Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 256 of 325
Found at i:81462075 original size:49 final size:49
Alignment explanation
Indices: 81462002--81462133 Score: 189
Period size: 49 Copynumber: 2.7 Consensus size: 49
81461992 CTTATTGTGT
81462002 GTCAGTGTAAGAC-TGTCTGGGACATGGCATCGACAC-CAATAGATGAAA
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGAC-CTCAATAGATGAAA
* * *
81462050 -TCCAGTGTAAGACTTGTCTGGGACATGGCATCGGCCTCGATATATGAAA
1 GT-CAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCAATAGATGAAA
*
81462099 GTTAGTGTAAGACTTGTCTGGGACATGGCATCGAC
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGAC
81462134 TTTGGTGTGT
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 12 0.16
49 61 0.81
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCAATAGATGAAA
Found at i:81464776 original size:26 final size:26
Alignment explanation
Indices: 81464747--81464796 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
81464737 CAAAATTAGT
81464747 TAAAGTGTATGTCACCAATTTTGAGG
1 TAAAGTGTATGTCACCAATTTTGAGG
81464773 TAAAGTGTATGTCACCAATTTTGA
1 TAAAGTGTATGTCACCAATTTTGA
81464797 CTAGTTGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (26 bp):
TAAAGTGTATGTCACCAATTTTGAGG
Found at i:81467756 original size:22 final size:23
Alignment explanation
Indices: 81467697--81467771 Score: 107
Period size: 23 Copynumber: 3.2 Consensus size: 23
81467687 GAAAGCTGCA
*
81467697 GGAGAAGATTTGGGAGCTGATAAG
1 GGAG-AGATTTAGGAGCTGATAAG
*
81467721 GGAGGGATTTAGGAGCTGATAAG
1 GGAGAGATTTAGGAGCTGATAAG
81467744 GGAGAG-TTTAGGAGCTGATTAAG
1 GGAGAGATTTAGGAGCTGA-TAAG
81467767 GGAGA
1 GGAGA
81467772 AGGTGTGAGC
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
22 12 0.26
23 31 0.66
24 4 0.09
ACGTcount: A:0.32, C:0.04, G:0.43, T:0.21
Consensus pattern (23 bp):
GGAGAGATTTAGGAGCTGATAAG
Found at i:81481047 original size:24 final size:24
Alignment explanation
Indices: 81481020--81481097 Score: 120
Period size: 24 Copynumber: 3.2 Consensus size: 24
81481010 AAGGCTGTCA
*
81481020 GGAGAAGATTTGGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
81481044 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
81481068 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
81481092 GGAGAA
1 GGAGAA
81481098 CGGTGTTGGC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.33, C:0.04, G:0.42, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:81482107 original size:16 final size:15
Alignment explanation
Indices: 81482081--81482112 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
81482071 ACTAGATCGG
81482081 CAAAAGCCGAAAAGT
1 CAAAAGCCGAAAAGT
81482096 CAAAATGCCGAAAAGT
1 CAAAA-GCCGAAAAGT
81482112 C
1 C
81482113 GGTATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.22, G:0.19, T:0.09
Consensus pattern (15 bp):
CAAAAGCCGAAAAGT
Found at i:81482568 original size:27 final size:27
Alignment explanation
Indices: 81482528--81482605 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
81482518 AGGAAGCGTC
*
81482528 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGAT
* * * *
81482555 CTGGTAGCTCTGCCATATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGAT
*
81482582 CTGGTGGCTCTGCCACAATTATCT
1 CTGGTGGCTCTGCCACATTTATCT
81482606 ATTTTGGTGA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGAT
Found at i:81482613 original size:27 final size:27
Alignment explanation
Indices: 81482528--81482638 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
81482518 AGGAAGCGTC
* *
81482528 CTGGTGGCTATGCCACATTTATCTGA-T
1 CTGGTGGCTCTGCCACAATTATCT-ATT
* * *
81482555 CTGGTAGCTCTGCCA-TATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTATT
81482582 CTGGTGGCTCTGCCACAATTATCTATT
1 CTGGTGGCTCTGCCACAATTATCTATT
* * * * *
81482609 TTGGTGACTTTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTATT
81482635 CTGG
1 CTGG
81482639 CAGCCATGCT
Statistics
Matches: 67, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
26 13 0.19
27 52 0.78
28 2 0.03
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.41
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTATT
Found at i:81485134 original size:49 final size:49
Alignment explanation
Indices: 81485061--81485192 Score: 189
Period size: 49 Copynumber: 2.7 Consensus size: 49
81485051 CTTATTGTGT
81485061 GTCAGTGTAAGAC-TGTCTGGGACATGGCATCGACAC-CAATAGATGAAA
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGAC-CTCAATAGATGAAA
* * *
81485109 -TCCAGTGTAAGACTTGTCTGGGACATGGCATCGGCCTCGATATATGAAA
1 GT-CAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCAATAGATGAAA
*
81485158 GTTAGTGTAAGACTTGTCTGGGACATGGCATCGAC
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGAC
81485193 TTTGGTGTGT
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 12 0.16
49 61 0.81
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCAATAGATGAAA
Found at i:81487840 original size:26 final size:26
Alignment explanation
Indices: 81487811--81487860 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
81487801 CAAAATTAGT
81487811 TAAAGTGTATGTCACCAATTTTGAGG
1 TAAAGTGTATGTCACCAATTTTGAGG
81487837 TAAAGTGTATGTCACCAATTTTGA
1 TAAAGTGTATGTCACCAATTTTGA
81487861 CTAGTTGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (26 bp):
TAAAGTGTATGTCACCAATTTTGAGG
Found at i:81496167 original size:46 final size:45
Alignment explanation
Indices: 81496114--81496372 Score: 188
Period size: 46 Copynumber: 5.6 Consensus size: 45
81496104 ATTGTAGGCT
*
81496114 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-CATATGA-GAGAGCC
*
81496160 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGACGAATGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCATATGAGA-G-A-GCC
* * * * * *
81496208 AGTGTAAGA-TATGTCTGGGACATACATCGTCCT-CGGGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCATATGAGA-G--AGCC
* * * * *
81496254 AGTGTAAGA-CATGTCTGGGACATGCATCAGC-TACGAAATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCATATGAGA-GAGCC
* * *
81496298 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCATAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC----ATATGAGAGAGCC
*
81496348 AGTGTAAGACCATGTATGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
81496373 GCATTGGTAA
Statistics
Matches: 172, Mismatches: 27, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
44 11 0.06
45 17 0.10
46 63 0.37
47 33 0.19
48 18 0.10
49 1 0.01
50 25 0.15
51 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCATATGAGAGAGCC
Found at i:81498504 original size:39 final size:41
Alignment explanation
Indices: 81498429--81498511 Score: 143
Period size: 39 Copynumber: 2.0 Consensus size: 41
81498419 TATGCTGCCG
81498429 TTGTTTGAAAGGTACAAGTGTTGTTCCATTTTGCATCTATCA
1 TTGTTTGAAAGGTACAAG-GTTGTTCCATTTTGCATCTATCA
81498471 TTGTTTGAAAGGTACAA-G-TGTTCCATTTTGCATCTATCA
1 TTGTTTGAAAGGTACAAGGTTGTTCCATTTTGCATCTATCA
81498510 TT
1 TT
81498512 TATGTACTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
39 23 0.56
40 1 0.02
42 17 0.41
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.43
Consensus pattern (41 bp):
TTGTTTGAAAGGTACAAGGTTGTTCCATTTTGCATCTATCA
Found at i:81507847 original size:22 final size:23
Alignment explanation
Indices: 81507801--81507847 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
81507791 GGAAACATAG
*
81507801 TATTTAAAAAAAAGTTATGCTTT
1 TATTTAAAAAAAAGTTATGCGTT
81507824 TATTTAAAAAAAAGTTATG-GTT
1 TATTTAAAAAAAAGTTATGCGTT
81507846 TA
1 TA
81507848 GGAAAAACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.43
Consensus pattern (23 bp):
TATTTAAAAAAAAGTTATGCGTT
Found at i:81507854 original size:22 final size:23
Alignment explanation
Indices: 81507806--81507854 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
81507796 CATAGTATTT
* ***
81507806 AAAAAAAAGTTATGCTTTTATTT
1 AAAAAAAAGTTATGCGTTTAGGA
81507829 AAAAAAAAGTTATG-GTTTAGGA
1 AAAAAAAAGTTATGCGTTTAGGA
81507851 AAAA
1 AAAA
81507855 CCATGTTCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.51, C:0.02, G:0.14, T:0.33
Consensus pattern (23 bp):
AAAAAAAAGTTATGCGTTTAGGA
Found at i:81508237 original size:11 final size:11
Alignment explanation
Indices: 81508221--81508246 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81508211 CGAAGCCCAC
81508221 ATCACAATAAT
1 ATCACAATAAT
81508232 ATCACAATAAT
1 ATCACAATAAT
81508243 ATCA
1 ATCA
81508247 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:81508959 original size:28 final size:29
Alignment explanation
Indices: 81508922--81509012 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
81508912 AAGTCTACAT
*
81508922 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* * *
81508950 TCATTCATATGACCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
*
81508979 ACATTCATATGGCCCATCTA-GCCCGAATC
1 ACATTCATATGGCCCA-CTAGGCCCAAATC
81509008 A-ATTC
1 ACATTC
81509013 CAAGCCATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 24 0.45
29 27 0.51
30 2 0.04
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:81512232 original size:22 final size:22
Alignment explanation
Indices: 81512196--81512260 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
81512186 GTAAATACGT
81512196 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
* * *
81512218 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
81512240 TTGGCACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
81512261 AATAATTGGC
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:81512463 original size:41 final size:41
Alignment explanation
Indices: 81512402--81512523 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
81512392 TAAAAGCCAC
* *
81512402 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGATAGTCAAGCAACCATGCGATCCTCAAT
*
81512443 CGGTGGGTCCACGATAGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATAGTCAAGCAACCATGCGATCCTCAAT
