Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 254 of 325
Found at i:80822883 original size:40 final size:40
Alignment explanation
Indices: 80822839--80822970 Score: 117
Period size: 40 Copynumber: 3.3 Consensus size: 40
80822829 TTATGTTTTC
* * *
80822839 CACTTAGTGTGTGTATC-GAGATAGCTTTGGCTATATAACG
1 CACTTAGTGTGTGAATCGGAG-TAGCTTCGACTATATAACG
* * **
80822879 CACTTAATGTGTGAATTGGAGTAGCTTCGACTATATATGG
1 CACTTAGTGTGTGAATCGGAGTAGCTTCGACTATATAACG
* * *
80822919 CACTTAGTGTGCGAGA-CTGAGATAGCTTCGACTATGA-AAGG
1 CACTTAGTGTGTGA-ATCGGAG-TAGCTTCGACTAT-ATAACG
80822960 CACTTAGTGTG
1 CACTTAGTGTG
80822971 CGAGATTATA
Statistics
Matches: 76, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
40 44 0.58
41 31 0.41
42 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (40 bp):
CACTTAGTGTGTGAATCGGAGTAGCTTCGACTATATAACG
Found at i:80822947 original size:314 final size:312
Alignment explanation
Indices: 80822357--80822970 Score: 838
Period size: 314 Copynumber: 2.0 Consensus size: 312
80822347 ACATAGATCA
* * * *
80822357 AGGCAAGAATAAAGTACTCAACTAATCGACTAGTTTCGTCGTTTTTACGTATGAGGTAAGTTAGT
1 AGGCAAGAATAAAGTACTCAACTAATCGACTACTTTCATCATTTTTACGTATAAGGTAAGTTAGT
* * * * * * *
80822422 ATATGATAAACATTGTTACAATTATATTTTTATTGCTTTAATATTGTATAAATTATATATATGAG
66 ACATAATAAACATTGTTACAATTATATCTTTAATGCTTTAATATTGCATAAATTATATATATCAA
* *
80822487 ACAATGGTTGTGTATGACAATGAATTGATTATGTTTGGCACTTAGTGTGCGTATCGAGATAGCTT
131 ACAATGGTTGTGTATGACAATGAATCGATTATGTTTGCCACTTAGTGTGCGTATCGAGATAGCTT
*
80822552 CGGCTATATAAAACACTTAGTATGCGAATCGAAATAGCTTCAGCTATATATGGCACTTAGTATGC
196 CGGCTATATAAAACACTTAATATGCGAATCGAAATAGCTTCAGCTATATATGGCACTTAGTATGC
* *
80822617 GATACTAAGATAGCTTCAGA-TATGAAAGGCGCTTAGTGTGTGACTTAGATTG
261 GAGACTAAGATAGCTTC-GACTATGAAAGGCACTTAGTGTGTGACTTAGATTG
* *
80822669 AGGCAAGAATAAAGTACTCGACTAATCGACTACTTTCATCATTTTTACGTCTAAGGTAAGTTCA-
1 AGGCAAGAATAAAGTACTCAACTAATCGACTACTTTCATCATTTTTACGTATAAGGTAAGTT-AG
* *
80822733 TACGTAATAAACATTGTTACAATTATGTCTTTAATGCTTTAATATTGCATAAATTATATATATAT
65 TACATAATAAACATTGTTACAATTATATCTTTAATGCTTTAATATTGCATAAA-T-TATATATAT
* * ** * *
80822798 CAAACGATGGTTTTGTATGATGATGAATCGATTATGTTTTCCACTTAGTGTGTGTATCGAGATAG
128 CAAACAATGGTTGTGTATGACAATGAATCGATTATGTTTGCCACTTAGTGTGCGTATCGAGATAG
* ** * * * * *
80822863 CTTTGGCTATATAACGCACTTAATGTGTGAATTGGAGTAGCTTC-GACTATATATGGCACTTAGT
193 CTTCGGCTATATAAAACACTTAATATGCGAATCGAAATAGCTTCAG-CTATATATGGCACTTAGT
* *
80822927 GTGCGAGACTGAGATAGCTTCGACTATGAAAGGCACTTAGTGTG
257 ATGCGAGACTAAGATAGCTTCGACTATGAAAGGCACTTAGTGTG
80822971 CGAGATTATA
Statistics
Matches: 261, Mismatches: 36, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
312 102 0.39
313 5 0.02
314 154 0.59
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.36
Consensus pattern (312 bp):
AGGCAAGAATAAAGTACTCAACTAATCGACTACTTTCATCATTTTTACGTATAAGGTAAGTTAGT
ACATAATAAACATTGTTACAATTATATCTTTAATGCTTTAATATTGCATAAATTATATATATCAA
ACAATGGTTGTGTATGACAATGAATCGATTATGTTTGCCACTTAGTGTGCGTATCGAGATAGCTT
CGGCTATATAAAACACTTAATATGCGAATCGAAATAGCTTCAGCTATATATGGCACTTAGTATGC
GAGACTAAGATAGCTTCGACTATGAAAGGCACTTAGTGTGTGACTTAGATTG
Found at i:80822985 original size:41 final size:41
Alignment explanation
Indices: 80822859--80822988 Score: 122
Period size: 41 Copynumber: 3.2 Consensus size: 41
80822849 GTGTATCGAG
* * * * * * *
80822859 ATAGCTTTGGCTATATAACGCACTTAATGTGTGA-ATTGGA
1 ATAGCTTCGACTATATAAGGCACTTAGTGTGCGAGACTGAA
* * *
80822899 GTAGCTTCGACTATATATGGCACTTAGTGTGCGAGACTGAG
1 ATAGCTTCGACTATATAAGGCACTTAGTGTGCGAGACTGAA
*
80822940 ATAGCTTCGACTATGA-AAGGCACTTAGTGTGCGAGA-TTATA
1 ATAGCTTCGACTAT-ATAAGGCACTTAGTGTGCGAGACTGA-A
80822981 ATAGCTTC
1 ATAGCTTC
80822989 AGCTATGCTC
Statistics
Matches: 73, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
40 29 0.40
41 43 0.59
42 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (41 bp):
ATAGCTTCGACTATATAAGGCACTTAGTGTGCGAGACTGAA
Found at i:80822995 original size:41 final size:41
Alignment explanation
Indices: 80822900--80823018 Score: 111
Period size: 41 Copynumber: 2.9 Consensus size: 41
80822890 TGAATTGGAG
* *
80822900 TAGCTTCGACTAT--ATATGGCACTTAGTGTGCGAGACTGAGA
1 TAGCTTCGACTATGCA-AAGGCACTTAGTGTGCGAGA-TGAAA
*
80822941 TAGCTTCGACTATG-AAAGGCACTTAGTGTGCGAGATTATAA
1 TAGCTTCGACTATGCAAAGGCACTTAGTGTGCGAGATGA-AA
*** *
80822982 TAGCTTC-AGCTATGCTCTGGCACTTAGTGTGTGAGAT
1 TAGCTTCGA-CTATGCAAAGGCACTTAGTGTGCGAGAT
80823019 ATCGAATATT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
40 3 0.04
41 45 0.67
42 19 0.28
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (41 bp):
TAGCTTCGACTATGCAAAGGCACTTAGTGTGCGAGATGAAA
Found at i:80826166 original size:27 final size:27
Alignment explanation
Indices: 80826127--80826268 Score: 142
Period size: 27 Copynumber: 5.3 Consensus size: 27
80826117 CCCTGTTTAG
* * *
80826127 AATA-CCTTAGTTTACCAAATTATCAA
1 AATACCCTTGGTTTACAAAATTACCAA
**
80826153 AATACCCTTGGTTTGTAAAATTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
*
80826180 AATACCCTTGGTTTACAAAATTATCAA
1 AATACCCTTGGTTTACAAAATTACCAA
* **
80826207 AATACCCCTGGTTTGTAAAATTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
* * *** *
80826234 AATACCCCTGATTTGTGAAATTACTAA
1 AATACCCTTGGTTTACAAAATTACCAA
80826261 AATACCCT
1 AATACCCT
80826269 CGACCTGTAA
Statistics
Matches: 99, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 4 0.04
27 95 0.96
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AATACCCTTGGTTTACAAAATTACCAA
Found at i:80826208 original size:54 final size:54
Alignment explanation
Indices: 80826127--80826240 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 54
80826117 CCCTGTTTAG
* *
80826127 AATA-CCTTAGTTTACCAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
1 AATACCCTTAGTTTACAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAA
*
80826180 AATACCCTTGGTTTACAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAA
1 AATACCCTTAGTTTACAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAA
80826234 AATACCC
1 AATACCC
80826241 CTGATTTGTG
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 4 0.07
54 53 0.93
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
AATACCCTTAGTTTACAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAA
Found at i:80826281 original size:27 final size:27
Alignment explanation
Indices: 80826143--80826321 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
80826133 TTAGTTTACC
* * **
80826143 AAATTATCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGACTTGTA
* ** **
80826170 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGACTTGTA
* **
80826197 AAATTATCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GACTTGTA
* *
80826224 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GACTTGTA
* *
80826251 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGACTTGTA
***
80826278 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGACTTGTA
*
80826305 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
80826322 CTGATTTATA
Statistics
Matches: 129, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
27 128 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGACTTGTA
Found at i:80826281 original size:81 final size:81
Alignment explanation
Indices: 80826143--80826339 Score: 216
Period size: 81 Copynumber: 2.4 Consensus size: 81
80826133 TTAGTTTACC
* * * * ***
80826143 AAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTATCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGACCTACAAAATTATCAAA
**
80826208 ATACCC-CTGGTTTGTA
66 ATACCCTC-GACTTGTA
* * ** **
80826224 AAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGACCTACAAAATTATCAAA
80826289 ATACCCTCGACTTGTA
66 ATACCCTCGACTTGTA
* * *
80826305 AAATTACCAAAGTACCCCTGATTTATAGAATTACC
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACC
80826340 GTTTTACCTT
Statistics
Matches: 95, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
81 94 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGACCTACAAAATTATCAAA
ATACCCTCGACTTGTA
Found at i:80826393 original size:27 final size:27
Alignment explanation
Indices: 80826363--80826590 Score: 253
Period size: 27 Copynumber: 8.4 Consensus size: 27
80826353 TTTACAAAAT
*
80826363 TACCGAAATA-ACCTAGTAGGGTAGAAA
1 TACCGAAATACCCCT-GTAGGGTAGAAA
*
80826390 TACCGAAATACCCCTATAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
80826417 TATCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
80826444 TACTGAAATACCCCTGTAGGGTACAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
*
80826471 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
80826498 TATCGCAATACCCCTATAGGGTA-AAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
80826524 TTACTGAAATACCCCTGTAGGGTAGAAT
1 -TACCGAAATACCCCTGTAGGGTAGAAA
** * * *
80826552 TACTAAAATACCCCTATAGGGTGGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
*
80826579 TACCGAGATACC
1 TACCGAAATACC
80826591 TTGTGGGGTA
Statistics
Matches: 173, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 166 0.96
28 5 0.03
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAA
Found at i:80826446 original size:81 final size:81
Alignment explanation
Indices: 80826358--80826608 Score: 326
Period size: 81 Copynumber: 3.1 Consensus size: 81
80826348 TTCGATTTAC
* * *
80826358 AAAATTACCGAAATA-ACCTAGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAAATATCG
1 AAAATTACCGAAATACCCCT-GTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCG
80826422 AAATACCCCTGTAGGGT
65 AAATACCCCTGTAGGGT
* * * * *
80826439 AGAATTACTGAAATACCCCTGTAGGGTACAATTACCGAAATACCCCTGTAGGGTAGAATTATCGC
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGA
*
80826504 AATACCCCTATAGGGT
66 AATACCCCTGTAGGGT
* ** * *
80826520 AAAATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTGGAATTACCGA
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGA
* * *
80826585 GATA-CCTTGTGGGGT
66 AATACCCCTGTAGGGT
80826600 AAAATTACC
1 AAAATTACC
80826609 ATTTTGCCCC
Statistics
Matches: 147, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
80 16 0.11
81 128 0.87
82 3 0.02
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (81 bp):
AAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTATCGA
AATACCCCTGTAGGGT
Found at i:80826580 original size:54 final size:54
Alignment explanation
Indices: 80826360--80826607 Score: 313
Period size: 54 Copynumber: 4.6 Consensus size: 54
80826350 CGATTTACAA
* * *
80826360 AATTACCGAAATA-ACCTAGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
* * * *
80826414 AAATATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
* *
80826468 AATTACCGAAATACCCCTGTAGGGTAGAATTA-TCGCAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTATAGGGTAG
* * *
80826522 AATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
* * * *
80826576 AATTACCGAGATA-CCTTGTGGGGTAAAATTAC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTAC
80826608 CATTTTGCCC
Statistics
Matches: 169, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
53 17 0.10
54 148 0.88
55 4 0.02
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
Found at i:80827087 original size:22 final size:22
Alignment explanation
Indices: 80827035--80827099 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
80827025 TTAAAGCCTT
* *
80827035 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
80827057 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
80827079 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
80827100 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:80827288 original size:27 final size:27
