Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 257 of 325
Found at i:81817859 original size:59 final size:59
Alignment explanation
Indices: 81817794--81817905 Score: 134
Period size: 59 Copynumber: 1.9 Consensus size: 59
81817784 ACTTAATCAA
* * * * *
81817794 ATAATTTTGTTTCGAGATTTATTCCTGGCATTTAACAGACTTTATTTTGATTTAATTAC
1 ATAATTTTATTTCGAGATTTAATCCTGGCATTTAACAAAATTGATTTTGATTTAATTAC
* * * * *
81817853 ATAATTTTATTTTGGGATTTAATCTTGTCGTTTAACAAAATTGATTTTGATTT
1 ATAATTTTATTTCGAGATTTAATCCTGGCATTTAACAAAATTGATTTTGATTT
81817906 TGTTTCAGAA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
59 43 1.00
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (59 bp):
ATAATTTTATTTCGAGATTTAATCCTGGCATTTAACAAAATTGATTTTGATTTAATTAC
Found at i:81825345 original size:43 final size:42
Alignment explanation
Indices: 81825297--81825393 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 42
81825287 AGTCAATTAG
* *
81825297 GATTACCCATCCAGGCTAAATCCTTTA-TATACAAAGATCGATA
1 GATTACCCATCCAGGCTAAATCCTTTACAATACAAA-A-CAATA
* * *
81825340 GATTACCCGTCCCTGGCTAAATCCTTTACAATATAAAACAATA
1 GATTACCCAT-CCAGGCTAAATCCTTTACAATACAAAACAATA
81825383 GATTACCCATC
1 GATTACCCATC
81825394 TGAGATAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
42 1 0.02
43 22 0.48
44 17 0.37
45 6 0.13
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (42 bp):
GATTACCCATCCAGGCTAAATCCTTTACAATACAAAACAATA
Found at i:81825555 original size:43 final size:43
Alignment explanation
Indices: 81825442--81825558 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
81825432 GTTCAACTCA
* * **
81825442 GGATTATCCGTCCGGGCTAAATCCTTTATATACTGAAATCAAT
1 GGATTACCCGTCCGGGCTAAATCCATTCCATACTGAAATCAAT
* * * *
81825485 GGATTACCCATCGGGGCTAAATCCATTCCATATTGAGATCAAT
1 GGATTACCCGTCCGGGCTAAATCCATTCCATACTGAAATCAAT
* *
81825528 GGATTACCCGTCCGAGATAAATCCATTCCAT
1 GGATTACCCGTCCGGGCTAAATCCATTCCAT
81825559 CACATTTACT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (43 bp):
GGATTACCCGTCCGGGCTAAATCCATTCCATACTGAAATCAAT
Found at i:81825566 original size:146 final size:143
Alignment explanation
Indices: 81825295--81825609 Score: 357
Period size: 146 Copynumber: 2.2 Consensus size: 143
81825285 CTAGTCAATT
* * * *
81825295 AGGATTACCCATCCAGGCTAAATCCTTTATATACAAAGATCGATAGATTACCCGTCCCTGGCTAA
1 AGGATTA-CCGTCCAGGCTAAATCCTTTATATACAAAGATCAATAGATTACCCATCCCGGGCTAA
* * * *
81825360 ATCCTTTACAATATAAAACAATAGATTACCCATCTGAGATAAATCCATTCTATCATATTTACTCG
65 ATCCATTACAATATAAAACAATAGATTACCCATCCGAGATAAATCCATTCCATCACATTTACTCG
81825425 AAAGAAAGTTCAACTC
130 --AGAAAGTTCAACTC
* * * *
81825441 AGGATTATCCGTCCGGGCTAAATCCTTTATATACTGAA-ATCAATGGATTACCCAT-CGGGGCTA
1 AGGATTA-CCGTCCAGGCTAAATCCTTTATATAC-AAAGATCAATAGATTACCCATCCCGGGCTA
* * * * *
81825504 AATCCATT-CCATATTGAGATCAATGGATTACCCGTCCGAGATAAATCCATTCCATCACATTTAC
64 AATCCATTACAATA-T-AAAACAATAGATTACCCATCCGAGATAAATCCATTCCATCACATTTAC
* *
81825568 TCGAGAGAGTTTAACTC
127 TCGAGAAAGTTCAACTC
*
81825585 AGGATTACACGTCCAGGCTGAATCC
1 AGGATTAC-CGTCCAGGCTAAATCC
81825610 CATTTTACAT
Statistics
Matches: 143, Mismatches: 22, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
143 1 0.01
144 37 0.26
145 14 0.10
146 89 0.62
147 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (143 bp):
AGGATTACCGTCCAGGCTAAATCCTTTATATACAAAGATCAATAGATTACCCATCCCGGGCTAAA
TCCATTACAATATAAAACAATAGATTACCCATCCGAGATAAATCCATTCCATCACATTTACTCGA
GAAAGTTCAACTC
Found at i:81831236 original size:29 final size:29
Alignment explanation
Indices: 81831204--81831280 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
81831194 AATCATATTC
*
81831204 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
81831233 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
81831262 ATATGGCCCGTTAGACCCA
1 ATATGGCCCATTAGGCCCA
81831281 GTCACATTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:81831529 original size:16 final size:16
Alignment explanation
Indices: 81831508--81831546 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
81831498 CCAAAGTTTT
81831508 AGCTTTTCGGCATTTC
1 AGCTTTTCGGCATTTC
81831524 AGCTTTTCGGCATTTC
1 AGCTTTTCGGCATTTC
*
81831540 GGCTTTT
1 AGCTTTT
81831547 GCCGATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.10, C:0.23, G:0.21, T:0.46
Consensus pattern (16 bp):
AGCTTTTCGGCATTTC
Found at i:81837106 original size:47 final size:47
Alignment explanation
Indices: 81837037--81837205 Score: 170
Period size: 47 Copynumber: 3.6 Consensus size: 47
81837027 GCCCATAAGC
*
81837037 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAT
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAT
* * * *
81837084 GAACTCAGAATCAACTCAACGAGTTCGGA---C--GTTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-T
* *
81837130 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAT
* *
81837177 GAACT-AGGACTCAAGTCAACGAGTTCGGA
1 GAACTCA-GACTCAACTCAACGAGCTCGGA
81837206 CGTTCGCATC
Statistics
Matches: 98, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 27 0.28
47 51 0.52
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAT
Found at i:81837144 original size:93 final size:93
Alignment explanation
Indices: 81837029--81837233 Score: 349
Period size: 93 Copynumber: 2.2 Consensus size: 93
81837019 TGTAACCCGC
* *
81837029 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCATGAACTCA-GA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACT-AGGA
81837093 ATCAACTCAACGAGTTCGGACGTTCGCAT
65 ATCAACTCAACGAGTTCGGACGTTCGCAT
*
81837122 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTAGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTAGGAA
*
81837187 TCAAGTCAACGAGTTCGGACGTTCGCAT
66 TCAACTCAACGAGTTCGGACGTTCGCAT
*
81837215 CCATAAGTGAACTCAGACT
1 CCATAAGTGAACTCGGACT
81837234 GATGCCCAAA
Statistics
Matches: 106, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
92 1 0.01
93 105 0.99
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (93 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTAGGAA
TCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:81837150 original size:46 final size:46
Alignment explanation
Indices: 81837083--81837233 Score: 150
Period size: 46 Copynumber: 3.3 Consensus size: 46
81837073 TTACATCTCA
*
81837083 TGAACTCAGAATCAACTCAACGAGTTCGGACGTTCGCATCCATAAG
1 TGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAG
* * * *
81837129 TGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-
1 TGAACTCAGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCATAAG
* *
81837176 CGAACT-AGGACTCAAGTCAACGAGTTCGGACGTTCGCATCCATAAG
1 TGAACTCA-GACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAG
81837222 TGAACTCAGACT
1 TGAACTCAGACT
81837234 GATGCCCAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
42 3 0.04
43 3 0.04
44 2 0.02
45 2 0.02
46 36 0.44
47 26 0.32
48 2 0.02
49 2 0.02
50 3 0.04
51 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAG
Found at i:81839701 original size:30 final size:30
Alignment explanation
Indices: 81839657--81839725 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
81839647 TAAAGATAAC
* * *
81839657 AAGAAAACC-GAATAAAGAAATTCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAAATA
*
81839686 GAGAAACCCAGAATAAAGAAATCCAAAATA
1 AAGAAACCCAGAATAAAGAAATCCAAAATA
81839716 AAGAAACCCA
1 AAGAAACCCA
81839726 AGATACGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.61, C:0.16, G:0.13, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAAATA
Found at i:81839705 original size:15 final size:15
Alignment explanation
Indices: 81839657--81839725 Score: 61