* *
81512484 CGGTGGATCCACGGTCA-TCAAGCAACCGTGCGATCCTCAA
1 CGGTGGATCCACGAT-AGTCAAGCAACCATGCGATCCTCAA
81512524 ATTCTTCCTC
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
41 73 0.99
42 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (41 bp):
CGGTGGATCCACGATAGTCAAGCAACCATGCGATCCTCAAT
Found at i:81512815 original size:27 final size:27
Alignment explanation
Indices: 81512762--81513184 Score: 257
Period size: 27 Copynumber: 15.7 Consensus size: 27
81512752 TTTCACCCTA
* * * * *
81512762 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
** *
81512789 CAAGGGTATTTCGGTAATTTTGGAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* **
81512816 CAATGGTATTTCTATAATTTTTA-AAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-T
** **
81512844 CAAGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * ** **
81512871 TAGGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* ** *
81512898 CAGGGGTATTTCTATAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
81512925 TAAGGGTATTTC-GTAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
81512951 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
81512978 CGAA-GGTATTTCGGTAATTTTACAAGTT
1 C-AAGGGTATTTCGGTAATTTTACAA-AT
* * *
81513006 GAA-GGTATTTTGGTAATTTTACAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
81513032 TAAGGGTATTTCGATAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
81513059 -TAGAGGTATTTTGGTAATTTTAGAAA-
1 CAAG-GGTATTTCGGTAATTTTACAAAT
* * *
81513085 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTCGGTAATTTTACAAAT
* * * * * *
81513113 CATGGGTATTTTGTTCATTTTTCTAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* ** ** *
81513140 CGAGGGTATTTTTGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
81513167 CAAGGGTA-TTCAGTAATT
1 CAAGGGTATTTCGGTAATT
81513185 CTACCCTATA
Statistics
Matches: 325, Mismatches: 60, Indels: 23
0.80 0.15 0.06
Matches are distributed among these distances:
26 35 0.11
27 263 0.81
28 27 0.08
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:81513231 original size:27 final size:27
Alignment explanation
Indices: 81513175--81513250 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
81513165 ACCAAGGGTA
* *
81513175 TTCAGTAATTCTACCCTATAGAAGTAT
1 TTCAGTAATTCTACCATACAGAAGTAT
** *
81513202 TTCAGTAATTCTACCATACAGGGGTTT
1 TTCAGTAATTCTACCATACAGAAGTAT
* *
81513229 TTCAGTAATACTAGCATACAGA
1 TTCAGTAATTCTACCATACAGA
81513251 TTTGAGATTC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.34
Consensus pattern (27 bp):
TTCAGTAATTCTACCATACAGAAGTAT
Found at i:81516568 original size:28 final size:29
Alignment explanation
Indices: 81516520--81516592 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 29
81516510 AAGTCTACGT
* * *
81516520 ACATGCATATGGTCCACTAGGCCC-AATC
1 ACATTCATATGGCCCAATAGGCCCAAATC
*
81516548 TCATTCATATGGCCCAATAGGCCCAAATC
1 ACATTCATATGGCCCAATAGGCCCAAATC
81516577 ACATTCATATGGCCCA
1 ACATTCATATGGCCCA
81516593 TCCAGCCCGA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 20 0.51
29 19 0.49
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (29 bp):
ACATTCATATGGCCCAATAGGCCCAAATC
Found at i:81519533 original size:29 final size:29
Alignment explanation
Indices: 81519492--81519564 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
81519482 GAATGTGTCG
* *
81519492 AGGCCTAACGGGCCACATAAATGTGATTT
1 AGGCCTAATGGGCCACATAAAGGTGATTT
* ** *
81519521 AGGCTTAATGGGCCATGTATAGGTGATTT
1 AGGCCTAATGGGCCACATAAAGGTGATTT
*
81519550 AGGCCTAATAGGCCA
1 AGGCCTAATGGGCCA
81519565 TATATGCATT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (29 bp):
AGGCCTAATGGGCCACATAAAGGTGATTT
Found at i:81522796 original size:71 final size:67
Alignment explanation
Indices: 81522719--81522860 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 67
81522709 TCACCAGATA
* * *
81522719 CAGATATTATGGCTAGGCCACCAGAACAGATATATATATGTGACGAAGCCACCAGATTGCAGCGA
1 CAGATATTATGACGAAGCCACCAGAACAG----ATATATGTGACGAAGCCACCAGATTGCAGCGA
81522784 GGCTGC
62 GGCTGC
* * *
81522790 CAGATATTATGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTATGACGAAGCCACCAGAACAGATATATGTGACGAAGCCACCAGATTGCAGCGAGGCT
81522855 GC
66 GC
81522857 CAGA
1 CAGA
81522861 ACACATCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 40 0.62
71 25 0.38
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (67 bp):
CAGATATTATGACGAAGCCACCAGAACAGATATATGTGACGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:81526351 original size:46 final size:46
Alignment explanation
Indices: 81526296--81526432 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
81526286 TATATATACA
* * * * *
81526296 CATCTCATACATATCTCACATTAGTCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
81526342 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
81526388 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
81526433 ATACATGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:81526467 original size:47 final size:47
Alignment explanation
Indices: 81526406--81526687 Score: 299
Period size: 47 Copynumber: 6.1 Consensus size: 47
81526396 ACACATTTCG
* *
81526406 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
81526453 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
81526500 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * * **
81526547 CA---G--AAT--GACTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * *
81526587 CATTGGTCATTCGGCCTTATCCTGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTA---T-CACATATATACATGTTCACATTCATCA
* * ** *
81526638 CATTTGCCATTCGGCCTTATCTCATATATACACATTCGCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
81526685 CAT
1 CAT
81526688 AAAATCCTAA
Statistics
Matches: 201, Mismatches: 23, Indels: 22
0.82 0.09 0.09
Matches are distributed among these distances:
40 35 0.17
42 2 0.01
43 1 0.00
44 1 0.00
45 2 0.01
47 119 0.59
48 1 0.00
50 1 0.00
51 39 0.19
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:81526633 original size:51 final size:48
Alignment explanation
Indices: 81526573--81526687 Score: 160
Period size: 51 Copynumber: 2.4 Consensus size: 48
81526563 ACATACGCAT
* *
81526573 GTTCACATTCATCACATTGGTCATTCGGCCTTATCCTGCATATATATACA
1 GTTCACATTCATCACATTGGCCATTCGGCCTTAT-CT-CATATATACACA
*
81526623 GGTTCACATTCATCACATTTGCCATTCGGCCTTATCTCATATATACACA
1 -GTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACACA
*
81526672 -TTCGCATTCATCACAT
1 GTTCACATTCATCACAT
81526688 AAAATCCTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
47 15 0.25
49 11 0.18
50 2 0.03
51 32 0.53
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (48 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACACA
Found at i:81526680 original size:138 final size:134
Alignment explanation
Indices: 81526436--81526686 Score: 367
Period size: 138 Copynumber: 1.8 Consensus size: 134
81526426 CACATATATA
* *
81526436 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCAC
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACAGGTTCACATTCATCAC
* **
81526501 ATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAGAATGACTTATCACACA
66 ATTGGCCATTCGGCCTTATCACACATACACACATTCACATTCATCACAGAATGACTTATCACACA
81526566 TACG
131 TACG
*
81526570 CATGTTCACATTCATCACATTGGTCATTCGGCCTTATCCTGCATATATATACAGGTTCACATTCA
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTAT-CT-C--ATATATACAGGTTCACATTCA
* * * * *
81526635 TCACATTTGCCATTCGGCCTTATCTCATATATACACATTCGCATTCATCACA
62 TCACATTGGCCATTCGGCCTTATCACACATACACACATTCACATTCATCACA
81526687 TAAAATCCTA
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
134 36 0.35
135 2 0.02
136 1 0.01
138 63 0.62
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (134 bp):
CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACAGGTTCACATTCATCAC
ATTGGCCATTCGGCCTTATCACACATACACACATTCACATTCATCACAGAATGACTTATCACACA
TACG
Found at i:81526688 original size:25 final size:25
Alignment explanation
Indices: 81526614--81526688 Score: 59
Period size: 25 Copynumber: 3.1 Consensus size: 25
81526604 TATCCTGCAT
** *
81526614 ATATATACAGGTTCACATTCATCAC
1 ATATATACACATTCGCATTCATCAC
* * *
81526639 AT-T-TGC-CATTCGGCCTT-ATCTC
1 ATATATACACATTC-GCATTCATCAC
81526661 ATATATACACATTCGCATTCATCAC
1 ATATATACACATTCGCATTCATCAC
81526686 ATA
1 ATA
81526689 AAATCCTAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 10
0.65 0.16 0.18
Matches are distributed among these distances:
22 9 0.25
23 6 0.17
24 7 0.19
25 14 0.39
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (25 bp):
ATATATACACATTCGCATTCATCAC
Found at i:81537740 original size:29 final size:29
Alignment explanation
Indices: 81537699--81537792 Score: 91
Period size: 29 Copynumber: 3.3 Consensus size: 29
81537689 ATTGTGACTA
*
81537699 GGCCTAAGAGGCCATATAAATGTGATTTG
1 GGCCTAATAGGCCATATAAATGTGATTTG
* * *
81537728 GGCCTAATTGGCCATATACAGGTGATTTG
1 GGCCTAATAGGCCATATAAATGTGATTTG
* * * * *
81537757 GGCCAAATGGGCAATATGAATATGA-TTG
1 GGCCTAATAGGCCATATAAATGTGATTTG
*
81537785 GGCTTAAT
1 GGCCTAAT
81537793 GGGTCAGATA
Statistics
Matches: 52, Mismatches: 13, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
28 9 0.17
29 43 0.83
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (29 bp):
GGCCTAATAGGCCATATAAATGTGATTTG
Found at i:81548486 original size:21 final size:23
Alignment explanation
Indices: 81548462--81548505 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
81548452 TAGGGTCTAG
81548462 GGTGT-GCCATTTTCTC-CTTTT
1 GGTGTAGCCATTTTCTCTCTTTT
* *
81548483 GGTGTAGTCTTTTTCTCTCTTTT
1 GGTGTAGCCATTTTCTCTCTTTT
81548506 CTTTTCCAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 9 0.47
23 5 0.26
ACGTcount: A:0.05, C:0.20, G:0.18, T:0.57
Consensus pattern (23 bp):
GGTGTAGCCATTTTCTCTCTTTT