Alignment explanation
Indices: 80827258--80827359 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
80827248 ATTCTGTTAA
* *
80827258 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
80827285 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
80827312 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
80827339 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
80827360 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.11
27 52 0.80
28 6 0.09
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:80827541 original size:31 final size:31
Alignment explanation
Indices: 80827506--80827605 Score: 146
Period size: 31 Copynumber: 3.2 Consensus size: 31
80827496 TTTTGATTTT
* *
80827506 TGATTCTGTTACCTGATACTGATTTTGATTT
1 TGATTCTGTTACCTGATACTGATTCTGATTC
*
80827537 TGATTCTATTACCTGATACTGATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* * *
80827568 TGATTCTGTCACCTAATTCTGATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
80827599 TGATTCT
1 TGATTCT
80827606 AGTTCTGATA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
TGATTCTGTTACCTGATACTGATTCTGATTC
Found at i:80827558 original size:6 final size:6
Alignment explanation
Indices: 80827518--80827614 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
80827508 ATTCTGTTAC
* * * *
80827518 CTGATA CTGATT TTGATT TTGATT CT-ATT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
80827567 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
80827615 AATGTTTCTT
Statistics
Matches: 74, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
5 5 0.07
6 61 0.82
7 5 0.07
8 3 0.04
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:80829306 original size:22 final size:22
Alignment explanation
Indices: 80829280--80829322 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
80829270 ACTTGAAAAT
80829280 TTTAAAAATTTGAGAAATTTAA
1 TTTAAAAATTTGAGAAATTTAA
*
80829302 TTTAAAAATTTGAGCAATTTA
1 TTTAAAAATTTGAGAAATTTA
80829323 TTTGCCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (22 bp):
TTTAAAAATTTGAGAAATTTAA
Found at i:80838717 original size:53 final size:54
Alignment explanation
Indices: 80838637--80838843 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
80838627 TTCCTTTTTA
* * * *
80838637 AACTTATCACTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
80838690 AACTCACCATTGCCATGCCTTGGCATGGTCTTATATGGGATCCTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
80838744 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGAT-TACCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAT-CCTTGCCTTATAG
* *
80838799 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
80838844 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 44 0.36
54 38 0.31
55 40 0.33
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:80846527 original size:25 final size:25
Alignment explanation
Indices: 80846481--80846531 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
80846471 CCCTTATAAT
* *
80846481 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCTTTGTACCCCTAG
80846506 GTGAAAATGA-CTATTGTACCCCTAG
1 GTGAAAATGACCT-TTGTACCCCTAG
80846531 G
1 G
80846532 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
GTGAAAATGACCTTTGTACCCCTAG
Found at i:80846590 original size:10 final size:10
Alignment explanation
Indices: 80846575--80846609 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
80846565 TTTGTACATA
80846575 ATATGCCATG
1 ATATGCCATG
80846585 ATATGCACATG
1 ATATGC-CATG
*
80846596 ATATGACATG
1 ATATGCCATG
80846606 ATAT
1 ATAT
80846610 ATACATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:80846594 original size:21 final size:21
Alignment explanation
Indices: 80846570--80846609 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
80846560 ATTGATTTGT
*
80846570 ACATAATATGCCATGATATGC
1 ACATAATATGACATGATATGC
*
80846591 ACATGATATGACATGATAT
1 ACATAATATGACATGATAT
80846610 ATACATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGACATGATATGC
Found at i:80846615 original size:21 final size:19
Alignment explanation
Indices: 80846569--80846624 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 19
80846559 TATTGATTTG
*
80846569 TACATAATATGCCATGATATG
1 TACAT-ATATG-CATGATATA
*
80846590 CACATGATATGACATGATATA
1 TACAT-ATATG-CATGATATA
80846611 TACATATATGCATG
1 TACATATATGCATG
80846625 GGTTGGGTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 4 0.13
20 5 0.17
21 21 0.70
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (19 bp):
TACATATATGCATGATATA
Found at i:80846687 original size:25 final size:25
Alignment explanation
Indices: 80846655--80846724 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
80846645 GAGGAAGTGC
80846655 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
80846680 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
80846705 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
80846725 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:80846748 original size:50 final size:50
Alignment explanation
Indices: 80846655--80846749 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
80846645 GAGGAAGTGC
**
80846655 AAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAGGCCCCAGTTTACCG
**
80846705 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCAAAAAG-GGCTAGGCC-CCAGTT
80846750 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 24 0.62
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAGGCCCCAGTTTACCG
Found at i:80849051 original size:53 final size:53
Alignment explanation
Indices: 80848993--80849114 Score: 138
Period size: 53 Copynumber: 2.3 Consensus size: 53
80848983 AGGATACACG
* * * * *
80848993 GGTATCTTTTCTTTTTAAACAT-ACCATTGCCATGTCTTGACATGGTCTTACGT
1 GGTATCTTTGCCTTATAAAC-TCACCATTGCCATGCCTTGACATGGTCTTACAT
* * * *
80849046 GGTATCCTTGCCTTATGAACTCACCATTGTCATGCCTTGGCATGGTCTTACAT
1 GGTATCTTTGCCTTATAAACTCACCATTGCCATGCCTTGACATGGTCTTACAT
*
80849099 GGGATCTTTGCCTTAT
1 GGTATCTTTGCCTTAT
80849115 CGTAGTTTAT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
52 1 0.02
53 56 0.98
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (53 bp):
GGTATCTTTGCCTTATAAACTCACCATTGCCATGCCTTGACATGGTCTTACAT
Found at i:80851099 original size:7 final size:7
Alignment explanation
Indices: 80851087--80851124 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
80851077 CAGAGAGAAT
80851087 GATGAGG
1 GATGAGG
80851094 GATGAGG
1 GATGAGG
*
80851101 GATGATG
1 GATGAGG
*
80851108 GATGATG
1 GATGAGG
80851115 GATGAGG
1 GATGAGG
80851122 GAT
1 GAT
80851125 CAAATGAGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.29, C:0.00, G:0.50, T:0.21
Consensus pattern (7 bp):
GATGAGG
Found at i:80854018 original size:43 final size:43
Alignment explanation
Indices: 80853963--80854061 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
80853953 TTATTTAAAA
* * *
80853963 AAAACGCCGCTAAAAGCCATGGCCTTTAGCGGCGTTTGT-TGG
1 AAAACACCGCTAAAAGCCACGACCTTTAGCGGCGTTTGTATGG
** * *
80854005 AAAAGCACCGCTAAAAGTGACGACTTTTAGCGGCGTTTTTATGG
1 AAAA-CACCGCTAAAAGCCACGACCTTTAGCGGCGTTTGTATGG
*
80854049 AAAACGCCGCTAA
1 AAAACACCGCTAA
80854062 TTTTGACAGA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 4 0.09
43 36 0.77
44 7 0.15
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (43 bp):
AAAACACCGCTAAAAGCCACGACCTTTAGCGGCGTTTGTATGG
Found at i:80854170 original size:31 final size:31
Alignment explanation
Indices: 80854116--80854196 Score: 65
Period size: 31 Copynumber: 2.6 Consensus size: 31
80854106 TTCCTGCATT
* * * * *
80854116 AAAATCCAACCAAATACAACAAATATAA-TA
1 AAAATACAACCAAAAATAGCAAATATACATA
* * *
80854146 TAAAATGCAGCCAAAAATAGCAAATTTAGCATA
1 -AAAATACAACCAAAAATAGCAAATATA-CATA
80854179 AAAATACAACCAAAAATA
1 AAAATACAACCAAAAATA
80854197 TTAATTCTAA
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
31 21 0.54
32 16 0.41
33 2 0.05
ACGTcount: A:0.60, C:0.17, G:0.05, T:0.17
Consensus pattern (31 bp):
AAAATACAACCAAAAATAGCAAATATACATA
Found at i:80854453 original size:21 final size:21
Alignment explanation
Indices: 80854428--80854524 Score: 94
Period size: 21 Copynumber: 4.6 Consensus size: 21
80854418 TTTGCTGCCA
*
80854428 TCGCTGCAT-CCTCTGCCTCTC
1 TCGCTGC-TGCCTCTGCCTCCC
80854449 TCGCT-CGTGCCTCTGCCTCCC
1 TCGCTGC-TGCCTCTGCCTCCC
* *
80854470 TCGCTACTGCCACTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
80854491 TCGCTGCTG-CTGCTG-CTGCCC
1 TCGCTGCTGCCT-CTGCCT-CCC
*
80854512 TCTCTGCTGCCTC
1 TCGCTGCTGCCTC
80854525 CGCTCTAAGT
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
20 5 0.08
21 57 0.88
22 3 0.05
ACGTcount: A:0.03, C:0.48, G:0.19, T:0.30
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:80860105 original size:9 final size:9
Alignment explanation
Indices: 80860084--80860204 Score: 63
Period size: 9 Copynumber: 13.6 Consensus size: 9
80860074 TATATATTAC
*
80860084 GTAAGTTAA
1 GTAAGTTAT
80860093 GTAAGCTT-T
1 GTAAG-TTAT
80860102 GTAAGTTAT
1 GTAAGTTAT
80860111 GTAAGTTAT
1 GTAAGTTAT
* *
80860120 GTTA-TGAT
1 GTAAGTTAT
* *
80860128 ATACATTTAT
1 GTA-AGTTAT
**
80860138 GTAAGGCAT
1 GTAAGTTAT
80860147 GTAAGTTAT
1 GTAAGTTAT
* *
80860156 GATATGATAT
1 G-TAAGTTAT
* *
80860166 AT-ATTTAT
1 GTAAGTTAT
80860174 GT-A-TTAT
1 GTAAGTTAT
*
80860181 GTAAGTTGT
1 GTAAGTTAT
80860190 GTAAGTTAT
1 GTAAGTTAT
80860199 GATAAG
1 G-TAAG
80860205 ATATATATTT
Statistics
Matches: 83, Mismatches: 21, Indels: 15
0.70 0.18 0.13
Matches are distributed among these distances:
7 6 0.07
8 12 0.14
9 48 0.58
10 17 0.20
ACGTcount: A:0.34, C:0.02, G:0.21, T:0.43
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:80860225 original size:56 final size:56
Alignment explanation
Indices: 80860158--80860375 Score: 311
Period size: 56 Copynumber: 3.9 Consensus size: 56
80860148 TAAGTTATGA
*
80860158 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATT
*
80860214 TATGATATATATTTGGA-GTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
1 TATGATATATATTT--ATGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATT
* *
80860271 TATGAAATATATTTATGTATTATGTTAGTTGTGTAAGTTATGATATGATATATATT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATT
* * * *
80860327 TATG-TAT-TATGTAAGT-TT-TGTAAGTTATGTAAGTTATTATATGATATAT
1 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATATAT
80860376 GATAAATATT
Statistics
Matches: 148, Mismatches: 11, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
52 28 0.19
53 2 0.01
54 7 0.05
55 3 0.02
56 56 0.38
57 51 0.34
58 1 0.01
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (56 bp):
TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATT
Found at i:80860332 original size:43 final size:43
Alignment explanation
Indices: 80860271--80860355 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
80860261 GATACATATT
*
80860271 TATGAAATATATTTATGTATTATGTTAGTTGTGTAAGTTATGA
1 TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGA
* *
80860314 TATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATG
1 TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATG
80860356 TAAGTTATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.51
Consensus pattern (43 bp):
TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGA
Found at i:80860350 original size:9 final size:9
Alignment explanation
Indices: 80860290--80860363 Score: 55
Period size: 9 Copynumber: 8.4 Consensus size: 9
80860280 TATTTATGTA
*
80860290 TTATGTTAG
1 TTATGTAAG
*
80860299 TTGTGTAAG
1 TTATGTAAG
*
80860308 TTATGATATG
1 TTATG-TAAG
* * *