Period size: 15 Copynumber: 4.7 Consensus size: 15
81839647 TAAAGATAAC
*
81839657 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
**
81839671 AAGAAATTCA-AGATA
1 AAGAAACCCAGA-ATA
*
81839686 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
* *
81839701 AAGAAATCCAAAATA
1 AAGAAACCCAGAATA
81839716 AAGAAACCCA
1 AAGAAACCCA
81839726 AGATACGATA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
14 8 0.19
15 34 0.79
16 1 0.02
ACGTcount: A:0.61, C:0.16, G:0.13, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:81839726 original size:15 final size:15
Alignment explanation
Indices: 81839667--81839726 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
81839657 AAGAAAACCG
**
81839667 AATAAAGAAATTCAA
1 AATAAAGAAACCCAA
* * *
81839682 GATAGAGAAACCCAG
1 AATAAAGAAACCCAA
*
81839697 AATAAAGAAATCCAA
1 AATAAAGAAACCCAA
81839712 AATAAAGAAACCCAA
1 AATAAAGAAACCCAA
81839727 GATACGATAC
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.62, C:0.15, G:0.12, T:0.12
Consensus pattern (15 bp):
AATAAAGAAACCCAA
Found at i:81842740 original size:46 final size:46
Alignment explanation
Indices: 81842665--81842833 Score: 141
Period size: 46 Copynumber: 3.7 Consensus size: 46
81842655 TTACATCTCA
* **
81842665 TGAACTC-GAACTCAACTTAATAAGTTCGGACATTCGCATCCATAAG
1 TGAACTCAG-ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
* * *
81842711 TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-
1 TGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAG
* * * * *
81842758 CGAGCTCGGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAG
1 TGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
*
81842804 TGAACTTAGACTCAACTCAACGAGTTCGGA
1 TGAACTCAGACTCAACTCAACGAGTTCGGA
81842834 TGCCCAAATA
Statistics
Matches: 94, Mismatches: 19, Indels: 20
0.71 0.14 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 49 0.52
47 26 0.28
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
TGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
Found at i:81842771 original size:93 final size:93
Alignment explanation
Indices: 81842611--81842837 Score: 328
Period size: 93 Copynumber: 2.4 Consensus size: 93
81842601 TGTAACCCAC
* * * * *
81842611 CCATAAGCGAACTCGGACTCAATTCAACGAGCTCGGATGCCTATTTACATCTCATGAACTCGAAC
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGAAC
* * *
81842676 TCAACTTAATAAGTTCGGACATTCGCAT
66 TCAACTCAACAAGTTCGAACATTCGCAT
* *
81842704 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAGCTCGGAC
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGAAC
* *
81842769 TCAACTCAACGAGTTCGAACGTTCGCAT
66 TCAACTCAACAAGTTCGAACATTCGCAT
* *
81842797 CCATAAGTGAACTTAGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCC
81842838 CAAATATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 120 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (93 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGAAC
TCAACTCAACAAGTTCGAACATTCGCAT
Found at i:81848552 original size:30 final size:30
Alignment explanation
Indices: 81848518--81848603 Score: 154
Period size: 30 Copynumber: 2.9 Consensus size: 30
81848508 TTTTCGAGCA
*
81848518 TAGGGGTAAAATGGTCATTTTGCCAAGGCC
1 TAGGGGCAAAATGGTCATTTTGCCAAGGCC
81848548 TAGGGGCAAAATGGTCATTTTGCCAAGGCC
1 TAGGGGCAAAATGGTCATTTTGCCAAGGCC
*
81848578 TAGGGGCAAAATGGTCATTTTACCAA
1 TAGGGGCAAAATGGTCATTTTGCCAA
81848604 AGTTGTGAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTGCCAAGGCC
Found at i:81849097 original size:46 final size:46
Alignment explanation
Indices: 81848944--81849250 Score: 184
Period size: 46 Copynumber: 6.6 Consensus size: 46
81848934 TGATTTGTGC
*
81848944 GCCAGTGTAAGACATGTCTGGGACATGCTTCAGCCACATTATGAGT
1 GCCAGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGT
* * * * * * *
81848990 GCCAGTGTAAGTCCATGTTTAGGACATGGCATC-G--ATATCCAAACGAGG
1 GCCAGTGTAAG-ACATGTCTGGGACAT-GCTTCAGCCATAT---TATGAGT
* *
81849038 GCTAGTGTAAGACATGTCTGGGATATGCTTCAGCCATATTATGAGT
1 GCCAGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGT
* * **
81849084 GCCAGAGTAAGACATGTCTGGGACATGCATT-GGCC-TCAACA-GAGAT
1 GCCAGTGTAAGACATGTCTGGGACATGC-TTCAGCCAT-ATTATGAG-T
* * * * ** *
81849130 AGCCAGTGTAAGACGTGTCTGGGACACGCATC-GGC-TAAGA-GTTGT
1 -GCCAGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATG-AGT
* * * * *
81849175 GCTAGTGTAAGACATGTCTGGGACATGCATCAACACGCATA-TATGTGA
1 GCCAGTGTAAGACATGTCTGGGACATGCTTC-A-GC-CATATTATGAGT
81849223 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
81849251 GTATCAACAA
Statistics
Matches: 202, Mismatches: 38, Indels: 39
0.72 0.14 0.14
Matches are distributed among these distances:
44 28 0.14
45 12 0.06
46 55 0.27
47 52 0.26
48 33 0.16
49 22 0.11
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGT
Found at i:81849149 original size:47 final size:44
Alignment explanation
Indices: 81849084--81849205 Score: 138
Period size: 44 Copynumber: 2.7 Consensus size: 44
81849074 TATTATGAGT
* *
81849084 GCCAGAGTAAGACATGTCTGGGACATGCATTGGCCTCAACAGAGAT-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CT--A-AGAGATGA
* * * *
81849131 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGA
*
81849175 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
81849206 AACACGCATA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
43 5 0.08
44 29 0.45
46 2 0.03
47 29 0.45
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGA
Found at i:81853725 original size:16 final size:17
Alignment explanation
Indices: 81853704--81853736 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
81853694 AAGGCCATCC
*
81853704 AATATAGAT-TATAACA
1 AATATACATATATAACA
81853720 AATATACATATATAACA
1 AATATACATATATAACA
81853737 TTTAGTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (17 bp):
AATATACATATATAACA
Found at i:81863871 original size:54 final size:54
Alignment explanation
Indices: 81863789--81863897 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
81863779 AAGGAAGACA
* *
81863789 ATGACTTACATGCTCTCAACCGCCACATCCATCGTTCTCCTTCATGGTGCTGGG
1 ATGACTTACATGCTCTCAACCGCCACATCCATCATTCTCCTTCACGGTGCTGGG
* * *
81863843 ATGACTTACATGTTCTCAACCGCCACATCTATCATTCTTCTTCACGGTGCTGGG
1 ATGACTTACATGCTCTCAACCGCCACATCCATCATTCTCCTTCACGGTGCTGGG
81863897 A
1 A
81863898 CGCACTAGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.20, C:0.31, G:0.17, T:0.31
Consensus pattern (54 bp):
ATGACTTACATGCTCTCAACCGCCACATCCATCATTCTCCTTCACGGTGCTGGG
Found at i:81864818 original size:27 final size:26
Alignment explanation
Indices: 81864770--81864829 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
81864760 GCAAGGTTGC
* *
81864770 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCA-AAA
* * *
81864797 CAGATATTGTGGCTAGGCCACCAAAA
1 CAGATATTGTGACGAAGCCACCAAAA
81864823 CAGATAT
1 CAGATAT
81864830 ATATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:81864842 original size:33 final size:32
Alignment explanation
Indices: 81864791--81864854 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
81864781 ACGAAGTCAC
* *
81864791 CAGATACAGATATTGTGGCTAGGCCACCAAAA
1 CAGATACAGATATTGTGGCGAAGCCACCAAAA
* *
81864823 CAGATATATATATATGTGGCGAAGCCACCAAA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAAA
81864855 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAAAA
Found at i:81865544 original size:26 final size:27
Alignment explanation
Indices: 81865515--81865568 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
81865505 TATCACAAGT
*
81865515 TAGTCATTT-ACGCACAAGGGGCAAAA
1 TAGTCATTTAACACACAAGGGGCAAAA
* *
