80402718 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATC
*
80402758 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATC
* *
80402798 CGGGCTAAGTCCTGAAGGCATTTGAGCGAGTTG-CTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATATC
*
80402838 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
80402855 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.16
40 74 0.83
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATC
Found at i:80410741 original size:40 final size:40
Alignment explanation
Indices: 80410686--80410942 Score: 405
Period size: 40 Copynumber: 6.5 Consensus size: 40
80410676 TCGATGGTAA
* *
80410686 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
80410726 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80410766 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
80410806 CCGGACTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
80410846 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80410886 CCGGGCTAAGT-CCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
80410925 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80410943 TACTTGGTTT
Statistics
Matches: 204, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
38 9 0.04
39 33 0.16
40 161 0.79
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80414922 original size:34 final size:34
Alignment explanation
Indices: 80414884--80414955 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
80414874 ATAAACCAAA
80414884 TAAAGTAAGCTTTCAAATAAGCTTAGTAAGCTCG
1 TAAAGTAAGCTTTCAAATAAGCTTAGTAAGCTCG
*
80414918 TAAAGTAAGCTTTCAAATAAGCTTAGTAAGTTCG
1 TAAAGTAAGCTTTCAAATAAGCTTAGTAAGCTCG
80414952 TAAA
1 TAAA
80414956 ATCAAACATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (34 bp):
TAAAGTAAGCTTTCAAATAAGCTTAGTAAGCTCG
Found at i:80417125 original size:39 final size:40
Alignment explanation
Indices: 80417048--80417194 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
80417038 TAGCTCCTCG
* * *
80417048 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
80417088 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
80417127 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
80417167 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
80417195 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:80417205 original size:80 final size:80
Alignment explanation
Indices: 80417094--80417274 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
80417084 CTCATTCAAT
* * *
80417094 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
80417157 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
80417173 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
80417237 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
80417254 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
80417275 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:80417234 original size:40 final size:40
Alignment explanation
Indices: 80417091--80417274 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
80417081 TAACTCATTC
* *
80417091 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
80417131 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
80417171 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
80417211 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
80417252 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
80417275 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:80444950 original size:39 final size:39
Alignment explanation
Indices: 80444899--80445007 Score: 148
Period size: 39 Copynumber: 2.8 Consensus size: 39
80444889 TCGAGAATTA
80444899 AAAGTGAATAGGATTTATTCCTGATTCACTA-AAAGAAAT
1 AAAGTGAATAGGATTTATTCCTGATTCACTAGAAA-AAAT
* * *
80444938 TAAGTGAATAGGAATTATTCCTGATTCACTAGAAAATAT
1 AAAGTGAATAGGATTTATTCCTGATTCACTAGAAAAAAT
* * *
80444977 AAAATGGATAGGATTTGTTCCTGATTCACTA
1 AAAGTGAATAGGATTTATTCCTGATTCACTA
80445008 TGGTAACTCA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
39 58 0.95
40 3 0.05
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (39 bp):
AAAGTGAATAGGATTTATTCCTGATTCACTAGAAAAAAT
Found at i:80446762 original size:47 final size:47
Alignment explanation
Indices: 80446699--80446919 Score: 424
Period size: 47 Copynumber: 4.7 Consensus size: 47
80446689 ATGATAGTAT
80446699 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
80446746 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
80446793 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
80446840 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
80446887 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
80446920 CCCGAAGGGC
Statistics
Matches: 172, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
47 168 0.98
48 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:80447092 original size:36 final size:37
Alignment explanation
Indices: 80447037--80447114 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
80447027 CCGAGCTCTA
* *
80447037 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
80447073 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80447110 AAGAC
1 AAGAC
80447115 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80449026 original size:43 final size:43
Alignment explanation
Indices: 80448978--80449123 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
80448968 TTGGTTTTCA
80448978 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
80449021 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
80449064 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
80449107 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
80449124 TTGAAATGCA
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:80449139 original size:29 final size:29
Alignment explanation
Indices: 80449105--80449178 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
80449095 GTTGTGAGAT
* *
80449105 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
80449134 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
80449163 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
80449179 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:80449667 original size:40 final size:40
Alignment explanation
Indices: 80449491--80449844 Score: 369
Period size: 40 Copynumber: 8.9 Consensus size: 40
80449481 TCGAATGATG
** *
80449491 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
80449531 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
80449571 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
80449611 T-CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
80449650 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
80449690 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
80449730 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
80449770 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
80449810 TCCGGGCTAGGT-CCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
80449845 CGTGTATTCG
Statistics
Matches: 269, Mismatches: 40, Indels: 11
0.84 0.12 0.03
Matches are distributed among these distances:
39 57 0.21
40 194 0.72
41 18 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:80452641 original size:47 final size:47
Alignment explanation
Indices: 80452578--80452892 Score: 580
Period size: 47 Copynumber: 6.7 Consensus size: 47
80452568 ATGATAGTAT
80452578 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
80452625 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
80452672 -GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
80452718 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
80452765 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
80452811 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
80452860 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
80452893 CCCGAAGGGC
Statistics
Matches: 262, Mismatches: 1, Indels: 7
0.97 0.00 0.03
Matches are distributed among these distances:
46 80 0.31
47 138 0.53
48 12 0.05
49 28 0.11
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:80452738 original size:93 final size:93
Alignment explanation
Indices: 80452579--80452892 Score: 567
Period size: 93 Copynumber: 3.3 Consensus size: 93
80452569 TGATAGTATG
80452579 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
80452644 TGAATGTGAAAGTGTATATATGTGATAA
66 TGAATGTGAAAGTGTATATATGTGATAA
80452672 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
80452737 TGAATGTGAAAGTGTATATATGTGATAA
66 TGAATGTGAAAGTGTATATATGTGATAA
80452765 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCCGATGTG
1 -GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
80452829 ATGAATGTGAAAGTGTATATATATGTGATAGG
65 ATGAATGTGAAAGTG--TATATATGTGATA-A
80452861 GCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GCCTAATGGCCGATGTGATGAATGTGA-AAGT
80452893 CCCGAAGGGC
Statistics
Matches: 215, Mismatches: 1, Indels: 7
0.96 0.00 0.03
Matches are distributed among these distances:
93 127 0.59
94 44 0.20
95 40 0.19
96 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (93 bp):
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
TGAATGTGAAAGTGTATATATGTGATAA
Found at i:80452830 original size:140 final size:141
Alignment explanation
Indices: 80452578--80452892 Score: 587
Period size: 140 Copynumber: 2.2 Consensus size: 141
80452568 ATGATAGTAT
80452578 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
80452643 ATGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TAT
66 ATGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGATAT
80452707 ATATGTGATAA
131 ATATGTGATAA
80452718 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
80452783 ATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
66 ATGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATA
*
80452848 TATATGTGATAG
130 TATATGTGATAA
80452860 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
80452893 CCCGAAGGGC
Statistics
Matches: 170, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
140 125 0.74
142 41 0.24