Found at i:81549718 original size:20 final size:20
Alignment explanation
Indices: 81549693--81549759 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
81549683 GATATGCTAT
*
81549693 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
81549713 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
81549733 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
81549753 ACATGAT
1 ACATGAT
81549760 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:81549880 original size:25 final size:26
Alignment explanation
Indices: 81549811--81549917 Score: 143
Period size: 26 Copynumber: 4.3 Consensus size: 26
81549801 GGAAGTGCAG
*
81549811 AAGGGTTTATGCCCCAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
81549837 AAGGGCTTATGCCCCAGTTTATTGAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
*
81549863 AAGGGCTT-TGCCCCAGTTTA-TCAA
1 AAGGGCTTATGCCCCAGTTTATTGAA
*
81549887 AAGGG-TTTTGCCCCAG-TTATT-AA
1 AAGGGCTTATGCCCCAGTTTATTGAA
81549910 AAGAGGCT
1 AAG-GGCT
81549918 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 2, Indels: 9
0.87 0.02 0.10
Matches are distributed among these distances:
23 10 0.13
24 19 0.25
25 13 0.17
26 33 0.44
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
AAGGGCTTATGCCCCAGTTTATTGAA
Found at i:81550166 original size:31 final size:31
Alignment explanation
Indices: 81550128--81550191 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
81550118 CTGTTAAATG
81550128 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
81550159 AAAGGCTTCGGCCCAGTGCTATGCAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81550190 AA
1 AA
81550192 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81557823 original size:18 final size:19
Alignment explanation
Indices: 81557800--81557876 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 19
81557790 TGATACGTGG
81557800 GATATGATAT-ACATGATT
1 GATATGATATCACATGATT
81557818 GATATGATATGCACATGATTT
1 GATATGATAT-CACATGA-TT
* *
81557839 G-TATAAAATGCACATGATAT
1 GATATGATAT-CACATGAT-T
*
81557859 G-TATGAAATGCACATGAT
1 GATATGATAT-CACATGAT
81557877 GTATTCATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
18 10 0.19
19 1 0.02
20 38 0.73
21 3 0.06
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (19 bp):
GATATGATATCACATGATT
Found at i:81557835 original size:20 final size:19
Alignment explanation
Indices: 81557810--81557880 Score: 90
Period size: 20 Copynumber: 3.6 Consensus size: 19
81557800 GATATGATAT
*
81557810 ACATGATTGATATGATATGC
1 ACATGATTG-TATGAAATGC
*
81557830 ACATGATTTGTATAAAATGC
1 ACATGA-TTGTATGAAATGC
81557850 ACATGATATGTATGAAATGC
1 ACATGAT-TGTATGAAATGC
81557870 ACATGA-TGTAT
1 ACATGATTGTAT
81557881 TCATAAATGC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.11
19 1 0.02
20 37 0.80
21 3 0.07
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (19 bp):
ACATGATTGTATGAAATGC
Found at i:81557956 original size:22 final size:22
Alignment explanation
Indices: 81557928--81557971 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
81557918 GGAAGTGCAG
81557928 AAGGGCTTATGCCCCAGTTTAT
1 AAGGGCTTATGCCCCAGTTTAT
*
81557950 AAGGGCTTATGGCCCAGTTTAT
1 AAGGGCTTATGCCCCAGTTTAT
81557972 TGAAAAGGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (22 bp):
AAGGGCTTATGCCCCAGTTTAT
Found at i:81557993 original size:24 final size:24
Alignment explanation
Indices: 81557928--81558029 Score: 97
Period size: 23 Copynumber: 4.3 Consensus size: 24
81557918 GGAAGTGCAG
*
81557928 AAGGGCTTATGCCCCAGTTTA-T--
1 AAGGGCTT-TACCCCAGTTTATTAA
**
81557950 AAGGGCTTATGGCCCAGTTTATTGAA
1 AAGGGCTT-TACCCCAGTTTATT-AA
*
81557976 AAGGGCTTTA-CCCAGTTTATCAA
1 AAGGGCTTTACCCCAGTTTATTAA
81557999 AAGGGCTTTACCCCAG-TTATTAA
1 AAGGGCTTTACCCCAGTTTATTAA
81558022 AAGAGGCT
1 AAG-GGCT
81558030 AGGCCTCCAG
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
22 20 0.29
23 22 0.31
24 19 0.27
25 1 0.01
26 8 0.11
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (24 bp):
AAGGGCTTTACCCCAGTTTATTAA
Found at i:81558276 original size:31 final size:31
Alignment explanation
Indices: 81558240--81558330 Score: 94
Period size: 38 Copynumber: 2.7 Consensus size: 31
81558230 CTGTTAAATG
*
81558240 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
81558271 AAAGGCTTCGGCCTAGTGCTATGAAATATGAAATATGA
1 AAAGGCTTCGGCC-----C-A-GTAATATGAAATATGA
81558309 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTAATATG
81558331 TTGAGATTGG
Statistics
Matches: 50, Mismatches: 3, Indels: 15
0.74 0.04 0.22
Matches are distributed among these distances:
30 5 0.10
31 13 0.26
32 1 0.02
33 1 0.02
36 1 0.02
37 1 0.02
38 28 0.56
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81566538 original size:21 final size:20
Alignment explanation
Indices: 81566500--81566538 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81566490 TGGGGCCGTA
* *
81566500 AGCCTATTGGGCCTAATTTT
1 AGCCTATAGGGCCCAATTTT
81566520 AGCCTATAGAGGCCCAATT
1 AGCCTATAG-GGCCCAATT
81566539 ACCGAAGTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (20 bp):
AGCCTATAGGGCCCAATTTT
Found at i:81570969 original size:40 final size:40
Alignment explanation
Indices: 81570915--81571032 Score: 209
Period size: 40 Copynumber: 3.0 Consensus size: 40
81570905 CGGATGTAAC
* *
81570915 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
81570955 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
81570995 AACCCACACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
81571033 TTTTTTTCCA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:81581948 original size:41 final size:40
Alignment explanation
Indices: 81581890--81582014 Score: 97
Period size: 41 Copynumber: 3.0 Consensus size: 40
81581880 ATGCTATTAA
* *
81581890 ATATCGATGCCACTGTCCTAGACAAGGTCTTACACGAATC
1 ATATCGATGCCAATGTCCCAGACAAGGTCTTACACGAATC
* * * * **
81581930 ATATGCGATGTCAATGTCCCAGATATGTTCTTACACGTGTTCTC
1 ATAT-CGATGCCAATGTCCCAGACAAGGTCTTACAC--G-AATC
* * * * *
81581974 ATTTTGATGCTAATTTCCCAGACATGGTCTTACACGAATC
1 ATATCGATGCCAATGTCCCAGACAAGGTCTTACACGAATC
81582014 A
1 A
81582015 CACATCGAAG
Statistics
Matches: 64, Mismatches: 17, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
40 7 0.11
41 26 0.41
43 26 0.41
44 5 0.08
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (40 bp):
ATATCGATGCCAATGTCCCAGACAAGGTCTTACACGAATC
Found at i:81587252 original size:29 final size:29
Alignment explanation
Indices: 81587173--81587283 Score: 152
Period size: 29 Copynumber: 3.9 Consensus size: 29
81587163 GAATATAACA
*
81587173 TGATTTGGGCCTAATGGGCCACATAAATG
1 TGATTTGGGCCTAATGGGCCATATAAATG
*
81587202 TGATTTGGGCCTAAAGGGCCATATAAATG
1 TGATTTGGGCCTAATGGGCCATATAAATG
* * *
81587231 TGATTTGGGCCTAATGGGCCATGTGAATA
1 TGATTTGGGCCTAATGGGCCATATAAATG
* *
81587260 T-AATTGGGTCTAATGGGCCATATA
1 TGATTTGGGCCTAATGGGCCATATA
81587284 CAGGTTTGTG
Statistics
Matches: 72, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 19 0.26
29 53 0.74
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (29 bp):
TGATTTGGGCCTAATGGGCCATATAAATG
Found at i:81589709 original size:26 final size:27
Alignment explanation
Indices: 81589680--81589734 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
81589670 CCCTTAACTA
81589680 ATAAAATGACTATTATG-CCCTATGTG
1 ATAAAATGACTATTATGCCCCTATGTG
*
81589706 ATAAAATTACTATTATGCCCCTATGTG
1 ATAAAATGACTATTATGCCCCTATGTG
81589733 AT
1 AT
81589735 GTATGATTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (27 bp):
ATAAAATGACTATTATGCCCCTATGTG
Found at i:81594086 original size:21 final size:21
Alignment explanation
Indices: 81594062--81594105 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
81594052 CAAGGGAAAT
*
81594062 CGATTGATCCATCTCGGAAGC
1 CGATTGATCCATCTCAGAAGC
*
81594083 CGATTGATCCATCTTAGAAGC
1 CGATTGATCCATCTCAGAAGC
81594104 CG
1 CG
81594106 GATTCATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (21 bp):
CGATTGATCCATCTCAGAAGC
Found at i:81598662 original size:45 final size:45
Alignment explanation
Indices: 81598612--81598699 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
81598602 ACATGGGCCC
* *
81598612 GTATTATGGGTTGTGGGTCCATTTTTATTGTTTGACTGTTAAGCT
1 GTATTATGGGCTGTGGGTCCATTTTTACTGTTTGACTGTTAAGCT
81598657 GTATTATGGGCTGTGGGTCCATTTTTACTGTTTGACTGTTAAG
1 GTATTATGGGCTGTGGGTCCATTTTTACTGTTTGACTGTTAAG
81598700 GTTGCACGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.16, C:0.10, G:0.27, T:0.47
Consensus pattern (45 bp):
GTATTATGGGCTGTGGGTCCATTTTTACTGTTTGACTGTTAAGCT
Found at i:81598802 original size:26 final size:27
Alignment explanation
Indices: 81598759--81598815 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
81598749 GACCCCTAAC
*
81598759 TGATAAAATGGCTATTATG-CCCTATG
1 TGATAAAATGACTATTATGTCCCTATG
* *
81598785 TGATAAAATGATTGTTATGTCCCTATG
1 TGATAAAATGACTATTATGTCCCTATG
81598812 TGAT
1 TGAT
81598816 GTATGATTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (27 bp):
TGATAAAATGACTATTATGTCCCTATG
Found at i:81599142 original size:17 final size:18
Alignment explanation
Indices: 81599120--81599153 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81599110 CACATTGAAG
81599120 TGTTTT-AGTGAAAACCA
1 TGTTTTCAGTGAAAACCA
*
81599137 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
81599154 CTTCTTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCA
Found at i:81600235 original size:29 final size:30
Alignment explanation
Indices: 81600157--81600237 Score: 105
Period size: 28 Copynumber: 2.8 Consensus size: 30
81600147 AACCCTACAT
*
81600157 ATATTCATATGGCCCATTTGGCCCAATTTC
1 ATATTCATATGGCCCATTAGGCCCAATTTC
* *
81600187 AT-TT-ATATGGCCCATCAGGCCCTA-TTC
1 ATATTCATATGGCCCATTAGGCCCAATTTC
*
81600214 ATATTCATATGGCCTATTAGGCCC
1 ATATTCATATGGCCCATTAGGCCC
81600238 CAATCACATG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
