Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 255 of 325
Found at i:81121526 original size:47 final size:47
Alignment explanation
Indices: 81121475--81121621 Score: 213
Period size: 47 Copynumber: 3.1 Consensus size: 47
81121465 TTAGGATTTT
81121475 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81121522 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
81121569 ATGTGGTGAATATGAACATGTATATATGTGGTAAAGCCGAATGTCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
81121616 ATGTGA
1 ATGTGA
81121622 AAAATGTATG
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:81121577 original size:25 final size:25
Alignment explanation
Indices: 81121502--81121577 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
81121492 ATGCATATAT
81121502 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
81121527 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
81121549 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
81121574 GTGA
1 GTGA
81121578 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:81121652 original size:48 final size:48
Alignment explanation
Indices: 81121591--81121699 Score: 173
Period size: 48 Copynumber: 2.3 Consensus size: 48
81121581 TGAACATGTA
*
81121591 TATATGTGGTAAAGCCGAATGTCTAATGTGAAAAATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATG
* * *
81121639 TATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATG
*
81121687 CATATGTGGTAAA
1 TATATGTGGTAAA
81121700 TGTAACACCC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.38, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATG
Found at i:81129583 original size:47 final size:46
Alignment explanation
Indices: 81129506--81129641 Score: 177
Period size: 47 Copynumber: 2.9 Consensus size: 46
81129496 TGAAATATAT
*
81129506 ATATGAGATATGCATATGTGGTAAGGCCGAATGGCCAATGTGATGA
1 ATATGAGACATGCATATGTGGTAAGGCCGAATGGCCAATGTGATGA
* * *
81129552 ATGTGAG-CATGCATATGTCTGATAAGGCCGAATGGCCAATGTGGTGA
1 ATATGAGACATGCATATG--TGGTAAGGCCGAATGGCCAATGTGATGA
* *
81129599 ATATGAGATATGCATATGTGGTACA-GCCGAATGGTCAATGTGA
1 ATATGAGACATGCATATGTGGTA-AGGCCGAATGGCCAATGTGA
81129642 AATATATATA
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
45 9 0.12
46 26 0.34
47 33 0.43
48 9 0.12
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGAGACATGCATATGTGGTAAGGCCGAATGGCCAATGTGATGA
Found at i:81129660 original size:52 final size:52
Alignment explanation
Indices: 81129599--81129698 Score: 157
Period size: 52 Copynumber: 1.9 Consensus size: 52
81129589 AATGTGGTGA
*
81129599 ATATGAGATATGCATATGTGGTACAGCCGAATGG-TCAATGTGAAATATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATAT
* *
81129651 ATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
81129699 GTGGGCGATG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 43 0.98
53 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (52 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
Found at i:81129922 original size:14 final size:14
Alignment explanation
Indices: 81129903--81129930 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81129893 AGACCCGATG
81129903 ACTACGTGTGGAGA
1 ACTACGTGTGGAGA
81129917 ACTACGTGTGGAGA
1 ACTACGTGTGGAGA
81129931 TTTTGTCCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.36, T:0.21
Consensus pattern (14 bp):
ACTACGTGTGGAGA
Found at i:81133508 original size:13 final size:13
Alignment explanation
Indices: 81133487--81133523 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
81133477 CCCGGCAGGG
81133487 ACACGCCCGTGGC
1 ACACGCCCGTGGC
*
81133500 ACACTCCCGTGGC
1 ACACGCCCGTGGC
81133513 ACACGCCCGTG
1 ACACGCCCGTG
81133524 TTTGATTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.16, C:0.46, G:0.27, T:0.11
Consensus pattern (13 bp):
ACACGCCCGTGGC
Found at i:81137983 original size:19 final size:19
Alignment explanation
Indices: 81137956--81138000 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
81137946 TATATTGCTA
*
81137956 TACATGCCATACTTAAATT
1 TACAAGCCATACTTAAATT
81137975 TACAAGCCATACTTAAATT
1 TACAAGCCATACTTAAATT
81137994 TACAAGC
1 TACAAGC
81138001 ATTTACCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (19 bp):
TACAAGCCATACTTAAATT
Found at i:81138581 original size:93 final size:93
Alignment explanation
Indices: 81138452--81138623 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
81138442 CGCCCATAAG
* *
81138452 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81138517 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
81138545 CGAATTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81138610 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81138624 TCAACCATCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:81138620 original size:46 final size:46
Alignment explanation
Indices: 81138445--81138620 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
81138435 TGTAACCCGC
* * *
81138445 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
81138491 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
81138541 -C-TCA-CGAATTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81138584 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81138621 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81145955 original size:93 final size:93
Alignment explanation
Indices: 81145842--81146013 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81145832 CGCCCATAAG
* *
81145842 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81145907 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
81145935 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81146000 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81146014 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:81146010 original size:46 final size:46
Alignment explanation
Indices: 81145835--81146010 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81145825 TGTAACCCGC
* * *
81145835 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
81145881 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
81145931 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81145974 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81146011 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81159086 original size:53 final size:53
Alignment explanation
Indices: 81158903--81159095 Score: 188
Period size: 53 Copynumber: 3.6 Consensus size: 53
81158893 AGAATACCAA
* * * *
81158903 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGGCATGGCAATGGTAAG-TTCATAAGGCAAGGATATCAT
* * * * * * ** **
81158957 GTAAGACCATGTCAAGACATGGCATTGATAAACTATGATAAGGCAAACATCCCAT
1 GTAAGACCATGCCAAGGCATGGCAATGGT-AAGT-TCATAAGGCAAGGATATCAT
* * *
81159012 GTAAGACCATGCCAAGCCATGGCAATGGTGAGTTCATAAGGCAAGGATATCAC
1 GTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGCAAGGATATCAT
* *
81159065 GTAAGATCATGTCAAGGCATGGCAATGGTAA
1 GTAAGACCATGCCAAGGCATGGCAATGGTAA
81159096 TTTTAAAAAG
Statistics
Matches: 110, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
53 41 0.37
54 29 0.26
55 40 0.36
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGCAAGGATATCAT
Found at i:81160975 original size:28 final size:29
Alignment explanation
Indices: 81160910--81161008 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 29
81160900 CATGAGATTG
* *
81160910 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
81160939 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
81160967 GCACTAAGTGTGCGA-GTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
*
81160995 GCACTAAGTATGCG
1 GCACTAAGTGTGCG
81161009 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
27 4 0.06
28 41 0.65
29 14 0.22
30 4 0.06
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:81167695 original size:28 final size:28
Alignment explanation
Indices: 81167630--81167728 Score: 121
Period size: 28 Copynumber: 3.5 Consensus size: 28
81167620 CATGAGATTG
* *
81167630 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTT--GATTATATA
81167659 GCACTAAGTGTGCGAGGTTGATTATATA
1 GCACTAAGTGTGCGAGGTTGATTATATA
* *
81167687 GCACTAAGTGTGCGAGTTTGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTGATTATAT-A
81167715 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
81167729 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
27 1 0.02
28 45 0.70
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGGTTGATTATATA
Found at i:81169140 original size:27 final size:24
Alignment explanation
Indices: 81169079--81169141 Score: 83
Period size: 24 Copynumber: 2.5 Consensus size: 24
81169069 TTTCTTTCTT
81169079 TTCTTTT-TTTTTATGTTGTTGTC
1 TTCTTTTCTTTTTATGTTGTTGTC
*
81169102 TTCTTTTTTTTTTATGTTGTTGTC
1 TTCTTTTCTTTTTATGTTGTTGTC
81169126 TATCTCTATTCTTTTT
1 T-TCT-T-TTCTTTTT
81169142 GACAAGAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
23 7 0.20
24 17 0.49
25 3 0.09
26 1 0.03
27 7 0.20
ACGTcount: A:0.06, C:0.11, G:0.10, T:0.73
Consensus pattern (24 bp):
TTCTTTTCTTTTTATGTTGTTGTC
Found at i:81172556 original size:27 final size:27
Alignment explanation
Indices: 81172497--81172557 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
81172487 CATACATCTT
81172497 ATAGGGGCATAACAGTCATTTTATCAC
1 ATAGGGGCATAACAGTCATTTTATCAC
* *
81172524 ACAGGGGCATAATAGTCATTTTATCA-
1 ATAGGGGCATAACAGTCATTTTATCAC
81172550 ATTAGGGG
1 A-TAGGGG
81172558 TCCAGGTACA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (27 bp):
ATAGGGGCATAACAGTCATTTTATCAC
Found at i:81186836 original size:48 final size:47
Alignment explanation
Indices: 81186755--81186956 Score: 287
Period size: 48 Copynumber: 4.2 Consensus size: 47
81186745 TACATGAATC
* * *
81186755 CACATATCATCACTGATGCCATGTCCCGAACATGGTATTACACTGGCA
1 CACATATCATCACCGATGCCATGTCCAG-ACATGGTCTTACACTGGCA
81186803 CACATATCATCACCGATGCCATGTCCTAGACATGGTCTTACACTGGCA
1 CACATATCATCACCGATGCCATGTCC-AGACATGGTCTTACACTGGCA
**
81186851 CACATATCATCGTCGATGCCATGTCGCAGACATGGTCTTACACTGGCA
1 CACATATCATCACCGATGCCATGTC-CAGACATGGTCTTACACTGGCA
* * * *
81186899 CACATATCATCGCCAATTCCATGTCCTAGACATGGTCTTACATTGGCA
1 CACATATCATCACCGATGCCATGTCC-AGACATGGTCTTACACTGGCA
81186947 CACATATCAT