80860318 ATATAT-AT
1 TTATGTAAG
80860326 TTATGT-A-
1 TTATGTAAG
80860333 TTATGTAAG
1 TTATGTAAG
*
80860342 TTTTGTAAG
1 TTATGTAAG
80860351 TTATGTAAG
1 TTATGTAAG
80860360 TTAT
1 TTAT
80860364 TATATGATAT
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
7 6 0.12
8 6 0.12
9 32 0.64
10 6 0.12
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.51
Consensus pattern (9 bp):
TTATGTAAG
Found at i:80860368 original size:43 final size:43
Alignment explanation
Indices: 80860277--80860368 Score: 132
Period size: 43 Copynumber: 2.1 Consensus size: 43
80860267 TATTTATGAA
* *
80860277 ATATATTTATGTATTATGTTAGTTGTGTAAGTTATGATATGAT
1 ATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGAT
* *
80860320 ATATATTTATGTATTATGTAAGTTTTGTAAGTTATG-TAAGTT
1 ATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGAT
80860362 ATTATAT
1 A-TATAT
80860369 GATATATGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 5 0.11
43 39 0.89
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (43 bp):
ATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGAT
Found at i:80860373 original size:113 final size:113
Alignment explanation
Indices: 80860158--80860372 Score: 332
Period size: 113 Copynumber: 1.9 Consensus size: 113
80860148 TAAGTTATGA
*
80860158 TATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
1 TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
* * *
80860223 TATTTGGAGTATTATGTAAGTTGTGTAAGTTATGATATGATACATATT
66 TATGTGAAGTATTATGTAAGTTATGTAAGTTATGATATGATACATATT
* *
80860271 TATGAAATATATTTATGTATTATGTTAGTTGTGTAAGTTATGATATGATATATATTTATG-TAT-
1 TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
*
80860334 TATGT-AAGT-TT-TGTAAGTTATGTAAGTTATTATATGATA
66 TATGTGAAGTATTATGTAAGTTATGTAAGTTATGATATGATA
80860373 TATGATAAAT
Statistics
Matches: 95, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
108 26 0.27
109 2 0.02
110 3 0.03
111 4 0.04
112 3 0.03
113 57 0.60
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.48
Consensus pattern (113 bp):
TATGAAATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATGATATA
TATGTGAAGTATTATGTAAGTTATGTAAGTTATGATATGATACATATT
Found at i:80860814 original size:37 final size:37
Alignment explanation
Indices: 80860770--80860860 Score: 104
Period size: 36 Copynumber: 2.5 Consensus size: 37
80860760 AAATTATATT
*
80860770 AATTGATAAATATTGAAATAT-TG-AAAT-ATATTTAA
1 AATTGATAAATATTGAAATATAAGCAAATCAT-TTTAA
80860805 AATGTTGAT-AA-A-TGAAATATAAGCAAATCATTTTAA
1 AA--TTGATAAATATTGAAATATAAGCAAATCATTTTAA
80860841 AATTGATAAATATTGAAATA
1 AATTGATAAATATTGAAATA
80860861 CATTAAAGCA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
34 13 0.28
35 6 0.13
36 14 0.30
37 14 0.30
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (37 bp):
AATTGATAAATATTGAAATATAAGCAAATCATTTTAA
Found at i:80862847 original size:59 final size:59
Alignment explanation
Indices: 80862749--80862878 Score: 181
Period size: 59 Copynumber: 2.2 Consensus size: 59
80862739 TTTCAAATTG
* * ** *
80862749 GGGAGAAAGGGGTAATTATTTTAGGGTTTCAAATTAGGGAAAATGGAGGG-AATAAACTA
1 GGGAGAAGGGGGTAATTATTTTAGGGATTCAAAGAAGGGAAAATGG-GGGAAATAAACCA
* *
80862808 GGGAGAAGGGGGTGATTATTTTAGGGATTCGAAGAAGGGAAAATGGGGGAAATAAACCA
1 GGGAGAAGGGGGTAATTATTTTAGGGATTCAAAGAAGGGAAAATGGGGGAAATAAACCA
80862867 GGGAGAAGGGGG
1 GGGAGAAGGGGG
80862879 AACTCGGTGT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
58 3 0.05
59 60 0.95
ACGTcount: A:0.37, C:0.04, G:0.39, T:0.20
Consensus pattern (59 bp):
GGGAGAAGGGGGTAATTATTTTAGGGATTCAAAGAAGGGAAAATGGGGGAAATAAACCA
Found at i:80863068 original size:114 final size:115
Alignment explanation
Indices: 80862949--80863485 Score: 448
Period size: 114 Copynumber: 4.7 Consensus size: 115
80862939 ACATTTGCGA
* * *
80862949 CGTTT-TCACCTAGCACCGCTAAAGGCAAACCAATTGCGGCGTTTTAACAT-AAACGCCACTAAA
1 CGTTTATCACCTAGCGCCGCTAAAGGCAAACCTATTGTGGCGTTTTAACATAAAACGCCACTAAA
* *
80863012 AAAACAAACAAAACAACACCGTTTGGATATAAACAGAATAAACTTTAGTGG
66 AAACCAAA-AAAACAACACCGTTTTGATATAAACAGAATAAACTTTAGTGG
* * * * * * *
80863063 CGTTTTTC-CGTAGCGCCGCTAAAGGCAAATCAATTGTGGCGTTTCACCCTAAAACGCCACTAAA
1 CGTTTATCACCTAGCGCCGCTAAAGGCAAACCTATTGTGGCGTTTTAACATAAAACGCCACTAAA
* ** * * *
80863127 AATCCAAAAAGAACGATGA-TGTTTTCATATGAACAGAAT-AACATTTAGTGG
66 AAACCAAAAA-AAC-AACACCGTTTTGATATAAACAGAATAAAC-TTTAGTGG
* ** * * *
80863178 CGTTTTATCACCAAGCGCCGCTAAAGGCGAAA-CTATTCCGGCGTTTTACCTTAAAACACCACTA
1 CG-TTTATCACCTAGCGCCGCTAAAGGC-AAACCTATTGTGGCGTTTTAACATAAAACGCCACTA
* * * * * * * *
80863242 ATAATCGAATAAAACTACATCGTTTTGATATAAACA-AATTAACCATTAGTGG
64 AAAAACCAAAAAAACAACACCGTTTTGATATAAACAGAA-TAAACTTTAGTGG
* * *
80863294 CGTTTAT-ACCTTAGCGCCACTAAA-TCAAACCTATTGTGGCGTTTGAACCA-AAAACGCCACTA
1 CGTTTATCACC-TAGCGCCGCTAAAGGCAAACCTATTGTGGCGTTTTAA-CATAAAACGCCACTA
* * * * * * *
80863356 AAAATCCATAAAAACTACACCGTTTTGATCTAAACAAAATAACCCTTAGTGG
64 AAAAACCAAAAAAACAACACCGTTTTGATATAAACAGAATAAACTTTAGTGG
* * * * * * * *
80863408 CTTTTATAACCTTGCACCGCTAAA-TCAACCCTACTGTGGCGTTTTAACCTAAAACGCCACTAAA
1 CGTTTATCACCTAGCGCCGCTAAAGGCAAACCTATTGTGGCGTTTTAACATAAAACGCCACTAAA
*
80863472 AATCCAAAGAAAAC
66 AAACCAAA-AAAAC
80863486 GGTGTCGTCC
Statistics
Matches: 345, Mismatches: 60, Indels: 35
0.78 0.14 0.08
Matches are distributed among these distances:
113 4 0.01
114 172 0.50
115 80 0.23
116 33 0.10
117 53 0.15
118 3 0.01
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.25
Consensus pattern (115 bp):
CGTTTATCACCTAGCGCCGCTAAAGGCAAACCTATTGTGGCGTTTTAACATAAAACGCCACTAAA
AAACCAAAAAAACAACACCGTTTTGATATAAACAGAATAAACTTTAGTGG
Found at i:80864378 original size:16 final size:17
Alignment explanation
Indices: 80864357--80864389 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
80864347 AAAGTTTAGT
80864357 GTTTAGTG-TTTAGGGG
1 GTTTAGTGTTTTAGGGG
80864373 GTTTAGTGTTTTAGGGG
1 GTTTAGTGTTTTAGGGG
80864390 TTATAGATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.45
Consensus pattern (17 bp):
GTTTAGTGTTTTAGGGG
Found at i:80864390 original size:16 final size:16
Alignment explanation
Indices: 80864357--80864436 Score: 55
Period size: 16 Copynumber: 5.2 Consensus size: 16
80864347 AAAGTTTAGT
80864357 GTTTAGTG-TTTAGGGG
1 GTTTAGTGTTTTA-GGG
80864373 GTTTAGTGTTTTAGGG
1 GTTTAGTGTTTTAGGG
* *
80864389 G-TTA-TAG-ATTA-GT
1 GTTTAGT-GTTTTAGGG
*
80864402 GTTTA-TGTTTTTTGGG
1 GTTTAGTG-TTTTAGGG
*
80864418 GTTTAGGGTTTTAGGG
1 GTTTAGTGTTTTAGGG
80864434 GTT
1 GTT
80864437 AAATGACTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
13 3 0.06
14 8 0.16
15 6 0.12
16 28 0.56
17 5 0.10
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (16 bp):
GTTTAGTGTTTTAGGG
Found at i:80864392 original size:45 final size:45
Alignment explanation
Indices: 80864330--80864439 Score: 141
Period size: 45 Copynumber: 2.4 Consensus size: 45
80864320 TGGGGTTTAA
** *
80864330 TTAGGGTTTTAAAGGTTAAAGTTTAGTGTTTA-GTGTTTAGGGGGT
1 TTAGGGTTTTAGGGGTTAAAGATTAGTGTTTATGT-TTTAGGGGGT
* * **
80864375 TTAGTGTTTTAGGGGTTATAGATTAGTGTTTATGTTTTTTGGGGT
1 TTAGGGTTTTAGGGGTTAAAGATTAGTGTTTATGTTTTAGGGGGT
80864420 TTAGGGTTTTAGGGGTTAAA
1 TTAGGGTTTTAGGGGTTAAA
80864440 TGACTTTTAG
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 53 0.96
46 2 0.04
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (45 bp):
TTAGGGTTTTAGGGGTTAAAGATTAGTGTTTATGTTTTAGGGGGT
Found at i:80864512 original size:41 final size:41
Alignment explanation
Indices: 80864444--80864703 Score: 215
Period size: 41 Copynumber: 6.4 Consensus size: 41
80864434 GTTAAATGAC
*
80864444 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * * *
80864485 TTTTAGTGGCGTTTTA-TACAAAGCGCCGTTAATTCTTTGGT
1 TTTTAGCGGCGTTTTACCA-AAAGCGCCGCTAATGCTCTGGT
* * *
80864526 TTTTAGTGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*** * * * *
80864567 TTTTAGCGGCGTTTTTGGTAAAA-CGCCACTATTGCTATGTT
1 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * * * **
80864608 TTTTGGCGGCGTTTT-CTGTAAAA-CGCCGCTATTTCTATAAT
1 TTTTAGCGGCGTTTTAC--CAAAAGCGCCGCTAATGCTCTGGT
* * *
80864649 TTTTAACGGCGTTTTACCAAAAACGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
80864689 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
80864704 TGGTAAAACG
Statistics
Matches: 179, Mismatches: 33, Indels: 15
0.79 0.15 0.07
Matches are distributed among these distances:
40 24 0.13
41 145 0.81
42 10 0.06
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:80864611 original size:123 final size:122
Alignment explanation
Indices: 80864443--80864733 Score: 330
Period size: 123 Copynumber: 2.4 Consensus size: 122
80864433 GGTTAAATGA
**** * * * *
80864443 CTTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGTTTTTAGTGGCGTTTTATACAAAG
1 CTTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTATGGTTTTTAGCGGCGTTTTATACAAAA
* * ** ** *
80864508 CGCCGTTAATTCTTTGGTTTTTAGTGGCGTTTTACCAAAAGCGCCACTAATGCTCTGG
66 CGCCGCTAATTCTATAATTTTTAACGGCGTTTTACCAAAAACGCCACTAATGCTCT-G
* * * * **
80864566 CTTTTAGCGGCGTTTTTGGTAAAACGCCACTATTGCTATGTTTTTTGGCGGCGTTTTCTGTAAAA
1 CTTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTATGGTTTTTAGCGGCGTTTTATACAAAA
* * *
80864631 CGCCGCTATTTCTATAATTTTTAACGGCGTTTTACCAAAAACGCCGCTATTGCTCTG
66 CGCCGCTAATTCTATAATTTTTAACGGCGTTTTACCAAAAACGCCACTAATGCTCTG
* *
80864688 TTTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTCTGCGTTTT
1 CTTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTATG-GTTTT
80864734 ACAATTTTTG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
122 38 0.27
123 101 0.73
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (122 bp):
CTTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTGCTATGGTTTTTAGCGGCGTTTTATACAAAA
CGCCGCTAATTCTATAATTTTTAACGGCGTTTTACCAAAAACGCCACTAATGCTCTG
Found at i:80877831 original size:15 final size:15
Alignment explanation
Indices: 80877790--80877852 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 15
80877780 GAAAACAAAA
*
80877790 ATAAATAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
80877805 ACAGAGGAATCCAAG
1 ATAAAGAAATCCAAG
*
80877820 ATAAAGATATCCAAG
1 ATAAAGAAATCCAAG
* *
80877835 GTACAGAAATCCAAG
1 ATAAAGAAATCCAAG
80877850 ATA
1 ATA
80877853 CCATATCATA
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:80886146 original size:33 final size:33
Alignment explanation
Indices: 80886109--80886186 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 33
80886099 TGGTCCTGCC
* * *
80886109 ATGGTCTTACACTCATAATGCCATAACCTAGTT
1 ATGGTCTTACACTCAGAATGCCATAACCCAGCT
* * *
80886142 ATGGTCTTATCA-TTAGGATGCCATAGCCCAGCT
1 ATGGTCTTA-CACTCAGAATGCCATAACCCAGCT
80886175 ATGGTCTTACAC
1 ATGGTCTTACAC
80886187 GTATACATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
32 2 0.05
33 33 0.89
34 2 0.05
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (33 bp):
ATGGTCTTACACTCAGAATGCCATAACCCAGCT
Found at i:80886348 original size:101 final size:101
Alignment explanation
Indices: 80886092--80886424 Score: 409
Period size: 101 Copynumber: 3.3 Consensus size: 101
80886082 GTTGTACACA
** ** * * *
80886092 ATTGCCATGGTCCTGCCATGGTCTTACACTCATA-ATGCCATAACCTAGTTATGGTCTTATCATT
1 ATTGCCATGGTCCAACCATGGTCTTACGTTCA-AGGTGCCATAACCAAGTTATGGTCTTTTCATT
** * *
80886156 AGGATGCCATAGCCCAGCTATGGTCTTACACGTATACATA-
65 AAAATACCATAGCCCAGCTATGGTCTTACA--T-T-CAAAC
* *
80886196 TTCTACCATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCAAGTTATGGTCTTTTCATT
1 AT-TGCCATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCAAGTTATGGTCTTTTCATT
*
80886261 AAAATACCATAGCCCAACTATGGTCTTACATTCAAAC
65 AAAATACCATAGCCCAGCTATGGTCTTACATTCAAAC