27 5 0.11
28 19 0.43
29 18 0.41
30 2 0.05
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (30 bp):
ATATTCATATGGCCCATTAGGCCCAATTTC
Found at i:81600251 original size:29 final size:29
Alignment explanation
Indices: 81600191--81600252 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
81600181 AATTTCATTT
* * * *
81600191 ATATGGCCCATCAGGCCCTATTCATATTC
1 ATATGGCCCATCAGGCCCCAATCACATGC
* *
81600220 ATATGGCCTATTAGGCCCCAATCACATGC
1 ATATGGCCCATCAGGCCCCAATCACATGC
81600249 ATAT
1 ATAT
81600253 TCATGCATAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
ATATGGCCCATCAGGCCCCAATCACATGC
Found at i:81606357 original size:27 final size:27
Alignment explanation
Indices: 81606327--81606501 Score: 183
Period size: 27 Copynumber: 6.5 Consensus size: 27
81606317 ATTGAGCCCT
* *
81606327 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAATCAACTCG
* *
81606354 CACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAATCAACTCG
*
81606381 CACACTTAGTGCTACATAGTCAACTCG
1 CACACTTAGTGCTACATAATCAACTCG
** ** *
81606408 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAATCAACTCG
* **
81606435 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAATCAACTCG
* *
81606462 CACACTTAGTGCAACATAGTCGAA-TCG
1 CACACTTAGTGCTACATAATC-AACTCG
81606489 CACACTTAGTGCT
1 CACACTTAGTGCT
81606502 GTACAATTTA
Statistics
Matches: 127, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 125 0.98
28 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAATCAACTCG
Found at i:81606409 original size:54 final size:54
Alignment explanation
Indices: 81606327--81606501 Score: 208
Period size: 54 Copynumber: 3.2 Consensus size: 54
81606317 ATTGAGCCCT
* * * * *
81606327 CACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAATCG
* ** * *
81606381 CACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAATCG
* ** *
81606435 CACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCG
1 CACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAATCG
81606489 CACACTTAGTGCT
1 CACACTTAGTGCT
81606502 GTACAATTTA
Statistics
Matches: 102, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
53 1 0.01
54 101 0.99
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAATCG
Found at i:81606463 original size:81 final size:81
Alignment explanation
Indices: 81606346--81606500 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
81606336 TGCTATATAA
* *
81606346 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTC-AACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAA-TCGCA
81606410 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
81606427 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
81606491 CACTTAGTGC
65 CACTTAGTGC
81606501 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.02
81 63 0.95
82 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81617538 original size:27 final size:27
Alignment explanation
Indices: 81617508--81617685 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
81617498 ATATTGAGCC
* *
81617508 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
81617535 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
81617562 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAATCAA-CT
** ** *
81617590 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
81617617 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
81617644 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
81617671 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81617686 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:81617647 original size:82 final size:81
Alignment explanation
Indices: 81617529--81617684 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
81617519 TGCTATATAA
* *
81617529 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTC-AACCTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAA--TCGC
81617593 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
81617611 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
81617675 CACTTAGTGC
65 CACTTAGTGC
81617685 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 16 0.24
82 48 0.73
83 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81620010 original size:28 final size:28
Alignment explanation
Indices: 81619970--81620025 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
81619960 ATCAACACCC
*
81619970 TGAGGCTATCTCTAAGTCCATCGTCAAA
1 TGAGGCTATCTCTAAGTCCATCCTCAAA
81619998 TGAGGCTATCTCTAAGTCCATCCTCAAA
1 TGAGGCTATCTCTAAGTCCATCCTCAAA
81620026 CCTAACGCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (28 bp):
TGAGGCTATCTCTAAGTCCATCCTCAAA
Found at i:81621113 original size:17 final size:18
Alignment explanation
Indices: 81621091--81621125 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81621081 TCATATTAAA
81621091 GTGTTTT-ATCGAAAACC
1 GTGTTTTCATCGAAAACC
*
81621108 GTGTTTTCATTGAAAACC
1 GTGTTTTCATCGAAAACC
81621126 CTTTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (18 bp):
GTGTTTTCATCGAAAACC
Found at i:81622232 original size:29 final size:29
Alignment explanation
Indices: 81622194--81622281 Score: 115
Period size: 29 Copynumber: 3.0 Consensus size: 29
81622184 CTAATCTCAG
*
81622194 TTATATGGCCCATCAGGCCCAATTCACAT
1 TTATATGGCCCATTAGGCCCAATTCACAT
* *
81622223 TTATATGGCCTATTA-GCCTCAATTCATAT
1 TTATATGGCCCATTAGGCC-CAATTCACAT
* *
81622252 TAATATGGCCCATTAGGCCCAACTCACAT
1 TTATATGGCCCATTAGGCCCAATTCACAT
81622281 T
1 T
81622282 CAATTTTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 3 0.06
29 44 0.88
30 3 0.06
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.32
Consensus pattern (29 bp):
TTATATGGCCCATTAGGCCCAATTCACAT
Found at i:81622351 original size:19 final size:19
Alignment explanation
Indices: 81622327--81622363 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
81622317 CCCATCGAGG
*
81622327 TCATTTAGCCCATTCCAAC
1 TCATTTAGCCAATTCCAAC
*
81622346 TCATTTGGCCAATTCCAA
1 TCATTTAGCCAATTCCAA
81622364 ACCAAGTCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.32, G:0.08, T:0.32
Consensus pattern (19 bp):
TCATTTAGCCAATTCCAAC
Found at i:81626150 original size:27 final size:26
Alignment explanation
Indices: 81626120--81626213 Score: 82
Period size: 27 Copynumber: 3.5 Consensus size: 26
81626110 TGGTGGCTAT
*
81626120 GCCACAATTATTTGATCTAGTGGCTCC
1 GCCAC-ATTATCTGATCTAGTGGCTCC
* * *
81626147 GCCACATATATCTGTTCTGGTGGCTCT
1 GCCACAT-TATCTGATCTAGTGGCTCC
* *
81626174 GCCACGATTATCTG-TACTGGTGGCTCT
1 GCCAC-ATTATCTGAT-CTAGTGGCTCC
*
81626201 GTCACATTATCTG
1 GCCACATTATCTG
81626214 TTCTGGCAGT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
26 11 0.19
27 46 0.78
28 2 0.03
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (26 bp):
GCCACATTATCTGATCTAGTGGCTCC
Found at i:81626197 original size:54 final size:53
Alignment explanation
Indices: 81626109--81626219 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
81626099 TGGAAGCGTC
*
81626109 CTGGTGGCTATGCCACAATTATTTGATCTAGTGGCTCCGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCCGCCACAT-TATCTGTT
* * * * *
81626163 CTGGTGGCTCTGCCACGATTATCTG-TACTGGTGGCTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGAT-CTAGTGGCTCCGCCACATTATCTGTT
81626216 CTGG
1 CTGG
81626220 CAGTCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 13 0.26
54 37 0.74
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCCGCCACATTATCTGTT
Found at i:81633962 original size:26 final size:26
Alignment explanation
Indices: 81633894--81634004 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
81633884 AGGAAGCGTC
* * *
81633894 CTGGTAGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
81633921 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
81633948 CTGG-GGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
81633975 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
81634001 CTGG
1 CTGG
81634005 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
26 25 0.33
27 41 0.55
28 9 0.12
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:81633997 original size:53 final size:53
Alignment explanation
Indices: 81633904--81634004 Score: 159
Period size: 53 Copynumber: 1.9 Consensus size: 53
81633894 CTGGTAGCTA
*
81633904 TGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGGGCTC
1 TGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTGGGGCTC
* *
81633957 TGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTCTGG
81634005 CAGCCATGCT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
53 26 0.59
54 18 0.41
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.37
Consensus pattern (53 bp):
TGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTGGGGCTC
Found at i:81637522 original size:40 final size:40
Alignment explanation
Indices: 81637464--81637567 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
81637454 TGACGACAAA
* * *
81637464 TCAGCTATTTGTGGCACTTAGTGTACGA-TTCAAAATAGCT
1 TCAGCTATATATGGCACTTAGTGTACAATTTC-AAATAGCT
* * *
81637504 TCGGCTATATATGGCACTTAGTGTGCAATTTCAGATAGCT
1 TCAGCTATATATGGCACTTAGTGTACAATTTCAAATAGCT
* *
81637544 TCAGCTATGTACGGCACTTAGTGT
1 TCAGCTATATATGGCACTTAGTGT
81637568 GCAAGATATC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 51 0.94
41 3 0.06
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (40 bp):
TCAGCTATATATGGCACTTAGTGTACAATTTCAAATAGCT
Found at i:81637568 original size:40 final size:40
Alignment explanation
Indices: 81637476--81637571 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
81637466 AGCTATTTGT
* * * *
81637476 GGCACTTAGTGTACGATTCAAAATAGCTTCGGCTATATAT
1 GGCACTTAGTGTGCAATTCAAAATAGCTTCAGCTATATAC
* *
81637516 GGCACTTAGTGTGCAATTTC-AGATAGCTTCAGCTATGTAC
1 GGCACTTAGTGTGCAA-TTCAAAATAGCTTCAGCTATATAC
81637556 GGCACTTAGTGTGCAA
1 GGCACTTAGTGTGCAA