1 CACATATCAT
81186957 ATATCATGCT
Statistics
Matches: 142, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
47 1 0.01
48 139 0.98
49 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATATCATCACCGATGCCATGTCCAGACATGGTCTTACACTGGCA
Found at i:81198612 original size:79 final size:81
Alignment explanation
Indices: 81198476--81198658 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
81198466 TCGAATGATG
* *
81198476 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
*
81198540 TGTGCGAGTTAC-TAA
66 TGTACGAGTTACGTAA
* * **
81198555 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
81198617 TTTGTACGAGTTGCTGTAA
64 TTTGTACGAGTTAC-GTAA
*
81198636 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
81198659 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 29 0.33
81 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAGTTACGTAA
Found at i:81198666 original size:40 final size:40
Alignment explanation
Indices: 81198476--81198667 Score: 203
Period size: 40 Copynumber: 4.8 Consensus size: 40
81198466 TCGAATGATG
* * * *
81198476 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAA
* * *
81198516 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* *
81198556 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
* * *
81198595 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTGCTGTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT-AAA
* *
81198636 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
81198668 AGCTATATCC
Statistics
Matches: 131, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
39 35 0.27
40 86 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:81198682 original size:79 final size:78
Alignment explanation
Indices: 81198476--81198683 Score: 212
Period size: 79 Copynumber: 2.6 Consensus size: 78
81198466 TCGAATGATG
* *
81198476 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCAT
*
81198539 TTGTGCGAGTTACTAA
63 TTGTACGAGTTACTAA
* *
81198555 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCA
*
81198617 TTTGTACGAGTTGCTGTAA
62 TTTGTACGAGTTAC--TAA
* **
81198636 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
81198684 ATTCTGAAGG
Statistics
Matches: 108, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
78 1 0.01
79 60 0.56
80 44 0.41
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTG
TACGAGTTACTAA
Found at i:81213180 original size:27 final size:26
Alignment explanation
Indices: 81213141--81213192 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
81213131 TGCCCTGGTG
*
81213141 GCTTTGCCACGTTTACTGTTATTAGCA
1 GCTTTGCCACG-TTACTGTTAGTAGCA
**
81213168 GCTTTGCTGCGTTACTGTTAGTAGC
1 GCTTTGCCACGTTACTGTTAGTAGC
81213193 TTCGCTGCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.40
Consensus pattern (26 bp):
GCTTTGCCACGTTACTGTTAGTAGCA
Found at i:81219885 original size:16 final size:16
Alignment explanation
Indices: 81219861--81219901 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
81219851 CATTGTTTCC
*
81219861 TTTTCTTTCTTTTCTT
1 TTTTTTTTCTTTTCTT
*
81219877 TTTTTTTTCTTTTGTT
1 TTTTTTTTCTTTTCTT
*
81219893 CTTTTTTTC
1 TTTTTTTTC
81219902 ACTTTTATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (16 bp):
TTTTTTTTCTTTTCTT
Found at i:81219894 original size:19 final size:20
Alignment explanation
Indices: 81219861--81219900 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
81219851 CATTGTTTCC
*
81219861 TTTTCTTTCTTTTCTTTTTT
1 TTTTCTTTCTGTTCTTTTTT
81219881 TTTTCTTT-TGTTCTTTTTT
1 TTTTCTTTCTGTTCTTTTTT
81219900 T
1 T
81219901 CACTTTTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (20 bp):
TTTTCTTTCTGTTCTTTTTT
Found at i:81220962 original size:22 final size:22
Alignment explanation
Indices: 81220907--81220953 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
81220897 AAAACATCTA
81220907 AAAAGAATCTTTTCACAAAAAT
1 AAAAGAATCTTTTCACAAAAAT
81220929 AAAAGAATCTTTTCACAAAAAT
1 AAAAGAATCTTTTCACAAAAAT
81220951 AAA
1 AAA
81220954 GTGCACTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.57, C:0.13, G:0.04, T:0.26
Consensus pattern (22 bp):
AAAAGAATCTTTTCACAAAAAT
Found at i:81224872 original size:27 final size:27
Alignment explanation
Indices: 81224809--81224874 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
81224799 TACCCTCAGT
81224809 TTGTAAAATGACCGTAATACCCTTGTA
1 TTGTAAAATGACCGTAATACCCTTGTA
** *
81224836 GGGTAAAATGACCGTAGTA-CCTCTGTA
1 TTGTAAAATGACCGTAATACCCT-TGTA
*
81224863 TTGTAGAATGAC
1 TTGTAAAATGAC
81224875 GATTATGCCC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 3 0.09
27 29 0.91
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (27 bp):
TTGTAAAATGACCGTAATACCCTTGTA
Found at i:81225259 original size:21 final size:21
Alignment explanation
Indices: 81225217--81225259 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
81225207 TATCCCCACA
*
81225217 TGGTGTGTTGGTTGGTACGGG
1 TGGTGTGTTGGTTGGAACGGG
81225238 TGGTGTGTTGGTT-GAACTGGG
1 TGGTGTGTTGGTTGGAAC-GGG
81225259 T
1 T
81225260 TGGGAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.07, C:0.05, G:0.49, T:0.40
Consensus pattern (21 bp):
TGGTGTGTTGGTTGGAACGGG
Found at i:81225320 original size:27 final size:28
Alignment explanation
Indices: 81225290--81225346 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
81225280 GCATTTGATA
* *
81225290 CTGATTCT-ATATTGGGCTTAGGCCCAC
1 CTGATTCTGATAATGGGCTAAGGCCCAC
*
81225317 CTGATTCTGTTAATGGGCTAAGGCCCAC
1 CTGATTCTGATAATGGGCTAAGGCCCAC
81225345 CT
1 CT
81225347 CGTACTGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 8 0.31
28 18 0.69
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGATTCTGATAATGGGCTAAGGCCCAC
Found at i:81225354 original size:28 final size:28
Alignment explanation
Indices: 81225302--81225355 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
81225292 GATTCTATAT
* *
81225302 TGGGCTTAGGCCCACCTGATTCTGTTAA
1 TGGGCTAAGGCCCACCTGATACTGTTAA
81225330 TGGGCTAAGGCCCACCTCG-TACTGTT
1 TGGGCTAAGGCCCACCT-GATACTGTT
81225356 TCTGTGATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.17, C:0.28, G:0.26, T:0.30
Consensus pattern (28 bp):
TGGGCTAAGGCCCACCTGATACTGTTAA
Found at i:81236046 original size:41 final size:41
Alignment explanation
Indices: 81235986--81236156 Score: 128
Period size: 41 Copynumber: 4.0 Consensus size: 41
81235976 GACATTAGGG
* **
81235986 TTATGTGTGATTTTGTGTAAGACCATATCTGGGATATGGCA
1 TTATATGTGATTTCATGTAAGACCATATCTGGGATATGGCA
* * * * * *
81236027 TTATATGTGATTTCGTGTAAAACCATGTTTGGGACATGGAA
1 TTATATGTGATTTCATGTAAGACCATATCTGGGATATGGCA
* * ** * * * *
81236068 TTGATACGAGACATCATGTAAGATCATAGCTAGGCTATCGGCA
1 TT-ATATGTGATTTCATGTAAGACCATATCTGGGATAT-GGCA
81236111 TCGATATATGTGATCTT-ATGTAAGACCATATCTGGGATATGGCA
1 T---TATATGTGAT-TTCATGTAAGACCATATCTGGGATATGGCA
81236155 TT
1 TT
81236157 GGCATCTTAC
Statistics
Matches: 95, Mismatches: 29, Indels: 12
0.70 0.21 0.09
Matches are distributed among these distances:
41 37 0.39
42 22 0.23
43 4 0.04
44 5 0.05
45 25 0.26
46 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.35
Consensus pattern (41 bp):
TTATATGTGATTTCATGTAAGACCATATCTGGGATATGGCA
Found at i:81237972 original size:27 final size:27
Alignment explanation
Indices: 81237942--81238004 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
81237932 CATTTCAGTT
* * *
81237942 ATTTTACCACTTAAGGGCAAAATAGTC
1 ATTTTACCACATAAGGGCAAAACAATC
*
81237969 ATTTTACCTCATAAGGGCAAAACAATC
1 ATTTTACCACATAAGGGCAAAACAATC
81237996 ATTTTACCA
1 ATTTTACCA
81238005 ATTTGAGGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
ATTTTACCACATAAGGGCAAAACAATC
Found at i:81239382 original size:12 final size:12
Alignment explanation
Indices: 81239367--81239405 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
81239357 TTCCTCCCCT
*
81239367 AATCTCTCCTAA
1 AATCTCTCCTCA
*
81239379 AATCCCTCCTCA
1 AATCTCTCCTCA
81239391 AATCTCTCCTCA
1 AATCTCTCCTCA
81239403 AAT
1 AAT
81239406 TCCTCAACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31
Consensus pattern (12 bp):
AATCTCTCCTCA
Found at i:81246723 original size:20 final size:20
Alignment explanation
Indices: 81246700--81246738 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
81246690 ATTTTCATGG
81246700 ACTAAATAGCATTTTAAACT
1 ACTAAATAGCATTTTAAACT
81246720 ACTAAATAGCATTTTAAAC
1 ACTAAATAGCATTTTAAAC
81246739 ATACATAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.33
Consensus pattern (20 bp):
ACTAAATAGCATTTTAAACT
Found at i:81247962 original size:30 final size:30
Alignment explanation
Indices: 81247917--81247976 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81247907 ATTTAATACG
*
81247917 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
81247947 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
81247977 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:81255421 original size:30 final size:29
Alignment explanation
Indices: 81255376--81255434 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
81255366 ATTTAATACG
*
81255376 AACTTTGGCAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAATTACACTTTTGCCCCTA
*
81255405 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCA-AATTACACTTTTGCCCCTA
81255435 GGCTGGGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.39
Consensus pattern (29 bp):
AACTTTGGCAAATTACACTTTTGCCCCTA
Found at i:81268175 original size:12 final size:12
Alignment explanation
Indices: 81268158--81268189 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
81268148 GGTTTGGCAT
81268158 GGCCTAGCACAC
1 GGCCTAGCACAC
81268170 GGCCTAGCACAC
1 GGCCTAGCACAC
81268182 GGCCTAGC
1 GGCCTAGC
81268190 CATATGGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.22, C:0.41, G:0.28, T:0.09
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:81274341 original size:16 final size:17
Alignment explanation
Indices: 81274320--81274352 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
81274310 CACATTGAAG
81274320 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
81274336 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