143 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (141 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGATAT
ATATGTGATAA
Found at i:80453066 original size:37 final size:37
Alignment explanation
Indices: 80453010--80453088 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
80453000 CCGAGCTCTA
* * *
80453010 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
80453047 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80453084 AAGAC
1 AAGAC
80453089 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80456159 original size:91 final size:90
Alignment explanation
Indices: 80455967--80456147 Score: 283
Period size: 91 Copynumber: 2.0 Consensus size: 90
80455957 TTAGGGGTGT
* *
80455967 TACACCTCAATTACAATGAAAAAAATCTCAATTTCTAGCAACTAAACACTTCAATTTGCTGCACT
1 TACACCTCAATTACAATGAAAAAAATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACT
*
80456032 TTAACATCTTAATTAACAACATTTA
66 TAAACATCTTAATTAACAACATTTA
* *
80456057 TACACCTCAATTACAGTGAAAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTAC
1 TACACCTCAATTACAATGAAAAAA-ATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCAC
*
80456122 TTAAACA-CTTTAATTTACAACATTTA
65 TTAAACATC-TTAATTAACAACATTTA
80456148 AGCACTTCAA
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
90 24 0.29
91 59 0.71
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (90 bp):
TACACCTCAATTACAATGAAAAAAATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACT
TAAACATCTTAATTAACAACATTTA
Found at i:80456180 original size:69 final size:69
Alignment explanation
Indices: 80456085--80456401 Score: 329
Period size: 69 Copynumber: 4.6 Consensus size: 69
80456075 AAAAAACATC
* ** * * *
80456085 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTTAATTTACAACATTTAAG
1 TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAA
80456150 CACT
66 CACT
* * *
80456154 TCAATTTAAAGCATTTAAACACTTCAATTTGCAGCACTTGAACACTTCAATTTACAACATTTAAG
1 TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAA
80456219 CACT
66 CACT
* ** * * * * * *
80456223 TCAATTTGCAGCACTTT-AACA-TCTCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TA
1 TCAATTTACAGCA-TTTAAACACT-TCAATTTGCAGCACTTAAACACTTCAATTTACAAC-ATTT
80456284 AAACA-T
63 AAACACT
* ** *
80456290 CTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAA
1 -TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAA
80456355 ACACT
65 ACACT
* * * *
80456360 TTAATTTACAGTATTTAAACACTTCAATTTACAGCATTTAAA
1 TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTAAA
80456402 TAGCAACAAC
Statistics
Matches: 200, Mismatches: 39, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
67 2 0.01
68 49 0.25
69 145 0.73
70 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (69 bp):
TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAA
CACT
Found at i:80456348 original size:206 final size:206
Alignment explanation
Indices: 80456013--80456395 Score: 676
Period size: 206 Copynumber: 1.9 Consensus size: 206
80456003 AGCAACTAAA
* * *
80456013 CACTTCAATTTGCTGCACTTTAACATCTTAATTAACAACATTTATACACCTCAATTACAGTGAAA
1 CACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGAAA
*
80456078 AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTTAATTTACAAC
66 AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAAC
* *
80456143 ATTTAAGCACTTCAATTTAAAGCATTTAAACACTTCAATTTGCAGCACTTGAACACTTCAATTTA
131 ATTTAAACACTTCAATTTAAAGCATTTAAACACTTCAATTTACAGCACTTGAACACTTCAATTTA
80456208 CAACATTTAAG
196 CAACATTTAAG
*
80456219 CACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGATA
1 CACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGAAA
80456284 AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAAC
66 AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAAC
* * *
80456349 ATTTAAACACTTTAATTTACAGTATTTAAACACTTCAATTTACAGCA
131 ATTTAAACACTTCAATTTAAAGCATTTAAACACTTCAATTTACAGCA
80456396 TTTAAATAGC
Statistics
Matches: 167, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
206 167 1.00
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.33
Consensus pattern (206 bp):
CACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGAAA
AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAAC
ATTTAAACACTTCAATTTAAAGCATTTAAACACTTCAATTTACAGCACTTGAACACTTCAATTTA
CAACATTTAAG
Found at i:80456398 original size:23 final size:23
Alignment explanation
Indices: 80456009--80456401 Score: 293
Period size: 23 Copynumber: 17.2 Consensus size: 23
80455999 TTCTAGCAAC
* *
80456009 TAAACACTTCAATTTGCTGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
80456033 T-AACATCTT-AATTAACAACATT
1 TAAACA-CTTCAATTTACAGCATT
* * *
80456055 TATACACCTCAA-TTACAG--TG
1 TAAACACTTCAATTTACAGCATT
* * * **
80456075 AAAAAACATCTCAATTTCCAGCAAC
1 TAAACAC-T-TCAATTTACAGCATT
* * *
80456100 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAGCATT
* *
80456123 TAAACACTTTAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* *
80456146 TAAGCACTTCAATTTAAAGCATT
1 TAAACACTTCAATTTACAGCATT
* *
80456169 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAGCATT
* *
80456192 TGAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* *
80456215 TAAGCACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
80456239 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* *
80456261 TATACACCTCAA-TTACAGCGA-T
1 TAAACACTTCAATTTACAGC-ATT
* * **
80456283 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
* * *
80456306 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAGCATT
*
80456329 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* *
80456352 TAAACACTTTAATTTACAGTATT
1 TAAACACTTCAATTTACAGCATT
80456375 TAAACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
80456398 TAAA
1 TAAA
80456402 TAGCAACAAC
Statistics
Matches: 282, Mismatches: 70, Indels: 35
0.73 0.18 0.09
Matches are distributed among these distances:
20 5 0.02
22 32 0.11
23 231 0.82
24 9 0.03
25 5 0.02
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (23 bp):
TAAACACTTCAATTTACAGCATT
Found at i:80460040 original size:40 final size:40
Alignment explanation
Indices: 80459985--80460139 Score: 168
Period size: 40 Copynumber: 3.9 Consensus size: 40
80459975 ATTTTCGGCA
* * * *
80459985 TTTATGAAAAAATGCCGTTATTGCTTTACCTTTTGTGGCG
1 TTTATGCAAAAACGCCGCTAATGCTTTACCTTTTGTGGCG
* * ** *
80460025 TTTATGCAAAAATGCCTCTCTTGCTTTACCTTTT-TCAGCG
1 TTTATGCAAAAACGCCGCTAATGCTTTACCTTTTGT-GGCG
* ** *
80460065 TTTATGCAAAAACGCCACTAATGCTTTACCTTTTACGGCA
1 TTTATGCAAAAACGCCGCTAATGCTTTACCTTTTGTGGCG
*
80460105 TTTATTCAAAAACGCCGCTAATGCTTTACCTTTTG
1 TTTATGCAAAAACGCCGCTAATGCTTTACCTTTTG
80460140 CGGTGTTTTT
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.99
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (40 bp):
TTTATGCAAAAACGCCGCTAATGCTTTACCTTTTGTGGCG
Found at i:80474240 original size:111 final size:110
Alignment explanation
Indices: 80474037--80474254 Score: 231
Period size: 111 Copynumber: 2.0 Consensus size: 110
80474027 ATGCATATTT
** * * * * *
80474037 TGTAACAGCCCATTTTTAGTGAAATTGGAATAGTGGTTTTGGGACCACAAATCCTAGCCGGAAAG
1 TGTAACAGCCCATTTTTAGTGAAATCAGAACAGTGGTTTTGGGACAACAAATCCGAGCCGAAAAA
* * **
80474102 GAAATTTGTTTTAATATTATGGCATGGTTTGCATTATGTTAGGAA
66 GAAATTTATTTTAATATTATGACATGGTCCGCATTATGTTAGGAA
* * *
80474147 TGTAACGGCCCATTTTTCAGTGAAATCAGAACAGTGGTTTTGGGACAACAAATTCGATCC-AAAA
1 TGTAACAGCCCATTTTT-AGTGAAATCAGAACAGTGGTTTTGGGACAACAAATCCGAGCCGAAAA
* * * * * *
80474211 ATAAAGTTTATTTTTATCTTATTATATGGTCCGTATTATGTTAG
65 AGAAA-TTTATTTTAATATTATGACATGGTCCGCATTATGTTAG
80474255 ATATGTCGTG
Statistics
Matches: 86, Mismatches: 20, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
110 22 0.26
111 64 0.74
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.36
Consensus pattern (110 bp):
TGTAACAGCCCATTTTTAGTGAAATCAGAACAGTGGTTTTGGGACAACAAATCCGAGCCGAAAAA
GAAATTTATTTTAATATTATGACATGGTCCGCATTATGTTAGGAA
Found at i:80477630 original size:41 final size:41
Alignment explanation
Indices: 80477586--80477755 Score: 233
Period size: 41 Copynumber: 4.2 Consensus size: 41
80477576 ACCAAAAATG
* * *
80477586 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACG
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACA
80477627 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACA
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACA
*
80477668 CCGCTAAAAACCAGAGCATTA---GCGCTTTC-ATTAATACA
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGA-TAAAACA
*
80477706 CCGCTAAAAACCAAAGCATTAGCGGCGCTTTC-ATTAAAACA
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGA-TAAAACA
*
80477747 CCGTTAAAA
1 CCGCTAAAA
80477756 GTCAGATAAT
Statistics
Matches: 118, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
37 1 0.01
38 34 0.29
41 83 0.70
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (41 bp):
CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACA
Found at i:80477732 original size:79 final size:80
Alignment explanation
Indices: 80477586--80477755 Score: 236
Period size: 79 Copynumber: 2.1 Consensus size: 80
80477576 ACCAAAAATG
** * *
80477586 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCG
1 CCGCTAAAAACCAGAGCATTA--GGCGCTTTCAGTAAAACACCGCTAAAAACCAAAGCATTAGCG
80477651 GCGCTTTCGA-TAAAACA
64 GCGCTTTC-ATTAAAACA
* *
80477668 CCGCTAAAAACCAGAGCATTA-GCGCTTTCATTAATACACCGCTAAAAACCAAAGCATTAGCGGC
1 CCGCTAAAAACCAGAGCATTAGGCGCTTTCAGTAAAACACCGCTAAAAACCAAAGCATTAGCGGC
80477732 GCTTTCATTAAAACA
66 GCTTTCATTAAAACA
*
80477747 CCGTTAAAA
1 CCGCTAAAA
80477756 GTCAGATAAT
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 58 0.73
82 21 0.26
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (80 bp):
CCGCTAAAAACCAGAGCATTAGGCGCTTTCAGTAAAACACCGCTAAAAACCAAAGCATTAGCGGC
GCTTTCATTAAAACA
Found at i:80477834 original size:54 final size:54
Alignment explanation
Indices: 80477776--80477882 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
80477766 CCCTAAAATC
* *
80477776 CTAAA-CCCTAAAAAATAATAAACACTAATCTATAACCCCTAAAACACTAAACCT
1 CTAAATCCC-AAAAAACAATAAACACTAAACTATAACCCCTAAAACACTAAACCT