* * * *
80886298 ATTGCCATGGTCTAACCATGGTCTTACGTTTAAGGTGCCATAACCCAGTTATGGTTTTTTCATTA
1 ATTGCCATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCAAGTTATGGTCTTTTCATTA
* *
80886363 AAATACCATGGCGCAGCTATGGTCTTACATTCAAAC
66 AAATACCATAGCCCAGCTATGGTCTTACATTCAAAC
*
80886399 ATTGCCATGGTCCAACTATGGTCTTA
1 ATTGCCATGGTCCAACCATGGTCTTA
80886425 TCCATCAATT
Statistics
Matches: 201, Mismatches: 25, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
101 118 0.59
102 2 0.01
103 1 0.00
104 2 0.01
105 78 0.39
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (101 bp):
ATTGCCATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCAAGTTATGGTCTTTTCATTA
AAATACCATAGCCCAGCTATGGTCTTACATTCAAAC
Found at i:80895215 original size:40 final size:40
Alignment explanation
Indices: 80895158--80895237 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
80895148 GTAAACTCAG
* *
80895158 TGTGTAACCCAGTAGAATTAGACATGCAAACATACAGATT
1 TGTGTAACCCAGCAGAATTAGACATACAAACATACAGATT
*
80895198 TGTGTAACCCAGCAGAATTAGACATACAAATATACAGATT
1 TGTGTAACCCAGCAGAATTAGACATACAAACATACAGATT
80895238 ATCTAACATC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.25
Consensus pattern (40 bp):
TGTGTAACCCAGCAGAATTAGACATACAAACATACAGATT
Found at i:80899886 original size:75 final size:75
Alignment explanation
Indices: 80899763--80899914 Score: 295
Period size: 75 Copynumber: 2.0 Consensus size: 75
80899753 TAATTAATTT
80899763 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
1 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
80899828 AGGGAACAAG
66 AGGGAACAAG
80899838 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
1 AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
*
80899903 AGGGAGCAAG
66 AGGGAACAAG
80899913 AA
1 AA
80899915 TTGTAACACA
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.51, C:0.16, G:0.11, T:0.22
Consensus pattern (75 bp):
AAACATATCAACATCACAAATGTTCATATACTTGTTCATAATAACAACAACAAAATTAAAAGGAT
AGGGAACAAG
Found at i:80902685 original size:15 final size:14
Alignment explanation
Indices: 80902667--80902696 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
80902657 AATTTAACTT
80902667 ATTCAAATCACATTC
1 ATTCAAATCA-ATTC
80902682 ATTCAAATCAATTC
1 ATTCAAATCAATTC
80902696 A
1 A
80902697 AAAACACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.33
Consensus pattern (14 bp):
ATTCAAATCAATTC
Found at i:80911398 original size:55 final size:55
Alignment explanation
Indices: 80911266--80911409 Score: 153
Period size: 55 Copynumber: 2.6 Consensus size: 55
80911256 GTTCAAGCTC
* *
80911266 CACACCCGTGTTAATTTGACAGGTTCGACCACGGGTGTTAGACACGGGCGTGTCG
1 CACACCCGTGTTATTTTGACAGGTTCGACCACGGGTGTTACACACGGGCGTGTCG
* * * * * * * * * *
80911321 CACGCCCGTGCTATTTTAACAGGTTCGCCCACGGTTTTTCCACATGGGTGTGTGG
1 CACACCCGTGTTATTTTGACAGGTTCGACCACGGGTGTTACACACGGGCGTGTCG
* * *
80911376 CACACCTGTGTTGTTTTGACAGGCTCGACCACGG
1 CACACCCGTGTTATTTTGACAGGTTCGACCACGG
80911410 CCATATCGCA
Statistics
Matches: 70, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
55 70 1.00
ACGTcount: A:0.17, C:0.27, G:0.28, T:0.27
Consensus pattern (55 bp):
CACACCCGTGTTATTTTGACAGGTTCGACCACGGGTGTTACACACGGGCGTGTCG
Found at i:80917208 original size:27 final size:27
Alignment explanation
Indices: 80917178--80917229 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
80917168 TCATACATCT
80917178 CACAGAGGAATAATAGTCATTTTATTA
1 CACAGAGGAATAATAGTCATTTTATTA
* *
80917205 CACAGGGGCATAATAGTCATTTTAT
1 CACAGAGGAATAATAGTCATTTTAT
80917230 CAATTAGGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (27 bp):
CACAGAGGAATAATAGTCATTTTATTA
Found at i:80920929 original size:28 final size:29
Alignment explanation
Indices: 80920897--80921009 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
80920887 TACCTGTATT
* *
80920897 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
80920925 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
80920954 TAGCCCATTAGGCCCAAATCACATTAATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
80920983 TGG-CCATTTAGGCCC-AATCACATTCAT
1 TGGCCCA-TTAGGCCCAAATCACATTCAT
80921010 GTTCATATTC
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
28 29 0.39
29 44 0.59
30 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:80920951 original size:57 final size:57
Alignment explanation
Indices: 80920888--80921003 Score: 155
Period size: 57 Copynumber: 2.0 Consensus size: 57
80920878 AAATTCACAT
* * * *
80920888 ACCTGTATTTGGCCCATTAAGCCC-AATCATATTCATATGGCCCA-TTAGGCCCAAATC
1 ACCTGTATATAGCCCATTAAGCCCAAATCACATTAATATGG-CCATTTAGGCCC-AATC
*
80920945 ACCTGTATATAGCCCATTAGGCCCAAATCACATTAATATGGCCATTTAGGCCCAATC
1 ACCTGTATATAGCCCATTAAGCCCAAATCACATTAATATGGCCATTTAGGCCCAATC
80921002 AC
1 AC
80921004 ATTCATGTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
57 30 0.58
58 22 0.42
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (57 bp):
ACCTGTATATAGCCCATTAAGCCCAAATCACATTAATATGGCCATTTAGGCCCAATC
Found at i:80929973 original size:13 final size:13
Alignment explanation
Indices: 80929955--80929980 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80929945 ATCCTTAGAA
80929955 TAAATCAAAATGT
1 TAAATCAAAATGT
80929968 TAAATCAAAATGT
1 TAAATCAAAATGT
80929981 CGTCAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (13 bp):
TAAATCAAAATGT
Found at i:80933620 original size:44 final size:43
Alignment explanation
Indices: 80933560--80933715 Score: 194
Period size: 41 Copynumber: 3.7 Consensus size: 43
80933550 CATTGATTTG
* * *
80933560 AGATATCGTGTAAGACCATGTCTGGGACATAGGCCTCG-ATTT
1 AGATTTCGTGTAAGACCATGTCTGGGACATAGGCATCGAATCT
* *
80933602 GAGATTTACGTGTCAGACCATGTCTGGGACATAGGCATGGAATCT
1 -AGATTT-CGTGTAAGACCATGTCTGGGACATAGGCATCGAATCT
* *
80933647 -GATTTTGTGTAAGACCATGTCT-GGACATAGGCGTCGAATCT
1 AGATTTCGTGTAAGACCATGTCTGGGACATAGGCATCGAATCT
*
80933688 A-ATTTCGTGTAAGACCGTGTCTGGGACA
1 AGATTTCGTGTAAGACCATGTCTGGGACA
80933716 GAGGTATCAA
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
41 36 0.37
42 20 0.20
43 10 0.10
44 29 0.30
45 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
AGATTTCGTGTAAGACCATGTCTGGGACATAGGCATCGAATCT
Found at i:80940983 original size:43 final size:42
Alignment explanation
Indices: 80940923--80941031 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 42
80940913 ATCTAAGATA
* * * * *
80940923 TCGTGTAAAACCGTGTCTGAGACACAGGCCTC-AATTTGATATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCAAATCTG--ATT
*
80940966 TCGTGTAAGACCATGTCTGGGACATAGGCATCAAATCTGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCAAATCTGATT
* *
80941008 TCATGTAAGACCCTGTCTGGGACA
1 TCGTGTAAGACCATGTCTGGGACA
80941032 GTGTGACAGC
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 25 0.44
43 27 0.47
44 5 0.09
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCAAATCTGATT
Found at i:80941448 original size:17 final size:17
Alignment explanation
Indices: 80941426--80941459 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
80941416 AAGAATGTGT
80941426 GTGATTGTTTCTCCTCC
1 GTGATTGTTTCTCCTCC
80941443 GTGATTGTTTCTCCTCC
1 GTGATTGTTTCTCCTCC
80941460 TCCCCATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.29, G:0.18, T:0.47
Consensus pattern (17 bp):
GTGATTGTTTCTCCTCC
Found at i:80944535 original size:40 final size:40
Alignment explanation
Indices: 80944480--80944725 Score: 241
Period size: 40 Copynumber: 6.2 Consensus size: 40
80944470 GGACTAAGAT
* *
80944480 CCGAAGGCTTTTGTGCGAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAATC
* * * *
80944520 CCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGAT-
1 CCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAA-ATC
* *
80944561 CTGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCT-AACC
1 CCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAATC
* * * *
80944600 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAATC
* * **
80944640 CCAAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAATC
* * * *
80944680 CCAAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATT
1 CCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAATC
80944719 CCGAAGG
1 CCGAAGG
80944726 TATGTGATTC
Statistics
Matches: 171, Mismatches: 28, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 45 0.26
40 92 0.54
41 31 0.18
42 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAATC
Found at i:80944567 original size:41 final size:40
Alignment explanation
Indices: 80944468--80944581 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 40
80944458 CGGATGATAA
*
80944468 CCGGACTAAGATCCGAAGGCTTTTGTGCGAGTTGCTATAT
1 CCGGACTAAGATCCGAAGGCTTTTGTGCAAGTTGCTATAT
*
80944508 CCGGGCTAA-ATCCCGAAGGCTTTTGTGCTAAG-TGACTATAT
1 CCGGACTAAGAT-CCGAAGGCTTTTGTGC-AAGTTG-CTATAT
* * *
80944549 CCGGACTAAGATCTGAAGGCATTTGTGCGAGTT
1 CCGGACTAAGATCCGAAGGCTTTTGTGCAAGTT
80944582 ACTAATTCCG
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
39 2 0.03
40 28 0.44
41 31 0.49
42 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGGACTAAGATCCGAAGGCTTTTGTGCAAGTTGCTATAT
Found at i:80944714 original size:79 final size:78
Alignment explanation
Indices: 80944474--80944715 Score: 240
Period size: 79 Copynumber: 3.0 Consensus size: 78
80944464 ATAACCGGAC
* * * * *
80944474 TAAGATCCGAAGGCTTTTGTGCGAGTTGCTATATCCGGGCTAAATCCCGAAGGCTTTTGTGCTAA
1 TAAGATCCAAAGGCATTTGTGCGAGTTACTATATCCGGGCT-AATCCCGAAGGCATTTGTGC-GA
*
80944539 GT-GACTATATCCGGAC
64 GTAG-CTATATCCGG-T
** * *
80944555 TAAGATCTGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAACCCCGAAGGCATTGGTGCGAG
1 TAAGATCCAAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAATCCCGAAGGCATTTGTGCGAG
*
80944619 TTA-CTAAATCCGGGT
65 -TAGCTATATCC-GGT
* * * *
80944634 TAAG-TCCCAAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCAAAGGCATTTGAGCGA
1 TAAGAT-CCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTA-ATCCCGAAGGCATTTGTGCGA
80944698 GTAGCTATATCCGGT
64 GTAGCTATATCCGGT
80944713 TAA
1 TAA
80944716 ATTCCGAAGG
Statistics
Matches: 135, Mismatches: 18, Indels: 18
0.79 0.11 0.11
Matches are distributed among these distances:
78 1 0.01
79 52 0.39
80 46 0.34
81 36 0.27
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (78 bp):
TAAGATCCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAATCCCGAAGGCATTTGTGCGAGT
AGCTATATCCGGT
Found at i:80947974 original size:40 final size:40
Alignment explanation
Indices: 80947884--80948068 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
80947874 TCGAATGATG
* *
80947884 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
80947923 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
80947964 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
** *
80948003 TCTAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
80948042 AACCAGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
80948069 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:80948023 original size:79 final size:81
Alignment explanation
Indices: 80947884--80948066 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
80947874 TCGAATGATG
* *
80947884 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCTGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCTGGACTAAGATCCGAAGGCATT
80947948 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * *
80947963 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCTAGG-TTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCT-GGACTAAGAT-CCGAAGGC
80948024 ATTTGTGCGAGTTACTATA
63 ATTTGTGCGAGTTACTATA
* * *