81274353 CTTTTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:81276114 original size:29 final size:27
Alignment explanation
Indices: 81276096--81276165 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
81276086 ATATTAAGTC
81276096 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
81276123 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
81276151 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
81276166 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:81276159 original size:28 final size:28
Alignment explanation
Indices: 81276096--81276193 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
81276086 ATATTAAGTC
*
81276096 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
81276123 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
81276151 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
81276180 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81276194 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81278382 original size:60 final size:59
Alignment explanation
Indices: 81278304--81278439 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
81278294 CAGTGTGAAC
*
81278304 TGGGCCTTAGCCCATATCAATATTAATCTAGGCCATAGCCCCT-TAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTAGGCCATAG-CCCTATACAAG--TCGAGA-TATAT
* * *
81278365 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTAGGCCATAGCCCTATACAAGTCGAGATATAT
*
81278424 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
81278440 TAACACAGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
59 26 0.39
60 33 0.49
61 8 0.12
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTAGGCCATAGCCCTATACAAGTCGAGATATAT
Found at i:81278404 original size:28 final size:27
Alignment explanation
Indices: 81278303--81278404 Score: 71
Period size: 28 Copynumber: 3.5 Consensus size: 27
81278293 TCAGTGTGAA
* *
81278303 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
* *
81278331 CTAGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
81278363 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
81278391 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
81278405 TATACAAGTC
Statistics
Matches: 57, Mismatches: 9, Indels: 16
0.70 0.11 0.20
Matches are distributed among these distances:
27 7 0.12
28 26 0.46
30 2 0.04
32 16 0.28
33 6 0.11
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:81278884 original size:11 final size:11
Alignment explanation
Indices: 81278868--81278892 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81278858 TTTTAGGGTT
81278868 TACATACATCC
1 TACATACATCC
81278879 TACATACATCC
1 TACATACATCC
81278890 TAC
1 TAC
81278893 CGAGCGTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.28
Consensus pattern (11 bp):
TACATACATCC
Found at i:81280887 original size:19 final size:18
Alignment explanation
Indices: 81280850--81280893 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
81280840 ATACATGCAG
81280850 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
81280867 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
81280886 TACTAATT
1 TAATAATT
81280894 AAAATTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:81286647 original size:26 final size:26
Alignment explanation
Indices: 81286618--81286669 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
81286608 CCTTCAGAGC
81286618 TAGAAAAGATTCATAATGTATTTCAT
1 TAGAAAAGATTCATAATGTATTTCAT
81286644 TAGAAAAGATTCATAATGTATTTCAT
1 TAGAAAAGATTCATAATGTATTTCAT
81286670 GTATCGATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (26 bp):
TAGAAAAGATTCATAATGTATTTCAT
Found at i:81289461 original size:20 final size:20
Alignment explanation
Indices: 81289436--81289484 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
81289426 ATTTTCAAAA
*
81289436 ATTGCTACACTGATGACCAG
1 ATTGCTACACCGATGACCAG
*
81289456 ATTGCTACACCGATTACCAG
1 ATTGCTACACCGATGACCAG
81289476 ATTGCTACA
1 ATTGCTACA
81289485 GAAAGACGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (20 bp):
ATTGCTACACCGATGACCAG
Found at i:81290565 original size:46 final size:46
Alignment explanation
Indices: 81290515--81290733 Score: 282
Period size: 46 Copynumber: 4.7 Consensus size: 46
81290505 TGGTTGAGCA
81290515 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
*
81290561 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
81290607 TCGGAACTCGTTGAGTTGAGTCCGAGTTCA--TA-AGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * * *
81290652 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
81290700 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81290734 GGGTCGGGTT
Statistics
Matches: 150, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
43 6 0.04
44 2 0.01
45 2 0.01
46 103 0.69
47 28 0.19
48 2 0.01
49 2 0.01
50 5 0.03
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:81290689 original size:93 final size:91
Alignment explanation
Indices: 81290516--81290731 Score: 274
Period size: 93 Copynumber: 2.3 Consensus size: 91
81290506 GGTTGAGCAT
* * *
81290516 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATAGATGCAAAGGTCCAAACTCGTTGAGTTGAG
* * *
81290581 TCTGAGTTCACTTATGGATGCAAATGT
65 TCCGAGTTCACTTATGGATGCAAACGC
* *
81290608 CGGAACTCGTTGAGTTGAGTCCGAGTTCA-TA-AGATGTAACTAGGCATCCAAACTCGTTGAGTT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTATAGATGCAA--AGG--TCCAAACTCGTTGAGTT
* *
81290671 GAGTCCGAGTTCATTTATGGATGCGAACGC
62 GAGTCCGAGTTCACTTATGGATGCAAACGC
*
81290701 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT
81290732 TAGGGTCGGG
Statistics
Matches: 107, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
89 6 0.06
90 2 0.02
91 2 0.02
92 28 0.26
93 68 0.64
94 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (91 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTATAGATGCAAAGGTCCAAACTCGTTGAGTTGAGT
CCGAGTTCACTTATGGATGCAAACGC
Found at i:81290995 original size:19 final size:20
Alignment explanation
Indices: 81290958--81290995 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81290948 ATAAGGTGGT
81290958 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
81290978 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
81290996 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:81307131 original size:16 final size:15
Alignment explanation
Indices: 81307106--81307136 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
81307096 AACATCTCAG
81307106 AAAAATAAAGAAAAC
1 AAAAATAAAGAAAAC
81307121 AAAACATAAAGAAAAC
1 AAAA-ATAAAGAAAAC
81307137 CCAAAACTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.77, C:0.10, G:0.06, T:0.06
Consensus pattern (15 bp):
AAAAATAAAGAAAAC
Found at i:81309401 original size:10 final size:10
Alignment explanation
Indices: 81309386--81309434 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
81309376 AAGTAGTTTT
81309386 AATAATAAAA
1 AATAATAAAA
81309396 AATAATAAAA
1 AATAATAAAA
81309406 AATAA-AATAA
1 AATAATAA-AA
* *
81309416 AATAACATAA
1 AATAATAAAA
81309426 AATAATAAA
1 AATAATAAA
81309435 TAAGCATTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.91
11 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (10 bp):
AATAATAAAA
Found at i:81309414 original size:15 final size:15
Alignment explanation
Indices: 81309394--81309434 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
81309384 TTAATAATAA
81309394 AAAATAATAAAAAAT
1 AAAATAATAAAAAAT
*
81309409 AAAATAA-AATAACAT
1 AAAATAATAA-AAAAT
81309424 AAAATAATAAA
1 AAAATAATAAA
81309435 TAAGCATTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 19 0.83
16 2 0.09
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (15 bp):
AAAATAATAAAAAAT
Found at i:81358429 original size:39 final size:40
Alignment explanation
Indices: 81358327--81358479 Score: 267
Period size: 39 Copynumber: 3.9 Consensus size: 40
81358317 GGACATAGCT
*
81358327 ACTCGCTC-AATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
81358366 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
81358406 ACT-GCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
81358445 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
81358480 CATCCGAATA
Statistics
Matches: 109, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 62 0.57
40 47 0.43
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:81358431 original size:79 final size:78
Alignment explanation
Indices: 81358335--81358479 Score: 281
Period size: 79 Copynumber: 1.8 Consensus size: 78
81358325 CTACTCGCTC
81358335 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGTT
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCG-GACTTAGCCCGGTT
81358400 ATAGTAACTGCACA
65 ATAGTAACTGCACA
81358414 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTA
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTA
81358479 T
66 T
81358480 CATCCGAATA
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 16 0.24
79 50 0.76
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTA
TAGTAACTGCACA
Found at i:81366397 original size:40 final size:40
Alignment explanation
Indices: 81366316--81366497 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
81366306 CAACCAAGTA
* ** *
81366316 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
81366355 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
81366395 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
81366435 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
81366475 CCTTCGGTACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
81366498 CATCCGAATA
Statistics
Matches: 135, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.10
40 121 0.90
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:81369979 original size:24 final size:24
Alignment explanation
Indices: 81369952--81369999 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
81369942 TGTTTTATGA
81369952 AAGTATTTAAAAAGAATATTGTTT
1 AAGTATTTAAAAAGAATATTGTTT
81369976 AAGTATTTAAAAAGAATATTGTTT
1 AAGTATTTAAAAAGAATATTGTTT
81370000 TTGAAAATCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.42
Consensus pattern (24 bp):
AAGTATTTAAAAAGAATATTGTTT
Found at i:81387808 original size:27 final size:26