* ** * *
80477830 CTAAATCCCAAAAACCCCTAAACACTAAACTATAACCTCTAAAACCCTAAACC
1 CTAAATCCCAAAAAACAATAAACACTAAACTATAACCCCTAAAACACTAAACC
80477883 CCAAAAAAAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 42 0.93
55 3 0.07
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.19
Consensus pattern (54 bp):
CTAAATCCCAAAAAACAATAAACACTAAACTATAACCCCTAAAACACTAAACCT
Found at i:80485119 original size:49 final size:49
Alignment explanation
Indices: 80485047--80485178 Score: 151
Period size: 49 Copynumber: 2.7 Consensus size: 49
80485037 GCACATCATA
* * * *
80485047 GTCGATGTCATGTTCCAGGCAGGTCTTACACTGAATTTCATATATTGAG-
1 GTCGATGTCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCG-GT
* * * *
80485096 G-CTGATGTCGTGTCCCAGACAGGTCTTGCACTGACTCTCATCTATCGGT
1 GTC-GATGTCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCGGT
*
80485145 GTCGATGCCATGTCCCAGACAGGTCTTACACTGA
1 GTCGATGTCATGTCCCAGACAGGTCTTACACTGA
80485179 CACACAACAA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
48 2 0.03
49 66 0.96
50 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.30
Consensus pattern (49 bp):
GTCGATGTCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCGGT
Found at i:80485179 original size:49 final size:49
Alignment explanation
Indices: 80485005--80485179 Score: 146
Period size: 49 Copynumber: 3.6 Consensus size: 49
80484995 AGATGCCGAC
* *
80485005 GCCATGTCCCAGACATGGTCTTACACT-AGCTAGCA-C-ATC-ATAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGA-CTATCATCTATCGGT-GTCGAT
* * * * * * *
80485053 GTCATGTTCCAGGCAGGTCTTACACTGAATTTCATATATTGAG-G-CTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTATCATCTATCG-GTGTC-GAT
* * * *
80485102 GTCGTGTCCCAGACAGGTCTTGCACTGACTCTCATCTATCGGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTATCATCTATCGGTGTCGAT
80485151 GCCATGTCCCAGACAGGTCTTACACTGAC
1 GCCATGTCCCAGACAGGTCTTACACTGAC
80485180 ACACAACAAG
Statistics
Matches: 99, Mismatches: 20, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
47 14 0.14
48 15 0.15
49 69 0.70
50 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.29
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTATCATCTATCGGTGTCGAT
Found at i:80485305 original size:46 final size:45
Alignment explanation
Indices: 80485237--80485362 Score: 166
Period size: 46 Copynumber: 2.8 Consensus size: 45
80485227 TATATCTCGA
* *
80485237 GGCCGATGCATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAA-T
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAGT
* *
80485284 -GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATGT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAA-GT
80485329 GGCCGATGCATGTCCCAGACATGTCTTACACTAG
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAG
80485363 TACACATATC
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 66 0.94
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGT
Found at i:80490445 original size:48 final size:48
Alignment explanation
Indices: 80490353--80490626 Score: 206
Period size: 48 Copynumber: 5.8 Consensus size: 48
80490343 GTCCGCGTAT
* * * * *
80490353 CGATGTCATATCCTAGATATGGTCTTA-ACGA-AGTCTCATATCGGTGT
1 CGATGCCATGTCCCAGACATGGTCTTATACGAGA-TCTCATATCGGTGC
* *
80490400 CGATGCCATGTCCCAGACATGATCTTATACGAGACCTCATATCGGTG-
1 CGATGCCATGTCCCAGACATGGTCTTATACGAGATCTCATATCGGTGC
* * * * * *
80490447 C---G--ATGTCCCAGACATGGTATTATACGAAATCACTTAACGATGC
1 CGATGCCATGTCCCAGACATGGTCTTATACGAGATCTCATATCGGTGC
* * * * * * * *
80490490 CGAAGCCATATCCCTGATATGGTTTTATACGGGATCACATATTGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTATACGAGATCTCATATCGGTGC
* * * *
80490538 CGATGTCATGTCCCAGACATGGTCTTACACGGGATCTCATCTCGGATGC
1 CGATGCCATGTCCCAGACATGGTCTTATACGAGATCTCATATCGG-TGC
* * *
80490587 CGATGCCATGTCCTAGATATGGTCTTACAC-AGGATCTCAT
1 CGATGCCATGTCCCAGACATGGTCTTATACGA-GATCTCAT
80490627 TAACCATGGT
Statistics
Matches: 179, Mismatches: 38, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
42 32 0.18
43 1 0.01
44 1 0.01
46 1 0.01
47 23 0.13
48 82 0.46
49 39 0.22
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTATACGAGATCTCATATCGGTGC
Found at i:80490597 original size:49 final size:49
Alignment explanation
Indices: 80490485--80490626 Score: 169
Period size: 49 Copynumber: 2.9 Consensus size: 49
80490475 ATCACTTAAC
* * * * * * *
80490485 GATGCCGAAGCCATATCCCTGATATGGTTTTATACGGGATCACATATTG
1 GATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGATCTCATATCG
* * *
80490534 G-TGCCGATGTCATGTCCCAGACATGGTCTTACACGGGATCTCATCTCG
1 GATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGATCTCATATCG
* *
80490582 GATGCCGATGCCATGTCCTAGATATGGTCTTACACAGGATCTCAT
1 GATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGATCTCAT
80490627 TAACCATGGT
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 38 0.49
49 40 0.51
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (49 bp):
GATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGATCTCATATCG
Found at i:80499959 original size:46 final size:46
Alignment explanation
Indices: 80499909--80500084 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80499899 TGGTTGAGCA
80499909 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80499955 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80500000 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80500048 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80500085 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80500065 original size:93 final size:93
Alignment explanation
Indices: 80499906--80500077 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80499896 GGATGGTTGA
* *
80499906 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80499971 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80499999 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80500064 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80500078 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80503722 original size:91 final size:92
Alignment explanation
Indices: 80503553--80503750 Score: 254
Period size: 91 Copynumber: 2.2 Consensus size: 92
80503543 TTGGATGCAA
* *
80503553 CCAACAATTGAATAGAACCAATTGCAACAGCCACCAATTGCCGAAAAATAAAAAATAATAGCAGC
1 CCAACAATTGAATAGAACCAATTGCAACAGCCACCAAATGCCGAAAAACAAAAAATAATAGCAGC
80503618 AAGGAACAATTGCAAAGACCTGAAGAG
66 AAGGAACAATTGCAAAGACCTGAAGAG
* * * ** * *
80503645 CCAGCGATTGAATAGAACCAATT-TAGTAGCCACCAAATGCCGAAAAACAAAAAATAATAGTAGT
1 CCAACAATTGAATAGAACCAATTGCAACAGCCACCAAATGCCGAAAAACAAAAAATAATAGCAGC
* * * * **
80503709 AGGGAGCAGTTGCAGAGATGTGAAGAG
66 AAGGAACAATTGCAAAGACCTGAAGAG
80503736 CCAACAATTGAATAG
1 CCAACAATTGAATAG
80503751 CAAAACAGTT
Statistics
Matches: 89, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
91 68 0.76
92 21 0.24
ACGTcount: A:0.46, C:0.18, G:0.20, T:0.16
Consensus pattern (92 bp):
CCAACAATTGAATAGAACCAATTGCAACAGCCACCAAATGCCGAAAAACAAAAAATAATAGCAGC
AAGGAACAATTGCAAAGACCTGAAGAG
Found at i:80504242 original size:10 final size:10
Alignment explanation
Indices: 80504227--80504266 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
80504217 CAAAAATCAC
80504227 AAAATAATTT
1 AAAATAATTT
80504237 AAAATAATTTT
1 AAAATAA-TTT
*
80504248 CAAA-AATTT
1 AAAATAATTT
80504257 AAAATAATTT
1 AAAATAATTT
80504267 TTAAAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 6 0.23
10 14 0.54
11 6 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (10 bp):
AAAATAATTT
Found at i:80504257 original size:20 final size:20
Alignment explanation
Indices: 80504232--80504272 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
80504222 ATCACAAAAT
80504232 AATTTAAAATAATTTTCAAA
1 AATTTAAAATAATTTTCAAA
*
80504252 AATTTAAAATAATTTTTAAA
1 AATTTAAAATAATTTTCAAA
80504272 A
1 A
80504273 TTTTGAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
AATTTAAAATAATTTTCAAA
Found at i:80504322 original size:11 final size:10
Alignment explanation
Indices: 80504302--80504342 Score: 55
Period size: 11 Copynumber: 3.9 Consensus size: 10
80504292 TTCCAATTTT
80504302 TTTAAAAAAA
1 TTTAAAAAAA
80504312 TTTATAAAAAA
1 TTTA-AAAAAA
80504323 TTTAAATAAAA
1 TTTAAA-AAAA
*
80504334 TATAAAAAA
1 TTTAAAAAA
80504343 GTTCAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
TTTAAAAAAA
Found at i:80511099 original size:14 final size:14
Alignment explanation
Indices: 80511080--80511107 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80511070 ATGTCACTAT
80511080 AACAAATTTAACAA
1 AACAAATTTAACAA
80511094 AACAAATTTAACAA
1 AACAAATTTAACAA
80511108 TATTAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.21
Consensus pattern (14 bp):
AACAAATTTAACAA
Found at i:80511440 original size:15 final size:14
Alignment explanation
Indices: 80511405--80511443 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
80511395 TGGGGAATAT
80511405 AAAATTTCAAATTAA
1 AAAATTT-AAATTAA
*
80511420 ATAATTTAAATTAA
1 AAAATTTAAATTAA
*
80511434 AAAAATTAAA
1 AAAATTTAAA
80511444 ATGAATGAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAATTTAAATTAA
Found at i:80517164 original size:21 final size:21
Alignment explanation
Indices: 80517140--80517179 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80517130 CCATATTTTC
*
80517140 TTTTATTTCACATTTTTACTA
1 TTTTATTTCACACTTTTACTA
* *
80517161 TTTTGTTTTACACTTTTAC
1 TTTTATTTCACACTTTTAC
80517180 AAACAAGTCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.15, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTATTTCACACTTTTACTA
Found at i:80517659 original size:33 final size:33
Alignment explanation
Indices: 80517617--80517680 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
80517607 GGTCAAATTG
*
80517617 TTAATTAGGACCCTTTAATTCAATATCTAATGC
1 TTAATTAGGACCCTCTAATTCAATATCTAATGC
80517650 TTAATTAGGACCCTCTAATTCAATATCTAAT
1 TTAATTAGGACCCTCTAATTCAATATCTAAT
80517681 ACAATTTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (33 bp):
TTAATTAGGACCCTCTAATTCAATATCTAATGC
Found at i:80528452 original size:48 final size:50
Alignment explanation