80948043 ACCAGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80948067 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCTGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:80948090 original size:79 final size:79
Alignment explanation
Indices: 80947937--80948101 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
80947927 GGACTAAGAT
* * **
80947937 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
80948002 ATCTAGGTTAAGTC
66 ATCTAGGTTAAATC
* *
80948016 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
80948079 TATATC-CGGTTAAATT
63 TAAATCTAGGTTAAATC
80948095 CCGAAGG
1 CCGAAGG
80948102 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCTAGGTTAAATC
Found at i:80961625 original size:45 final size:42
Alignment explanation
Indices: 80961474--80961630 Score: 117
Period size: 45 Copynumber: 3.7 Consensus size: 42
80961464 ATATTGAACA
* * * **
80961474 ATGCCAACGTCCCA-AACGTGTTCTTACATGCTATCTCATATCG
1 ATGCCAACGTCCCAGAA-GTGGTCTTACACG-AATCAAATATCG
*
80961517 ATGCC-ACTGTCCTAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAAC-GTCCCAGA-AGTGGTCTTACACGAATCAAATATCG
* * *
80961558 ATGCCAATGTCTCATACA-TGGTCTTACACGTAATCACATATATCG
1 ATGCCAACGTCCCAGA-AGTGGTCTTACACG-AATCA-A-ATATCG
*
80961603 ATGCCAACGTCCCAGATGTGGTCTTACA
1 ATGCCAACGTCCCAGAAGTGGTCTTACA
80961631 TGAGAACATA
Statistics
Matches: 90, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
41 25 0.28
42 14 0.16
43 20 0.22
44 5 0.06
45 26 0.29
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCAACGTCCCAGAAGTGGTCTTACACGAATCAAATATCG
Found at i:80969848 original size:14 final size:14
Alignment explanation
Indices: 80969829--80969866 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
80969819 ATTCGGCTAA
80969829 CACATATATAATTT
1 CACATATATAATTT
* *
80969843 CACATATTTCATTT
1 CACATATATAATTT
80969857 CA-ATATATAA
1 CACATATATAA
80969867 AATTCATATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (14 bp):
CACATATATAATTT
Found at i:80970847 original size:14 final size:14
Alignment explanation
Indices: 80970830--80970856 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80970820 AAAACACGAA
80970830 AATTTCACAAATAT
1 AATTTCACAAATAT
80970844 AATTTCACAAATA
1 AATTTCACAAATA
80970857 ATAAACACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (14 bp):
AATTTCACAAATAT
Found at i:80990364 original size:43 final size:43
Alignment explanation
Indices: 80990315--80990447 Score: 239
Period size: 43 Copynumber: 3.1 Consensus size: 43
80990305 CCGGCATTAC
80990315 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
80990358 GCCTGCTAGGCATGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
80990401 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCACAAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
80990444 GCCT
1 GCCT
80990448 ATAACATCCC
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.31, C:0.35, G:0.24, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:80991815 original size:46 final size:46
Alignment explanation
Indices: 80991748--80991917 Score: 151
Period size: 46 Copynumber: 3.8 Consensus size: 46
80991738 TGTAACCCGC
* *
80991748 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGATCGCAT
*
80991794 CCATAAGTGAACTCAGACTCAACTCAACGAGCT--TG-GAT-G---
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGATCGCAT
* * * *
80991833 CC-T-AGTTACATCTCACGAACTCAGACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGA-A-CTCA-G-ACTCA-ACTCAACGAGCTCGGGCGATCGCAT
* *
80991882 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
80991918 ATGCCCAAAT
Statistics
Matches: 100, Mismatches: 10, Indels: 28
0.72 0.07 0.20
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 6 0.06
40 1 0.01
41 5 0.05
42 12 0.12
43 2 0.02
44 1 0.01
45 2 0.02
46 48 0.48
47 5 0.05
48 1 0.01
49 5 0.05
50 2 0.02
51 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGATCGCAT
Found at i:80999914 original size:61 final size:61
Alignment explanation
Indices: 80999815--80999936 Score: 217
Period size: 61 Copynumber: 2.0 Consensus size: 61
80999805 CACTATAAAA
* *
80999815 CATAGAAAATTAAATGATGTAAGCTATAAAGCTTAGTAAACTCGTATGAAATAAACTTACT
1 CATAGAAAATTAAATGATGTAAGCTACAAAGCTCAGTAAACTCGTATGAAATAAACTTACT
*
80999876 CATAGAAAATTAAATGATGTAAGCTACAAAGCTCAGTAAGCTCGTATGAAATAAACTTACT
1 CATAGAAAATTAAATGATGTAAGCTACAAAGCTCAGTAAACTCGTATGAAATAAACTTACT
80999937 GCAATCACAT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.28
Consensus pattern (61 bp):
CATAGAAAATTAAATGATGTAAGCTACAAAGCTCAGTAAACTCGTATGAAATAAACTTACT
Found at i:81005316 original size:31 final size:31
Alignment explanation
Indices: 81005278--81005418 Score: 248
Period size: 31 Copynumber: 4.5 Consensus size: 31
81005268 TTTAACGGGT
81005278 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
81005309 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
81005340 ACTGGGCCGAAGCCTTATT-ATAAATCATATC
1 ACTGGGCCGAAGCCTT-TTCATAAATCATATC
*
81005371 ACTGGGCCGAAGTCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
81005402 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
81005419 ACTGTAAACA
Statistics
Matches: 104, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
30 2 0.02
31 101 0.97
32 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:81005692 original size:25 final size:24
Alignment explanation
Indices: 81005623--81005704 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
81005613 CTAGAGGCCT
* *
81005623 AGCCTCTTTTAAT-AACTGGGGAAA
1 AGCC-CTTTTGATAAACTGGGGCAA
81005647 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
* *
81005671 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
81005696 AGCCCTTTT
1 AGCCCTTTT
81005705 AGCACTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 7 0.13
24 23 0.44
25 22 0.42
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:81006547 original size:27 final size:25
Alignment explanation
Indices: 81006512--81006605 Score: 80
Period size: 27 Copynumber: 3.5 Consensus size: 25
81006502 GGGCATATTC
*
81006512 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACC-TACAGGGGT-TTACG
* * *
81006539 GTCACTTTATCCTATAGTGGCTTTACA
1 GTCACTTTA-CCTACAG-GGGTTTACG
81006566 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGG-TTTACG
**
81006593 GTCTTTTTACCTA
1 GTCACTTTACCTA
81006606 ATAGGGGTAT
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
26 6 0.11
27 43 0.80
28 5 0.09
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.37
Consensus pattern (25 bp):
GTCACTTTACCTACAGGGGTTTACG
Found at i:81006687 original size:27 final size:27
Alignment explanation
Indices: 81006634--81006966 Score: 224
Period size: 27 Copynumber: 12.3 Consensus size: 27
81006624 TTTCACCATA
* * * *
81006634 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
81006661 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** * *
81006688 CAATGGTATTTTTATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTATAAA-C
* *
81006717 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * *
81006744 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * *
81006771 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
81006798 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * * *
81006825 TAGGGGTATTTTGGTAATTTTACAAGC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * * *
81006852 TAGGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
81006879 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* * *
81006905 CGAGGGTATTTTGTTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
81006932 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
81006959 CGAGGGTA
1 CAAGGGTA
81006967 AAACAGTAAT
Statistics
Matches: 247, Mismatches: 50, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
26 24 0.10
27 194 0.79
28 15 0.06
29 13 0.05
30 1 0.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:81006961 original size:54 final size:54
Alignment explanation
Indices: 81006636--81006966 Score: 253
Period size: 54 Copynumber: 6.1 Consensus size: 54
81006626 TCACCATACA
* * * * * *
81006636 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
* ** * *
81006690 ATGGTATTTTTATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAATC-
1 AGGGTATTTTGGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATTTTGTAAATCG
*** * *** *
81006745 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CC
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
* * * *
81006799 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAA-TTT-TACAAGCT
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTA-AATCG
* * * * *
81006853 AGGGGTATTTTAGCAATTTTACAGACC-AGGGTATTTTGGTAATTTTACT-GATCG
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT-GTAAATCG
* ** *
81006907 AGGGTATTTTGTTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
81006961 AGGGTA
1 AGGGTA
81006967 AAACAGTAAT
Statistics
Matches: 219, Mismatches: 43, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
52 1 0.00
53 40 0.18
54 124 0.57
55 16 0.07
56 37 0.17
57 1 0.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
Found at i:81006974 original size:27 final size:27
Alignment explanation
Indices: 81006944--81007074 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
81006934 AGGGTATTTT
*
81006944 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
81006971 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
81006998 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
81007025 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
81007052 GGTAATTATGTAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
81007075 CTTTGGTAAT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:81006977 original size:54 final size:54
Alignment explanation
Indices: 81006919--81007074 Score: 195
Period size: 54 Copynumber: 2.9 Consensus size: 54
81006909 GGTATTTTGT
* * *** *
81006919 TAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAG
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTAAAACAG
* * * *
81006973 TAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTAAAACAG
* **
81007027 TAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTA
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTA
81007075 CTTTGGTAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (54 bp):
TAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTAAAACAG
Found at i:81007084 original size:81 final size:81
Alignment explanation
Indices: 81006945--81007101 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
81006935 GGGTATTTTA
* * *
81006945 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTACA
81007010 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * *** * *
81007026 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTACTTTGGTAATTTTACA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTACA
*
81007091 AGTCGAGGGTA
66 AATCGAGGGTA
81007102 TTTCAATAAT
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTACA
AATCGAGGGTAAAACG
Found at i:81007112 original size:81 final size:81
Alignment explanation
Indices: 81006934--81007112 Score: 196
Period size: 81 Copynumber: 2.2 Consensus size: 81
81006924 TTGTAAACCA
* * *
81006934 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
1 AGGGTATTTCAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAATA
*
81006999 GTAATTCTATAAATCG
66 GTAATTCTACAAATCG
*** * * * * *** *
81007015 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTACTTTG
1 AGGGTATTTCAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAATA
* *
81007080 GTAATTTTACAAGTCG
66 GTAATTCTACAAATCG
*
81007096 AGGGTATTTCAATAATT
1 AGGGTATTTCAGTAATT
81007113 GGTAAACTAA
Statistics
Matches: 76, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAATA
GTAATTCTACAAATCG
Found at i:81011446 original size:80 final size:80
Alignment explanation
Indices: 81011306--81011483 Score: 320
Period size: 80 Copynumber: 2.2 Consensus size: 80
81011296 TAGCCGGATA
* *
81011306 TAGCACAAATGCCTTCAGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAG
1 TAGCACAAATGCCTTCGGGACTTAGCCCAGATATAATCACTAGCACAAATGCCTTCGGGACTTAG
81011371 CCCGGATATAGTAAC
66 CCCGGATATAGTAAC
* *
81011386 TCGCACAAATGCCTTCGGGACTTAGCCCAGATATAATCACTAGCACAAATGCCTTTGGGACTTAG
1 TAGCACAAATGCCTTCGGGACTTAGCCCAGATATAATCACTAGCACAAATGCCTTCGGGACTTAG
81011451 CCCGGATATAGTAAC
66 CCCGGATATAGTAAC
81011466 TAGCACAAATGCCTTCGG
1 TAGCACAAATGCCTTCGG
81011484 ATCTTAGTCC
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 93 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (80 bp):
TAGCACAAATGCCTTCGGGACTTAGCCCAGATATAATCACTAGCACAAATGCCTTCGGGACTTAG
CCCGGATATAGTAAC
Found at i:81011490 original size:40 final size:40
Alignment explanation
Indices: 81011306--81011483 Score: 284
Period size: 40 Copynumber: 4.5 Consensus size: 40
81011296 TAGCCGGATA
* *
81011306 TAGCACAAATGCCTTCAGGACTTAGCCCGGATATAATCAC
1 TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAAC
*
81011346 TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAAC
1 TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAAC
* * *
81011386 TCGCACAAATGCCTTCGGGACTTAGCCCAGATATAATCAC
1 TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAAC
* *
81011426 TAGCACAAATGCCTTTGGGACTTAGCCCGGATATAGTAAC
1 TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAAC
81011466 TAGCACAAATGCCTTCGG
1 TAGCACAAATGCCTTCGG
81011484 ATCTTAGTCC
Statistics
Matches: 125, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 125 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (40 bp):
TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAAC
Found at i:81013018 original size:13 final size:13
Alignment explanation
Indices: 81013002--81013027 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81012992 TTTTTTATTT
81013002 TTAACATAAAATA
1 TTAACATAAAATA
81013015 TTAACATAAAATA
1 TTAACATAAAATA
81013028 ATTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:81019754 original size:40 final size:40
Alignment explanation
Indices: 81019542--81019747 Score: 288
Period size: 40 Copynumber: 5.2 Consensus size: 40
81019532 AACCCAAGTA
* * * *
81019542 CCTTCGGAATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * * * *
81019581 CCTTCGGGACTTAGCCCGGATATAATCAGTAGCACTAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
81019621 CCTTCGTGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
81019661 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
81019701 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
81019741 CCTTCGG
1 CCTTCGG
81019748 ATCTTAGTCC
Statistics
Matches: 144, Mismatches: 22, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 12 0.08
40 132 0.92
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:81019754 original size:80 final size:80
Alignment explanation
Indices: 81019540--81019747 Score: 337
Period size: 80 Copynumber: 2.6 Consensus size: 80
81019530 CAAACCCAAG
* * *
81019540 TACCTTCGGAATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 TACCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
* *
81019604 AATCAGTAGCACTAA
66 AATCACTAGCACAAA
*
81019619 TACCTTCGTGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 TACCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
81019684 AATCACTAGCACAAA
66 AATCACTAGCACAAA
* *
81019699 TGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGG
1 TACCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
81019748 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 13 0.11
80 106 0.89
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (80 bp):
TACCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
AATCACTAGCACAAA
Found at i:81021258 original size:13 final size:13
Alignment explanation
Indices: 81021242--81021267 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81021232 TTTTTTATTT
81021242 TTAACATAAAATA
1 TTAACATAAAATA
81021255 TTAACATAAAATA
1 TTAACATAAAATA
81021268 ATTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:81024117 original size:13 final size:13
Alignment explanation
Indices: 81024084--81024117 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81024074 TAGGAACGCA
81024084 CCCGTGTGACACG
1 CCCGTGTGACACG
*
81024097 CCCATGTGACACG
1 CCCGTGTGACACG
*
81024110 CCTGTGTG
1 CCCGTGTG
81024118 TGGAAGTCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.15, C:0.35, G:0.29, T:0.21
Consensus pattern (13 bp):
CCCGTGTGACACG
Found at i:81029586 original size:40 final size:40
Alignment explanation
Indices: 81029485--81029703 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
81029475 CGGATGATAA
* * *
81029485 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGCT-ACTAATT
81029525 -CGGGCTAAGT-CCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
81029563 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
* * *
81029603 CC-GGCTAAGTCCCGAAGGCATTTGT--GAGTTA-TTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
* * *
81029639 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT-T
81029679 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81029704 AGCTAGTGGC
Statistics
Matches: 163, Mismatches: 7, Indels: 18
0.87 0.04 0.10
Matches are distributed among these distances:
36 5 0.03
37 28 0.17
38 20 0.12
39 53 0.33
40 57 0.35
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
Found at i:81029717 original size:40 final size:39
Alignment explanation
Indices: 81029481--81029726 Score: 221
Period size: 40 Copynumber: 6.3 Consensus size: 39
81029471 TGTTCGGATG
* *
81029481 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGC-AGTAGCT
**
81029521 A-ATTCGGGCTAAGT-CCGAAGGCATTTGTGC-G-AGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGCT
81029556 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC-G-AGCT
1 A-TAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGCT
*
81029596 ACTAATTCC-GGCTAAGTCCCGAAGGCATTTGTG-AGTTA-TT
1 A-TAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCAG-TAGCT
81029636 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AG-TAGCT
* *
81029675 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTAGCT
*
81029715 ATATCC-GGCTAA
1 ATAACCGGGCTAA
81029727 ACTCCGAAGG
Statistics
Matches: 180, Mismatches: 12, Indels: 29
0.81 0.05 0.13
Matches are distributed among these distances:
35 4 0.02
36 3 0.02
37 25 0.14
38 13 0.07
39 64 0.36
40 70 0.39
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGCT
Found at i:81037636 original size:40 final size:39
Alignment explanation
Indices: 81037581--81037804 Score: 301
Period size: 40 Copynumber: 5.6 Consensus size: 39
81037571 CGGATGATAA
* * *
81037581 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTAATT
81037621 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
81037661 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
* *
81037701 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
* *
81037740 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT-T
81037780 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81037805 AGCTAGTGGC
Statistics
Matches: 173, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
39 38 0.22
40 132 0.76
41 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATT
Found at i:81037818 original size:40 final size:39
Alignment explanation
Indices: 81037577--81037827 Score: 243
Period size: 40 Copynumber: 6.3 Consensus size: 39
81037567 TGTTCGGATG
* *
81037577 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGC-AGTAGCT
*
81037617 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGC-G-AGCT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGCT
81037654 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC-G-AGCT
1 A-TAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGCT
*
81037694 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC-G-AGTT
1 A-TAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGCT
81037734 ATTATACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CT
1 A-TA-ACCGGGCTAAGTCCCGAAGGCATTTGTGC-AG-TAGCT
* *
81037776 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTAGCT
*
81037816 ATATCC-GGCTAA
1 ATAACCGGGCTAA
81037828 ACTCCGAAGG
Statistics
Matches: 188, Mismatches: 11, Indels: 25
0.84 0.05 0.11
Matches are distributed among these distances:
37 4 0.02
38 1 0.01
39 37 0.20
40 137 0.73
41 6 0.03
42 2 0.01
43 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGCT
Found at i:81037823 original size:119 final size:120
Alignment explanation
Indices: 81037581--81037807 Score: 325
Period size: 119 Copynumber: 1.9 Consensus size: 120
81037571 CGGATGATAA
* * *
81037581 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTTG
* * *
81037646 TGCGAGCTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
66 TGCAAGCTACTAATACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCTACTAATT
* * *
81037701 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTT
*
81037764 GTGCAAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTTGAGC
65 GTGCAAGCTACTAAT-ACCGGGCTAAGTCCCGAAGGCATTTGAGC
81037808 TAGTGGCTAT
Statistics
Matches: 95, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
118 2 0.02
119 65 0.68
120 28 0.29
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACTAATACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGCTACTAATT
Found at i:81037837 original size:79 final size:79
Alignment explanation
Indices: 81037581--81037827 Score: 290
Period size: 79 Copynumber: 3.1 Consensus size: 79
81037571 CGGATGATAA
* * * *
81037581 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTAATTCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGCT-ACTAATACCGGGCTAAGTCCCGAAGGCATT
81037644 TGTGCGAGCTACTA-ATT
64 TGTGCGAG-TACTATA-T
* *
81037661 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAATACCGGGCTAAGTCCCGAAGGCATTTG
*
81037726 TGCGAGTTATTATA-
66 TGCGAG-TACTATAT
*
81037740 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAAT-ACCGGGCTAAGTCCCGAAGGCATTT
* * *
81037804 GAGCTAGTGGCTATAT
65 GTGCGAGT-ACTATAT
81037820 CC-GGCTAA
1 CCGGGCTAA
81037828 ACTCCGAAGG
Statistics
Matches: 149, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
78 3 0.02
79 73 0.49
80 69 0.46
81 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAATACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTACTATAT
Found at i:81041485 original size:41 final size:41
Alignment explanation
Indices: 81041439--81041521 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
81041429 TAAAACAAGA
81041439 ATTAAGAACACATAATTAAGAACAAGTCAAATATTTATCAT
1 ATTAAGAACACATAATTAAGAACAAGTCAAATATTTATCAT
81041480 ATTAAGAACACATAATTAAGAACAAGTCAAATATTTATCAT
1 ATTAAGAACACATAATTAAGAACAAGTCAAATATTTATCAT
81041521 A
1 A
81041522 CAATTCAGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.52, C:0.12, G:0.07, T:0.29
Consensus pattern (41 bp):
ATTAAGAACACATAATTAAGAACAAGTCAAATATTTATCAT
Found at i:81043912 original size:22 final size:22
Alignment explanation
Indices: 81043884--81043926 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