81865541 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACAAGGGGCAAAA
81865568 T
1 T
81865569 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACAAGGGGCAAAA
Found at i:81865616 original size:54 final size:54
Alignment explanation
Indices: 81865558--81865660 Score: 120
Period size: 54 Copynumber: 1.9 Consensus size: 54
81865548 TTAACACCCT
*
81865558 AGGGGCAAAAT-GGTAATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTAC
1 AGGGG-AAAATCGGT-ATTTCTACCCCAAAAGGGTATCTCGGTAATTCTACCCTAC
* ** * *
81865612 AGGGGTATTTCGGTATTTCTACCCTAAAAGGGTATTTCGGTAATTCTAC
1 AGGGGAAAATCGGTATTTCTACCCCAAAAGGGTATCTCGGTAATTCTAC
81865661 AACTTATCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
53 6 0.15
54 35 0.85
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (54 bp):
AGGGGAAAATCGGTATTTCTACCCCAAAAGGGTATCTCGGTAATTCTACCCTAC
Found at i:81865658 original size:27 final size:27
Alignment explanation
Indices: 81865569--81865660 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
81865559 GGGGCAAAAT
* * *
81865569 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81865596 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81865623 GGTATTTCTACCCTAAAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
81865650 GGTAATTCTAC
1 GGTAATTCTAC
81865661 AACTTATCCA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:81880572 original size:28 final size:28
Alignment explanation
Indices: 81880532--81880585 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
81880522 ACACATGTGA
*
81880532 AGTACTATGTGCAGGCTACTACGTGTTT
1 AGTACTAAGTGCAGGCTACTACGTGTTT
81880560 AGTACTAAGTGCAGGCTACTACGTGT
1 AGTACTAAGTGCAGGCTACTACGTGT
81880586 ACCAGATGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (28 bp):
AGTACTAAGTGCAGGCTACTACGTGTTT
Found at i:81886828 original size:43 final size:43
Alignment explanation
Indices: 81886704--81886854 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 43
81886694 GATTAACGAG
* * * *
81886704 ATGTGATTATGTGTAAGACCATGTATAGGGCATTGGCATC-AT
1 ATGTGATTACGTGTAAGACCATGTCTAGGACATCGGCATCGAT
* * *
81886746 CATGAGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTT
1 -ATGTGATTACGTGTAAGACCATGTCTAGGACATCGGCATCGAT
* * *
81886790 ATTTGATTTCGTGTAAGACCATAG-CTTGG-CTATCGGCATCGAT
1 ATGTGATTACGTGTAAGACCAT-GTCTAGGAC-ATCGGCATCGAT
* * *
81886833 ATGTGATAACATATAAGACCAT
1 ATGTGATTACGTGTAAGACCAT
81886855 ATCTGGGATA
Statistics
Matches: 89, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
42 1 0.01
43 86 0.97
44 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTAGGACATCGGCATCGAT
Found at i:81890031 original size:11 final size:11
Alignment explanation
Indices: 81890015--81890039 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81890005 TTATATATAC
81890015 TAATAAAATAA
1 TAATAAAATAA
81890026 TAATAAAATAA
1 TAATAAAATAA
81890037 TAA
1 TAA
81890040 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:81890343 original size:31 final size:30
Alignment explanation
Indices: 81890308--81890366 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
81890298 CACCCTTAAA
*
81890308 ATATTTGCACTATT-AGCCCTTCAAATTTTTC
1 ATATTTACACT-TTAAGCCC-TCAAATTTTTC
*
81890339 ATATTTACACTTTAATCCCTCAAATTTT
1 ATATTTACACTTTAAGCCCTCAAATTTT
81890367 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.46
Consensus pattern (30 bp):
ATATTTACACTTTAAGCCCTCAAATTTTTC
Found at i:81892871 original size:37 final size:37
Alignment explanation
Indices: 81892818--81892957 Score: 253
Period size: 37 Copynumber: 3.8 Consensus size: 37
81892808 CGAATAGTCC
* * *
81892818 CCACATGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
81892855 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
81892892 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
81892929 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
81892958 ATATATTTCC
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:81893156 original size:48 final size:48
Alignment explanation
Indices: 81893098--81893339 Score: 439
Period size: 48 Copynumber: 5.0 Consensus size: 48
81893088 ATATACACAC
*
81893098 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81893146 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81893194 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
81893242 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
81893290 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
81893338 AT
1 AT
81893340 ATTTATCTTG
Statistics
Matches: 189, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 189 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:81898446 original size:27 final size:26
Alignment explanation
Indices: 81898407--81898557 Score: 101
Period size: 27 Copynumber: 5.7 Consensus size: 26
81898397 TTAGTTTACC
81898407 AAATTAC-AGAAATACCCTCATTTTGCA
1 AAATTACTA-AAATACCCTCA-TTTGCA
*
81898434 AAATTACTAAAATACCCTTGATTTGCA
1 AAATTACTAAAATACCC-TCATTTGCA
* * *
81898461 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTC-ATTTGCA
* * * **
81898488 AAATTACCAAAGTATCCC-CGGTTTATA
1 AAATTACTAAAATA-CCCTC-ATTTGCA
* * *
81898515 AAATTACCAAAATACCGTCGA-TTGTA
1 AAATTACTAAAATACCCTC-ATTTGCA
*
81898541 AAATTACTGAAATACCC
1 AAATTACTAAAATACCC
81898558 CTGTAAGGTA
Statistics
Matches: 101, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
26 21 0.21
27 74 0.73
28 6 0.06
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.29
Consensus pattern (26 bp):
AAATTACTAAAATACCCTCATTTGCA
Found at i:81898491 original size:54 final size:52
Alignment explanation
Indices: 81898401--81898558 Score: 149
Period size: 54 Copynumber: 3.0 Consensus size: 52
81898391 AATACTTTAG
* * *
81898401 TTTACCAAATTACAGAAATACCCTC-ATTTTGCAAAATTACTAAAATACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA--TTGTAAAATTACTAAAATACCC-CGA
* * * * *
81898455 TTTGCAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTATCCCCGG
1 TTTACAAAATTACAGAAATACCCTCGA-TTGTAAAATTACTAAAATA-CCCCGA
* * *
81898509 TTTATAAAATTACCA-AAATACCGTCGATTGTAAAATTACTGAAATACCCC
1 TTTACAAAATTA-CAGAAATACCCTCGATTGTAAAATTACTAAAATACCCC
81898559 TGTAAGGTAG
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
52 4 0.05
53 16 0.19
54 60 0.71
55 5 0.06
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (52 bp):
TTTACAAAATTACAGAAATACCCTCGATTGTAAAATTACTAAAATACCCCGA
Found at i:81898579 original size:27 final size:27
Alignment explanation
Indices: 81898542--81899184 Score: 727
Period size: 27 Copynumber: 23.6 Consensus size: 27
81898532 TCGATTGTAA
*
81898542 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
81898569 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
81898596 AATTACTAAAATAGCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
81898623 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
81898650 AAATACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
81898677 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
81898704 AAATACCGAAATACCCTGCACCCCTGCAGGGTAG
1 AATTACTG-AA-A---T--ACCCCTGTAGGGTAG
* *
81898738 AATTACTGAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
81898765 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
81898792 AATTACCGAAATACCCTTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* ** * *
81898819 AAATACCAAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
81898846 AATT-TTCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
81898873 AAATACTGAAATACCCCTGCAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
81898900 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