81637572 GATATCGAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
40 46 0.94
41 3 0.06
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (40 bp):
GGCACTTAGTGTGCAATTCAAAATAGCTTCAGCTATATAC
Found at i:81637596 original size:28 final size:28
Alignment explanation
Indices: 81637556--81637656 Score: 121
Period size: 28 Copynumber: 3.6 Consensus size: 28
81637546 AGCTATGTAC
**
81637556 GGCACTTAGTGTGCAAGATATCGAGTGT
1 GGCACTTAGTGTGTGAGATATCGAGTGT
* *
81637584 GGCACTTAGTGTGTGAGATACCAAGTGT
1 GGCACTTAGTGTGTGAGATATCGAGTGT
* * * * *
81637612 GGCCCTTAGTGCGTGAGATATTGAATAT
1 GGCACTTAGTGTGTGAGATATCGAGTGT
81637640 GGCACTTAGTGTGTGAG
1 GGCACTTAGTGTGTGAG
81637657 GCATTGAGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.30
Consensus pattern (28 bp):
GGCACTTAGTGTGTGAGATATCGAGTGT
Found at i:81639033 original size:22 final size:20
Alignment explanation
Indices: 81639003--81639046 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
81638993 AATTTATGTG
*
81639003 AATGAATGCTTTATGCTTGATA
1 AATGAATGCTATATG-TTG-TA
*
81639025 AATGTATGCTATATGTTGTA
1 AATGAATGCTATATGTTGTA
81639045 AA
1 AA
81639047 ATAATCGGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 3 0.15
22 13 0.65
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (20 bp):
AATGAATGCTATATGTTGTA
Found at i:81641866 original size:56 final size:56
Alignment explanation
Indices: 81641776--81641943 Score: 273
Period size: 56 Copynumber: 3.0 Consensus size: 56
81641766 TCTAACATGT
* * * *
81641776 AATCACATATCGATGCCAATGTACTAGACGTGGTCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACATATATCGA
* *
81641832 AATCACATATCGATGCCAATGTATTAAACATGGTCTTACTTGCACACATATATCAA
1 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACATATATCGA
*
81641888 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACATATATCGA
1 AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACATATATCGA
81641944 TGCCATGGTC
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 103 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACATATATCGA
Found at i:81642149 original size:16 final size:16
Alignment explanation
Indices: 81642128--81642160 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
81642118 ATTCAATTCG
81642128 TCATTTATAATATACA
1 TCATTTATAATATACA
81642144 TCATTTATAATATACA
1 TCATTTATAATATACA
81642160 T
1 T
81642161 AAATTGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (16 bp):
TCATTTATAATATACA
Found at i:81642535 original size:28 final size:31
Alignment explanation
Indices: 81642483--81642539 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
81642473 TCCCTACACT
81642483 TTATTTATTTCACATTTTAGTCCCTCAATTTA
1 TTATTTATTTCACATTTTAGTCCCT-AATTTA
81642515 TTATTT-TTTCA-A-TTTAG-CCCTAATT
1 TTATTTATTTCACATTTTAGTCCCTAATT
81642540 ACTCAAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 4 0.16
28 4 0.16
29 5 0.20
30 1 0.04
31 5 0.20
32 6 0.24
ACGTcount: A:0.25, C:0.18, G:0.04, T:0.54
Consensus pattern (31 bp):
TTATTTATTTCACATTTTAGTCCCTAATTTA
Found at i:81647246 original size:40 final size:43
Alignment explanation
Indices: 81647147--81647247 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 43
81647137 TAGAACGATT
81647147 TTGCACACTTAGTGCCATCTCAATTAGCCGAAGCTAAGTCAATA
1 TTGCACACTTAGTGCCATCT-AATTAGCCGAAGCTAAGTCAATA
* *
81647191 TCGCACACTTAGTGCC-TC--ATATAGCCGAAGCT-AGTTTAA-A
1 TTGCACACTTAGTGCCATCTAAT-TAGCCGAAGCTAAG-TCAATA
81647231 TTGCACACTTAGTGCCA
1 TTGCACACTTAGTGCCA
81647248 ACCCTGAACC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
40 20 0.39
41 14 0.27
43 2 0.04
44 15 0.29
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
TTGCACACTTAGTGCCATCTAATTAGCCGAAGCTAAGTCAATA
Found at i:81647259 original size:7 final size:7
Alignment explanation
Indices: 81647247--81647293 Score: 67
Period size: 7 Copynumber: 6.6 Consensus size: 7
81647237 ACTTAGTGCC
*
81647247 AACCCTG
1 AACCCTA
81647254 AACCCTA
1 AACCCTA
81647261 AACCCTAA
1 AACCCT-A
81647269 AACCCTA
1 AACCCTA
*
81647276 AACCTTA
1 AACCCTA
81647283 AACCCTA
1 AACCCTA
81647290 AACC
1 AACC
81647294 GAACATATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
7 29 0.81
8 7 0.19
ACGTcount: A:0.43, C:0.40, G:0.02, T:0.15
Consensus pattern (7 bp):
AACCCTA
Found at i:81647279 original size:22 final size:22
Alignment explanation
Indices: 81647247--81647291 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
81647237 ACTTAGTGCC
*
81647247 AACCCTGAACCCTAAACCCTAA
1 AACCCTAAACCCTAAACCCTAA
*
81647269 AACCCTAAACCTTAAACCCTAA
1 AACCCTAAACCCTAAACCCTAA
81647291 A
1 A
81647292 CCGAACATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.38, G:0.02, T:0.16
Consensus pattern (22 bp):
AACCCTAAACCCTAAACCCTAA
Found at i:81651825 original size:10 final size:10
Alignment explanation
Indices: 81651810--81651834 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81651800 CTTTAATATC
81651810 ACATACTTAT
1 ACATACTTAT
81651820 ACATACTTAT
1 ACATACTTAT
81651830 ACATA
1 ACATA
81651835 ACATGTGGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.36
Consensus pattern (10 bp):
ACATACTTAT
Found at i:81652157 original size:56 final size:56
Alignment explanation
Indices: 81652090--81652200 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
81652080 TCTTACATGT
*
81652090 AATCACATATCGATGCCAACATACTAGACGTGGTCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAACATACTAAACGTGGTCTTACTCGCACACATATATCGG
*
81652146 AATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATATATCG
1 AATCACATATCGATGCCAACATACTAAACGTGGTCTTACTCGCACACATATATCG
81652201 ATGCCATGGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (56 bp):
AATCACATATCGATGCCAACATACTAAACGTGGTCTTACTCGCACACATATATCGG
Found at i:81652778 original size:29 final size:30
Alignment explanation
Indices: 81652731--81652787 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
81652721 TCCCTACATT
81652731 TTATTTATTTCACATTTTAGTCCCTCAATTTA
1 TTATTTATTTCACATTTTAG-CCCT-AATTTA
81652763 TTATTT-TTTCA-A-TTTAGCCCTAATT
1 TTATTTATTTCACATTTTAGCCCTAATT
81652788 ACTCAAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 4 0.16
28 4 0.16
29 5 0.20
30 1 0.04
31 5 0.20
32 6 0.24
ACGTcount: A:0.25, C:0.18, G:0.04, T:0.54
Consensus pattern (30 bp):
TTATTTATTTCACATTTTAGCCCTAATTTA
Found at i:81652783 original size:28 final size:31
Alignment explanation
Indices: 81652719--81652787 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 31
81652709 TGCTTATACA
81652719 AGTCCCTACA-TT-TTATTTATTTCACATTTT
1 AGTCCCTA-ATTTATTATTTATTTCACATTTT
81652749 AGTCCCTCAATTTATTATTT-TTTCA-A-TTT
1 AGTCCCT-AATTTATTATTTATTTCACATTTT
81652778 AG-CCCTAATT
1 AGTCCCTAATT
81652788 ACTCAAATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
27 4 0.11
28 4 0.11
29 5 0.14
30 9 0.25
31 8 0.22
32 6 0.17
ACGTcount: A:0.25, C:0.20, G:0.04, T:0.51
Consensus pattern (31 bp):
AGTCCCTAATTTATTATTTATTTCACATTTT
Found at i:81659505 original size:46 final size:46
Alignment explanation
Indices: 81659453--81659634 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
81659443 AGTGTGCTCT
* *
81659453 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
81659499 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
81659545 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
81659591 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
81659635 TCATGTTAAA
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 122 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:81681956 original size:25 final size:25
Alignment explanation
Indices: 81681927--81681974 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81681917 TTATAATATG
* * *
81681927 AAAATGCCCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
81681952 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
81681975 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:81682041 original size:20 final size:20
Alignment explanation
Indices: 81682018--81682072 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
81682008 TAAACATGGT
*
81682018 ATGTATGATATGCGCATGAC
1 ATGTATGATATGCACATGAC
81682038 ATGTATGATATGCACATG--
1 ATGTATGATATGCACATGAC
81682056 A--TATGATATGCACATGA
1 ATGTATGATATGCACATGA
81682073 TGTATTCATA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
16 15 0.45
18 1 0.03
20 17 0.52
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:81682062 original size:16 final size:16
Alignment explanation
Indices: 81682036--81682073 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
81682026 TATGCGCATG
81682036 ACATG-TATGATATGC
1 ACATGATATGATATGC
81682051 ACATGATATGATATGC
1 ACATGATATGATATGC
81682067 ACATGAT
1 ACATGAT
81682074 GTATTCATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (16 bp):
ACATGATATGATATGC
Found at i:81682150 original size:24 final size:24
Alignment explanation
Indices: 81682123--81682313 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
81682113 GAGGAAGTGC
81682123 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
81682147 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
81682171 AAAAGGGGTTATGCCCTA-TTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
81682194 AACAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
81682218 AAAAGGGGTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
81682242 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
81682266 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
81682290 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
81682314 ATGATAAAGC
Statistics
Matches: 149, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
23 19 0.13
24 119 0.80
25 11 0.07
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:81682246 original size:71 final size:72
Alignment explanation
Indices: 81682123--81682313 Score: 267