Indices: 80528272--80528515 Score: 277
Period size: 50 Copynumber: 5.0 Consensus size: 50
80528262 AAAAGGGTAA
80528272 AATGCTGATGCAATGTCCCAGACATGGTCTTACACTGGCTCTCATATATC
1 AATGCTGATGCAATGTCCCAGACATGGTCTTACACTGGCTCTCATATATC
** * *
80528322 GGTACTGATGCAATGTCCTAGACATGGTCTTACACTGGCTCTCATATATC
1 AATGCTGATGCAATGTCCCAGACATGGTCTTACACTGGCTCTCATATATC
**
80528372 GGTGCTGATGCAATGTCCCAGACATGGTCTTACACTGGCT-TACATA-A-C
1 AATGCTGATGCAATGTCCCAGACATGGTCTTACACTGGCTCT-CATATATC
** * *
80528420 AATGCCAATGCCATGTCCCAGACATGGTCTTACACTAAGC-CTCATA-A-C
1 AATGCTGATGCAATGTCCCAGACATGGTCTTACACT-GGCTCTCATATATC
* * * * *
80528468 AATGCTGATGCCATGGT-CCAAACATAGTCTTACACTAGCTCGCATATA
1 AATGCTGATGCAAT-GTCCCAGACATGGTCTTACACTGGCTCTCATATA
80528516 GCCCTAGTAT
Statistics
Matches: 171, Mismatches: 17, Indels: 13
0.85 0.08 0.06
Matches are distributed among these distances:
47 3 0.02
48 72 0.42
49 8 0.05
50 88 0.51
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (50 bp):
AATGCTGATGCAATGTCCCAGACATGGTCTTACACTGGCTCTCATATATC
Found at i:80539115 original size:14 final size:14
Alignment explanation
Indices: 80539096--80539123 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80539086 ATTCGGTAAA
80539096 TTCCTTAAATTACT
1 TTCCTTAAATTACT
80539110 TTCCTTAAATTACT
1 TTCCTTAAATTACT
80539124 AAAAAAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (14 bp):
TTCCTTAAATTACT
Found at i:80548157 original size:22 final size:22
Alignment explanation
Indices: 80548123--80548164 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
80548113 TATATTCCTA
*
80548123 AATATATGCCTAAAATATATAC
1 AATATATGCCTAAAAGATATAC
**
80548145 AATATATTTCTAAAAGATAT
1 AATATATGCCTAAAAGATAT
80548165 CCCATTATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.36
Consensus pattern (22 bp):
AATATATGCCTAAAAGATATAC
Found at i:80553935 original size:22 final size:22
Alignment explanation
Indices: 80553907--80553948 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
80553897 TATATTCCTA
*
80553907 AATATATGCCTAAAATATATAC
1 AATATATGCCTAAAAGATATAC
*
80553929 AATATATTCCTAAAAGATAT
1 AATATATGCCTAAAAGATAT
80553949 CCCATTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.33
Consensus pattern (22 bp):
AATATATGCCTAAAAGATATAC
Found at i:80555881 original size:49 final size:50
Alignment explanation
Indices: 80555801--80556033 Score: 254
Period size: 49 Copynumber: 4.7 Consensus size: 50
80555791 TGTTATTGTA
* *
80555801 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGGTAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * **
80555851 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * * **
80555901 CGATCACATGTGTAGTGCTAAGTGCAGGCAACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
80555951 AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
80556001 -GGTCGCATGTGTAGTACTATGTGCGGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
80556034 TGCATACCAG
Statistics
Matches: 147, Mismatches: 34, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
49 68 0.46
50 43 0.29
51 36 0.24
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:80556077 original size:150 final size:150
Alignment explanation
Indices: 80555801--80556083 Score: 399
Period size: 150 Copynumber: 1.9 Consensus size: 150
80555791 TGTTATTGTA
* * *
80555801 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGGTAATTGGTCGCATGTGTAGT
1 AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGT
* * ***
80555866 ACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGATCACATGTGTAGTGCTAAGTGCAGGCA
66 ACTAAGTGCAGGCTACTATGCATACCCAATAACTTCGATCACAAGTGTAGAAATAAGTGCAGGCA
80555931 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
80555951 AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGT
* * * * * * *
80556016 ACTATGTGCGGGCTACTATGCATA-CCAGATAGCTTTGGTTACAAGTGT-GAAAATATGTGCAGG
66 ACTAAGTGCAGGCTACTATGCATACCCA-ATAACTTCGATCACAAGTGTAG-AAATAAGTGCAGG
80556079 CAACT
129 CAACT
80556084 GAGTATCATA
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
149 4 0.03
150 112 0.97
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (150 bp):
AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCATACCCAATAACTTCGATCACAAGTGTAGAAATAAGTGCAGGCA
ACTACGTGTATCAGATGGTT
Found at i:80560006 original size:17 final size:19
Alignment explanation
Indices: 80559974--80560008 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
80559964 ACGTTTGGAT
80559974 ACTAAATTTAGTAAAAAGG
1 ACTAAATTTAGTAAAAAGG
80559993 ACTAAA-TT-GTAAAAAG
1 ACTAAATTTAGTAAAAAG
80560009 TGCAAAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.54, C:0.06, G:0.14, T:0.26
Consensus pattern (19 bp):
ACTAAATTTAGTAAAAAGG
Found at i:80561129 original size:49 final size:49
Alignment explanation
Indices: 80561053--80561226 Score: 215
Period size: 49 Copynumber: 3.5 Consensus size: 49
80561043 TGAGGTCACG
*
80561053 TGTGTAGTACTAAGTGCAGGCTGCTACGTGTACCGGATAATTGGTAGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCA
* * * ** *
80561102 TGTGTAGTACTAAGTGCAGGCTACTACGTGCATCAGATGGTTAGGTCA-CG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGT-AGCA
* * *
80561152 TATGTAGTACTAAGTGCGGGCTACTACGTGTACCGGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCA
* *
80561201 TGTGTAGTACTATGTGCAAGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
80561227 TGCATACCAG
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
49 62 0.61
50 39 0.38
51 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCA
Found at i:80561218 original size:99 final size:99
Alignment explanation
Indices: 80561045--80561226 Score: 310
Period size: 99 Copynumber: 1.8 Consensus size: 99
80561035 ATCTATTGTG
* *
80561045 AGGTCACGTGTGTAGTACTAAGTGCAGGCTGCTACGTGTACCGGATAATTGGTAGCATGTGTAGT
1 AGGTCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCATGTGTAGT
*
80561110 ACTAAGTGCAGGCTACTACGTGCATCAGATGGTT
66 ACTAAGTGCAAGCTACTACGTGCATCAGATGGTT
* *
80561144 AGGTCACGTATGTAGTACTAAGTGCGGGCTACTACGTGTACCGGATAATTGGTTGCATGTGTAGT
1 AGGTCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCATGTGTAGT
*
80561209 ACTATGTGCAAGCTACTA
66 ACTAAGTGCAAGCTACTA
80561227 TGCATACCAG
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 77 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (99 bp):
AGGTCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCATGTGTAGT
ACTAAGTGCAAGCTACTACGTGCATCAGATGGTT
Found at i:80565659 original size:274 final size:274
Alignment explanation
Indices: 80565170--80565722 Score: 1097
Period size: 274 Copynumber: 2.0 Consensus size: 274
80565160 TAATACCATA
80565170 TAGAACTCGGATAAGGTGGATTGTGGTTAAAAATGTGTAATTTACCATTTTATGTATAAAGAACT
1 TAGAACTCGGATAAGGTGGATTGTGGTTAAAAATGTGTAATTTACCATTTTATGTATAAAGAACT
*
80565235 AAATTGCAAAATAGTTAAATTTATAGGGCAAATATGTAAATTTCCATATATGTAAATTAGGGACT
66 AAATTGCAAAATAGTTAAATTTATAGGGAAAATATGTAAATTTCCATATATGTAAATTAGGGACT
80565300 AAATTGAAATGAATAGTTACTGAAAATATTGAATTTGATAAATATAGATCAAGGAAAACAAATAT
131 AAATTGAAATGAATAGTTACTGAAAATATTGAATTTGATAAATATAGATCAAGGAAAACAAATAT
80565365 CGGAACTTGATCGGGGGAAACAAAAAGTTGACGGGTAGACAAAAGTTAACTGAGCAAATATGAGG
196 CGGAACTTGATCGGGGGAAACAAAAAGTTGACGGGTAGACAAAAGTTAACTGAGCAAATATGAGG
80565430 TAAGTTCGTATAAT
261 TAAGTTCGTATAAT
80565444 TAGAACTCGGATAAGGTGGATTGTGGTTAAAAATGTGTAATTTACCATTTTATGTATAAAGAACT
1 TAGAACTCGGATAAGGTGGATTGTGGTTAAAAATGTGTAATTTACCATTTTATGTATAAAGAACT
80565509 AAATTGCAAAATAGTTAAATTTATAGGGAAAATATGTAAATTTCCATATATGTAAATTAGGGACT
66 AAATTGCAAAATAGTTAAATTTATAGGGAAAATATGTAAATTTCCATATATGTAAATTAGGGACT
80565574 AAATTGAAATGAATAGTTACTGAAAATATTGAATTTGATAAATATAGATCAAGGAAAACAAATAT
131 AAATTGAAATGAATAGTTACTGAAAATATTGAATTTGATAAATATAGATCAAGGAAAACAAATAT
80565639 CGGAACTTGATCGGGGGAAACAAAAAGTTGACGGGTAGACAAAAGTTAACTGAGCAAATATGAGG
196 CGGAACTTGATCGGGGGAAACAAAAAGTTGACGGGTAGACAAAAGTTAACTGAGCAAATATGAGG
80565704 TAAGTTCGTATAAT
261 TAAGTTCGTATAAT
80565718 TAGAA
1 TAGAA
80565723 TCGAACTTTT
Statistics
Matches: 278, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
274 278 1.00
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (274 bp):
TAGAACTCGGATAAGGTGGATTGTGGTTAAAAATGTGTAATTTACCATTTTATGTATAAAGAACT
AAATTGCAAAATAGTTAAATTTATAGGGAAAATATGTAAATTTCCATATATGTAAATTAGGGACT
AAATTGAAATGAATAGTTACTGAAAATATTGAATTTGATAAATATAGATCAAGGAAAACAAATAT
CGGAACTTGATCGGGGGAAACAAAAAGTTGACGGGTAGACAAAAGTTAACTGAGCAAATATGAGG
TAAGTTCGTATAAT
Found at i:80565963 original size:22 final size:22
Alignment explanation
Indices: 80565922--80565996 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
80565912 TACCTAGTAA
* * *
80565922 GAGCTTATTGTTTCAACTCATTG
1 GAGCTTACTG-TTCAGCTCAATG
*
80565945 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATG
* *
80565967 GAGCTTACTATTCAGCTCAAAG
1 GAGCTTACTGTTCAGCTCAATG
80565989 GAGCTTAC
1 GAGCTTAC
80565997 CAACCATCAC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
22 36 0.80
23 9 0.20
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATG
Found at i:80568571 original size:27 final size:27
Alignment explanation
Indices: 80568247--80568574 Score: 351
Period size: 27 Copynumber: 12.0 Consensus size: 27
80568237 TATCCCCTTT
*
80568247 ATAGATCACCACAAAGGCTTCCTTTTT
1 ATAGATCACCACAAAGGCTTCCTTTTC
* *
80568274 ATAGATCACCACAAAGACTTCCTTTTT
1 ATAGATCACCACAAAGGCTTCCTTTTC
* * *
80568301 AGAGATCGCCACAAAGGCTTCCTATTC
1 ATAGATCACCACAAAGGCTTCCTTTTC
*
80568328 ATAGATTC-CCACAAAGGCTTCATTTTC
1 ATAGA-TCACCACAAAGGCTTCCTTTTC
* *
80568355 ATAGATAGCCACACCACAAAGGCTTTCTTTTT
1 ATAGAT-----CACCACAAAGGCTTCCTTTTC
** *
80568387 ATAGATTTCTACAAAGGCTTCCTTTTC
1 ATAGATCACCACAAAGGCTTCCTTTTC
*
80568414 A-ATGAT-AGCTACAAAGGCTTCCTTTTC
1 ATA-GATCA-CCACAAAGGCTTCCTTTTC
* *
80568441 ATAGATCACTACAAGGGCTTCCTTTTC
1 ATAGATCACCACAAAGGCTTCCTTTTC
*
80568468 ATTGAT-AGCCACAAAGGCTTCCTTTTC
1 ATAGATCA-CCACAAAGGCTTCCTTTTC
* *
80568495 ATAGATCACTACAAAGGCTTCATTTTC
1 ATAGATCACCACAAAGGCTTCCTTTTC
*
80568522 ATTGAT-AGCCACAAAGGCTTCCTTTTC
1 ATAGATCA-CCACAAAGGCTTCCTTTTC
*
80568549 ATAGATCACCATAAAGGCTTCCTTTT
1 ATAGATCACCACAAAGGCTTCCTTTT
80568575 TTGGCCTATT
Statistics