Alignment explanation
Indices: 81387770--81387851 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
81387760 CAGCATGGCT
*
81387770 ACCAGAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGACAGAGCC
*
81387796 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGA-ACAGATATTGTGACAGAGCC
* * *
81387823 ACCAGAATCAGATAATGTGGCAAAGCC
1 ACCAGAA-CAGATATTGTGACAGAGCC
81387850 AC
1 AC
81387852 TTAACAGAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 7 0.14
27 43 0.86
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGACAGAGCC
Found at i:81388035 original size:98 final size:98
Alignment explanation
Indices: 81387873--81388111 Score: 363
Period size: 98 Copynumber: 2.4 Consensus size: 98
81387863 CGTGGCACAA
* * * *
81387873 AGCCATCGATAACGGGTCTATAATC-GACATGAAGCCCACAATATTGATACGAAGCCCACAATAA
1 AGCCATTGATAACGGGTCTATAATCAG-CACGAAGCCTACAATATCGATACGAAGCCCACAATAA
* *
81387937 CGGCACATAACCATCGGTAACATGATCGGCACTC
65 CGGCACACAACCATCGGTAACATGATCGACACTC
81387971 AGCCATTGATAACGGGTCTATAATCAGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
1 AGCCATTGATAACGGGTCTATAATCAGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
* *
81388036 GGCACACAGCCTTCGGTAACATGATCGACACTC
66 GGCACACAACCATCGGTAACATGATCGACACTC
* * *
81388069 AGCCGTTGATAACGGGTCTATAATTAGCACGAAACCTACAATA
1 AGCCATTGATAACGGGTCTATAATCAGCACGAAGCCTACAATA
81388112 ACGGCACACA
Statistics
Matches: 129, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
98 128 0.99
99 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (98 bp):
AGCCATTGATAACGGGTCTATAATCAGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
GGCACACAACCATCGGTAACATGATCGACACTC
Found at i:81388201 original size:27 final size:26
Alignment explanation
Indices: 81388162--81388244 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
81388152 TCGATCGGTC
*
81388162 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGACAAAGCCACCAG
* *
81388188 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAAAGCCACCAG
* *
81388215 AACAGATATTTGTGCCATAGCCACCAG
1 AACAGATA-TTGTGACAAAGCCACCAG
81388242 AAC
1 AAC
81388245 GCTTCCTCCA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGACAAAGCCACCAG
Found at i:81388500 original size:27 final size:27
Alignment explanation
Indices: 81388470--81388790 Score: 366
Period size: 27 Copynumber: 11.9 Consensus size: 27
81388460 GGTAAAATGG
* *
81388470 TAATTTTACCCCACAAGGGTATCTT-GA
1 TAATTCTACCCTACAAGGGTAT-TTCGA
*
81388497 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
81388523 GTAATTCTACCCTACATGGGTATTTCAA
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
81388551 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
81388578 TATTTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
81388605 TAATTCTACCCTACAGGGGTATTT-TA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
81388631 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * *
81388659 TATTTCTACCCTACAAGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
81388686 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
81388713 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
81388740 TAATTGTACCCTA-TAGTGGTATTT-TA
1 TAATTCTACCCTACAAG-GGTATTTCGA
81388766 GT-ATTCTACCCTACAAGGGTATTTC
1 -TAATTCTACCCTACAAGGGTATTTC
81388791 AGTAATTTTA
Statistics
Matches: 258, Mismatches: 27, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
26 23 0.09
27 234 0.91
28 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:81388598 original size:81 final size:81
Alignment explanation
Indices: 81388469--81388797 Score: 448
Period size: 81 Copynumber: 4.1 Consensus size: 81
81388459 GGGTAAAATG
* * * * * *
81388469 GTAATTTTACCCCACAAGGGTATCTT-GATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
1 GTAATTCTACCCTACAGGGGTAT-TTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTAC
*
81388533 CCTACATGGGTATTTCA
65 CCTACAAGGGTATTTCA
* *
81388550 ATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACC
* *
81388615 CTACAGGGGTATTTTA
66 CTACAAGGGTATTTCA
**
81388631 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACC
*
81388696 CTACAAGGGTATTTCG
66 CTACAAGGGTATTTCA
* * * * *
81388712 GTAATTCTACCCTACAAGGGTATTTCGGTAATTGTACCCTA-TAGTGGTATTTTAGT-ATTCTAC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAG-GGTATTTCAGTAATTCTAC
81388775 CCTACAAGGGTATTTCA
65 CCTACAAGGGTATTTCA
81388792 GTAATT
1 GTAATT
81388798 TTACAAATCG
Statistics
Matches: 223, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
80 33 0.15
81 190 0.85
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACC
CTACAAGGGTATTTCA
Found at i:81388815 original size:27 final size:27
Alignment explanation
Indices: 81388781--81389093 Score: 311
Period size: 27 Copynumber: 11.7 Consensus size: 27
81388771 CTACCCTACA
81388781 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
**
81388808 AGGGTATTTCAGTAATTTTGTAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
**
81388835 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
81388862 AGGGTATTTTAGTAATTTAACAAATAG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
81388889 AGGGTATTTCAGTGATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* *
81388916 AAGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
81388943 AGGGTATTTCAGTGATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* *
81388970 AAGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
81388997 AGGGTATTGCAGTAATTTTAC-GATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
81389023 ACGGTATTTC-GATAATTTTATAAACCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* *
81389050 -GGGTACTTTGA-TAATTTTAC-AATTG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
81389075 -GGGTATTTCAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
81389094 GTAAACTAAA
Statistics
Matches: 232, Mismatches: 43, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
24 4 0.02
25 17 0.07
26 33 0.14
27 175 0.75
28 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:81391321 original size:27 final size:26
Alignment explanation
Indices: 81391284--81391354 Score: 97
Period size: 27 Copynumber: 2.7 Consensus size: 26
81391274 AGTATGGTTG
*
81391284 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGATAGAGCCA
*
81391310 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGATAGAGCCA
*
81391337 CCAGAATCAGATAATGTG
1 CCAGAA-CAGATATTGTG
81391355 GCAAAGCCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 6 0.15
27 34 0.85
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.23
Consensus pattern (26 bp):
CCAGAACAGATATTGTGATAGAGCCA
Found at i:81391355 original size:27 final size:27
Alignment explanation
Indices: 81391284--81391364 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
81391274 AGTATGGTTG
* *
81391284 CCAGAA-CAGATATTGTGATAGAGTCA
1 CCAGAATCAGATATTGTGGTAGAGCCA
81391310 CCAG-ATACAGATATTGTGGTAGAGCCA
1 CCAGAAT-CAGATATTGTGGTAGAGCCA
* * *
81391337 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATATTGTGGTAGAGCCA
81391364 C
1 C
81391365 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 40 0.85
28 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGGTAGAGCCA
Found at i:81391535 original size:20 final size:20
Alignment explanation
Indices: 81391506--81391546 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
81391496 CGGGTCTATA
*
81391506 ATCGACACGAAGCCTACAAT
1 ATCGACACGAAGCCCACAAT
*
81391526 ATCGATACGAAGCCCACAAT
1 ATCGACACGAAGCCCACAAT
81391546 A
1 A
81391547 ACGGCACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.29, G:0.15, T:0.15
Consensus pattern (20 bp):
ATCGACACGAAGCCCACAAT
Found at i:81391553 original size:98 final size:98
Alignment explanation
Indices: 81391394--81391622 Score: 361
Period size: 98 Copynumber: 2.3 Consensus size: 98
81391384 AAAGCCATCA
* * *
81391394 ATAACGGGTCTATAGTCGGCACGAAGCCTACAATATCGAGACGAAGCCCACAATAATGGCACACA
1 ATAACGGGTCTATAATCGACACGAAGCCTACAATATCGAGACGAAGCCCACAATAACGGCACACA
* *
81391459 GCCTTTGGTAACATGATCGGCACTCAGCCATTG
66 GCCTTCGGTAACATGATCGACACTCAGCCATTG
*
81391492 ATAACGGGTCTATAATCGACACGAAGCCTACAATATCGATACGAAGCCCACAATAACGGCACACA
1 ATAACGGGTCTATAATCGACACGAAGCCTACAATATCGAGACGAAGCCCACAATAACGGCACACA
*
81391557 GCCTTCGGTAACATGATCGACACTCATCCATTG
66 GCCTTCGGTAACATGATCGACACTCAGCCATTG
* *
81391590 ATAACAGGTCTATAATC-AGCACGAAACCTACAA
1 ATAACGGGTCTATAATCGA-CACGAAGCCTACAA
81391623 CAACGGCACA
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
97 1 0.01
98 120 0.99
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (98 bp):
ATAACGGGTCTATAATCGACACGAAGCCTACAATATCGAGACGAAGCCCACAATAACGGCACACA
GCCTTCGGTAACATGATCGACACTCAGCCATTG
Found at i:81391714 original size:27 final size:26
Alignment explanation
Indices: 81391675--81391757 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
81391665 TCGATCGGTC
*
81391675 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGACAAAGCCACCAG
* *
81391701 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAAAGCCACCAG
* *
81391728 AACAGATATTTGTGCCATAGCCACCAG
1 AACAGATA-TTGTGACAAAGCCACCAG
81391755 AAC
1 AAC
81391758 GCTTCCTCCA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGACAAAGCCACCAG
Found at i:81392111 original size:81 final size:81
Alignment explanation
Indices: 81391981--81392500 Score: 641
Period size: 81 Copynumber: 6.4 Consensus size: 81
81391971 GGGGTAAAAT
* * *
81391981 GGTAATTTTACCCCACAAGGGTATCTT-GATAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
1 GGTAATTCTACCCTACAAGGGTAT-TTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
*
81392045 CCCTACATGGGTATTTC
65 CCCTACAGGGGTATTTC
** * * * *
81392062 AATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAATAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
**
81392127 CCTACAGGGGTAAAAT-
66 CCTACAGGGGT-ATTTC
* * * * * *
81392143 GGTAATTTTACCCCACAAGTGTATCTCGATAATTCTACCCTATAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* *
81392208 ACTACAAGGGTATTTC
66 CCTACAGGGGTATTTC
* * *
81392224 GGTAATTCTACCTTAC-AGAGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCATTAATTCTA
1 GGTAATTCTACCCTACAAG-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
81392288 CCCTACAGGGGTATTTC
65 CCCTACAGGGGTATTTC
* * * *
81392305 GGTATTTCTACCCTACAAAGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
*
81392370 CCTATAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * * * * *
81392386 GGTATTTCTACCCTACAAGGGTATTTCGATGATTCTACCGTACAAGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* * *
81392451 CCTATAGTGGTATTTT
66 CCTACAGGGGTATTTC
* *
81392467 AGTAATTCTACCCTACAAGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT
81392501 TTGCAAACTG
Statistics
Matches: 374, Mismatches: 60, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
80 6 0.02
81 365 0.98
82 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:81392493 original size:54 final size:54
Alignment explanation
Indices: 81391982--81392500 Score: 641
Period size: 54 Copynumber: 9.6 Consensus size: 54
81391972 GGGTAAAATG
* * *
81391982 GTAATTTTACCCCACAAGGGTATCTTGA-TAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTAT-TTCAGTAATTCTACCCTACAGGGGTATTTCA
* * *
81392036 GTAATTCTACCCTACATGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * ** *
81392090 GTATTTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTAAAAT-G
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGT-ATTTCA
* * * * *
81392144 GTAATTTTACCCCACAAGTGTATCTC-GATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCA
* * * *
81392198 GTAATTCTACACTACAAGGGTATTTCGGTAATTCTACCTTACAGAGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * *
81392252 GTAATTCTACCCTACAGGGGTATTTCATTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * *
81392306 GTATTTCTACCCTACAAAGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * * *
81392360 GTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * * * *
81392413 GATGATTCTACCGTACAAGGGTATTTCGGTAATTCTACCCTATAGTGGTATTTTA
1 G-TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
81392468 GTAATTCTACCCTACAAGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATT
81392501 TTGCAAACTG
Statistics
Matches: 398, Mismatches: 60, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
53 6 0.02
54 388 0.97
55 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:81392497 original size:27 final size:27
Alignment explanation
Indices: 81391982--81392500 Score: 582
Period size: 27 Copynumber: 19.2 Consensus size: 27
81391972 GGGTAAAATG
* * *
81391982 GTAATTTTACCCCACAAGGGTATCTTGA
1 GTAATTCTACCCTACAAGGGTAT-TTCA
*
81392010 -TAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81392036 GTAATTCTACCCTACATGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
81392063 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81392090 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * ** *
81392117 ATAATTCTACCCTACAGGGGTAAAAT-G
1 GTAATTCTACCCTACAAGGGT-ATTTCA
* * * *
81392144 GTAATTTTACCCCACAAGTGTATCTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
81392170 GATAATTCTACCCTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
81392198 GTAATTCTACACTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81392225 GTAATTCTACCTTAC-AGAGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCA
*
81392252 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
81392279 TTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
81392306 GTATTTCTACCCTACAAAGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
81392333 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
81392360 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81392387 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
81392413 GATGATTCTACCGTACAAGGGTATTTCG
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
81392441 GTAATTCTACCCTA-TAGTGGTATTTTA
1 GTAATTCTACCCTACAAG-GGTATTTCA
81392468 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
81392495 GTAATT
1 GTAATT
81392501 TTGCAAACTG
Statistics
Matches: 413, Mismatches: 67, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
26 11 0.03
27 395 0.96
28 7 0.02
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:81392517 original size:27 final size:27
Alignment explanation
Indices: 81392484--81392717 Score: 185
Period size: 27 Copynumber: 8.7 Consensus size: 27
81392474 CTACCCTACA
*
81392484 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* **
81392511 AGAGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
81392538 AGGGTATTTC-GATAATTTTATAAACCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* * *
81392565 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
81392592 AGTGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
81392619 AGGGTATTTCAATAATTTTAC-AATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
81392645 ACGGTATTTCGGTAATTTTATAAACCTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* * *
81392673 -GGGTACTTT-GGTAATTTTACAACTAG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* *
81392699 -GGGTATTTAAATAATTTTA
1 AGGGTATTTCAGTAATTTTA
81392718 GTAAACTAAA
Statistics
Matches: 166, Mismatches: 32, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
25 3 0.02
26 39 0.23
27 116 0.70
28 8 0.05
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:81392542 original size:54 final size:54
Alignment explanation
Indices: 81392484--81392717 Score: 228
Period size: 54 Copynumber: 4.4 Consensus size: 54
81392474 CTACCCTACA
* * *
81392484 AGGGTATTTCAGTAATTTTGCAAACTGAGAGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAACTGAGGGTACTTTGGTAATTTTACAAATCG
* * * *
81392538 AGGGTATTTC-GATAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTCAG-TAATTTTACAAACTGAGGGTACTTTGGTAATTTTACAAATCG
* ** *
81392592 AGTGTATTTCAGTAATTTTACAAA-TCGAGGGTA-TTTCAATAATTTTAC-AATCA
1 AGGGTATTTCAGTAATTTTACAAACT-GAGGGTACTTT-GGTAATTTTACAAATCG
* * * * *
81392645 ACGGTATTTCGGTAATTTTATAAACCTG-GGGTACTTTGGTAATTTTACAACTAG
1 AGGGTATTTCAGTAATTTTACAAA-CTGAGGGTACTTTGGTAATTTTACAAATCG
* *
81392699 -GGGTATTTAAATAATTTTA
1 AGGGTATTTCAGTAATTTTA
81392718 GTAAACTAAA
Statistics
Matches: 144, Mismatches: 28, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
53 56 0.39
54 86 0.60
55 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTGAGGGTACTTTGGTAATTTTACAAATCG
Found at i:81392554 original size:81 final size:81
Alignment explanation
Indices: 81392480--81392717 Score: 245
Period size: 81 Copynumber: 3.0 Consensus size: 81
81392470 AATTCTACCC
* *
81392480 TACAAGGGTATTTCAGTAATTTTGCAAACTGAGAGTATTTTGGTAATTTTACAAATCGAGGGTAT
1 TACAAGGGTATTTCGGTAATTTTACAAACTGAGAGTATTTTGGTAATTTTACAAATCGAGGGTAT
* *
81392545 TTCGATAATTTTATAA
66 TTCAATAATTTTACAA
** * * **
81392561 -ACCGGGGGTACTTT-GGTAATTTTAC-AAGTCGAGTGTATTTCAGTAATTTTACAAATCGAGGG
1 TA-CAAGGGTA-TTTCGGTAATTTTACAAACT-GAGAGTATTTTGGTAATTTTACAAATCGAGGG
81392623 TATTTCAATAATTTTACAA
63 TATTTCAATAATTTTACAA
* * * * * *
81392642 T-CAACGGTATTTCGGTAATTTTATAAACCTG-GGGTACTTTGGTAATTTTACAACTAG-GGGTA
1 TACAAGGGTATTTCGGTAATTTTACAAA-CTGAGAGTATTTTGGTAATTTTACAAATCGAGGGTA
*
81392704 TTTAAATAATTTTA
65 TTTCAATAATTTTA
81392718 GTAAACTAAA
Statistics
Matches: 128, Mismatches: 22, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
79 21 0.16
80 39 0.30
81 64 0.50
82 4 0.03
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (81 bp):
TACAAGGGTATTTCGGTAATTTTACAAACTGAGAGTATTTTGGTAATTTTACAAATCGAGGGTAT
TTCAATAATTTTACAA
Found at i:81396146 original size:108 final size:110
Alignment explanation
Indices: 81395993--81396193 Score: 284
Period size: 108 Copynumber: 1.8 Consensus size: 110
81395983 ATCCTTTTGA
* * *
81395993 AACTTACCATTGCCATGTCTTGACATGGTCTTACATCGTAGCCTTGCCTTATGA-A-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGATCATACATCGTAGCCTTGCCTTA-GAGACCTCACCAA
*
81396056 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTACCTTATAGT
65 TTGCCATGCCTTGGCATGGCCTTACATGGGACCTTTACCTTATAGT
* ** *
81396101 AACTTATCAATGCCATGTCTTGACATGATCATACAT-GATTTCCTTGCCTTAGAGACCTTACCAA
1 AACTTACCAATGCCATGTCTTGACATGATCATACATCG-TAGCCTTGCCTTAGAGACCTCACCAA
81396165 TTGCCATGCCTTGGCATGGCCTTACATGG
65 TTGCCATGCCTTGGCATGGCCTTACATGG
81396194 TATCCTTGAA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
107 3 0.04
108 44 0.54
109 7 0.09
110 27 0.33
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGATCATACATCGTAGCCTTGCCTTAGAGACCTCACCAAT
TGCCATGCCTTGGCATGGCCTTACATGGGACCTTTACCTTATAGT
Found at i:81396151 original size:55 final size:53
Alignment explanation
Indices: 81395993--81396201 Score: 186
Period size: 55 Copynumber: 3.8 Consensus size: 53
81395983 ATCCTTTTGA
* * *
81395993 AACTTACCATTGCCATGTCTTGACATGGTCTTACATCGTAGCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTAACCTTGCCTTATAG
* * ** *
81396046 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTACCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGTAACC-TTGCCTTATAG
* * * * ** *
81396100 TAACTTATCAATGCCATGTCTTGACATGATCATACATGATTTCCTTGCCTTAGAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-TAACCTTGCCTTATAG
* * * *
81396155 ACCTTACCAATTGCCATGCCTTGGCATGGCCTTACATGGTATCCTTG
1 AACTTACCAA-TGCCATGCCTTGACATGGTCTTACAT-GTAACCTTG
81396202 AACCCTAATG
Statistics
Matches: 123, Mismatches: 27, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
52 3 0.02
53 40 0.33
54 9 0.07
55 68 0.55
56 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.33
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGTAACCTTGCCTTATAG
Found at i:81403007 original size:53 final size:52
Alignment explanation
Indices: 81402860--81403114 Score: 207
Period size: 53 Copynumber: 4.8 Consensus size: 52
81402850 ACGCGAGTAC
* * * * * *
81402860 CTTACCATTACCATGACTTGTCATGGTCTTACGTGGTA---T-CCTTTTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATG-AA
* * * *
81402909 CTTACCATTGCCATGTCTTGACATTGTCTTACATCGTAGCCTTGCCTTATGAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATGAA
* * * *
81402962 GTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-G-AA
* * * *
81403017 CTTATCAATGCCATGTCTTGACATGGTCTTAC-TGATTTCCTTGCCTTA-GAGA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATGA-A
*
81403069 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTG
81403115 AACCCTATGT
Statistics
Matches: 164, Mismatches: 28, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
49 32 0.20
51 1 0.01
52 4 0.02
53 49 0.30
54 40 0.24
55 38 0.23
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (52 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAA
Found at i:81403077 original size:108 final size:109
Alignment explanation
Indices: 81402907--81403106 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 109
81402897 ATCCTTTTGA
* * *
81402907 AACTTACCATTGCCATGTCTTGACATTGTCTTACATCGTAGCCTTGCCTTATGAAGTCACCAA-T
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATCGTAGCCTTGCCTTATGAACTCACCAATT
81402971 GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
81403015 AACTTATCAATGCCATGTCTTGACATGGTCTTAC-T-GATTTCCTTGCCTTA-GAGACCTTACCA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATCG-TAGCCTTGCCTTATGA-A-CTCACCA
81403077 ATTGCCATGCCTTGGCATGGTCTTACATGG
63 ATTGCCATGCCTTGGCATGGTCTTACATGG
81403107 TATCCTTGAA
Statistics
Matches: 81, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
106 3 0.04
107 13 0.16
108 37 0.46
109 28 0.35
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATCGTAGCCTTGCCTTATGAACTCACCAATT
GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:81403498 original size:30 final size:30
Alignment explanation
Indices: 81403450--81403508 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
81403440 TCCTTGACCC
*
81403450 AAACTTTTGCAAAATTACA-TTTTTGCCCCT
1 AAACTTTTACAAAATTACACTTTTT-CCCCT
* *
81403480 AAACTTTTACATATTTACACTTTTTCCCC
1 AAACTTTTACAAAATTACACTTTTTCCCC
81403509 AAGGCTCGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.29, C:0.25, G:0.03, T:0.42
Consensus pattern (30 bp):
AAACTTTTACAAAATTACACTTTTTCCCCT
Found at i:81412030 original size:14 final size:13
Alignment explanation
Indices: 81411999--81412035 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
81411989 ATGTTTAAAA
81411999 ACTTTTATTTTTT
1 ACTTTTATTTTTT
81412012 A-TTTTATGTTTTT
1 ACTTTTAT-TTTTT
81412025 ACTTTTATTTT
1 ACTTTTATTTT
81412036 ATTTTAAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.27
13 10 0.45
14 6 0.27
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (13 bp):
ACTTTTATTTTTT
Found at i:81416945 original size:16 final size:16
Alignment explanation
Indices: 81416924--81416956 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
81416914 ACGAAAATAC
81416924 ATTTTCAAATGTCAGA
1 ATTTTCAAATGTCAGA
*
81416940 ATTTTCAAATGTTAGA
1 ATTTTCAAATGTCAGA
81416956 A
1 A
81416957 GTCATCACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (16 bp):
ATTTTCAAATGTCAGA
Found at i:81419007 original size:26 final size:26
Alignment explanation
Indices: 81418971--81419022 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
81418961 TCACATATCG
*
81418971 ATGCCACTGTCCCAGACAGGGTCTTA
1 ATGCCAATGTCCCAGACAGGGTCTTA
*
81418997 ATGCCAATGTCCCAGACATGGTCTTA
1 ATGCCAATGTCCCAGACAGGGTCTTA
81419023 CACGTAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (26 bp):
ATGCCAATGTCCCAGACAGGGTCTTA
Found at i:81419094 original size:69 final size:69
Alignment explanation
Indices: 81419021--81419160 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
81419011 GACATGGTCT
*
81419021 TACACGTAATCACATATCAATGCCAATGTCCCAGACGTGGTCTTACTTGAGAACACATATCGAAA
1 TACACGTAATCACATATCAATGCCAATGTCCCAGACGTGGTCTTACTCGAGAACACATATCGAAA
81419086 ATCC
66 ATCC
*
81419090 TACACGTAATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACTCGAGAACACATATCGAAA
1 TACACGTAATCACATATCAATGCCAATGTCCCAGACGTGGTCTTACTCGAGAACACATATCGAAA
81419155 ATCC
66 ATCC
81419159 TA
1 TA
81419161 TGTCATGACA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (69 bp):
TACACGTAATCACATATCAATGCCAATGTCCCAGACGTGGTCTTACTCGAGAACACATATCGAAA
ATCC
Found at i:81421678 original size:29 final size:29
Alignment explanation
Indices: 81421646--81421723 Score: 90
Period size: 28 Copynumber: 2.7 Consensus size: 29
81421636 TAAAGGTGAT
81421646 TTGGGCCTAATGGGCCATATGAATATGA-A
1 TTGGGCCTAATGGGCCATATGAA-ATGAGA
* *
81421675 TTGGGCCTGATAGGCCATAT-AAATGAGA
1 TTGGGCCTAATGGGCCATATGAAATGAGA
*
81421703 TTGGGCC-AAGTGGGCTATATG
1 TTGGGCCTAA-TGGGCCATATG
81421724 CATGTATGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
27 5 0.12
28 18 0.44
29 18 0.44
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAAATGAGA
Found at i:81422078 original size:15 final size:15
Alignment explanation
Indices: 81422060--81422088 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
81422050 GTGTTATGGA
81422060 TGTTGCATGCATATC
1 TGTTGCATGCATATC
81422075 TGTTGCATGCATAT
1 TGTTGCATGCATAT
81422089 GATATTCTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (15 bp):
TGTTGCATGCATATC
Found at i:81428747 original size:29 final size:29
Alignment explanation
Indices: 81428705--81428791 Score: 158
Period size: 29 Copynumber: 3.0 Consensus size: 29
81428695 GTGAGCATGA
81428705 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
81428733 ATATAAAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
*
81428762 ATATAAAGGTGATTTGGGCCTAATGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
81428791 A
1 A
81428792 ATGAATATGA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
28 4 0.07
29 53 0.93
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAACGGGCC
Found at i:81428823 original size:57 final size:58
Alignment explanation
Indices: 81428704--81428850 Score: 167
Period size: 57 Copynumber: 2.6 Consensus size: 58
81428694 TGTGAGCATG
* * *
81428704 AATAT-AAGGTGATTTGGGCCTAACGGGCCATATAAAGGTGATTTGGGCCTAACGGGC
1 AATATAAAGGTGATTTGGGCCTAATGGGCCATATAAAGATGAATTGGGCCTAACGGGC
* * * * *
81428761 CATATAAAGGTGATTTGGGCCTAATGGGCCA-ATGAATATGAATTGGGCCTGATGGGC
1 AATATAAAGGTGATTTGGGCCTAATGGGCCATATAAAGATGAATTGGGCCTAACGGGC
* *
81428818 AATATAAATGAGA-TTGGGCC-AAGTGGGCCATAT
1 AATATAAAGGTGATTTGGGCCTAA-TGGGCCATAT
81428851 GCATGTATGT
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
55 2 0.03
56 14 0.18
57 36 0.47
58 24 0.32
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.25
Consensus pattern (58 bp):
AATATAAAGGTGATTTGGGCCTAATGGGCCATATAAAGATGAATTGGGCCTAACGGGC
Found at i:81428833 original size:28 final size:29
Alignment explanation
Indices: 81428704--81428837 Score: 116
Period size: 29 Copynumber: 4.7 Consensus size: 29
81428694 TGTGAGCATG
*
81428704 AATAT-AAGGTGATTTGGGCCTAACGGGC
1 AATATAAAGGAGATTTGGGCCTAACGGGC
* *
81428732 CATATAAAGGTGATTTGGGCCTAACGGGC
1 AATATAAAGGAGATTTGGGCCTAACGGGC
* * *
81428761 CATATAAAGGTGATTTGGGCCTAATGGGCC
1 AATATAAAGGAGATTTGGGCCTAACGGG-C
* * * *
81428791 AATGA-ATATGA-A-TTGGGCCTGATGGGC
1 AAT-ATAAAGGAGATTTGGGCCTAACGGGC
*
81428818 AATATAAATGAGA-TTGGGCC
1 AATATAAAGGAGATTTGGGCC
81428838 AAGTGGGCCA
Statistics
Matches: 93, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.01
27 9 0.10
28 25 0.27
29 51 0.55
30 6 0.06
31 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.25
Consensus pattern (29 bp):
AATATAAAGGAGATTTGGGCCTAACGGGC
Found at i:81431325 original size:17 final size:18
Alignment explanation
Indices: 81431303--81431344 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
81431293 TATCAGAACT
81431303 AGAATCAAAATAAG-ATC
1 AGAATCAAAATAAGAATC
*
81431320 AGAATCAAAATCAGAATC
1 AGAATCAAAATAAGAATC
*
81431338 TGAATCA
1 AGAATCA
81431345 GGTGACAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.55, C:0.14, G:0.12, T:0.19
Consensus pattern (18 bp):
AGAATCAAAATAAGAATC
Found at i:81431342 original size:6 final size:6
Alignment explanation
Indices: 81431294--81431466 Score: 99
Period size: 6 Copynumber: 28.3 Consensus size: 6
81431284 AAGAAACATT
* * * *
81431294 ATCAGA A-CTAGA ATCAAA ATAAG- ATCAGA ATCAAA ATCAGA ATCTGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
81431341 ATCAG- GTGACAGA CTCAAA ATCAGA ATCAGA ATCAGA A-CTAGGTA A-CATA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATC-A-G-A ATCAGA
* *
81431391 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* *
81431440 ATTAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
81431467 GTGAATGCAA
Statistics
Matches: 128, Mismatches: 23, Indels: 32
0.70 0.13 0.17
Matches are distributed among these distances:
5 13 0.10
6 97 0.76
7 11 0.09
8 7 0.05
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:81431393 original size:25 final size:26
Alignment explanation
Indices: 81431362--81431429 Score: 104
Period size: 25 Copynumber: 2.7 Consensus size: 26
81431352 GACTCAAAAT
81431362 CAGAATCAGAATCAGAACT-AGGTAA
1 CAGAATCAGAATCAGAACTCAGGTAA
* *
81431387 CATAATCAGAATCAGTA-TCAGGTAA
1 CAGAATCAGAATCAGAACTCAGGTAA
81431412 CAGAATCAGAATCAGAAC
1 CAGAATCAGAATCAGAAC
81431430 CAGAATCAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (26 bp):
CAGAATCAGAATCAGAACTCAGGTAA
Found at i:81431394 original size:31 final size:31
Alignment explanation
Indices: 81431359--81431466 Score: 123
Period size: 31 Copynumber: 3.5 Consensus size: 31
81431349 ACAGACTCAA
*
81431359 AATCAGAATCAGAATCAGAACTAGGTAACAT
1 AATCAGAATCAGAATCAGAACTAGGTAACAG
*
81431390 AATCAGAATCAGTATCAGGTAAC-A-G-AATCAG
1 AATCAGAATCAGAATCA-G-AACTAGGTAA-CAG
* *
81431421 AATCAGAACCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGAACTAGGTAACAG
*
81431452 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
81431467 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
29 2 0.03
30 4 0.06
31 51 0.80
32 4 0.06
33 3 0.05
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAACTAGGTAACAG
Found at i:81431400 original size:37 final size:37
Alignment explanation
Indices: 81431317--81431441 Score: 114
Period size: 37 Copynumber: 3.4 Consensus size: 37
81431307 TCAAAATAAG
* * *
81431317 ATCAGAATCAAAATCAGAATCTGAATCAGGTGACAGA
1 ATCAGAATCAGAATCAGAATCAGAATCAGGTAACAGA
* * *
81431354 CTCAAAATCAGAATCAGAATCAGAA-CTAGGTAACATA
1 ATCAGAATCAGAATCAGAATCAGAATC-AGGTAACAGA
*
81431391 ATCAGAATCAGTATCAGGTAA-CAGAATCA-G-AATCAGA
1 ATCAGAATCAGAATCA-G-AATCAGAATCAGGTAA-CAGA
*
81431428 ACCAGAATCAGAAT
1 ATCAGAATCAGAAT
81431442 TAGGTAACAG
Statistics
Matches: 71, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