Period size: 71 Copynumber: 2.7 Consensus size: 72
81682113 GAGGAAGTGC
* * * *
81682123 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGGTTATGCCCT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGGTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
*
81682188 A-TTGTT
66 AGTTATT
* *
81682194 AACAGGGCTTATGCCCCAGTTATCAAAAGGGGTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGGTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
81682259 AGTTATT
66 AGTTATT
* * * *
81682266 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGGTTATGCC-CCAGTTAT
81682314 ATGATAAAGC
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
71 60 0.57
72 37 0.35
73 8 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGGTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTATT
Found at i:81690456 original size:24 final size:24
Alignment explanation
Indices: 81690428--81690550 Score: 158
Period size: 24 Copynumber: 5.0 Consensus size: 24
81690418 GGAGGAAGTG
*
81690428 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
81690452 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
81690476 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
81690500 CAAAAGGGCTTTTGCCCCCCAGTTAT
1 CAAAAGGGCTTATG--CCCCAGTTAT
* *
81690526 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
81690551 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
24 60 0.68
25 8 0.09
26 17 0.19
27 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:81701432 original size:53 final size:51
Alignment explanation
Indices: 81701361--81701477 Score: 144
Period size: 51 Copynumber: 2.3 Consensus size: 51
81701351 CCGGAATAGT
* * * *
81701361 AACAGTAACAATAGCAGTACGGTACACAGAGTACCCCATCGGAACAAATCTGG
1 AACAGTAACAGTAACAGTAAGGT--ACAGAGTACCCCATCGGAACAAATCCGG
* * * *
81701414 AATAGTAACAGTAACAGTAAGGTACGGAGTACCTCTTCGGAACAAATCCGG
1 AACAGTAACAGTAACAGTAAGGTACAGAGTACCCCATCGGAACAAATCCGG
81701465 AACAGTAACAGTA
1 AACAGTAACAGTA
81701478 CGGTAACAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
51 36 0.65
53 19 0.35
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.17
Consensus pattern (51 bp):
AACAGTAACAGTAACAGTAAGGTACAGAGTACCCCATCGGAACAAATCCGG
Found at i:81701530 original size:46 final size:46
Alignment explanation
Indices: 81701480--81701608 Score: 190
Period size: 45 Copynumber: 2.8 Consensus size: 46
81701470 TAACAGTACG
* *
81701480 GTAACAATATCCGACACACAAAGTACCGAATCGGTAACCTG-TAACA
1 GTAACAATATTCGACACACAAAGTGCCGAATCGGTAACC-GATAACA
*
81701526 GTAACAATATTCGACACACAAAGTGCTGAATCGGTAA-CGATAACA
1 GTAACAATATTCGACACACAAAGTGCCGAATCGGTAACCGATAACA
* *
81701571 ATAACAATATTCGACACACAAAGTGTCGAATCGGTAAC
1 GTAACAATATTCGACACACAAAGTGCCGAATCGGTAAC
81701609 AGTAGCAGTA
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
44 1 0.01
45 40 0.53
46 34 0.45
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.19
Consensus pattern (46 bp):
GTAACAATATTCGACACACAAAGTGCCGAATCGGTAACCGATAACA
Found at i:81705819 original size:26 final size:25
Alignment explanation
Indices: 81705748--81705831 Score: 109
Period size: 26 Copynumber: 3.4 Consensus size: 25
81705738 CTGGAGGCCT
*
81705748 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
81705772 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
81705797 AGCCCTTTTCGGTAAATTGGGGCAAA
1 AGCCCTTTT-GATAAACTGGGGCAAA
81705823 AGCCCTTTT
1 AGCCCTTTT
81705832 TGCACTTCTT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
23 7 0.13
24 13 0.24
25 11 0.20
26 23 0.43
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:81705892 original size:11 final size:11
Alignment explanation
Indices: 81705878--81705925 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 11
81705868 TCATGAATAC
*
81705878 ATCATGTGCAT
1 ATCATGTACAT
81705889 ATCA--TACAT
1 ATCATGTACAT
81705898 ATCATGTACAT
1 ATCATGTACAT
81705909 ATC-T-TACAT
1 ATCATGTACAT
81705918 ATCATGTA
1 ATCATGTA
81705926 TATCAGAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
9 16 0.50
10 2 0.06
11 14 0.44
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:81705901 original size:20 final size:20
Alignment explanation
Indices: 81705878--81705925 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
81705868 TCATGAATAC
*
81705878 ATCATGTGCATATCATACAT
1 ATCATGTACATATCATACAT
*
81705898 ATCATGTACATATCTTACAT
1 ATCATGTACATATCATACAT
81705918 ATCATGTA
1 ATCATGTA
81705926 TATCAGAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (20 bp):
ATCATGTACATATCATACAT
Found at i:81713799 original size:26 final size:25
Alignment explanation
Indices: 81713728--81713811 Score: 118
Period size: 26 Copynumber: 3.4 Consensus size: 25
81713718 CTGGAGGCCT
*
81713728 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
81713752 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
81713777 AGCCCTTTTCGGTAAACTGGGGCAAA
1 AGCCCTTTT-GATAAACTGGGGCAAA
81713803 AGCCCTTTT
1 AGCCCTTTT
81713812 TGGACTTCCT
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
23 7 0.13
24 13 0.24
25 11 0.20
26 24 0.44
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:81713882 original size:20 final size:20
Alignment explanation
Indices: 81713859--81713905 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
81713849 TTATGAATAC
81713859 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
81713879 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
81713899 ATCATGT
1 ATCATGT
81713906 ATATCAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:81713884 original size:5 final size:5
Alignment explanation
Indices: 81713867--81713903 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
81713857 ACATCATGTG
81713867 CATAT CATA- CATAT CATAT GCATAT CATA- CATAT CAT
1 CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CAT
81713904 GTATATCAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 8 0.28
5 16 0.55
6 5 0.17
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.35
Consensus pattern (5 bp):
CATAT
Found at i:81713890 original size:11 final size:9
Alignment explanation
Indices: 81713867--81713903 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
81713857 ACATCATGTG
81713867 CATATCATA
1 CATATCATA
81713876 CATATCATA
1 CATATCATA
81713885 TGCATATCATA
1 --CATATCATA
81713896 CATATCAT
1 CATATCAT
81713904 GTATATCAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 17 0.65
11 9 0.35
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:81713984 original size:24 final size:24
Alignment explanation
Indices: 81713942--81713988 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
81713932 ATAATTAAAC
* * *
81713942 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAATAGTCATTTTA
81713966 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
81713989 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (24 bp):
CCTAGGGGCAAAATAGTCATTTTA
Found at i:81733452 original size:47 final size:47
Alignment explanation
Indices: 81733401--81733502 Score: 195
Period size: 47 Copynumber: 2.2 Consensus size: 47
81733391 CTCGGCCCGT
81733401 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
81733448 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
81733495 TCATATAT
1 ACATATAT
81733503 GCTGTTCACA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (47 bp):
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
Found at i:81736025 original size:36 final size:37
Alignment explanation
Indices: 81735953--81736030 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
81735943 TTATTACGAA
* *
81735953 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
81735990 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
81736026 GTCTT
1 GTCTT
81736031 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:81736292 original size:22 final size:22
Alignment explanation
Indices: 81736219--81736292 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
81736209 CTTTCACATT
81736219 TCACATCGGCCATTAGGCCTTA
1 TCACATCGGCCATTAGGCCTTA
**** *** *
81736241 TCACATAATACACTTTCACATTCA
1 TCACATCGGCCA-TTAGGCCTT-A
81736265 TCACATCGGCCATTAGGCCTTA
1 TCACATCGGCCATTAGGCCTTA
81736287 TCACAT
1 TCACAT
81736293 ATATACACTT
Statistics
Matches: 34, Mismatches: 16, Indels: 4
0.63 0.30 0.07
Matches are distributed among these distances:
22 15 0.44
23 10 0.29
24 9 0.26
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (22 bp):
TCACATCGGCCATTAGGCCTTA
Found at i:81736317 original size:47 final size:47
Alignment explanation
Indices: 81736196--81736567 Score: 707
Period size: 47 Copynumber: 8.0 Consensus size: 47
81736186 CTCGGCCCTG
81736196 TCACATATATACACTTTCACATT--TCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
81736241 TCACATA-ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
81736287 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
81736334 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
81736381 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
81736428 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
81736475 TCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
81736521 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
81736568 CTATCATTCA
Statistics
Matches: 321, Mismatches: 2, Indels: 6
0.98 0.01 0.02
Matches are distributed among these distances:
44 15 0.05
45 7 0.02
46 75 0.23
47 224 0.70
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:81745569 original size:43 final size:42
Alignment explanation
Indices: 81745519--81745627 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
81745509 AATGCCAACG
* *
81745519 TCCCAGATGTGGTCTTACATGTAATCAAATATCAATGCC-ACTA
1 TCCCAGATATGGTCTTACACGTAATCAAATA-CAATGCCGA-TA
* * * * *
81745562 TCCCAGATAAGGCCTTACACGAAATCAAATACGATGCCGATG
1 TCCCAGATATGGTCTTACACGTAATCAAATACAATGCCGATA
*
81745604 TCCCAGAAATGGTCTTACACGTAA