Matches: 256, Mismatches: 30, Indels: 30
0.81 0.09 0.09
Matches are distributed among these distances:
26 4 0.02
27 223 0.87
28 6 0.02
31 1 0.00
32 22 0.09
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (27 bp):
ATAGATCACCACAAAGGCTTCCTTTTC
Found at i:80581552 original size:46 final size:46
Alignment explanation
Indices: 80581499--80581671 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
80581489 TGGTTGAGCA
80581499 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
80581545 TCGGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
80581590 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80581638 CCCGAGCTCGTTGAGTTGAGTCCGATTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80581672 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.57
47 27 0.27
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80588348 original size:27 final size:27
Alignment explanation
Indices: 80588307--80588497 Score: 176
Period size: 27 Copynumber: 7.1 Consensus size: 27
80588297 GGTCGTTAAG
*
80588307 ACCCC-AGTTTGTAAAATTACCAAAAT
1 ACCCCTAGTTTGTAAAATTACCGAAAT
*
80588333 ACCCCTAGTTTATAAAATTACCGAAAT
1 ACCCCTAGTTTGTAAAATTACCGAAAT
* *
80588360 ACCCCAAATTTGTAAAATTACCGAAAT
1 ACCCCTAGTTTGTAAAATTACCGAAAT
* * *
80588387 A-CCCTCGATTTATAAAATTATCGAAAT
1 ACCCCTAG-TTTGTAAAATTACCGAAAT
* *
80588414 ACCGCC-AGTTTTTAAAATTATCGAAAT
1 ACC-CCTAGTTTGTAAAATTACCGAAAT
* **
80588441 A-CCCTCGATTTGTAAAATTACTAAAAT
1 ACCCCTAG-TTTGTAAAATTACCGAAAT
* * *
80588468 A-ACCTTGTAGTGTAAAATTACCGAAAT
1 ACCCCTAGT-TTGTAAAATTACCGAAAT
80588495 ACC
1 ACC
80588498 TTGTAGTGTA
Statistics
Matches: 134, Mismatches: 23, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
25 2 0.01
26 11 0.08
27 117 0.87
28 2 0.01
29 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
ACCCCTAGTTTGTAAAATTACCGAAAT
Found at i:80588468 original size:54 final size:53
Alignment explanation
Indices: 80588307--80588497 Score: 215
Period size: 54 Copynumber: 3.5 Consensus size: 53
80588297 GGTCGTTAAG
* * *
80588307 ACCCCAGTTTGTAAAATTACCAAAATACCC-CTAGTTTATAAAATTACCGAAAT
1 ACCCCAGTTTGTAAAATTACCGAAATACCCTCGA-TTTATAAAATTACTGAAAT
*
80588360 ACCCCAAATTTGTAAAATTACCGAAATACCCTCGATTTATAAAATTA-TCGAAAT
1 ACCCC-AGTTTGTAAAATTACCGAAATACCCTCGATTTATAAAATTACT-GAAAT
* * * *
80588414 ACCGCCAGTTTTTAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAAAT
1 ACC-CCAGTTTGTAAAATTACCGAAATACCCTCGATTTATAAAATTACTGAAAT
* ** *
80588468 AACCTTGTAGTGTAAAATTACCGAAATACC
1 ACCCCAGT-TTGTAAAATTACCGAAATACC
80588498 TTGTAGTGTA
Statistics
Matches: 117, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
53 8 0.07
54 104 0.89
55 5 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (53 bp):
ACCCCAGTTTGTAAAATTACCGAAATACCCTCGATTTATAAAATTACTGAAAT
Found at i:80588484 original size:81 final size:81
Alignment explanation
Indices: 80588316--80588497 Score: 217
Period size: 81 Copynumber: 2.2 Consensus size: 81
80588306 GACCCCAGTT
*
80588316 TGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCGAAATACCCCAAATTTGTAAAATTAC
1 TGTAAAATTACCGAAATACCCCTAGTTTATAAAATTACCGAAATACCCCAAATTTGTAAAATTAC
* * *
80588381 CGAAATACCCTCGATT
66 CAAAATAACCTCGATG
* * * * *
80588397 TATAAAATTATCGAAATACCGCC-AGTTTTTAAAATTATCGAAATACCCTC-GATTTGTAAAATT
1 TGTAAAATTACCGAAATACC-CCTAGTTTATAAAATTACCGAAATACCC-CAAATTTGTAAAATT
* *
80588460 ACTAAAATAACCTTG-TAG
64 ACCAAAATAACCTCGAT-G
80588478 TGTAAAATTACCGAAATACC
1 TGTAAAATTACCGAAATACC
80588498 TTGTAGTGTA
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 1 0.01
81 81 0.95
82 3 0.04
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (81 bp):
TGTAAAATTACCGAAATACCCCTAGTTTATAAAATTACCGAAATACCCCAAATTTGTAAAATTAC
CAAAATAACCTCGATG
Found at i:80588505 original size:26 final size:26
Alignment explanation
Indices: 80588451--80588530 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
80588441 ACCCTCGATT
**
80588451 TGTAAAATTACTAAAATAACCTTGTAG
1 TGTAAAATTACCGAAAT-ACCTTGTAG
80588478 TGTAAAATTACCGAAATACCTTGTAG
1 TGTAAAATTACCGAAATACCTTGTAG
* *
80588504 TGTAAAATTATCGAAATATCCCTGTAG
1 TGTAAAATTACCGAAATA-CCTTGTAG
80588531 GGTAGAATGA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 26 0.54
27 22 0.46
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (26 bp):
TGTAAAATTACCGAAATACCTTGTAG
Found at i:80588951 original size:27 final size:27
Alignment explanation
Indices: 80588902--80588953 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
80588892 CTATCTGGTT
* *
80588902 TATGGCTTTGTGCTAATCGTATTTAGC
1 TATGGCTATGTGCTAATCATATTTAGC
80588929 TATGGCTATGTGCCT-ATCATATTTA
1 TATGGCTATGTG-CTAATCATATTTA
80588954 TTGATGACTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.44
Consensus pattern (27 bp):
TATGGCTATGTGCTAATCATATTTAGC
Found at i:80592913 original size:43 final size:42
Alignment explanation
Indices: 80592819--80592927 Score: 112
Period size: 43 Copynumber: 2.6 Consensus size: 42
80592809 ACTTATGATT
*
80592819 TACATGTAAGACCAAGTCTGGGACATCGGCATCATATTTGAT
1 TACATGTAAGACCAAGTCTGGGACATCGGCATCATATTTGAG
*** ** *
80592861 TTTGTGTAAGACCCTGTCTGGGACAGT-GTCATCGATATTTGAG
1 TACATGTAAGACCAAGTCTGGGACA-TCGGCATC-ATATTTGAG
* *
80592904 TACATGTAAGACCACGCCTGGGAC
1 TACATGTAAGACCAAGTCTGGGAC
80592928 GTTGGCATTT
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
42 25 0.48
43 27 0.52
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (42 bp):
TACATGTAAGACCAAGTCTGGGACATCGGCATCATATTTGAG
Found at i:80597906 original size:14 final size:13
Alignment explanation
Indices: 80597886--80597922 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
80597876 AATATTTGAC
80597886 TTGTTCTTAATTA
1 TTGTTCTTAATTA
80597899 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
80597913 TTGTT-TTAAT
1 TTGTTCTTAAT
80597923 ATTCCAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:80598954 original size:37 final size:37
Alignment explanation
Indices: 80598854--80598956 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
80598844 CGAATAGTCC
* *
80598854 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
80598891 CCACACGTAGTCATCGGGTTTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
80598928 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
80598957 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:80599154 original size:48 final size:48
Alignment explanation
Indices: 80599096--80599385 Score: 463
Period size: 48 Copynumber: 6.0 Consensus size: 48
80599086 ATATACACAC
* * * * *
80599096 ATCTCCTACATATTTCACATTAGCCATTCAGCTTTTCCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80599144 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80599192 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
80599240 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
80599288 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
80599336 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80599384 AT
1 AT
80599386 ATTTATCTTG
Statistics
Matches: 226, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 226 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:80609765 original size:34 final size:35
Alignment explanation
Indices: 80609700--80609770 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 35
80609690 GTAACTATAA
* * *
80609700 TGGGCTATAGCCCACACTGATACTGTTATTGT-AT
1 TGGGCTAAAGCCCACACTGAAACTGTGATTGTCAT
80609734 TGGGCTAAAGCCCACACTGAAAGCTG-GATTGTCAT
1 TGGGCTAAAGCCCACACTGAAA-CTGTGATTGTCAT
80609769 TG
1 TG
80609771 ATATGGGCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
34 25 0.78
35 7 0.22
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (35 bp):
TGGGCTAAAGCCCACACTGAAACTGTGATTGTCAT
Found at i:80621310 original size:30 final size:30
Alignment explanation
Indices: 80621276--80621336 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
80621266 TCCTTAACTC
80621276 AAACTTTGGACA-AATTACAATTTTGCCCCT
1 AAACTTTGG-CATAATTACAATTTTGCCCCT
* * *
80621306 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCATAATTACAATTTTGCCCCT
80621336 A
1 A
80621337 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCATAATTACAATTTTGCCCCT
Found at i:80623933 original size:3 final size:3
Alignment explanation
Indices: 80623925--80623950 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
80623915 TCCAAGTAAG
80623925 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
80623951 CATTCTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:80624850 original size:14 final size:14
Alignment explanation
Indices: 80624831--80624897 Score: 98
Period size: 14 Copynumber: 4.7 Consensus size: 14
80624821 CCAGAAAAGT
80624831 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
80624845 AAATCATTTTTCAAG
1 AAATCA-TTTTCCAG
*
80624860 AAATTATTTTCCAG
1 AAATCATTTTCCAG
80624874 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
80624888 AAAACATTTT
1 AAATCATTTT
80624898 ACCTGCAAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
14 35 0.74
15 12 0.26
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:80629253 original size:30 final size:30
Alignment explanation
Indices: 80629217--80629276 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80629207 TTCCCGAGCC
*
80629217 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
80629247 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
80629277 CGCATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:80632043 original size:16 final size:16
Alignment explanation
Indices: 80632022--80632054 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80632012 TAGAGGTGGA
80632022 AGAAAATGG-GACAGGG
1 AGAAAA-GGAGACAGGG
80632038 AGAAAAGGAGACAGGG
1 AGAAAAGGAGACAGGG
80632054 A
1 A
80632055 ACTGCTCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.48, C:0.06, G:0.42, T:0.03
Consensus pattern (16 bp):
AGAAAAGGAGACAGGG
Found at i:80650132 original size:29 final size:28
Alignment explanation
Indices: 80650090--80650150 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
80650080 GTTAGCATGA
80650090 ATATAAGGTGATTTGGGCCTAACAGGCC