81898927 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
81898954 AAATAC-CAAACTACCCTTATAGGGTAG
1 AATTACTGAAA-TACCCCTGTAGGGTAG
81898981 AATTACTGAAATACCCCTGT-GGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
81899007 AATTACTAAAATACCACTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
81899034 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
81899061 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
81899088 AATTATTGAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
81899115 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
81899142 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
81899169 AATTACTGAGATACCC
1 AATTACTGAAATACCC
81899185 TTGTGGGGAA
Statistics
Matches: 523, Mismatches: 79, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
26 28 0.05
27 463 0.89
28 7 0.01
29 2 0.00
32 2 0.00
33 2 0.00
34 19 0.04
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:81899458 original size:27 final size:26
Alignment explanation
Indices: 81899417--81899497 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 26
81899407 GAGGAAGCGC
81899417 TCTGGTGGCTATGCCACAAATATCTGT
1 TCTGGTGGCTATGCCAC-AATATCTGT
*
81899444 TCTGGTGGCTCTGCCACAATATCTGT
1 TCTGGTGGCTATGCCACAATATCTGT
* * * *
81899470 ATCTAGTGACTTTGTCACAATATCTGT
1 -TCTGGTGGCTATGCCACAATATCTGT
81899497 T
1 T
81899498 GACCGATCGA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.21
27 38 0.79
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
TCTGGTGGCTATGCCACAATATCTGT
Found at i:81899666 original size:20 final size:20
Alignment explanation
Indices: 81899626--81899666 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
81899616 TGTGTGCTAT
* *
81899626 TATTGTGGGCTTCGTATCGA
1 TATTGTAGGCTTCGTACCGA
*
81899646 TATTGTAGGCTTCGTGCCGA
1 TATTGTAGGCTTCGTACCGA
81899666 T
1 T
81899667 TATAGACCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.17, G:0.29, T:0.39
Consensus pattern (20 bp):
TATTGTAGGCTTCGTACCGA
Found at i:81899747 original size:20 final size:20
Alignment explanation
Indices: 81899724--81899764 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
81899714 TGTGTGCCGT
*
81899724 TATTGTGGGCTTCGTATCGA
1 TATTGTGGGCTTCGTACCGA
81899744 TATTGTGGGCTTCGTACCGA
1 TATTGTGGGCTTCGTACCGA
81899764 T
1 T
81899765 TATAGACCCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.17, G:0.29, T:0.39
Consensus pattern (20 bp):
TATTGTGGGCTTCGTACCGA
Found at i:81899793 original size:98 final size:98
Alignment explanation
Indices: 81899548--81899786 Score: 406
Period size: 98 Copynumber: 2.4 Consensus size: 98
81899538 TGTGTGCCGT
* *
81899548 TATTGTAGGCTTCATGCCGACTATAGACCCGTTATCAATGGCTGAGTGCCAATCATGTTACCGAA
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCAATCATGTTACCGAA
*
81899613 GGCTGTGTGCTATTATTGTGGGCTTCGTATCGA
66 GGCTGTGTGCCATTATTGTGGGCTTCGTATCGA
*
81899646 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCGATCATGTTACCGAA
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCAATCATGTTACCGAA
*
81899711 GGCTGTGTGCCGTTATTGTGGGCTTCGTATCGA
66 GGCTGTGTGCCATTATTGTGGGCTTCGTATCGA
* * *
81899744 TATTGTGGGCTTCGTACCGATTATAGACCCGTTATCGATGGCT
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCT
81899787 TTGTGCCACA
Statistics
Matches: 133, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 133 1.00
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.33
Consensus pattern (98 bp):
TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCAATCATGTTACCGAA
GGCTGTGTGCCATTATTGTGGGCTTCGTATCGA
Found at i:81899828 original size:25 final size:25
Alignment explanation
Indices: 81899790--81899856 Score: 64
Period size: 27 Copynumber: 2.6 Consensus size: 25
81899780 GATGGCTTTG
*
81899790 TGCCACATATTCTGTT-AAGTGGCTT
1 TGCCACATA-TCTGTTCAAGTGGCTC
**
81899815 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCAAGTGGCTC
81899842 TGCCACAATATCTGT
1 TGCCAC-ATATCTGT
81899857 ATCTGATGAC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
25 11 0.31
26 5 0.14
27 18 0.51
28 1 0.03
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (25 bp):
TGCCACATATCTGTTCAAGTGGCTC
Found at i:81899861 original size:27 final size:27
Alignment explanation
Indices: 81899808--81899888 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
81899798 ATTCTGTTAA
* *
81899808 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTCTGCCACAATATCTGTA-TCTG
81899835 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* * * *
81899862 ATGACTCTGTCACAATATCAGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
81899888 G
1 G
81899889 CAACCATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 4 0.09
27 41 0.89
28 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:81915133 original size:21 final size:20
Alignment explanation
Indices: 81915109--81915160 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
81915099 TTATGCCACA
*
81915109 TCAGTATTCTTATCCTGAATT
1 TCAGTATT-TTATCCAGAATT
*
81915130 TCAGGATTTTATCCAGAATT
1 TCAGTATTTTATCCAGAATT
*
81915150 TTAGTATTTTA
1 TCAGTATTTTA
81915161 ATTTGGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.27, C:0.13, G:0.12, T:0.48
Consensus pattern (20 bp):
TCAGTATTTTATCCAGAATT
Found at i:81915350 original size:25 final size:25
Alignment explanation
Indices: 81915322--81915405 Score: 69
Period size: 27 Copynumber: 3.2 Consensus size: 25
81915312 TAAGTCAGAT
81915322 TATGATTTTTCTAGGGACAACTTGA
1 TATGATTTTTCTAGGGACAACTTGA
* * * ** * *
81915347 TATGGTTTTTATCAAGAGTTAAGTCAGA
1 TAT-GATTTT-TCTAGGGACAACT-TGA
81915375 TTATGATTTTTCTAGGGACAACTTGA
1 -TATGATTTTTCTAGGGACAACTTGA
81915401 TATGA
1 TATGA
81915406 AATGTTTTCT
Statistics
Matches: 41, Mismatches: 14, Indels: 8
0.65 0.22 0.13
Matches are distributed among these distances:
25 8 0.20
26 7 0.17
27 16 0.39
28 7 0.17
29 3 0.07
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (25 bp):
TATGATTTTTCTAGGGACAACTTGA
Found at i:81915361 original size:54 final size:54
Alignment explanation
Indices: 81915297--81915404 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
81915287 TTGGCCATTA
81915297 GTTTTTATCAAGAGTTAAGTCAGATTATGATTTTTCTAGGGACAACTTGATATG
1 GTTTTTATCAAGAGTTAAGTCAGATTATGATTTTTCTAGGGACAACTTGATATG
81915351 GTTTTTATCAAGAGTTAAGTCAGATTATGATTTTTCTAGGGACAACTTGATATG
1 GTTTTTATCAAGAGTTAAGTCAGATTATGATTTTTCTAGGGACAACTTGATATG
81915405 AAATGTTTTC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GTTTTTATCAAGAGTTAAGTCAGATTATGATTTTTCTAGGGACAACTTGATATG
Found at i:81923147 original size:48 final size:48
Alignment explanation
Indices: 81923029--81923150 Score: 172
Period size: 48 Copynumber: 2.5 Consensus size: 48
81923019 GCTGACGCCG
* * ** **
81923029 TGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGCCGATGTA
1 TGTCCCAGACATGTCTTACACTGGCTTAAATATCGCGAGGCCGATACA
* *
81923077 TGTCCTAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATACA
1 TGTCCCAGACATGTCTTACACTGGCTTAAATATCGCGAGGCCGATACA
81923125 TGTCCCAGACATGTCTTACACTGGCT
1 TGTCCCAGACATGTCTTACACTGGCT
81923151 CTCATGCTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (48 bp):
TGTCCCAGACATGTCTTACACTGGCTTAAATATCGCGAGGCCGATACA
Found at i:81926220 original size:46 final size:46
Alignment explanation
Indices: 81926160--81926428 Score: 212
Period size: 46 Copynumber: 5.8 Consensus size: 46
81926150 TATTTGGGCA
* *
81926160 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
81926206 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * *
81926251 CATCCGAGCTCGTTGATTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * *
81926299 TCTGAACTCATTGAGTTCAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
81926344 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
81926392 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81926429 GCGAGTTACA
Statistics
Matches: 174, Mismatches: 31, Indels: 36
0.72 0.13 0.15
Matches are distributed among these distances:
42 6 0.03
43 8 0.05
45 6 0.03
46 84 0.48
47 50 0.29
48 6 0.03
50 8 0.05
51 6 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:81926281 original size:47 final size:47
Alignment explanation
Indices: 81926212--81926374 Score: 174
Period size: 47 Copynumber: 3.5 Consensus size: 47
81926202 AACGTCCAAA
81926212 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
* * * * * * *
81926259 CTCGTTGATTTGAGTCTGAGTTCACTTATGGATGCGAAC---G--TCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAG
* *
81926305 CTCATTGAGTTCAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
81926352 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
81926375 ACTTATGGAT
Statistics
Matches: 89, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 23 0.26
47 46 0.52
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.31
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
Found at i:81926315 original size:93 final size:93
Alignment explanation
Indices: 81926156--81926421 Score: 424
Period size: 93 Copynumber: 2.9 Consensus size: 93
81926146 CAGATATTTG
* * * *
81926156 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACGTCCAAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
81926221 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
81926249 GGCATCCGAGCTCGTTGATTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTCATTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
81926314 TTCAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
81926342 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
81926407 TTGAGTCCAAGTTCG
66 TTGAGTCCGAGTTCG
81926422 CTTATGGGCG
Statistics
Matches: 156, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 156 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:81932534 original size:46 final size:47
Alignment explanation
Indices: 81932463--81932579 Score: 197
Period size: 47 Copynumber: 2.6 Consensus size: 47
81932453 TGTAACCCGC
81932463 CCATAAGTGAACT--GACTCAACTCAACGAGCTCGGGC-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCAGTTCGCAT
81932507 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTAGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-AGTTCGCAT
81932555 -CATAAGTGAACTCGGACTCAACTCA
1 CCATAAGTGAACTCGGACTCAACTCA
81932580 GAGTTCGGAC
Statistics
Matches: 69, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
44 13 0.19
46 23 0.33
47 25 0.36
48 8 0.12
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCAGTTCGCAT
Found at i:81934572 original size:30 final size:30
Alignment explanation
Indices: 81934528--81934616 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
81934518 CAAAGATAAC
*
81934528 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
81934557 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
81934587 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
81934617 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:81934576 original size:15 final size:14
Alignment explanation
Indices: 81934528--81934610 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
81934518 CAAAGATAAC
*
81934528 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
81934542 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
81934557 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
81934572 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
81934587 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
81934602 AAGAAACCC
1 AAGAAACCC
81934611 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:81934616 original size:15 final size:15
Alignment explanation
Indices: 81934539--81934616 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
81934529 AGAAAACCGA
81934539 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
81934554 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
81934568 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
81934583 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
81934599 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
81934614 ATA
1 ATA
81934617 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:81936730 original size:40 final size:40
Alignment explanation
Indices: 81936672--81936761 Score: 171
Period size: 40 Copynumber: 2.2 Consensus size: 40
81936662 GTAACAACTA
*
81936672 GCACGAATGCCTTTGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
81936712 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
81936752 GCACGAATGC
1 GCACGAATGC
81936762 TATGCACATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
Found at i:81945735 original size:19 final size:19
Alignment explanation
Indices: 81945707--81945746 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
81945697 AGAGCAAAAG
81945707 AAACGAG-AAATGGGCCAA
1 AAACGAGAAAATGGGCCAA
*
81945725 AAACGGAGAAAATGGGCTAA
1 AAAC-GAGAAAATGGGCCAA
81945745 AA
1 AA
81945747 TACAAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 3 0.16
20 12 0.63
ACGTcount: A:0.53, C:0.12, G:0.28, T:0.07
Consensus pattern (19 bp):
AAACGAGAAAATGGGCCAA
Found at i:81962742 original size:44 final size:48
Alignment explanation
Indices: 81962626--81962796 Score: 140
Period size: 44 Copynumber: 3.6 Consensus size: 48
81962616 TAAGATGTCA
* * *
81962626 ACGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCAAGGCCG
1 ACGCCATGTCCCAAACAT-GTCTTACACTGAC-TACATATAGCAAGGCCG
* * * *
81962676 ATGCCATGTCCCAAATAGGTCTTACACTGAC-ACATA-A-CAA-GCTG
1 ACGCCATGTCCCAAACATGTCTTACACTGACTACATATAGCAAGGCCG
** * *
81962720 ACGCCATGTCCCAAACATGTCTTACACT-AGCTTGTATATCGCGAGGCCG
1 ACGCCATGTCCCAAACATGTCTTACACTGA-C-TACATATAGCAAGGCCG
*
81962769 ATG-CATGTCCCAGAA-ATGTCTTACACTG
1 ACGCCATGTCCCA-AACATGTCTTACACTG
81962797 GCTCTCATGC
Statistics
Matches: 97, Mismatches: 16, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 29 0.30
45 3 0.03
46 4 0.04
47 4 0.04
48 23 0.24
49 19 0.20
50 14 0.14
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (48 bp):
ACGCCATGTCCCAAACATGTCTTACACTGACTACATATAGCAAGGCCG
Found at i:81962788 original size:48 final size:46
Alignment explanation
Indices: 81962724--81962844 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 46
81962714 AAGCTGACGC
* *
81962724 CATGTCCCA-AACATGTCTTACACTAGCTTGTATATCGCGA-GGCCGATG
1 CATGTCCCAGAA-ATGTCTTACACTAGC-TCT-CAT-GCGATGGCCGATG
* * *
81962772 CATGTCCCAGAAATGTCTTACACTGGCTCTCATGCTATGGCTGATG
1 CATGTCCCAGAAATGTCTTACACTAGCTCTCATGCGATGGCCGATG
*
81962818 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGAAATGTCTTACACTAGC
81962845 ACACATATCA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
45 3 0.05
46 34 0.53
47 2 0.03
48 23 0.36
49 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGAAATGTCTTACACTAGCTCTCATGCGATGGCCGATG
Found at i:81962822 original size:94 final size:93
Alignment explanation
Indices: 81962626--81962844 Score: 250
Period size: 94 Copynumber: 2.3 Consensus size: 93
81962616 TAAGATGTCA
*
81962626 ACGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCAAGGCCGATGCCATGTCCCAAA
1 ACGCCATGTCCCAGACAT-GTCTTACACTAGCTTTCATATAGCAAGGCCGATGCCATGTCCCAAA
81962691 TAGGTCTTACACTGACACATAACAAGCTG
65 TAGGTCTTACACTGACACATAACAAGCTG
* * *