1 TCCCAGATATGGTCTTACACGTAA
81745628 ATATCAAATA
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
42 27 0.50
43 27 0.50
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
TCCCAGATATGGTCTTACACGTAATCAAATACAATGCCGATA
Found at i:81746055 original size:8 final size:8
Alignment explanation
Indices: 81746042--81746066 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
81746032 AAATTAGCCC
81746042 TCACATTT
1 TCACATTT
81746050 TCACATTT
1 TCACATTT
81746058 TCACATTT
1 TCACATTT
81746066 T
1 T
81746067 AGTCCCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:81750311 original size:29 final size:28
Alignment explanation
Indices: 81750278--81750333 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
81750268 CGAGTTATAT
81750278 TGATTTGGCTTCACGCCATGCATATCAGC
1 TGATTTGGCTTCACGCCATG-ATATCAGC
*
81750307 TGATTTGGCTTCAGGCCATGATATCAG
1 TGATTTGGCTTCACGCCATGATATCAG
81750334 TATTTCAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (28 bp):
TGATTTGGCTTCACGCCATGATATCAGC
Found at i:81756136 original size:36 final size:36
Alignment explanation
Indices: 81756082--81756158 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
81756072 ATAACATTAA
81756082 TAATCCACAAACTCATGTCTAACTCTT-TCCATGCAT
1 TAATCCACAAACTCATGTCTAACT-TTGTCCATGCAT
* * *
81756118 TAATCCACTAACTTATGTCTAACTTTGTCCATGGAT
1 TAATCCACAAACTCATGTCTAACTTTGTCCATGCAT
81756154 TAATC
1 TAATC
81756159 TGAGGGTCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 2 0.05
36 35 0.95
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (36 bp):
TAATCCACAAACTCATGTCTAACTTTGTCCATGCAT
Found at i:81758528 original size:13 final size:13
Alignment explanation
Indices: 81758507--81758590 Score: 96
Period size: 13 Copynumber: 6.5 Consensus size: 13
81758497 AAATTTTTCT
*
81758507 AAAGCACTTCTCA
1 AAAGTACTTCTCA
81758520 AAAGTACTTCTCA
1 AAAGTACTTCTCA
81758533 AAAGTACTTCTCA
1 AAAGTACTTCTCA
* *
81758546 AAAGTACTTTTCC
1 AAAGTACTTCTCA
* * *
81758559 ACAGCACTTTTCA
1 AAAGTACTTCTCA
* *
81758572 AAAGCACTTTTCA
1 AAAGTACTTCTCA
81758585 AAAGTA
1 AAAGTA
81758591 ATGAAGAACT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 63 1.00
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (13 bp):
AAAGTACTTCTCA
Found at i:81758536 original size:26 final size:26
Alignment explanation
Indices: 81758501--81758588 Score: 113
Period size: 26 Copynumber: 3.4 Consensus size: 26
81758491 ACACTTAAAT
*
81758501 TTTTCTAAAGCACTTCTCAAAAGTAC
1 TTTTCAAAAGCACTTCTCAAAAGTAC
* *
81758527 TTCTCAAAAGTACTTCTCAAAAGTAC
1 TTTTCAAAAGCACTTCTCAAAAGTAC
* * * *
81758553 TTTTCCACAGCACTTTTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAGTAC
81758579 TTTTCAAAAG
1 TTTTCAAAAG
81758589 TAATGAAGAA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAGTAC
Found at i:81758801 original size:37 final size:37
Alignment explanation
Indices: 81758759--81758833 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
81758749 TTAAATTTCG
81758759 TAAAAGTAAATTTGTTAAATCAAAATTACATTAACAA
1 TAAAAGTAAATTTGTTAAATCAAAATTACATTAACAA
81758796 TAAAAGTAAATTTGTTAAATCAAAATTACATTAACAA
1 TAAAAGTAAATTTGTTAAATCAAAATTACATTAACAA
81758833 T
1 T
81758834 CATGATATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.33
Consensus pattern (37 bp):
TAAAAGTAAATTTGTTAAATCAAAATTACATTAACAA
Found at i:81760526 original size:24 final size:23
Alignment explanation
Indices: 81760498--81760542 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
81760488 GTAGCTCTAC
*
81760498 ATGAGCGTCCTGATATAGGCTCTT
1 ATGAGCGTCCTGACAT-GGCTCTT
*
81760522 ATGAGCTTCCTGACATGGCTC
1 ATGAGCGTCCTGACATGGCTC
81760543 ACTTGAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (23 bp):
ATGAGCGTCCTGACATGGCTCTT
Found at i:81762565 original size:24 final size:23
Alignment explanation
Indices: 81762537--81762581 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
81762527 GTAGCTCTAC
*
81762537 ATGAGCGTCCTGATATAGGCTCTT
1 ATGAGCGTCCTGACAT-GGCTCTT
*
81762561 ATGAGCTTCCTGACATGGCTC
1 ATGAGCGTCCTGACATGGCTC
81762582 ACTTGAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (23 bp):
ATGAGCGTCCTGACATGGCTCTT
Found at i:81780076 original size:93 final size:93
Alignment explanation
Indices: 81779963--81780134 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
81779953 CGCCCATAAG
*
81779963 CGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
81780027 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACAAGTTCGGATGCCTAGTTACATCTCA
* *
81780056 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81780121 ACAAGTTCGGATGC
66 ACAAGTTCGGATGC
81780135 TCAATCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:81780129 original size:46 final size:46
Alignment explanation
Indices: 81779956--81780131 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
81779946 TGTAGCCCGC
* * *
81779956 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
81780002 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
81780052 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
81780095 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81780132 TGCTCAATCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 59 0.54
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81787675 original size:46 final size:46
Alignment explanation
Indices: 81787528--81787656 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
81787518 TGTAACCCGC
* *
81787528 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACGTTCGCAT
* *
81787574 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
81787620 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81787657 TGCTCAATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 2 0.03
46 75 0.97
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:81791034 original size:14 final size:14
Alignment explanation
Indices: 81791015--81791045 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
81791005 AAACTTGAGT
81791015 TGGATGTCATTAAA
1 TGGATGTCATTAAA
81791029 TGGATGTCATTAAA
1 TGGATGTCATTAAA
81791043 TGG
1 TGG
81791046 TAATTAGACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (14 bp):
TGGATGTCATTAAA
Found at i:81792044 original size:48 final size:48
Alignment explanation
Indices: 81791961--81792133 Score: 229
Period size: 48 Copynumber: 3.6 Consensus size: 48
81791951 GTTATGTGTA
* * * ** *
81791961 ATCCCATGTAAGACCATGTCCGGAATATGTAATTGGCATCGATATTTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
81792009 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
* **
81792057 ATCCCATGTAAGAGCATGTCTGGGACATGGCATTGGTGTCGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
** * *
81792105 ATTTCGTGTAAGACCATGTCTAGGACATG
1 ATCCCATGTAAGACCATGTCTGGGACATG
81792134 TCATCGATAT
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
Found at i:81796159 original size:47 final size:48
Alignment explanation
Indices: 81796073--81796330 Score: 212
Period size: 47 Copynumber: 5.5 Consensus size: 48
81796063 GATAGCCGGC
* *
81796073 GTAAGACCATGTCTGGGACATTGCATCGGCGTAGA-GATGAGTGCTAGT
1 GTAAGACCATGTCTGGGACA-TGCATCGGCCTCGATGATGAGTGCTAGT
*
81796121 GTAAGA-CATGTTTGGGACATGCATCGGCCTCGATGATGA-TAGCTAGT
1 GTAAGACCATGTCTGGGACATGCATCGGCCTCGATGATGAGT-GCTAGT
* * * * * **
81796168 GTAAGA-CGTGTCTGGGACATGCATTGG--T-TAAGTTTTGTGCTAGT
1 GTAAGACCATGTCTGGGACATGCATCGGCCTCGATGATGAGTGCTAGT
** * * * *
81796212 GTAAGA-CATGTCTGGGACATGCATC-ATCACGTATACACGAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGCATCGGCCTCG-AT-GATGAGTGCTAGT
* * * *
81796260 GTAAGACCATGTCTTGGACATGGCATCGGCCTCGATGGTGA-TAGCCAGC
1 GTAAGACCATGTCTGGGACAT-GCATCGGCCTCGATGATGAGT-GCTAGT
81796309 GTAAGACCATGTCTGGGACATG
1 GTAAGACCATGTCTGGGACATG
81796331 GCAGCGACAA
Statistics
Matches: 164, Mismatches: 34, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
44 32 0.20
45 2 0.01
46 13 0.08
47 48 0.29
48 20 0.12
49 39 0.24
50 7 0.04
51 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGCATCGGCCTCGATGATGAGTGCTAGT
Found at i:81803100 original size:47 final size:46
Alignment explanation
Indices: 81803030--81803299 Score: 224
Period size: 46 Copynumber: 5.8 Consensus size: 46
81803020 TAAAGTGTCA
* ***
81803030 ATGCCATGTCCCAGACACAGTCTTACACTGGCTCACATCTCAATTTG
1 ATGCCATGTCCCAGACA-TGTCTTACACTGGCTCACATCTCAAGCCG
* *
81803077 ATGCCATATCCCAGACATGGTCTTACACTGACT-ATCATCTCATAGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTCA-AGCCG
* * * *
81803125 ATG-CATGTCCCAAACATGTCTTACACTGGCTTACTTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTC-AAGCCG
* * * * *
81803171 ATG-CATGTTCCAGACATGTCTTACACTAGCACTCATCTTAATGCCG
1 ATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA-GCCG
* * * ***
81803217 ATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACAT-CTCAAGCCG
* * *
81803265 ATG-CATGTCCCAAACATGTCTTACGCTAGCTCACA
1 ATGCCATGTCCCAGACATGTCTTACACTGGCTCACA
81803300 CAAGTAACCC
Statistics
Matches: 181, Mismatches: 33, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 76 0.42
47 74 0.41
48 29 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGCCG
Found at i:81803264 original size:94 final size:94
Alignment explanation
Indices: 81803076--81803294 Score: 236
Period size: 94 Copynumber: 2.3 Consensus size: 94
81803066 ATCTCAATTT
* *
81803076 GATGCCATATCCCAGACATGGTCTTACACT-G-ACTATCATCTCATAGCCGATGCATGTCCCAAA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTATCATCTAATAGCCGATGCATGTCCCAAA
**
81803139 CATGTCTTACACTGGCTTACTTCTCGAGGCC
64 CATGTCTTACACTGGCTTACTAATCGAGGCC
* **
81803170 GATGCATGTTCCAGACATGTCTTACACTAGCAC--TCATCTTAAT-GCCGATGCCATGTCCCGGA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTATCATC-TAATAGCCGATG-CATGTCCCAAA
*
81803232 CATGGTCTTACACTGGCTCT-CATAAT-GTGGCC
64 CAT-GTCTTACACTGGCT-TAC-TAATCGAGGCC
* *