1 ATATAAGGTGATTTGGGCCTAACAGGCC
* *
80650118 ATATAAAGGTTATTTGGGCCTAATAGGCC
1 ATAT-AAGGTGATTTGGGCCTAACAGGCC
80650147 ATAT
1 ATAT
80650151 GAATATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCCTAACAGGCC
Found at i:80650163 original size:29 final size:29
Alignment explanation
Indices: 80650097--80650213 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
80650087 TGAATATAAG
* * * *
80650097 GTGATTTGGGCCTAACAGGCCATATAAAG
1 GTGAATTGGGCCTAATAAGCCATATAAAT
* * * *
80650126 GTTATTTGGGCCTAATAGGCCATATGAAT
1 GTGAATTGGGCCTAATAAGCCATATAAAT
* * * *
80650155 ATGAATTGGGTCTGATAAGCCATAAAAAT
1 GTGAATTGGGCCTAATAAGCCATATAAAT
*
80650184 GTGAATTGGGCCTAATAAGCCATATGAAT
1 GTGAATTGGGCCTAATAAGCCATATAAAT
80650213 G
1 G
80650214 AGATGGGCCA
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (29 bp):
GTGAATTGGGCCTAATAAGCCATATAAAT
Found at i:80656749 original size:56 final size:55
Alignment explanation
Indices: 80656624--80656764 Score: 133
Period size: 56 Copynumber: 2.5 Consensus size: 55
80656614 CTAGATTCGG
* * * * *
80656624 GAGCTTGT-ATAGCCCCGTTGAGATGCATGTAATTATGTGGTATACGCTAGGTCTGA
1 GAGCTTATGATAGCCCCGTTGAGAGGC--GTGATTATGTGATACACGCTAGGTCTGA
* * *
80656680 GAGCTTATG-TAGCCCCGTTGAGAGGCGTGATTATGTGATGCATGCTAGGTCTGG
1 GAGCTTATGATAGCCCCGTTGAGAGGCGTGATTATGTGATACACGCTAGGTCTGA
* * **
80656734 GTGCTTTTAGATAGCCCTATTGAGAGGCGTG
1 GAGCTTAT-GATAGCCCCGTTGAGAGGCGTG
80656765 CTATGTTATG
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
54 28 0.40
55 1 0.01
56 41 0.59
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.31
Consensus pattern (55 bp):
GAGCTTATGATAGCCCCGTTGAGAGGCGTGATTATGTGATACACGCTAGGTCTGA
Found at i:80661531 original size:38 final size:40
Alignment explanation
Indices: 80661485--80661624 Score: 135
Period size: 39 Copynumber: 3.6 Consensus size: 40
80661475 TCCTCGTTCA
* * *
80661485 AATGCCTTCGGGACATAGCCC-GTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
* * *
80661523 AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
* * * * *
80661563 AATGCCTTCGGG-CTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
* *
80661602 AAGGCCTTCGGG-CTTAACCCGGA
1 AATGCCTTCGGGACATAACCCGGA
80661625 ACTTGTATCT
Statistics
Matches: 89, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
38 19 0.21
39 58 0.65
40 12 0.13
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
Found at i:80661586 original size:39 final size:37
Alignment explanation
Indices: 80661515--80661651 Score: 152
Period size: 39 Copynumber: 3.5 Consensus size: 37
80661505 CGTTTTAGTA
*
80661515 ACTCACACAATGCCTTCGGGACTTAACCCGGATTTAAT
1 ACTCGCACAATGCCTTCGGG-CTTAACCCGGATTTAAT
*
80661553 GACTCGCACGAATGCCTTCGGGCTTAACCCGGATTTAGT
1 -ACTCGCAC-AATGCCTTCGGGCTTAACCCGGATTTAAT
*
80661592 ATCTCGCACAAAGGCCTTCGGGCTTAACCCGGAACTTGT-AT
1 A-CTCGCAC-AATGCCTTCGGGCTTAACCCGG-A-TT-TAAT
80661633 -CTCGCACAAATGCCTTCGG
1 ACTCGCAC-AATGCCTTCGG
80661652 ATCTTAGTCC
Statistics
Matches: 87, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
38 1 0.01
39 69 0.79
40 13 0.15
41 3 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (37 bp):
ACTCGCACAATGCCTTCGGGCTTAACCCGGATTTAAT
Found at i:80661590 original size:78 final size:77
Alignment explanation
Indices: 80661483--80661705 Score: 220
Period size: 78 Copynumber: 2.8 Consensus size: 77
80661473 GCTCCTCGTT
* * *
80661483 CAAATGCCTTCGGGACATAGCCC-GTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
80661547 -TT-TAATGACTCGCA
65 CTTGT-AT--CTCGCA
* * * *
80661561 CGAATGCCTTCGGGCTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG-
80661625 ACTTGTATCTCGCA
64 ACTTGTATCTCGCA
* * * * * * *
80661639 CAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCGG
80661704 AC
64 AC
80661706 AGCATTCAAT
Statistics
Matches: 119, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
77 6 0.05
78 57 0.48
79 36 0.30
80 19 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAC
TTGTATCTCGCA
Found at i:80661713 original size:41 final size:41
Alignment explanation
Indices: 80661636--80661713 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
80661626 CTTGTATCTC
* * *
80661636 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
80661677 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
80661714 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:80669417 original size:39 final size:40
Alignment explanation
Indices: 80669372--80669596 Score: 224
Period size: 40 Copynumber: 5.7 Consensus size: 40
80669362 GCTCCTCGTT
* * * *
80669372 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
80669412 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
80669451 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
80669491 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
80669531 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
80669572 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
80669597 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 37 0.24
40 104 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:80669465 original size:40 final size:38
Alignment explanation
Indices: 80669339--80669596 Score: 200
Period size: 40 Copynumber: 6.5 Consensus size: 38
80669329 AAATCACGTA
* * *
80669339 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCG--CACAATG
* * * *
80669378 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAATG
*
80669417 CCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCAC-AATG
*
80669457 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCAC-AATG
* *
80669497 CCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGG-ATTTAGTA-CTCGCAC-AATG
** * * * *
80669537 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAATG
*
80669577 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
80669597 CAGCATTCAA
Statistics
Matches: 180, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.01
39 50 0.28
40 116 0.64
41 12 0.07
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (38 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAATG
Found at i:80669605 original size:41 final size:41
Alignment explanation
Indices: 80669528--80669605 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
80669518 CTTGTATCTC
* * *
80669528 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
80669569 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
80669606 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:80673474 original size:7 final size:7
Alignment explanation
Indices: 80673464--80673494 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
80673454 TAGAGAGAAT
80673464 GATGAGG
1 GATGAGG
80673471 GATGAGG
1 GATGAGG
*
80673478 GATGATG
1 GATGAGG
80673485 GATGAGG
1 GATGAGG
80673492 GAT
1 GAT
80673495 CAAATGAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.52, T:0.19
Consensus pattern (7 bp):
GATGAGG
Found at i:80675553 original size:40 final size:40
Alignment explanation
Indices: 80675490--80675664 Score: 210
Period size: 40 Copynumber: 4.3 Consensus size: 40
80675480 ATTATTTTTG
* * * *
80675490 GCACTTAGTGTGCATATCAAGATAACTTCGGCTATATAAA
1 GCACTTAGTGTGCGTATCGAGATAGCTTCAGCTATATAAA
*
80675530 GCACTTAGTGTGCGTATTGAGATAGCTTCAGCTATATAAA
1 GCACTTAGTGTGCGTATCGAGATAGCTTCAGCTATATAAA
*
80675570 GCACTTAATGTGCGTATCGAGATAGCTTCAGCTATATAAA
1 GCACTTAGTGTGCGTATCGAGATAGCTTCAGCTATATAAA
* * * *
80675610 GCACTTAGTGTG-GGAGACTGAGATAGCTTCGGCTATGA-AAG
1 GCACTTAGTGTGCGTA-TC-GAGATAGCTTCAGCTAT-ATAAA
*
80675651 GCACTTAATGTGCG
1 GCACTTAGTGTGCG
80675665 AGATTATAAT
Statistics
Matches: 118, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
39 2 0.02
40 85 0.72
41 29 0.25
42 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (40 bp):
GCACTTAGTGTGCGTATCGAGATAGCTTCAGCTATATAAA
Found at i:80675662 original size:81 final size:80
Alignment explanation
Indices: 80675489--80675664 Score: 237
Period size: 80 Copynumber: 2.2 Consensus size: 80
80675479 GATTATTTTT
* * * * *
80675489 GGCACTTAGTGTGCATATCAAGATAACTTCGGCTATATAAAGCACTTAGTGTGCGTATTGAGATA
1 GGCACTTAATGTGCGTATCAAGATAACTTCAGCTATATAAAGCACTTAGTGTGCGGACTGAGATA
80675554 GCTTCAGCTATATAA
66 GCTTCAGCTATATAA
* * * *
80675569 AGCACTTAATGTGCGTATCGAGATAGCTTCAGCTATATAAAGCACTTAGTGTGGGAGACTGAGAT
1 GGCACTTAATGTGCGTATCAAGATAACTTCAGCTATATAAAGCACTTAGTGTGCG-GACTGAGAT
*
80675634 AGCTTCGGCTATGA-AA
65 AGCTTCAGCTAT-ATAA
80675650 GGCACTTAATGTGCG
1 GGCACTTAATGTGCG
80675665 AGATTATAAT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 48 0.58
81 34 0.41
82 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (80 bp):
GGCACTTAATGTGCGTATCAAGATAACTTCAGCTATATAAAGCACTTAGTGTGCGGACTGAGATA
GCTTCAGCTATATAA
Found at i:80680045 original size:18 final size:17
Alignment explanation
Indices: 80680018--80680070 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
80680008 CTTCAAAAAT
80680018 AATT-AAAAGAAAGATAA
1 AATTAAAAAGAAA-ATAA
80680035 AATTAAAAAGAAAAATAA
1 AATTAAAAAG-AAAATAA
* *
80680053 AAATAAAAATAAAATAA
1 AATTAAAAAGAAAATAA
80680070 A
1 A
80680071 TAAATGGACT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 12 0.38
18 17 0.53
19 3 0.09
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (17 bp):
AATTAAAAAGAAAATAA
Found at i:80680048 original size:6 final size:6
Alignment explanation
Indices: 80680031--80680070 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
80680021 TAAAAGAAAG
* *
80680031 ATAAAA TTAAAA AGAAAA ATAAAA ATAAAA AT-AAA ATAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAA
80680071 TAAATGGACT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:80687587 original size:42 final size:43
Alignment explanation
Indices: 80687509--80687591 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 43
80687499 TCTTACATGT
* *
80687509 AATCAAATATCGATGTGACTGTCCCAGACAGGGTCTTACACAA
1 AATCAAATATCGATGCGACTGTCCCAAACAGGGTCTTACACAA
* *
80687552 AATCAAATA-CGATGCCGA-TGTCTCAAACATGGTCTTACAC
1 AATCAAATATCGATG-CGACTGTCCCAAACAGGGTCTTACAC
80687592 GTAAATCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 24 0.69
43 11 0.31