81962720 ACGCCATGTCCCAAACATGTCTTACACTAGCTTGT-ATATCGCGAGGCCGATG-CATGTCCCAGA
1 ACGCCATGTCCCAGACATGTCTTACACTAGCTT-TCATATAGCAAGGCCGATGCCATGTCCCA-A
* * * * *
81962783 A-ATGTCTTACACTGGCTC-TCATGCTATGGCTG
64 ATAGGTCTTACACTGACACAT-A-AC-A-AGCTG
*
81962815 ATG-CATGTCCCAGACATGTCTTACACTAGC
1 ACGCCATGTCCCAGACATGTCTTACACTAGC
81962845 ACACATATCA
Statistics
Matches: 108, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
91 1 0.01
92 24 0.22
93 32 0.30
94 45 0.42
95 6 0.06
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (93 bp):
ACGCCATGTCCCAGACATGTCTTACACTAGCTTTCATATAGCAAGGCCGATGCCATGTCCCAAAT
AGGTCTTACACTGACACATAACAAGCTG
Found at i:81970128 original size:37 final size:37
Alignment explanation
Indices: 81970061--81970132 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
81970051 TCAAAACATA
** *
81970061 ACCCAAACCATTCAATGATGTGTCATTATAGATCAGC
1 ACCCAAACCATTCAATGATGCATCACTATAGATCAGC
*
81970098 ACCCAAACCATTCAATGATGCATCGCTATAGATCA
1 ACCCAAACCATTCAATGATGCATCACTATAGATCA
81970133 CAAACTCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.25
Consensus pattern (37 bp):
ACCCAAACCATTCAATGATGCATCACTATAGATCAGC
Found at i:81972002 original size:23 final size:24
Alignment explanation
Indices: 81971964--81972008 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
81971954 TTTGCTCTTC
*
81971964 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
81971988 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
81972009 ATCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:81972279 original size:108 final size:110
Alignment explanation
Indices: 81972124--81972324 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
81972114 ATCCTTTTGA
* * *
81972124 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
81972187 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
* * *
81972232 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
81972297 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
81972325 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.57
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
Found at i:81972331 original size:55 final size:54
Alignment explanation
Indices: 81972077--81972331 Score: 251
Period size: 55 Copynumber: 4.8 Consensus size: 54
81972067 ACACGGATAC
* * * *
81972077 CTTACC-ATTTCCATGACTTGCCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
81972126 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
81972179 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * *
81972234 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
81972287 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
81972332 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
52 3 0.02
53 43 0.26
54 12 0.07
55 70 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:81975960 original size:29 final size:28
Alignment explanation
Indices: 81975916--81976010 Score: 102
Period size: 27 Copynumber: 3.4 Consensus size: 28
81975906 GAGATTGGCG
* * *
81975916 CTAAGTCTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-AATTATACAGCA
* *
81975945 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTATACAGCA
* *
81975973 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTATACAGCA
*
81976000 CTGAGTGTGCG
1 CTAAGTGTGCG
81976011 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 24 0.40
28 22 0.37
29 14 0.23
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTAATTATACAGCA
Found at i:81975997 original size:27 final size:28
Alignment explanation
Indices: 81975941--81976010 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
81975931 TAAATTGTAC
81975941 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
81975969 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
81975996 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81976011 GACTTAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:81976024 original size:29 final size:27
Alignment explanation
Indices: 81975941--81976024 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
81975931 TAAATTGTAC
* *
81975941 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
81975969 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
81975996 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
81976025 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:81983254 original size:27 final size:28
Alignment explanation
Indices: 81983173--81983267 Score: 129
Period size: 27 Copynumber: 3.4 Consensus size: 28
81983163 GAGATTGGCG
* * * *
81983173 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
81983202 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
81983230 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
81983257 CTGAGTGTGCG
1 CTAAGTGTGCG
81983268 GACTTAATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.39
28 22 0.36
29 15 0.25
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:81983281 original size:29 final size:27
Alignment explanation
Indices: 81983198--81983281 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
81983188 TAAATTGTAC
* *
81983198 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
81983226 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
81983253 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
81983282 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:81995420 original size:25 final size:25
Alignment explanation
Indices: 81995385--81995511 Score: 182
Period size: 25 Copynumber: 5.1 Consensus size: 25
81995375 TAAGCTTGTT
*
81995385 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
*
81995410 AATTTGCTCTTAATAATTCCGGTCA
1 AATTTGCTCTTAATAATTCCGGTTA
*
81995435 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* **
81995460 AATTTGCTCTTAATATTTCTAGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
81995485 AATTTGCTCTTAATATTTCAGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
81995510 AA
1 AA
81995512 GCCCTTATTA
Statistics
Matches: 92, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 92 1.00
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.46
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTCCGGTTA
Found at i:81996411 original size:45 final size:45
Alignment explanation
Indices: 81996347--81996596 Score: 296
Period size: 45 Copynumber: 5.6 Consensus size: 45
81996337 TATCGTACAG
81996347 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * *
81996392 TACTATTCAGGCGTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * * *
81996437 TACTATTTGGGCTTTTCAGCCTAGCAGGTTATAATGCCGGTGAGT-
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA-TA
* *
81996482 TACTATTCGGGCCTTTGAGCCTAGTAGGATATAATGCCGGTG-TGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAT-A
* * * * *
81996527 TA-TATTCGGGCATTCGAGACTAGCAGGCTATAATACCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
*
81996571 TGA-TA-TCGGG-CTTCGAGCCTAGCAGG
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGG
81996597 TGAAATGCCA
Statistics
Matches: 177, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
43 15 0.08
44 40 0.23
45 122 0.69
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
Found at i:82003192 original size:12 final size:12
Alignment explanation
Indices: 82003154--82003216 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
82003144 TTCTTAATAA
82003154 TTCCGGTTAAAT
1 TTCCGGTTAAAT
* **
82003166 TTGCTCTTAATAT
1 TTCCGGTTAA-AT
82003179 TTCCGGTTAAAT
1 TTCCGGTTAAAT
* **
82003191 TTGCTCTTAATAT
1 TTCCGGTTAA-AT
82003204 TTCCGGTTAAAT
1 TTCCGGTTAAAT
82003216 T
1 T