81803264 GATGCATGTCCCAAACATGTCTTACGCTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
81803295 TCACACAAGT
Statistics
Matches: 107, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
92 22 0.21
93 28 0.26
94 54 0.50
95 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (94 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTATCATCTAATAGCCGATGCATGTCCCAAACA
TGTCTTACACTGGCTTACTAATCGAGGCC
Found at i:81804997 original size:12 final size:14
Alignment explanation
Indices: 81804982--81805013 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
81804972 GTGAGAACAC
81804982 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
81804994 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
81805008 ATGTGT
1 ATGTGT
81805014 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:81805098 original size:50 final size:50
Alignment explanation
Indices: 81804979--81805272 Score: 327
Period size: 50 Copynumber: 5.8 Consensus size: 50
81804969 GTTGTGAGAA
* * *** *
81804979 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT--TGTTAGGT
* *
81805031 CACGTGTGTAGTACTAAGTGCAGGATACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * * * *
81805081 CGCATGTGTAGTACTAAGTGCAGGGTAGTATGTGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGT
* * * * *
81805132 CACGTGGGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * **
81805182 AACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
**
81805232 CACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
81805273 GAGCTTTGGT
Statistics
Matches: 203, Mismatches: 38, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
50 129 0.64
51 39 0.19
52 35 0.17
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:81805161 original size:101 final size:100
Alignment explanation
Indices: 81804980--81805272 Score: 307
Period size: 101 Copynumber: 2.9 Consensus size: 100
81804970 TTGTGAGAAC
* * ** *** * *
81804980 ACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTAC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG--TTAGATCACGTGTGTAGTAC
* * *
81805045 TAAGTGCAGGATACTATGTGTACCAGATTGTTAGGTC
64 TAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTA
* * * ** * * *
81805082 GCATGTGTAGTACTAAGTGCAGGGTAGTATGTGTACCCGATAGCTTCGATCACGTGGGTAGTACT
1 ACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG-TTAGATCACGTGTGTAGTACT
* *
81805147 AAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTA
65 AAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTA
* * * *
81805183 ACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCACATGTGTAGTACTA
1 ACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGATCACGTGTGTAGTACTA
**
81805248 AGTGCAGGCTACTATGCATACCAGA
66 AGTGCAGGCTACTATGTGTACCAGA
81805273 GAGCTTTGGT
Statistics
Matches: 156, Mismatches: 35, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
100 39 0.25
101 84 0.54
102 33 0.21
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (100 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGATCACGTGTGTAGTACTA
AGTGCAGGCTACTATGTGTACCAGATGGTTAGGTA
Found at i:81805278 original size:151 final size:152
Alignment explanation
Indices: 81804986--81805278 Score: 426
Period size: 151 Copynumber: 1.9 Consensus size: 152
81804976 GAACACATGT
* * * * *
81804986 GTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACTAAGTG
1 GTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGG-TTTAGGTAACGTGTGTAGTACTAAGTG
** * * * **
81805051 CAGGATACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGGTAGTATGTGT
65 CAGGATACTACATGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCAT
* *
81805116 ACCCGATAGCTTCGATCACGTGG
130 ACCAGAGAGCTTCGATCACGTGG
*
81805139 GTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTAACGTGTGTAGTACTAAGTGC
1 GTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTAACGTGTGTAGTACTAAGTGC
*
81805203 AGGCTACTACATGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATA
66 AGGATACTACATGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATA
81805268 CCAGAGAGCTT
131 CCAGAGAGCTT
81805279 TGGTCACAAG
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
151 92 0.74
153 32 0.26
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (152 bp):
GTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTAACGTGTGTAGTACTAAGTGC
AGGATACTACATGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATA
CCAGAGAGCTTCGATCACGTGG
Found at i:81817493 original size:85 final size:85
Alignment explanation
Indices: 81817358--81817761 Score: 379
Period size: 85 Copynumber: 4.7 Consensus size: 85
81817348 AAAACAAAAA
* * * ** ***
81817358 AATTAAAATTAAATAAAATTTGTTTCGAGATTTATTCTTGCTGGTTAACAAGATTTTATTCGATT
1 AATT-AAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCATTTAACAAGATTTTATTCGATT
81817423 TTAATTTTGTTTCCAAATTAG
65 TTAATTTTGTTTCCAAATTAG
* * * * * * *
81817444 AATTAAATTAAATTAAAA-CTATTTTGGGATTTATTCTCACCGTGTAACAAGATTTTATTCAATA
1 AATTAAATTAAA-TAAAATCTATTTCGGGATTTATTCCCGCCATTTAACAAGATTTTATTCGATT
* **
81817508 TTGA-TTTGTTTCCAAACGAAG
65 TTAATTTTGTTTCCAAA-TTAG
* * * * * *** * * *
81817529 ACTT-AATCAAAT-AATTTTGTTTCACTATTTATTCCCGTCGTTCAAC-AGATTTTATTAC-ATT
1 AATTAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCATTTAACAAGATTTTATT-CGATT
* * *
81817590 TTGATTTTATTTCCAAAACTAG
65 TTAATTTTGTTTCC-AAATTAG
* * *
81817612 AAATTATAATTAAACAAAATCTATTTTGAGATTTATTCCCGCCATTTAACAAGATTTTATTCGAT
1 -AATTA-AATTAAATAAAATCTATTTCGGGATTTATTCCCGCCATTTAACAAGATTTTATTCGAT
81817677 TTTAATTTTGTTTCCAAATTAG
64 TTTAATTTTGTTTCCAAATTAG
*
81817699 AATTAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCATTTAACAAAATTTTATTCGAT
1 AATTAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCATTTAACAAGATTTTATTCGAT
81817762 ACTGATTTGT
Statistics
Matches: 254, Mismatches: 52, Indels: 25
0.77 0.16 0.08
Matches are distributed among these distances:
82 18 0.07
83 31 0.12
84 24 0.09
85 105 0.41
86 20 0.08
87 31 0.12
88 25 0.10
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (85 bp):
AATTAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCATTTAACAAGATTTTATTCGATTT
TAATTTTGTTTCCAAATTAG
Found at i:81817681 original size:255 final size:256
Alignment explanation
Indices: 81817312--81817806 Score: 751
Period size: 255 Copynumber: 1.9 Consensus size: 256
81817302 TATTCCTACA
* * *
81817312 GTTCAACAGATTTTCTTACATTTTGATTTTGTTGCCAAAACAAAAAAATTAAAATTAAATAAAAT
1 GTTCAACAGATTTTATTACATTTTGATTTTATTGCCAAAACAAAAAAATTAAAATTAAACAAAAT
* * ** **
81817377 TTGTTTCGAGATTTATTCTTGCTGGTTAACAAGATTTTATTCGATTTTAATTTTGTTTCCAAATT
66 CTATTTCGAGATTTATTCCCGCCAGTTAACAAGATTTTATTCGATTTTAATTTTGTTTCCAAATT
* * * *
81817442 AGAATTAAATTAAATTAAAA-CTATTTTGGGATTTATTCTCACCGTGTAACAAGATTTTATTCAA
131 AGAATTAAATTAAA-TAAAATCTATTTCGGGATTTATTCCCACCATGTAACAAAATTTTATTCAA
*
81817506 TATTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTTTGTTTCACTATTTATTCCCGTC
195 TACTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTTTGTTTCACTATTTATTCCCGTC
* * * *
81817568 GTTCAACAGATTTTATTACATTTTGATTTTATTTCCAAAAC-TAGAAATTATAATTAAACAAAAT
1 GTTCAACAGATTTTATTACATTTTGATTTTATTGCCAAAACAAAAAAATTAAAATTAAACAAAAT
* *
81817632 CTATTTTGAGATTTATTCCCGCCATTTAACAAGATTTTATTCGATTTTAATTTTGTTTCCAAATT
66 CTATTTCGAGATTTATTCCCGCCAGTTAACAAGATTTTATTCGATTTTAATTTTGTTTCCAAATT
* * *
81817697 AGAATTAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCATTTAACAAAATTTTATTCGAT
131 AGAATTAAATTAAATAAAATCTATTTCGGGATTTATTCCCACCATGTAACAAAATTTTATTCAAT
*
81817762 ACTGATTTGTTTCTAAACGAAGACTTAATCAAATAATTTTGTTTC
196 ACTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTTTGTTTC
81817807 GAGATTTATT
Statistics
Matches: 214, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
254 5 0.02
255 171 0.80
256 38 0.18
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.43
Consensus pattern (256 bp):
GTTCAACAGATTTTATTACATTTTGATTTTATTGCCAAAACAAAAAAATTAAAATTAAACAAAAT
CTATTTCGAGATTTATTCCCGCCAGTTAACAAGATTTTATTCGATTTTAATTTTGTTTCCAAATT
AGAATTAAATTAAATAAAATCTATTTCGGGATTTATTCCCACCATGTAACAAAATTTTATTCAAT
ACTGATTTGTTTCCAAACGAAGACTTAATCAAATAATTTTGTTTCACTATTTATTCCCGTC
Found at i:81817826 original size:83 final size:84
Alignment explanation
Indices: 81817402--81817839 Score: 327
Period size: 85 Copynumber: 5.2 Consensus size: 84
81817392 TTCTTGCTGG
* * ** * * *
81817402 TTAACAAGATTTTATTCGATTTTAATTTTGTTTCCAAA-TTAGAATTAAATTAAATTAAAACTAT
1 TTAACAAGATTTTATTCGATATTGATTTTGTTTCCAAACGAAGACTT-AATCAAA-TAAATCTAT
* * * * *
81817466 TTTGGGATTTATTCTCACCGT
64 TTCGAGATTTATTCCCGCCAT
* * * * *
81817487 GTAACAAGATTTTATTCAATATTGA-TTTGTTTCCAAACGAAGACTTAATCAAATAATTTTGTTT
1 TTAACAAGATTTTATTCGATATTGATTTTGTTTCCAAACGAAGACTTAATCAAATAAATCTATTT
* * *
81817551 C-ACTATTTATTCCCGTCGT
66 CGA-GATTTATTCCCGCCAT
* * * * * *
81817570 TCAAC-AGATTTTATTAC-ATTTTGATTTTATTTCCAAAACTAGAA-ATTATAATTAAACAAAAT
1 TTAACAAGATTTTATT-CGATATTGATTTTGTTTCC-AAAC--GAAGACT-TAATCAAA-TAAAT
*
81817632 CTATTTTGAGATTTATTCCCGCCAT
60 CTATTTCGAGATTTATTCCCGCCAT
* * ** * *
81817657 TTAACAAGATTTTATTCGATTTTAATTTTGTTTCCAAA-TTAGAATTAAATTAAATAAAATCTAT
1 TTAACAAGATTTTATTCGATATTGATTTTGTTTCCAAACGAAGACTT-AATCAAAT-AAATCTAT
*
81817721 TTCGGGATTTATTCCCGCCAT
64 TTCGAGATTTATTCCCGCCAT
* * * * * *
81817742 TTAACAAAATTTTATTCGATACTGA-TTTGTTTCTAAACGAAGACTTAATCAAATAATTTTGTTT
1 TTAACAAGATTTTATTCGATATTGATTTTGTTTCCAAACGAAGACTTAATCAAATAAATCTATTT
* *
81817806 CGAGATTTATTCCTGGCAT
66 CGAGATTTATTCCCGCCAT
*
81817825 TTAAC-AGACTTTATT
1 TTAACAAGATTTTATT
81817840 TTGATTTAAT
Statistics
Matches: 279, Mismatches: 58, Indels: 35
0.75 0.16 0.09
Matches are distributed among these distances:
82 24 0.09
83 59 0.21
84 42 0.15
85 90 0.32
86 10 0.04
87 28 0.10
88 26 0.09
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (84 bp):
TTAACAAGATTTTATTCGATATTGATTTTGTTTCCAAACGAAGACTTAATCAAATAAATCTATTT
CGAGATTTATTCCCGCCAT
Done.