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (43 bp):
AATCAAATATCGATGCGACTGTCCCAAACAGGGTCTTACACAA
Found at i:80687598 original size:43 final size:44
Alignment explanation
Indices: 80687496--80687599 Score: 117
Period size: 43 Copynumber: 2.4 Consensus size: 44
80687486 GTCCTAGACG
* * *
80687496 TGGTCTTACATGT-AATCAAATATCGATGTGACTGTCCCAGACA
1 TGGTCTTACACGTAAATCAAATATCGATGCGACTGTCCCAAACA
* * *
80687539 GGGTCTTACAC-AAAATCAAATA-CGATGCCGA-TGTCTCAAACA
1 TGGTCTTACACGTAAATCAAATATCGATG-CGACTGTCCCAAACA
80687581 TGGTCTTACACGTAAATCA
1 TGGTCTTACACGTAAATCA
80687600 TAAGTCGATG
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
42 24 0.48
43 26 0.52
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (44 bp):
TGGTCTTACACGTAAATCAAATATCGATGCGACTGTCCCAAACA
Found at i:80690154 original size:17 final size:18
Alignment explanation
Indices: 80690132--80690166 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
80690122 TCACGTTGAA
80690132 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
80690149 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
80690167 CTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:80690915 original size:27 final size:26
Alignment explanation
Indices: 80690884--80690938 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
80690874 ATTTAACACC
* * *
80690884 TAGGGGTATTTTGGTCATTTCCACCTT
1 TAGGGGCATTTCGGTAATTTCC-CCTT
*
80690911 TAGGGGCATTTCGGTAATTTTCCCTT
1 TAGGGGCATTTCGGTAATTTCCCCTT
80690937 TA
1 TA
80690939 TTACGGTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.44
Consensus pattern (26 bp):
TAGGGGCATTTCGGTAATTTCCCCTT
Found at i:80691270 original size:29 final size:29
Alignment explanation
Indices: 80691219--80691306 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
80691209 TGGCCCATCT
* * * *
80691219 CATTCATATGGCCCATCAAGCCCAATTCA
1 CATTCATATGGCCGATTAGGCCCAAATCA
*
80691248 TATTCATATGGCCGATTAGGCCCAAATCA
1 CATTCATATGGCCGATTAGGCCCAAATCA
* *
80691277 CCTTTATATGGCCCG-TTAGGCCCAAATCA
1 CATTCATATGG-CCGATTAGGCCCAAATCA
80691306 C
1 C
80691307 CTTATATTCA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
29 47 0.94
30 3 0.06
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
CATTCATATGGCCGATTAGGCCCAAATCA
Found at i:80691307 original size:29 final size:28
Alignment explanation
Indices: 80691253--80691313 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 28
80691243 ATTCATATTC
80691253 ATATGGCCGATTAGGCCCAAATCACCTTT
1 ATATGGCCGATTAGGCCCAAATCACC-TT
80691282 ATATGGCCCG-TTAGGCCCAAATCACCTT
1 ATATGG-CCGATTAGGCCCAAATCACCTT
80691310 ATAT
1 ATAT
80691314 TCATGCTCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
28 6 0.19
29 22 0.71
30 3 0.10
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (28 bp):
ATATGGCCGATTAGGCCCAAATCACCTT
Found at i:80691567 original size:16 final size:16
Alignment explanation
Indices: 80691524--80691567 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
80691514 GCAGCCAAAC
*
80691524 TTTTGGCTTTTCGGCG
1 TTTTGGCTTTTCGGCA
* * *
80691540 TTTCGGCATTTCGGTA
1 TTTTGGCTTTTCGGCA
80691556 TTTTGGCTTTTC
1 TTTTGGCTTTTC
80691568 AGCTTTTACC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.05, C:0.18, G:0.25, T:0.52
Consensus pattern (16 bp):
TTTTGGCTTTTCGGCA
Found at i:80692784 original size:16 final size:16
Alignment explanation
Indices: 80692763--80692794 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80692753 AAGTTCAGGA
80692763 TTTTGGGATTTTTGGG
1 TTTTGGGATTTTTGGG
*
80692779 TTTTGGGGTTTTTGGG
1 TTTTGGGATTTTTGGG
80692795 GCGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.03, C:0.00, G:0.41, T:0.56
Consensus pattern (16 bp):
TTTTGGGATTTTTGGG
Found at i:80699055 original size:14 final size:15
Alignment explanation
Indices: 80699031--80699059 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80699021 TATTCTTCCT
80699031 TTTTATTTTTTCTTC
1 TTTTATTTTTTCTTC
80699046 TTTT-TTTTTTCTTC
1 TTTTATTTTTTCTTC
80699060 ACCAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTATTTTTTCTTC
Found at i:80700246 original size:27 final size:26
Alignment explanation
Indices: 80700206--80700317 Score: 89
Period size: 27 Copynumber: 4.2 Consensus size: 26
80700196 AGGAAGCGTC
*
80700206 CTGGCGGCTATGCCACAATCATCTGAT
1 CTGGTGGCTATGCCACAAT-ATCTGAT
* *
80700233 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACA-ATATCTGAT
* * *
80700260 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTATGCCAC-AATATCTG-AT
* * * * *
80700288 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATATCTGAT
80700314 CTGG
1 CTGG
80700318 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 5 0.07
27 49 0.69
28 17 0.24
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTATGCCACAATATCTGAT
Found at i:80707318 original size:27 final size:26
Alignment explanation
Indices: 80707286--80707397 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
80707276 AGGAAGCGTC
*
80707286 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
80707313 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
* *
80707340 CTGGTGGCTCTCCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCA-CATTATCTG-AT
* * * *
80707368 CTAGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
80707394 CTGG
1 CTGG
80707398 CAGCTATGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
26 7 0.10
27 48 0.69
28 14 0.20
29 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:80710879 original size:49 final size:48
Alignment explanation
Indices: 80710806--80711037 Score: 221
Period size: 49 Copynumber: 4.7 Consensus size: 48
80710796 CTGGTATGCA
* * * *
80710806 TAGTAGCCTGAACTTTGTACTACACATGCGACCAATTATTCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTA-TCGGTACACG
* * * ** *
80710855 TAGTATCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGAC-CAATTATC-GGTACACG
* * * * *
80710905 TAGTAGCCTGCACTTAGTACTACGCACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATC-GGTACACG
* * * *
80710956 TAGTAGCCTACACTTAGAACTACACATGCGACCAATTATTTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTA-TCGGTACACG
*
80711005 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
80711038 TCACAATAGA
Statistics
Matches: 146, Mismatches: 32, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
49 67 0.46
50 44 0.30
51 35 0.24
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGTACACG
Found at i:80727117 original size:50 final size:49
Alignment explanation
Indices: 80726999--80727128 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 49
80726989 CTGGTACGCA
* * **
80726999 TAGTAGCCTGCACTTAGTACTACAAATGTGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCAGTACACG
*
80727048 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-CTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCAG-TACACG
*
80727098 TAGTAGCCTGCACTTAGTACTACACCCGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
80727129 TCGAAGTTAT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 33 0.45
50 40 0.55
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCAGTACACG
Found at i:80747753 original size:48 final size:48
Alignment explanation
Indices: 80747682--80747998 Score: 325
Period size: 48 Copynumber: 6.6 Consensus size: 48
80747672 AATGAGATTC
* *
80747682 TGTGTAAGACCATGTCTGGGACATGGAAACGTCGATGATATATGTGCT
1 TGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATATATGTGCT
* * *
80747730 TGTGTAAGACCATGTCGGGGACATGGCATCGGCGATGATATGTGTGCT
1 TGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATATATGTGCT
* * *
80747778 AGTGTAAGACCATGTCTAGGACATGGCATCGGT-GATGATATATGTGCC
1 TGTGTAAGACCATGTCTGGGACATGGCATC-GTCGATGATATATGTGCT
** * * * *
80747826 AATGTAAGACCATATCTAGGACATGGCATCAGT-GATGATATATGTACC
1 TGTGTAAGACCATGTCTGGGACATGGCATC-GTCGATGATATATGTGCT
* * *** * *
80747874 TGTGTAAGACCATGTCTGAGACATGGGATCAAAGATGATATGTGTGAT
1 TGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATATATGTGCT
* * * * * *
80747922 AGTGTAAGACCATGTTTGGGACATGGCATCGACAATGATATGTG-GAT
1 TGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATATATGTGCT
* *
80747969 TCATGTAAGACCATGTCGGGGACATGGCAT
1 T-GTGTAAGACCATGTCTGGGACATGGCAT
80747999 TGGTACTTAT
Statistics
Matches: 228, Mismatches: 38, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
47 3 0.01
48 224 0.98
49 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (48 bp):
TGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATATATGTGCT
Found at i:80747975 original size:144 final size:144
Alignment explanation
Indices: 80747684--80747998 Score: 393
Period size: 144 Copynumber: 2.2 Consensus size: 144
80747674 TGAGATTCTG
* * * * *
80747684 TGTAAGACCATGTCTGGGACATGGAAACGTCGATGATATATGTGCTTGTGTAAGACCATGTCGGG
1 TGTAAGACCATGTCTGGGACATGGCATCGTCGATGATATATGTACCTGTGTAAGACCATGTCGGA
*** * ***
80747749 GACATGGCATCGGCGATGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGTGAT
66 GACATGGCATCAAAGATGATATGTGTGATAGTGTAAGACCATGTCTAGGACATGGCATCGACAAT
80747814 GATATATGTGCCAA
131 GATATATGTGCCAA
* * *
80747828 TGTAAGACCATATCTAGGACATGGCATCAGT-GATGATATATGTACCTGTGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATC-GTCGATGATATATGTACCTGTGTAAGACCATGTCGG
* * *
80747892 AGACATGGGATCAAAGATGATATGTGTGATAGTGTAAGACCATGTTTGGGACATGGCATCGACAA
65 AGACATGGCATCAAAGATGATATGTGTGATAGTGTAAGACCATGTCTAGGACATGGCATCGACAA
* *
80747957 TGATATGTG-GATTC-A
130 TGATATATGTG--CCAA
*
80747972 TGTAAGACCATGTCGGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
80747999 TGGTACTTAT
Statistics
Matches: 145, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
143 1 0.01
144 141 0.97
145 3 0.02
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (144 bp):
TGTAAGACCATGTCTGGGACATGGCATCGTCGATGATATATGTACCTGTGTAAGACCATGTCGGA
GACATGGCATCAAAGATGATATGTGTGATAGTGTAAGACCATGTCTAGGACATGGCATCGACAAT
GATATATGTGCCAA
Found at i:80754859 original size:34 final size:34
Alignment explanation
Indices: 80754821--80754887 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
80754811 TGTGAATGAA
*
80754821 AAATATGGGTTCGTATAAGAGGGAAAATGATTCT