82003217 CGCCCTTATT
Statistics
Matches: 37, Mismatches: 12, Indels: 4
0.70 0.23 0.08
Matches are distributed among these distances:
12 19 0.51
13 18 0.49
ACGTcount: A:0.24, C:0.16, G:0.13, T:0.48
Consensus pattern (12 bp):
TTCCGGTTAAAT
Found at i:82003213 original size:13 final size:13
Alignment explanation
Indices: 82003147--82003213 Score: 57
Period size: 13 Copynumber: 5.3 Consensus size: 13
82003137 AAATTTGTTC
*
82003147 TTAATAATTCCGG
1 TTAATATTTCCGG
* **
82003160 TTAA-ATTTGCTC
1 TTAATATTTCCGG
82003172 TTAATATTTCCGG
1 TTAATATTTCCGG
* **
82003185 TTAA-ATTTGCTC
1 TTAATATTTCCGG
82003197 TTAATATTTCCGG
1 TTAATATTTCCGG
82003210 TTAA
1 TTAA
82003214 ATTCGCCCTT
Statistics
Matches: 39, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
12 17 0.44
13 22 0.56
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46
Consensus pattern (13 bp):
TTAATATTTCCGG
Found at i:82003224 original size:25 final size:25
Alignment explanation
Indices: 82003088--82003216 Score: 204
Period size: 25 Copynumber: 5.2 Consensus size: 25
82003078 TAAGCTTGTT
*
82003088 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
82003113 AATTTTCTCTTAATAATTCCGATTA
1 AATTTGCTCTTAATAATTCCGGTTA
*
82003138 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
*
82003163 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
*
82003188 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
82003213 AATT
1 AATT
82003217 CGCCCTTATT
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 96 1.00
ACGTcount: A:0.28, C:0.14, G:0.10, T:0.48
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTCCGGTTA
Found at i:82003229 original size:25 final size:25
Alignment explanation
Indices: 82003088--82003231 Score: 198
Period size: 25 Copynumber: 5.8 Consensus size: 25
82003078 TAAGCTTGTT
* *
82003088 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
* * *
82003113 AATTTTCTCTTAATAATTCCGATTA
1 AATTTGCTCTTAATATTTCCGGTTA
* *
82003138 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
82003163 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
82003188 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGCTCTTAATATTTCCGGTTA
* * *
82003213 AATTCGCCCTTATTATTTC
1 AATTTGCTCTTAATATTTC
82003232 TAAATAAGTT
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 108 1.00
ACGTcount: A:0.26, C:0.16, G:0.10, T:0.48
Consensus pattern (25 bp):
AATTTGCTCTTAATATTTCCGGTTA
Found at i:82008949 original size:48 final size:48
Alignment explanation
Indices: 82008893--82009031 Score: 181
Period size: 48 Copynumber: 2.9 Consensus size: 48
82008883 TACCACGGTT
*
82008893 ATACATGTAACATGGTGCTAAATGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAATGGATATACCACGATTACACATATTG
* * * * *
82008941 ATACATGTAACGTGGTGTTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAATGGATATACCACGATTACACATATTG
* * * *
82008989 ATTCAT-TAACGTGGTGCTAACTGGATATACCACAATTAAACAT
1 ATACATGTAACGTGGTGCTAAATGGATATACCACGATTACACAT
82009032 GTAACGTGGT
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 30 0.39
48 47 0.61
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAATGGATATACCACGATTACACATATTG
Found at i:82011635 original size:21 final size:22
Alignment explanation
Indices: 82011609--82011649 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
82011599 TACTAAATAC
*
82011609 AGGGGC-ACACGCCCATGTGGG
1 AGGGGCAACACACCCATGTGGG
82011630 AGGGGCAACACACCCATGTG
1 AGGGGCAACACACCCATGTG
82011650 ACCATTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.24, C:0.29, G:0.37, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACACCCATGTGGG
Found at i:82012807 original size:45 final size:46
Alignment explanation
Indices: 82012715--82012930 Score: 183
Period size: 45 Copynumber: 4.7 Consensus size: 46
82012705 GTAGAATGCT
* * *
82012715 GATGCCATGTCCCAAACATGGTCTTACATTGGC--TCATCTCATA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCATCTC-TAGGCC
82012761 GATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCT-TAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTAT-CATCTCTAGGCC
* * * * * *
82012806 GATCCATGTTCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCTAGGCC
* * * * * * *
82012852 GATGCCATGTCCCAGACATGGTCTTACACTGGTTCTGATAATGT-GGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCAT-CTCTAGGCC
82012900 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
82012931 CCACAATAAC
Statistics
Matches: 141, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 13 0.09
45 51 0.36
46 28 0.20
47 27 0.19
48 21 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCTAGGCC
Found at i:82026302 original size:30 final size:30
Alignment explanation
Indices: 82026268--82026328 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
82026258 TCCTTAACTC
*
82026268 AAACTTTGGCAAAATTACAATTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
82026298 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
82026328 A
1 A
82026329 GGCTCAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:82027432 original size:46 final size:46
Alignment explanation
Indices: 82027338--82027551 Score: 213
Period size: 46 Copynumber: 4.6 Consensus size: 46
82027328 GTAGAATGCT
* * *
82027338 GATGCCATGTCCCAAACATGGTCTTACACTGG--CTCATCTTGTA-TCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCC
82027384 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCC
* * * * *
82027430 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCC
* * * * *
82027476 GATACCATGTCCCAGACATGGTCTTACACTGGCTCTGATAAT-GTGGCT
1 GAT-GCATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCC
82027524 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
82027552 AGCCCAAAAT
Statistics
Matches: 141, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 64 0.45
47 28 0.20
48 21 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCC
Found at i:82027528 original size:94 final size:90
Alignment explanation
Indices: 82027335--82027554 Score: 257
Period size: 94 Copynumber: 2.4 Consensus size: 90
82027325 GGGGTAGAAT
* ** *
82027335 GCTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCTTGTATCCGATGCATGTCCCAGAC
1 GCTGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCATCTTCAATCCGATCCATGTCCCAGAC
*
82027400 ATGTCTTACACTGGCTTACATCTCGAG
64 ATGTCTTACACTGGCTTACATATCGAG
*
82027427 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTC-TCGTCTCAATGCCGATACCATGTCCCAG
1 GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCATC-T-TCAAT-CCGAT-CCATGTCCCAG
* *
82027491 ACATGGTCTTACACTGGCTCT-GATAAT-GTG
62 ACAT-GTCTTACACTGGCT-TACAT-ATCGAG
*
82027521 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCTGATGCATGTCCCAAACATGTCTTACACTAGC
82027555 CCAAAATAAC
Statistics
Matches: 111, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
89 2 0.02
90 15 0.14
91 17 0.15
92 11 0.10
93 14 0.13
94 50 0.45
95 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (90 bp):
GCTGATGCATGTCCCAAACATGTCTTACACTAGCTCATCTTCAATCCGATCCATGTCCCAGACAT
GTCTTACACTGGCTTACATATCGAG
Found at i:82034113 original size:28 final size:28
Alignment explanation
Indices: 82034073--82034142 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
82034063 ATTGCATGAC
*
82034073 TATGAATGTGATT-CGGCCTGATGGGCCA
1 TATGAATGTGATTGCGGCC-GATAGGCCA
* *
82034101 TATGGATGTGATTGGGGCCGATAGGCCA
1 TATGAATGTGATTGCGGCCGATAGGCCA
*
82034129 TATGAATGAGATTG
1 TATGAATGTGATTG
82034143 AGCCTAAAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 32 0.89
29 4 0.11
ACGTcount: A:0.24, C:0.13, G:0.34, T:0.29