81043874 CCATAGACAG
81043884 GACAACACATAGCCGTAAACAA
1 GACAACACATAGCCGTAAACAA
*
81043906 GACAACACATAGTCGTAAACA
1 GACAACACATAGCCGTAAACA
81043927 TCGAAGCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.26, G:0.14, T:0.12
Consensus pattern (22 bp):
GACAACACATAGCCGTAAACAA
Found at i:81044396 original size:41 final size:41
Alignment explanation
Indices: 81044336--81044456 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
81044326 AAAAGCCACT
* *
81044336 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATC
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATC
*
81044377 GGTGGATCCACGATAGTCAAGCAACCATGCGATCCTCAATC
1 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATC
*
81044418 GGTGGATCCAC-AGTCGTCAAGTAACCATGC-ATCCTCAAT
1 GGTGGATCCACGA-TCGTCAAGCAACCATGCGATCCTCAAT
81044457 TTCTTCCTCC
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
40 10 0.14
41 64 0.86
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (41 bp):
GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATC
Found at i:81044872 original size:26 final size:27
Alignment explanation
Indices: 81044712--81045061 Score: 257
Period size: 27 Copynumber: 13.0 Consensus size: 27
81044702 TCGGAAAATC
*
81044712 TACAAACCAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* * * *
81044739 TGCAAACCAATGGTATTTCT-ATAATTT
1 TACAAATCAAGGGTATTT-TGGTAATTT
** * *
81044766 TTGAAAGT-AAAGGTATTTCT-ATAATTT
1 TACAAA-TCAAGGGTATTT-TGGTAATTT
** * *
81044793 TGGAAATCAAGGGTATTCCT-GTAATTA
1 TACAAATCAAGGGTATT-TTGGTAATTT
* *
81044820 TCCAAATCAATGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* *
81044847 T-CTAAATCAGGGGTA-TTTGGCAATTT
1 TAC-AAATCAAGGGTATTTTGGTAATTT
*
81044873 TACAAATTAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* * * *
81044900 TACAAGTCGAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
** * * * *
81044927 TACAGGTCGACGATATTTCGGTAA-TT
1 TACAAATCAAGGGTATTTTGGTAATTT
*
81044953 TACAAATCAAGTGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* * *
81044980 TTCAAACCAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
*
81045007 TACAAA-CCAGTGGTATTTTGGTAATTT
1 TACAAATCAAG-GGTATTTTGGTAATTT
* * * *
81045034 TGCTAATCGAGGGTATTTTGGAAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
81045061 T
1 T
81045062 GTAAACCAAT
Statistics
Matches: 262, Mismatches: 50, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
26 45 0.17
27 213 0.81
28 4 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTTGGTAATTT
Found at i:81044915 original size:80 final size:80
Alignment explanation
Indices: 81044712--81045061 Score: 237
Period size: 80 Copynumber: 4.3 Consensus size: 80
81044702 TCGGAAAATC
* * ** * **
81044712 TACAAACCAAGGGTATTTTGGTAATTTTGCAAACCAATGGTATTTCT-ATAATTTTTGAAAGT-A
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT-TGGTAATTTTACAAA-TCA
** **
81044775 AAGGTATTTCTATAATTT
64 GCGGTATTT-GGTAATTT
** * * * * **
81044793 TGGAAATCAAGGGTATTCCT-GTAATTATCCAAATCAATGGTATTTTGGTAATTTT-CTAAATCA
1 TACAAATCAAGGGTATT-TTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC-AAATCA
* *
81044856 GGGGTATTTGGCAATTT
64 GCGGTATTTGGTAATTT
* ** * * **
81044873 TACAAATTAAGGGTATTTTGGTAATTTTACAAGTC-GAGGGTATTTCGATAATTTTACAGGTC-G
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAATCAG
*
81044936 ACGATATTTCGGTAA-TT
65 -CGGTATTT-GGTAATTT
* * * *
81044953 TACAAATCAAGTGTATTTTGGTAATTTTTCAAACCAGGGGTATTTTGGTAATTTTACAAACCAGT
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCAGC
81045018 GGTATTTTGGTAATTT
66 GGTA-TTTGGTAATTT
* * * *
81045034 TGCTAATCGAGGGTATTTTGGAAATTTT
1 TACAAATCAAGGGTATTTTGGTAATTTT
81045062 GTAAACCAAT
Statistics
Matches: 209, Mismatches: 47, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
79 2 0.01
80 117 0.56
81 89 0.43
82 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (80 bp):
TACAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCAGC
GGTATTTGGTAATTT
Found at i:81045051 original size:107 final size:107
Alignment explanation
Indices: 81044831--81045078 Score: 250
Period size: 107 Copynumber: 2.3 Consensus size: 107
81044821 CCAAATCAAT
* * **
81044831 GGTATTTTGGTAATTTTCTAAATCAGGGGTATTTGGCAATTTTACAAATTAAGGGTATTTTGGTA
1 GGTATTTTGGTAATTTACTAAATCAAGGGTATTTGGCAATTTTACAAACCAAGGGTATTTTGGTA
* * *
81044896 ATTTTACAAGTCGAGGGTATTTCGATAATTTTACAGGTCGAC
66 ATTTTACAAGACCAGGGTATTTCGATAATTTTACAGATCGAC
* * * * * *
81044938 GATATTTCGGTAATTTAC-AAATCAAGTGTATTTTGGTAATTTTTCAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTACTAAATCAAGGGTA-TTTGGCAATTTTACAAACCAAGGGTATTTTGGT
* * * *
81045002 AATTTTACAA-ACCAGTGGTATTTTGGTAATTTTGCTA-ATCGAG
65 AATTTTACAAGACCAG-GGTATTTCGATAATTTTAC-AGATCGAC
* ** * *
81045045 GGTATTTTGGAAATTTTGTAAACCAATGGTATTT
1 GGTATTTTGGTAATTTACTAAATCAAGGGTATTT
81045079 CAGTAATTCT
Statistics
Matches: 112, Mismatches: 25, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
106 13 0.12
107 89 0.79
108 10 0.09
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (107 bp):
GGTATTTTGGTAATTTACTAAATCAAGGGTATTTGGCAATTTTACAAACCAAGGGTATTTTGGTA
ATTTTACAAGACCAGGGTATTTCGATAATTTTACAGATCGAC
Found at i:81045105 original size:27 final size:27
Alignment explanation
Indices: 81045075--81045150 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 27
81045065 AACCAATGGT
81045075 ATTTCAGTAATTCTACCCTATAGGGGC
1 ATTTCAGTAATTCTACCCTATAGGGGC
* * *
81045102 ATTTCAGTAGTTCTACCCTACA-GGGT
1 ATTTCAGTAATTCTACCCTATAGGGGC
* * *
81045128 ATTTCAATAATACTAGCCTATAG
1 ATTTCAGTAATTCTACCCTATAG
81045151 ATATGGGATT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 20 0.50
27 20 0.50
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTATAGGGGC
Found at i:81045147 original size:26 final size:27
Alignment explanation
Indices: 81045072--81045147 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
81045062 GTAAACCAAT
*
81045072 GGTATTTCAGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
* *
81045099 GGCATTTCAGTAGTTCTACCCTACA-G
1 GGTATTTCAGTAATTCTACCCTACAGG
* * *
81045125 GGTATTTCAATAATACTAGCCTA
1 GGTATTTCAGTAATTCTACCCTA
81045148 TAGATATGGG
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTACAGG
Found at i:81051139 original size:46 final size:46
Alignment explanation
Indices: 81051072--81051423 Score: 197
Period size: 46 Copynumber: 7.6 Consensus size: 46
81051062 TGTAACCCGC
* *
81051072 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
* * *
81051118 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC--A-GAC--GTTCGCAT
* * *
81051168 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCAGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
* * * *
81051211 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGA---C--GTTCGCAT
* ** * * * *
81051261 -C-TCA-CGAACTTAGACTCAGCTAAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
* * * * *
81051304 CCATTAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC--A-GAC--GTTCGCAT
* * * * * *
81051354 -C-TCA-CGGACTCGGACTCAATTCAACGAGTTCAGACATCCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
* *
81051397 CCATAAGTGAACTCAGACTCAACTCAA
1 CCATAAGCGAACTCGGACTCAACTCAA
81051424 TGAGTTCGGA
Statistics
Matches: 231, Mismatches: 48, Indels: 54
0.69 0.14 0.16
Matches are distributed among these distances:
42 7 0.03
43 9 0.04
44 8 0.03
45 8 0.03
46 95 0.41
47 71 0.31
48 7 0.03
49 8 0.03
50 9 0.04
51 9 0.04
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
Found at i:81051190 original size:47 final size:47
Alignment explanation
Indices: 81051126--81051384 Score: 210
Period size: 47 Copynumber: 5.6 Consensus size: 47
81051116 ATCCATAAGT
*
81051126 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
81051173 GAACTCGGACTCAACTCAATGAGTTC--A-GAC--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
* *
81051219 GAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
** * * * * * * * *
81051266 GAACTTAGACTCAGCTAAACGAGTTCGGACG-TTCGCATCCAT-T-AGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA-C
* *
81051312 GAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
81051359 GGACTCGGACTCAATTCAACGAGTTC
1 GAACTCGGACTCAACTCAACGAGTTC
81051385 AGACATCCGC
Statistics
Matches: 160, Mismatches: 38, Indels: 28
0.71 0.17 0.12
Matches are distributed among these distances:
42 3 0.02
43 3 0.02
44 3 0.02
45 4 0.03
46 55 0.34
47 79 0.49
48 4 0.03
49 3 0.02
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81051192 original size:93 final size:93
Alignment explanation
Indices: 81051079--81051437 Score: 531
Period size: 93 Copynumber: 3.9 Consensus size: 93
81051069 CGCCCATAAG
* * * *
81051079 CGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
81051144 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
81051172 CGAACTCGGACTCAACTCAATGAGTTCAGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
81051237 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
** * * * *
81051265 CGAACTTAGACTCAGCTAAACGAGTTCGGACGTTCGCATCCATTAGTGAACTC-GAACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCAG-ACTCAACTC
81051329 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* * * *
81051358 CGGACTCGGACTCAATTCAACGAGTTCAGACATCCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
81051423 ATGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
81051438 CAAATATCCG
Statistics
Matches: 238, Mismatches: 26, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
92 1 0.00
93 236 0.99
94 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:81067031 original size:49 final size:49
Alignment explanation
Indices: 81066865--81067089 Score: 315
Period size: 49 Copynumber: 4.5 Consensus size: 49
81066855 TGAGGTCGCA
* * * * *
81066865 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
81066916 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
81066966 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
81067015 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
81067064 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
81067090 TGCGTACCAG
Statistics
Matches: 158, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
49 80 0.51
50 45 0.28
51 33 0.21
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:81067045 original size:99 final size:100
Alignment explanation
Indices: 81066858--81067097 Score: 331
Period size: 99 Copynumber: 2.4 Consensus size: 100
81066848 TCTATTGTGA
* *
81066858 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
* **
81066923 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
81066958 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTA
*
81067021 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
81067057 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
81067098 AGATAGCTTT
Statistics
Matches: 123, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
98 36 0.29
99 45 0.37
100 1 0.01
101 41 0.33
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:81070110 original size:15 final size:14
Alignment explanation
Indices: 81070090--81070143 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
81070080 GTATCTTAGG
81070090 TTTCTTTACTCTGGA
1 TTTCTTTA-TCTGGA
*
81070105 TTTCTTTATTCTGGG
1 TTTCTTTA-TCTGGA
*
81070120 TTTCTCTATCTTGGA
1 TTTCTTTATC-TGGA
*
81070135 TTTATTTAT
1 TTTCTTTAT
81070144 TCGGTTTTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 2 0.06
15 30 0.94
ACGTcount: A:0.13, C:0.15, G:0.13, T:0.59
Consensus pattern (14 bp):
TTTCTTTATCTGGA
Found at i:81070124 original size:30 final size:29
Alignment explanation