36 3 0.04
37 58 0.82
38 7 0.10
39 3 0.04
ACGTcount: A:0.47, C:0.18, G:0.17, T:0.18
Consensus pattern (37 bp):
ATCAGAATCAGAATCAGAATCAGAATCAGGTAACAGA
Found at i:81431407 original size:62 final size:62
Alignment explanation
Indices: 81431328--81431466 Score: 197
Period size: 62 Copynumber: 2.2 Consensus size: 62
81431318 TCAGAATCAA
* * * * *
81431328 AATCAGAATCTGAATCAGGTGACAGACTCAAAATCAGAATCAGAATCAGAACTAGGTAACAT
1 AATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAACTAGGTAACAG
* * *
81431390 AATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAACTAGGTAACAG
*
81431452 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
81431467 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (62 bp):
AATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAACTAGGTAACAG
Found at i:81431415 original size:19 final size:19
Alignment explanation
Indices: 81431393--81431463 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
81431383 GTAACATAAT
*
81431393 CAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGGTAA
81431412 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
81431429 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
*
81431449 CAGAATCAAAATCAG
1 CAGAATCAGAATCAG
81431464 AATGTGAATG
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
17 2 0.04
18 14 0.31
19 27 0.60
20 2 0.04
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:81431447 original size:37 final size:37
Alignment explanation
Indices: 81431393--81431465 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
81431383 GTAACATAAT
* *
81431393 CAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
1 CAGAATCAGAATCAGGTAACAGAATCAAAATCAGAAC
*
81431430 CAGAATCAGAATTAGGTAACAGAATCAAAATCAGAA
1 CAGAATCAGAATCAGGTAACAGAATCAAAATCAGAA
81431466 TGTGAATGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.16
Consensus pattern (37 bp):
CAGAATCAGAATCAGGTAACAGAATCAAAATCAGAAC
Found at i:81432051 original size:27 final size:27
Alignment explanation
Indices: 81432005--81432178 Score: 188
Period size: 27 Copynumber: 6.4 Consensus size: 27
81431995 TTTACCATAA
* *
81432005 AAGGGTATCTCGGTAATTCTACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
**
81432032 -AGGGTTATTTTAGTATTTCTACCCTAC
1 AAGGG-TATTTCGGTATTTCTACCCTAC
* * *
81432059 AAGAGTATTTCGGTAATTCTACCCTAT
1 AAGGGTATTTCGGTATTTCTACCCTAC
* ** *
81432086 AGGGGTATTTTAGTAATTCTACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
* * **
81432113 AGGGGTATTTCGGTGTTTCTAAACTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
*
81432140 AAGGGTATTTCGGTATTCCTACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
81432167 AAGGGTATTTCG
1 AAGGGTATTTCG
81432179 ATAATTTTGT
Statistics
Matches: 120, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
26 4 0.03
27 113 0.94
28 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
AAGGGTATTTCGGTATTTCTACCCTAC
Found at i:81432096 original size:54 final size:54
Alignment explanation
Indices: 81432005--81432184 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 54
81431995 TTTACCATAA
* *
81432005 AAGGGTATCTCGGTAATTCTACCCTACAGGGTTATTTTAGTATTTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTATTTCTACCCTAC
* * *
81432059 AAGAGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTATTTCTACCCTAC
* ** ** * ** *
81432113 AGGGGTATTTCGGTGTTTCTAAACTACAAGGGTATTTCGGTATTCCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTATTTCTACCCTAC
*
81432167 AAGGGTATTTCGATAATT
1 AAGGGTATTTCGGTAATT
81432185 TTGTAAATTG
Statistics
Matches: 105, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 105 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTATTTCTACCCTAC
Found at i:81432184 original size:81 final size:81
Alignment explanation
Indices: 81431989--81432184 Score: 225
Period size: 81 Copynumber: 2.4 Consensus size: 81
81431979 GAGGTAAAAT
* * * * * * * *
81431989 GGTAATTTTACCATAAAAGGGTATCTCGGTAATTCTACCCTACAGGGTTATTTTAGTATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTATTTCTAA
*
81432054 CCTACAAGAGTATTTC
66 ACTACAAGAGTATTTC
* * * * *
81432070 GGTAATTCTACCCTATAGGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTTCGGTGTTTCTA
1 GGTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCAGTATTTCTA
*
81432134 AACTACAAGGGTATTTC
65 AACTACAAGAGTATTTC
81432151 GGT-ATTCCTACCCTACAAGGGTATTTCGATAATT
1 GGTAATT-CTACCCTACAAGGGTATTTCGATAATT
81432185 TTGTAAATTG
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
80 3 0.03
81 91 0.96
82 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTATTTCTAA
ACTACAAGAGTATTTC
Found at i:81432257 original size:18 final size:18
Alignment explanation
Indices: 81432236--81432277 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
81432226 TACTTTGGTA
*
81432236 ATTTTACAAGTCGAGGGT
1 ATTTTACAAGTCAAGGGT
81432254 ATTTTACAAGTCAAGGGT
1 ATTTTACAAGTCAAGGGT
81432272 ATTTTA
1 ATTTTA
81432278 GTAATTTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (18 bp):
ATTTTACAAGTCAAGGGT
Found at i:81432426 original size:27 final size:27
Alignment explanation
Indices: 81432254--81432419 Score: 242
Period size: 27 Copynumber: 6.1 Consensus size: 27
81432244 AGTCGAGGGT
** * *
81432254 ATTTTACAAGTCAAGGGTATTTTAGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
* *
81432281 ATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
81432308 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
81432335 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
** *
81432362 ATTTTGTAAACCAAGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
*
81432389 ATTTTAAAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
81432416 ATTT
1 ATTT
81432420 GGTAAACTAA
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
ATTTTACAAACCAGGGGTATTTTGGTA
Found at i:81434346 original size:12 final size:12
Alignment explanation
Indices: 81434329--81434402 Score: 96
Period size: 12 Copynumber: 6.2 Consensus size: 12
81434319 AAGAAACATT
81434329 ATCAAAA-CTAGA
1 ATCAAAATC-AGA
*
81434341 ATCAAAATGAGA
1 ATCAAAATCAGA
*
81434353 ATCAGAATCAGA
1 ATCAAAATCAGA
81434365 ATCAAAATCAGA
1 ATCAAAATCAGA
*
81434377 ATCAAAATCAAA
1 ATCAAAATCAGA
*
81434389 ATCAGAATCAGA
1 ATCAAAATCAGA
81434401 AT
1 AT
81434403 TAGGTAACAG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
12 54 1.00
ACGTcount: A:0.57, C:0.15, G:0.11, T:0.18
Consensus pattern (12 bp):
ATCAAAATCAGA
Found at i:81434359 original size:18 final size:18
Alignment explanation
Indices: 81434329--81434398 Score: 97
Period size: 18 Copynumber: 3.9 Consensus size: 18
81434319 AAGAAACATT
81434329 ATCAAAA-CTAGAATCAAA
1 ATCAAAATC-AGAATCAAA
* * *
81434347 ATGAGAATCAGAATCAGA
1 ATCAAAATCAGAATCAAA
81434365 ATCAAAATCAGAATCAAA
1 ATCAAAATCAGAATCAAA
81434383 ATCAAAATCAGAATCA
1 ATCAAAATCAGAATCA
81434399 GAATTAGGTA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
18 44 0.98
19 1 0.02
ACGTcount: A:0.57, C:0.16, G:0.10, T:0.17
Consensus pattern (18 bp):
ATCAAAATCAGAATCAAA
Found at i:81434361 original size:6 final size:6
Alignment explanation
Indices: 81434338--81434514 Score: 130
Period size: 6 Copynumber: 28.8 Consensus size: 6
81434328 TATCAAAACT
* * * *
81434338 AGAATC AAAATG AGAATC AGAATC AGAATC AAAATC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
* * *
81434386 AAAATC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC
* *
81434436 AGAATC AGAATC AGAACC AGAATA AGAAAT- AGGTAA-C AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC A-G-AATC AGAATC AGAATC
* * *
81434485 AGTATC AGGTAA-C AGAATC AAAACC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
81434515 GTGAATACAA
Statistics
Matches: 136, Mismatches: 22, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
5 8 0.06
6 109 0.80
7 15 0.11
8 4 0.03
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:81434415 original size:19 final size:19
Alignment explanation
Indices: 81434391--81434483 Score: 82
Period size: 19 Copynumber: 4.6 Consensus size: 19
81434381 AAATCAAAAT
81434391 CAGAATCAGAATTAGGTAA
1 CAGAATCAGAATTAGGTAA
81434410 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG-A--A-T-T-AGGTAA
*
81434435 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATTAGGTAA
* *
81434452 CCAGAATAAGAAATAGGTAA
1 -CAGAATCAGAATTAGGTAA
81434472 CAGAATCAGAAT
1 CAGAATCAGAAT
81434484 CAGTATCAGG
Statistics
Matches: 59, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
17 2 0.03
18 12 0.20
19 21 0.36
20 3 0.05
21 1 0.02
22 2 0.03
23 1 0.02
24 2 0.03
25 15 0.25
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATTAGGTAA
Found at i:81434451 original size:37 final size:37
Alignment explanation
Indices: 81434410--81434492 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
81434400 AATTAGGTAA
* * **
81434410 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAGAATAAGAAATAGGTAACAGAATCAGAAT
*
81434447 CAGAACCAGAATAAGAAATAGGTAACAGAATCAGAAT
1 CAGAATCAGAATAAGAAATAGGTAACAGAATCAGAAT
*
81434484 CAGTATCAG
1 CAGAATCAG
81434493 GTAACAGAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (37 bp):
CAGAATCAGAATAAGAAATAGGTAACAGAATCAGAAT
Found at i:81434475 original size:25 final size:25
Alignment explanation
Indices: 81434447--81434501 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
81434437 GAATCAGAAT
81434447 CAGAACCAGAATAAGAAAT-AGGTAA
1 CAGAACCAGAATAAG-AATCAGGTAA
* * *
81434472 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAACCAGAATAAGAATCAGGTAA
81434497 CAGAA
1 CAGAA
81434502 TCAAAACCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.51, C:0.15, G:0.20, T:0.15
Consensus pattern (25 bp):
CAGAACCAGAATAAGAATCAGGTAA
Found at i:81434504 original size:19 final size:19
Alignment explanation
Indices: 81434416--81434486 Score: 85
Period size: 19 Copynumber: 3.8 Consensus size: 19
81434406 GTAACAGAAT
*
81434416 CAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGGTAA
81434435 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
81434452 CCAGAATAAGAAAT-AGGTAA
1 -CAGAATCAG-AATCAGGTAA
81434472 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