1 AAATATGGGCTCGTATAAGAGGGAAAATGATTCT
80754855 AAATATGGGCTCGTATAAGAGGGAAAATGATTC
1 AAATATGGGCTCGTATAAGAGGGAAAATGATTC
80754888 GGCTAGGGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (34 bp):
AAATATGGGCTCGTATAAGAGGGAAAATGATTCT
Found at i:80755416 original size:48 final size:47
Alignment explanation
Indices: 80755345--80755659 Score: 330
Period size: 48 Copynumber: 6.6 Consensus size: 47
80755335 TGAGATTTTA
80755345 TGTAAGACCATGTCTGGGACATGGCATCATGGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCA-GGATGATATATGTGCCTG
* *
80755393 TGTAAGACCATGTCCGGGACATGGCATCAGTGATGATATGTGTG-CTAG
1 TGTAAGACCATGTCTGGGACATGGCATCAG-GATGATATATGTGCCT-G
*
80755441 TGTAAGACCATGTCTGGGACATGGCATC-GGCTATGATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGG--ATGATATATGTGCCTG
* * * * **
80755489 TGTAAGACCATGTCTAGGACCTGGCATCAAAGATGATACATGAACCTG
1 TGTAAGACCATGTCTGGGACATGGCATC-AGGATGATATATGTGCCTG
* * * * * * *
80755537 TGTAGGACTATGTCTGGGACATGGCATTGATGATGGTATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCA-TCAGGATGATATATGTGCCTG
* * ** *
80755585 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTG-GATTCA
1 TGTAAGACCATGTCTGGGACATGGCATCAG-GATGATATATGTGCCT-G
*
80755633 TGTAAGACCATGTCGGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
80755660 TGGTACTTAT
Statistics
Matches: 222, Mismatches: 35, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
46 1 0.00
47 6 0.03
48 212 0.95
49 2 0.01
50 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGGATGATATATGTGCCTG
Found at i:80755605 original size:144 final size:144
Alignment explanation
Indices: 80755345--80755659 Score: 420
Period size: 144 Copynumber: 2.2 Consensus size: 144
80755335 TGAGATTTTA
* ** * **
80755345 TGTAAGACCATGTCTGGGACATGGCATCATGGATGATATATGTGCCTGTGTAAGACCATGTCCGG
1 TGTAAGACCATGTCTAGGACATGGCATCAAAGATGATACATGAACCTGTGTAAGACCATGTCCGG
* *
80755410 GACATGGCATCAGTGATGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAT
66 GACATGGCATCAGTGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGAT
80755475 GATATATGTGCCAG
131 GATATATGTGCCAG
* * * *
80755489 TGTAAGACCATGTCTAGGACCTGGCATCAAAGATGATACATGAACCTGTGTAGGACTATGTCTGG
1 TGTAAGACCATGTCTAGGACATGGCATCAAAGATGATACATGAACCTGTGTAAGACCATGTCCGG
* *
80755554 GACATGGCAT-TGATGATGGTATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
66 GACATGGCATCAG-TGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
* *
80755618 TGATATGTG-GATTCA-
130 TGATATATGTG--CCAG
**
80755633 TGTAAGACCATGTCGGGGACATGGCAT
1 TGTAAGACCATGTCTAGGACATGGCAT
80755660 TGGTACTTAT
Statistics
Matches: 149, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
143 2 0.01
144 145 0.97
145 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (144 bp):
TGTAAGACCATGTCTAGGACATGGCATCAAAGATGATACATGAACCTGTGTAAGACCATGTCCGG
GACATGGCATCAGTGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGAT
GATATATGTGCCAG
Found at i:80765919 original size:20 final size:20
Alignment explanation
Indices: 80765894--80765932 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
80765884 AGAGTAAACG
80765894 TACCGAATAATTAGCATACT
1 TACCGAATAATTAGCATACT
*
80765914 TACCGAGTAATTAGCATAC
1 TACCGAATAATTAGCATAC
80765933 ATCCATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (20 bp):
TACCGAATAATTAGCATACT
Found at i:80771673 original size:40 final size:40
Alignment explanation
Indices: 80771603--80771751 Score: 221
Period size: 40 Copynumber: 3.7 Consensus size: 40
80771593 TGGATGATAA
* *
80771603 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
80771643 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
80771683 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
80771723 CGAAGGCATTTGAGCGAG-TAGCTATATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCC
80771752 AGTTAAATCC
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
39 2 0.02
40 98 0.97
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:80787040 original size:39 final size:39
Alignment explanation
Indices: 80786934--80787149 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 39
80786924 CGAATGATAA
* *
80786934 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGATTATAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACTATAT
*
80786974 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTATAT
80787014 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATAT
*
80787053 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATGT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTATAT
* *
80787093 CCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAG-TGACTATAT
*
80787132 CC-GGCTAAATTCCGAAGG
1 CCGGGCT-AAGTCCGAAGG
80787150 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
38 4 0.02
39 73 0.44
40 88 0.53
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATAT
Found at i:80787076 original size:79 final size:79
Alignment explanation
Indices: 80786934--80787149 Score: 328
Period size: 79 Copynumber: 2.7 Consensus size: 79
80786924 CGAATGATAA
* *
80786934 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
80786999 TGCTAGTGATTATAT
65 TGCTAGTGACTATAT
80787014 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
80787079 GCTAGTGACTATGT
66 GCTAGTGACTATAT
* * * *
80787093 CCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
80787150 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
78 14 0.11
79 102 0.80
80 11 0.09
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCTAGTGACTATAT
Found at i:80794940 original size:40 final size:40
Alignment explanation
Indices: 80794892--80795094 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
80794882 GGACTAAGAT
*
80794892 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
80794932 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
80794972 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
80795012 CCGAAGGCATTTGTGCTAGTGAC--TA-CCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
80795049 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
80795088 CCGAAGG
1 CCGAAGG
80795095 TAGTTGGGTT
Statistics
Matches: 154, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
37 30 0.19
38 4 0.03
39 16 0.10
40 104 0.68
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:80803825 original size:19 final size:18
Alignment explanation
Indices: 80803797--80803832 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
80803787 TACACGGCCT
80803797 AGGGACACGGGCATGTCA
1 AGGGACACGGGCATGTCA
*
80803815 AGGGCACACGGGCGTGTC
1 AGGG-ACACGGGCATGTC
80803833 CTTGTGTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.22, C:0.25, G:0.42, T:0.11
Consensus pattern (18 bp):
AGGGACACGGGCATGTCA
Found at i:80804613 original size:43 final size:42
Alignment explanation
Indices: 80804543--80804708 Score: 149
Period size: 43 Copynumber: 3.8 Consensus size: 42
80804533 CAATGCCAAC
* * *
80804543 GTCCCAGACGTGGTCCTACATGTAATCAAATATCGATGCCATT
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCA-T
*
80804586 GTCCCAGACAG-GGTCTTACACGAAATCAAATAT-GATGCTGAT
1 GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCGATGC-CAT
* * *
80804628 GTCCCAGACATGGTCTTACACACGTAAATCATAA-GTCGATGCCAAC
1 GTCCCAGACGTGGTCTT--ACACG-AAATCA-AATATCGATGCC-AT
* * *
80804674 GTCCCAGACGTGGGCTTACACGAAAACACATATCG
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCG
80804709 GATCCTATGT
Statistics
Matches: 100, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 22 0.22
43 37 0.37
44 11 0.11
45 7 0.07
46 23 0.23
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCAT
Found at i:80813685 original size:18 final size:17
Alignment explanation
Indices: 80813662--80813705 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
80813652 TGAAGTTCAT
80813662 TGAATTGGTATGAACATA
1 TGAATTGGTATG-ACATA
80813680 TGAATTGTGT-TGACATA
1 TGAATTG-GTATGACATA
80813697 -GAATTGGTA
1 TGAATTGGTA
80813706 GATGATTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 2 0.08
16 6 0.25
17 5 0.21
18 9 0.38
19 2 0.08
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (17 bp):
TGAATTGGTATGACATA
Found at i:80821263 original size:30 final size:30
Alignment explanation
Indices: 80821229--80821289 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80821219 TCCTTAACTC
*
80821229 AAACTTTGGGAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
80821259 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
80821289 A
1 A
80821290 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:80822583 original size:40 final size:40
Alignment explanation
Indices: 80822525--80822635 Score: 125
Period size: 40 Copynumber: 2.8 Consensus size: 40
80822515 TTATGTTTGG
* * * *
80822525 CACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAAA
1 CACTTAGTATGCGAATCGAAATAGCTTCAGCTATATAAAA
***
80822565 CACTTAGTATGCGAATCGAAATAGCTTCAGCTATATATGG
1 CACTTAGTATGCGAATCGAAATAGCTTCAGCTATATAAAA
*
80822605 CACTTAGTATGCG-ATACTAAGATAGCTTCAG
1 CACTTAGTATGCGAAT-CGAA-ATAGCTTCAG
80822636 ATATGAAAGG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.03
40 49 0.80
41 10 0.16
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30
Consensus pattern (40 bp):
CACTTAGTATGCGAATCGAAATAGCTTCAGCTATATAAAA
Found at i:80822652 original size:41 final size:40
Alignment explanation
Indices: 80822523--80822653 Score: 122
Period size: 40 Copynumber: 3.2 Consensus size: 40
80822513 GATTATGTTT
* * * * *
80822523 GGCACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAA
1 GGCACTTAGTATGCGAATCGAAATAGCTTCAGATATATAA
** * *
80822563 AACACTTAGTATGCGAATCGAAATAGCTTCAGCTATATAT
1 GGCACTTAGTATGCGAATCGAAATAGCTTCAGATATATAA
*
80822603 GGCACTTAGTATGCG-ATACTAAGATAGCTTCAGATATGA-AA
1 GGCACTTAGTATGCGAAT-CGAA-ATAGCTTCAGATAT-ATAA
*
80822644 GGCGCTTAGT
1 GGCACTTAGT
80822654 GTGTGACTTA
Statistics
Matches: 75, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.03
40 49 0.65
41 23 0.31
42 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (40 bp):
GGCACTTAGTATGCGAATCGAAATAGCTTCAGATATATAA
Done.