Indices: 81070088--81070154 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
81070078 TCGTATCTTA
*
81070088 GGTTTCTTTA-CTCTGGATTTCTTTATTCTG
1 GGTTTCTTTATCT-TGGATTTATTTATTC-G
*
81070118 GGTTTCTCTATCTTGGATTTATTTATTCG
1 GGTTTCTTTATCTTGGATTTATTTATTCG
*
81070147 GTTTTCTT
1 GGTTTCTT
81070155 GTTATCTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 7 0.22
30 23 0.72
31 2 0.06
ACGTcount: A:0.10, C:0.15, G:0.16, T:0.58
Consensus pattern (29 bp):
GGTTTCTTTATCTTGGATTTATTTATTCG
Found at i:81072339 original size:51 final size:49
Alignment explanation
Indices: 81072282--81072417 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 49
81072272 TGTGAGGTCG
*
81072282 CATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGAAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAA-T-TGATCA
* * * * * * *
81072333 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGATCA
* *
81072382 CATGTGTAGTACTATGTGCAGACTACTATGCGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
81072418 AGATAACTTT
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 35 0.49
50 1 0.01
51 36 0.50
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGATCA
Found at i:81072392 original size:49 final size:51
Alignment explanation
Indices: 81072277--81072425 Score: 185
Period size: 49 Copynumber: 3.0 Consensus size: 51
81072267 TCTATTGTGA
* * *
81072277 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
* * * * * *
81072328 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
* *
81072377 GGTCGCATGTGTAGTACTATGTGCAGACTACTATGCGTACCAGATAACT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACT
81072426 TTGGCTACAA
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
49 40 0.49
50 2 0.02
51 39 0.48
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
Found at i:81074590 original size:13 final size:13
Alignment explanation
Indices: 81074572--81074597 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81074562 TACTTACTAC
81074572 CACAATTCACAGT
1 CACAATTCACAGT
81074585 CACAATTCACAGT
1 CACAATTCACAGT
81074598 TACATCATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (13 bp):
CACAATTCACAGT
Found at i:81080256 original size:246 final size:246
Alignment explanation
Indices: 81079822--81080315 Score: 943
Period size: 246 Copynumber: 2.0 Consensus size: 246
81079812 CTACCACAAT
*
81079822 AATTTAAAAGGCCTTCATCCAAGCACCCAGGGTTTTATTAACATAAAACTAAACTTTTTGCTAAA
1 AATTTAAAAAGCCTTCATCCAAGCACCCAGGGTTTTATTAACATAAAACTAAACTTTTTGCTAAA
81079887 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCCCTCAGGACCCTTAACTACTTGAGTAGACATT
66 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCCCTCAGGACCCTTAACTACTTGAGTAGACATT
*
81079952 TAGTTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
131 TAATTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
81080017 GGCCCAATACTTCTAGGCCCAAATTTGGGGCGTTACAATCTACCCCCTTAA
196 GGCCCAATACTTCTAGGCCCAAATTTGGGGCGTTACAATCTACCCCCTTAA
*
81080068 AATTTAAAAAGCCTTCATCCAAGCACCCAGGGTTTTATTAACTTAAAACTAAACTTTTTGCTAAA
1 AATTTAAAAAGCCTTCATCCAAGCACCCAGGGTTTTATTAACATAAAACTAAACTTTTTGCTAAA
*
81080133 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCTCTCAGGACCCTTAACTACTTGAGTAGACATT
66 GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCCCTCAGGACCCTTAACTACTTGAGTAGACATT
*
81080198 TAATTGTGTCATTTCCTTACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
131 TAATTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
81080263 GGCCCAATACTTCTAGGCCCAAATTTGGGGCGTTACAATCTACCCCCTTAA
196 GGCCCAATACTTCTAGGCCCAAATTTGGGGCGTTACAATCTACCCCCTTAA
81080314 AA
1 AA
81080316 AAATTTCATC
Statistics
Matches: 243, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
246 243 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (246 bp):
AATTTAAAAAGCCTTCATCCAAGCACCCAGGGTTTTATTAACATAAAACTAAACTTTTTGCTAAA
GCCCAGGTTTGAACCCAAGACTTTTCCAACTCCCCTCAGGACCCTTAACTACTTGAGTAGACATT
TAATTGTGTCATTTCCTGACACAATTAAATACTTATATACAACCTCCTTACGAACCCACACTAAA
GGCCCAATACTTCTAGGCCCAAATTTGGGGCGTTACAATCTACCCCCTTAA
Found at i:81083305 original size:18 final size:20
Alignment explanation
Indices: 81083282--81083320 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
81083272 TGGGCCCATG
*
81083282 GGCCCAT-TGGGCCCA-CAT
1 GGCCCATCTCGGCCCATCAT
81083300 GGCCCATCTCGGCCCATCAT
1 GGCCCATCTCGGCCCATCAT
81083320 G
1 G
81083321 TCCAAAGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 7 0.39
20 4 0.22
ACGTcount: A:0.15, C:0.41, G:0.26, T:0.18
Consensus pattern (20 bp):
GGCCCATCTCGGCCCATCAT
Found at i:81095360 original size:43 final size:42
Alignment explanation
Indices: 81095216--81095360 Score: 116
Period size: 42 Copynumber: 3.4 Consensus size: 42
81095206 TGTTATTTTG
* * * * *
81095216 TGTAAGACCACGTCAGGGACGTTGGCATCGATTTGTGATTTACA
1 TGTAAGACCACATCTGGGAC-ATGGCATCGATATGAGA-TTACA
*** * *
81095260 TGTAAGACCGTGTCTGGAACATCGGCATCGTATATGAG-TT-CG
1 TGTAAGACCACATCTGGGACAT-GGCATCG-ATATGAGATTACA
*
81095302 TGTAAGACC-CTATCTGGGACAATGGCATCGATATGCGATTACA
1 TGTAAGACCAC-ATCTGGGAC-ATGGCATCGATATGAGATTACA
81095345 TGTAAGACCACATCTG
1 TGTAAGACCACATCTG
81095361 AGACGTTGGC
Statistics
Matches: 81, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
41 6 0.07
42 26 0.32
43 20 0.25
44 24 0.30
45 5 0.06
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACATGGCATCGATATGAGATTACA
Found at i:81096107 original size:54 final size:54
Alignment explanation
Indices: 81096060--81096194 Score: 216
Period size: 54 Copynumber: 2.5 Consensus size: 54
81096050 AGGATACCAA
* *
81096060 GTAAGACCATGGCAAGGCATGGCATTGGTAAGTTTTACAATGCAAGGAAATCAT
1 GTAAGACCATGGCAAGACATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCAT
*
81096114 GTAAGACCATGTCAAGACATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCAT
1 GTAAGACCATGGCAAGACATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCAT
** *
81096168 GTAAGACCATGTTAAGATATGGCATTG
1 GTAAGACCATGGCAAGACATGGCATTG
81096195 ATAAACTACG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (54 bp):
GTAAGACCATGGCAAGACATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCAT
Found at i:81096117 original size:27 final size:27
Alignment explanation
Indices: 81096087--81096172 Score: 65
Period size: 27 Copynumber: 3.2 Consensus size: 27
81096077 CATGGCATTG
81096087 GTAAGTTTTACAATGCAAGGAAATCAT
1 GTAAGTTTTACAATGCAAGGAAATCAT
* *
81096114 GTAAG----ACCATGTCAA-GACATGGCATT
1 GTAAGTTTTACAATG-CAAGGAAAT--CA-T
*
81096140 GGTAAGTTTTACAAGGCAAGGAAATCAT
1 -GTAAGTTTTACAATGCAAGGAAATCAT
81096168 GTAAG
1 GTAAG
81096173 ACCATGTTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 20
0.64 0.07 0.29
Matches are distributed among these distances:
23 9 0.20
24 3 0.07
25 2 0.05
26 1 0.02
27 15 0.34
28 1 0.02
29 2 0.05
30 3 0.07
31 8 0.18
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (27 bp):
GTAAGTTTTACAATGCAAGGAAATCAT
Found at i:81096232 original size:29 final size:29
Alignment explanation
Indices: 81096199--81096258 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
81096189 GCATTGATAA
81096199 ACTACGATAAGGCGAAGATCCCATGTACG
1 ACTACGATAAGGCGAAGATCCCATGTACG
81096228 ACTACGATAAGGCGAAGATCCCATGTACG
1 ACTACGATAAGGCGAAGATCCCATGTACG
81096257 AC
1 AC
81096259 CATGCTAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (29 bp):
ACTACGATAAGGCGAAGATCCCATGTACG
Found at i:81096267 original size:29 final size:29
Alignment explanation
Indices: 81096202--81096269 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
81096192 TTGATAAACT
*
81096202 ACGATAAGGCGAAGATCCCATGTACGACT
1 ACGATAAGGCGAAGATCCCATGTACGACC
81096231 ACGATAAGGCGAAGATCCCATGTACGACC
1 ACGATAAGGCGAAGATCCCATGTACGACC
* *
81096260 ATGCTAAGGC
1 ACGATAAGGC
81096270 ATGGCAATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.16
Consensus pattern (29 bp):
ACGATAAGGCGAAGATCCCATGTACGACC
Found at i:81096313 original size:53 final size:53
Alignment explanation
Indices: 81096234--81096338 Score: 133
Period size: 53 Copynumber: 2.0 Consensus size: 53
81096224 TACGACTACG
* * * * *
81096234 ATAAGGCGAAGATCCCATGTACGACCATG-CTAAGGCATGGCAATGGTGAGTTC
1 ATAAGGCGAAGATACCACGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTC
81096287 ATAAGGC-AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 ATAAGGCGAA-GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
81096339 TGAAAAGGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
52 2 0.04
53 42 0.93
54 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (53 bp):
ATAAGGCGAAGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
Found at i:81099658 original size:17 final size:17
Alignment explanation
Indices: 81099652--81099711 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
81099642 GAAAAATAAT
81099652 AGTTCATACAAAATATC
1 AGTTCATACAAAATATC
** **
81099669 AGTTCATACCGAATAAA
1 AGTTCATACAAAATATC
* * *
81099686 AATTCATGCAAAATAGC
1 AGTTCATACAAAATATC
81099703 AGTTCATAC
1 AGTTCATAC
81099712 TCCATCATAA
Statistics
Matches: 31, Mismatches: 12, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (17 bp):
AGTTCATACAAAATATC
Found at i:81105050 original size:21 final size:21
Alignment explanation
Indices: 81105026--81105067 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
81105016 TTCCAAGCAA
*
81105026 AAAGGG-GCACACGCCTGTGTG
1 AAAGGGTG-ACACGCCCGTGTG
81105047 AAAGGGTGACACGCCCGTGTG
1 AAAGGGTGACACGCCCGTGTG
81105068 TCTTCTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.24, C:0.24, G:0.38, T:0.14
Consensus pattern (21 bp):
AAAGGGTGACACGCCCGTGTG
Found at i:81106662 original size:48 final size:48
Alignment explanation
Indices: 81106287--81106700 Score: 508
Period size: 48 Copynumber: 8.6 Consensus size: 48
81106277 GTAAATTGTT
* * ** ** *
81106287 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATGTCAAGGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCT-CATAACATTGCC
* * * * * * ** *
81106335 GAGGCCATGTACCAGACATGGCCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGCC
* * *
81106383 GATGCCATG-TCCTAGACATGGTCTTACTCTGGCTCTCGTAACATTGCC
1 GATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCATAACATTGCC
*
81106431 GATGCGATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGCC
* * * *
81106479 GATGCCATATTCCAAACATAGTCTTACACTGGCTCTCATAATATTGTC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGCC
* * *
81106527 GATGCCATGTTCCAAACGTGATCTTACACTAGCTCTCATAACATTGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGCC
* * **
81106575 GATGCCATGTTCCAAACAAGGTCTTACACTGGTTCTCATAACATTATC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGCC
81106623 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGCC
*
81106671 GATGCCATGTTCCAAATATGGTCTTACACT
1 GATGCCATGTTCCAAACATGGTCTTACACT
81106701 AGCACACATA
Statistics
Matches: 319, Mismatches: 44, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
47 2 0.01
48 313 0.98
49 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATTGCC
Found at i:81111846 original size:21 final size:20
Alignment explanation
Indices: 81111798--81111846 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
81111788 GGGCACACGC
*
81111798 CCGTGTGAAAGGGCGACCTT
1 CCGTGTGAAAGGGCGACCGT
**
81111818 CTTATGTGAAAGGGCGACCCGT
1 C-CGTGTGAAAGGGCGA-CCGT
81111840 CCGTGTG
1 CCGTGTG
81111847 TCTTCTTAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 3
0.73 0.17 0.10
Matches are distributed among these distances:
20 1 0.05
21 17 0.77
22 4 0.18
ACGTcount: A:0.18, C:0.24, G:0.35, T:0.22
Consensus pattern (20 bp):
CCGTGTGAAAGGGCGACCGT
Done.