81434487 TATCAGGTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
17 2 0.05
18 13 0.30
19 27 0.61
20 2 0.05
ACGTcount: A:0.49, C:0.15, G:0.20, T:0.15
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:81434521 original size:62 final size:62
Alignment explanation
Indices: 81434391--81434513 Score: 210
Period size: 62 Copynumber: 2.0 Consensus size: 62
81434381 AAATCAAAAT
* * * *
81434391 CAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
1 CAGAATAAGAAATAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAAAACCAGAAC
81434453 CAGAATAAGAAATAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAAAACCAGAA
1 CAGAATAAGAAATAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAAAACCAGAA
81434514 TGTGAATACA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.50, C:0.15, G:0.19, T:0.16
Consensus pattern (62 bp):
CAGAATAAGAAATAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAAAACCAGAAC
Found at i:81434712 original size:29 final size:27
Alignment explanation
Indices: 81434635--81434713 Score: 72
Period size: 27 Copynumber: 2.9 Consensus size: 27
81434625 AGGCTGCCAG
* *
81434635 ATATTGTGACGAAGTCACCAGATACAA
1 ATATTGTGGCGAAGCCACCAGATACAA
* *
81434662 ATATTGTGGC-TAGACCAGCAGA-ACATA
1 ATATTGTGGCGAAG-CCACCAGATACA-A
81434689 TATATATGTGGCGAAGCCACCAGAT
1 -ATAT-TGTGGCGAAGCCACCAGAT
81434714 TGCAGCGAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
26 5 0.12
27 16 0.40
28 4 0.10
29 13 0.32
30 2 0.05
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.23
Consensus pattern (27 bp):
ATATTGTGGCGAAGCCACCAGATACAA
Found at i:81435083 original size:27 final size:27
Alignment explanation
Indices: 81435028--81435265 Score: 237
Period size: 27 Copynumber: 8.9 Consensus size: 27
81435018 TAAAATGGTA
* * * *
81435028 ATTT-TACCCCACAAGGGTATCTCAAT
1 ATTTCTACCCTACAGGGGTATTTCAGT
* * *
81435054 AATTCTACCCTACAGGGGTATTTTATT
1 ATTTCTACCCTACAGGGGTATTTCAGT
* * *
81435081 AATTCTACCTTACAGGGGTATTTCAGC
1 ATTTCTACCCTACAGGGGTATTTCAGT
* * * **
81435108 ATTTCAATCCTACAAGGGTATTTTGGT
1 ATTTCTACCCTACAGGGGTATTTCAGT
* *
81435135 AATTT-TACCCTACAGCGGTATTTTAGT
1 -ATTTCTACCCTACAGGGGTATTTCAGT
*
81435162 ATTTTTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAGGGGTATTTCAGT
* *
81435189 ATTTCTACCCAACAGGGGTATTTCGGT
1 ATTTCTACCCTACAGGGGTATTTCAGT
* *
81435216 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAGGGGTATTTCAGT
* *
81435243 ATTTCTAACCTACAAGGGTATTT
1 ATTTCTACCCTACAGGGGTATTT
81435266 TGGTAATTTT
Statistics
Matches: 178, Mismatches: 31, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
26 7 0.04
27 167 0.94
28 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
ATTTCTACCCTACAGGGGTATTTCAGT
Found at i:81435289 original size:27 final size:27
Alignment explanation
Indices: 81435255--81435570 Score: 278
Period size: 27 Copynumber: 11.7 Consensus size: 27
81435245 TTCTAACCTA
**
81435255 CAAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **** * *
81435282 CGATGGTAAAACGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
81435309 CAGGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** **
81435336 CGAGGGTATTTTAAAAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * *
81435363 TGAGGGTATTTTAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
81435390 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
81435416 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * *
81435443 CTAGGGGTATTTTGGTAATTTTATAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*
81435471 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
81435498 CAGGGGTATTTT-GTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
81435524 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
81435551 CAAGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
81435571 GGTAAACTAA
Statistics
Matches: 240, Mismatches: 46, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
26 24 0.10
27 215 0.90
28 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:81435577 original size:27 final size:27
Alignment explanation
Indices: 81435365--81435570 Score: 288
Period size: 27 Copynumber: 7.7 Consensus size: 27
81435355 TTACAGGTTG
* * *
81435365 AGGGTATTTTAGTAATTTCACAAATCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
81435392 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
81435419 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
81435446 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
81435473 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
81435500 GGGGTATTTT-GTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
81435526 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
81435553 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
81435571 GGTAAACTAA
Statistics
Matches: 162, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 23 0.14
27 139 0.86
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:81444366 original size:15 final size:16
Alignment explanation
Indices: 81444346--81444378 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
81444336 TTAAATGGGT
81444346 ATTAAAATAT-AATTA
1 ATTAAAATATGAATTA
*
81444361 ATTAAATTATGAATTA
1 ATTAAAATATGAATTA
81444377 AT
1 AT
81444379 ACACATTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
ATTAAAATATGAATTA
Found at i:81448241 original size:24 final size:24
Alignment explanation
Indices: 81448214--81448291 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
81448204 AAGGCTGTCA
*
81448214 GGAGAAGATTTGGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
81448238 GGAGAGGATTTAAGATCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
81448262 GGAGAGGATTTAGGAGCTAATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
81448286 GGAGAA
1 GGAGAA
81448292 CGGTGTTGGC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.22
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:81449763 original size:27 final size:27
Alignment explanation
Indices: 81449723--81449793 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
81449713 AGGAAGCATC
* *
81449723 CTGGTGGCTATGCCACATTTATCAGAT
1 CTGGTGGCTCTGCCACATATATCAGAT
* *
81449750 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCAGAT
81449777 CTGGTGGCTCTGCCACA
1 CTGGTGGCTCTGCCACA
81449794 ATTACCTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.17, C:0.27, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCAGAT
Found at i:81449807 original size:27 final size:28
Alignment explanation
Indices: 81449723--81449820 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 28
81449713 AGGAAGCATC
* * * * *
81449723 CTGGTGGCTATGCCAC-ATTTATCAGAT
1 CTGGTGGCTCTGCCACAATATACCTGTT
*
81449750 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAATATACCTGTT
81449777 CTGGTGGCTCTGCCACAAT-TACCT-TT
1 CTGGTGGCTCTGCCACAATATACCTGTT
* *
81449803 ACTGGTGACTCTGTCACA
1 -CTGGTGGCTCTGCCACA
81449821 TTATCTGTTC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.03
27 58 0.94
28 2 0.03
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.34
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATATACCTGTT
Found at i:81456115 original size:24 final size:24
Alignment explanation
Indices: 81456088--81456165 Score: 120
Period size: 24 Copynumber: 3.2 Consensus size: 24
81456078 AAGGCTGTCA
*
81456088 GGAGAAGATTTGGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
81456112 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
81456136 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
81456160 GGAGAA
1 GGAGAA
81456166 CGGTGTTGGC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.33, C:0.04, G:0.42, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:81457176 original size:16 final size:15
Alignment explanation
Indices: 81457150--81457181 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
81457140 ACTAGATCGG
81457150 CAAAAGCCGAAAAGT
1 CAAAAGCCGAAAAGT
81457165 CAAAATGCCGAAAAGT
1 CAAAA-GCCGAAAAGT
81457181 C
1 C
81457182 GGTATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.22, G:0.19, T:0.09
Consensus pattern (15 bp):
CAAAAGCCGAAAAGT
Found at i:81457637 original size:27 final size:27
Alignment explanation
Indices: 81457597--81457674 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
81457587 AGGAAGCGTC
*
81457597 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGAT
* * * *
81457624 CTGGTAGCTCTGCCATATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGAT
*
81457651 CTGGTGGCTCTGCCACAATTATCT
1 CTGGTGGCTCTGCCACATTTATCT
81457675 ATTTTGGTGA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGAT
Found at i:81457682 original size:27 final size:27
Alignment explanation
Indices: 81457597--81457707 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
81457587 AGGAAGCGTC
* *
81457597 CTGGTGGCTATGCCACATTTATCTGA-T
1 CTGGTGGCTCTGCCACAATTATCT-ATT
* * *
81457624 CTGGTAGCTCTGCCA-TATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTATT
81457651 CTGGTGGCTCTGCCACAATTATCTATT
1 CTGGTGGCTCTGCCACAATTATCTATT
* * * * *
81457678 TTGGTGACTTTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTATT
81457704 CTGG
1 CTGG
81457708 CAGCCATGCT
Statistics
Matches: 67, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
26 13 0.19
27 52 0.78
28 2 0.03
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.41
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTATT
Found at i:81460204 original size:49 final size:49
Alignment explanation
Indices: 81460131--81460262 Score: 189
Period size: 49 Copynumber: 2.7 Consensus size: 49
81460121 CTTATTGTGT
81460131 GTCAGTGTAAGAC-TGTCTGGGACATGGCATCGACAC-CAATAGATGAAA
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGAC-CTCAATAGATGAAA
* * *
81460179 -TCCAGTGTAAGACTTGTCTGGGACATGGCATCGGCCTCGATATATGAAA
1 GT-CAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCAATAGATGAAA
*
81460228 GTTAGTGTAAGACTTGTCTGGGACATGGCATCGAC
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGAC
81460263 TTTGGTGTGT
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 12 0.16
49 61 0.81
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCAATAGATGAAA
Done.