Consensus pattern (28 bp):
TATGAATGTGATTGCGGCCGATAGGCCA
Found at i:82035192 original size:17 final size:18
Alignment explanation
Indices: 82035159--82035194 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
82035149 TTCTCTTTTG
82035159 AAGGGTTTCAATGAAAAC
1 AAGGGTTTCAATGAAAAC
*
82035177 AAGGTTTTCAAT-AAAAC
1 AAGGGTTTCAATGAAAAC
82035194 A
1 A
82035195 CTTTAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.47, C:0.11, G:0.17, T:0.25
Consensus pattern (18 bp):
AAGGGTTTCAATGAAAAC
Found at i:82045166 original size:26 final size:25
Alignment explanation
Indices: 82045135--82045184 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
82045125 ACTATTTTAG
*
82045135 TAAAATTTTTTTGGTTATTTGTTCC
1 TAAAAATTTTTTGGTTATTTGTTCC
82045160 TAAAAATTTTTTGGTTATTTGTTCC
1 TAAAAATTTTTTGGTTATTTGTTCC
82045185 CAAGTAGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.08, G:0.12, T:0.58
Consensus pattern (25 bp):
TAAAAATTTTTTGGTTATTTGTTCC
Found at i:82052413 original size:38 final size:38
Alignment explanation
Indices: 82052362--82052439 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
82052352 ATCTATCACA
82052362 CATGATATTTCATTATGCCAAATCAAATATACAAATTT
1 CATGATATTTCATTATGCCAAATCAAATATACAAATTT
82052400 CATGATATTTCATTATGCCAAATCAAATATACAAATTT
1 CATGATATTTCATTATGCCAAATCAAATATACAAATTT
82052438 CA
1 CA
82052440 CATTTAAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.36
Consensus pattern (38 bp):
CATGATATTTCATTATGCCAAATCAAATATACAAATTT
Found at i:82053080 original size:15 final size:15
Alignment explanation
Indices: 82053060--82053091 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
82053050 ATTTAATAAC
82053060 CACAAGTTTTATGCA
1 CACAAGTTTTATGCA
82053075 CACAAGTTTTATGCA
1 CACAAGTTTTATGCA
82053090 CA
1 CA
82053092 TACTTGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (15 bp):
CACAAGTTTTATGCA
Found at i:82064293 original size:55 final size:53
Alignment explanation
Indices: 82064103--82064357 Score: 254
Period size: 55 Copynumber: 4.8 Consensus size: 53
82064093 ACGCTGGTAC
* * * * *
82064103 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* *
82064152 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
82064205 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * *
82064260 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
*
82064313 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
82064358 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 20, Indels: 20
0.81 0.09 0.09
Matches are distributed among these distances:
49 35 0.20
52 2 0.01
53 47 0.27
54 14 0.08
55 73 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:82064294 original size:108 final size:110
Alignment explanation
Indices: 82064150--82064350 Score: 334
Period size: 108 Copynumber: 1.8 Consensus size: 110
82064140 ATCCTTTTGA
* * *
82064150 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAAACCTCACCAAT
82064213 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
82064258 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAAACCTCACCAAT
82064323 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
82064351 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
108 50 0.59
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:82066384 original size:20 final size:20
Alignment explanation
Indices: 82066359--82066397 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
82066349 AGCTAGACTC
* *
82066359 TGATACACGTTATTTTAGTG
1 TGATACACATTATGTTAGTG
82066379 TGATACACATTATGTTAGT
1 TGATACACATTATGTTAGT
82066398 CCAATAATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.10, G:0.18, T:0.44
Consensus pattern (20 bp):
TGATACACATTATGTTAGTG
Found at i:82074881 original size:40 final size:40
Alignment explanation
Indices: 82074826--82075007 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
82074816 TATTCGAATG
82074826 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
82074866 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
82074906 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
82074946 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
82074986 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
82075008 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.11
40 116 0.87
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:82083949 original size:28 final size:28
Alignment explanation
Indices: 82083918--82083987 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
82083908 GTTGATTTCG
82083918 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
* *
82083946 GCACTAAGTGTGTGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
82083974 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82083988 GACTTACTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 32 0.86
29 4 0.11
30 1 0.03
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:82088409 original size:29 final size:30
Alignment explanation
Indices: 82088352--82088409 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
82088342 CTTTTGAAAA
* * **
82088352 TATTTACAAAAAGAGGCATCTATTTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
82088382 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
82088410 AAAATACTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:82103914 original size:16 final size:16
Alignment explanation
Indices: 82103893--82103943 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
82103883 ATTAATCGAC
*
82103893 AAAAGCCGAAATGCTG
1 AAAAGCCGAAAAGCTG
* *
82103909 AAAAGCTGAAAAGTTG
1 AAAAGCCGAAAAGCTG
* *
82103925 GAATGCCGAAAAGCTG
1 AAAAGCCGAAAAGCTG
82103941 AAA
1 AAA
82103944 GTTGGTCTAC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.47, C:0.14, G:0.25, T:0.14
Consensus pattern (16 bp):
AAAAGCCGAAAAGCTG
Found at i:82103929 original size:24 final size:23
Alignment explanation
Indices: 82103902--82103948 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
82103892 CAAAAGCCGA
*
82103902 AATGCTGAAAAGCTGAAAAGTTGG
1 AATGCCGAAAAGCTG-AAAGTTGG
82103926 AATGCCGAAAAGCTGAAAGTTGG
1 AATGCCGAAAAGCTGAAAGTTGG
82103949 TCTACGGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.40, C:0.11, G:0.30, T:0.19
Consensus pattern (23 bp):
AATGCCGAAAAGCTGAAAGTTGG
Found at i:82104189 original size:17 final size:17
Alignment explanation
Indices: 82104167--82104201 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
82104157 TGCATGTGAT
82104167 TTGGGCCTAATGGGCCA
1 TTGGGCCTAATGGGCCA
*
82104184 TTGGGCCTGATGGGCCA
1 TTGGGCCTAATGGGCCA
82104201 T
1 T
82104202 ATGAATGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.23, G:0.37, T:0.26
Consensus pattern (17 bp):
TTGGGCCTAATGGGCCA
Found at i:82104235 original size:29 final size:29
Alignment explanation
Indices: 82104187--82104295 Score: 114
Period size: 29 Copynumber: 3.8 Consensus size: 29
82104177 TGGGCCATTG
82104187 GGCCTGATGGGCCATATGAATGTGAATTA
1 GGCCTGATGGGCCATATGAATGTGAATTA
* * * *
82104216 GGCTTGATGGGCCATGTGAATGTGGATTG
1 GGCCTGATGGGCCATATGAATGTGAATTA
* **
82104245 GGCCTGATGGGCCATATAAATAAG-ATTA
1 GGCCTGATGGGCCATATGAATGTGAATTA
* *
82104273 GGCC-AAGTGGGCCATATGCATGT
1 GGCCTGA-TGGGCCATATGAATGT
82104296 ATGTAGGGGT
Statistics
Matches: 64, Mismatches: 15, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
27 1 0.02
28 19 0.30
29 44 0.69
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.27
Consensus pattern (29 bp):
GGCCTGATGGGCCATATGAATGTGAATTA
Found at i:82105356 original size:17 final size:18
Alignment explanation
Indices: 82105323--82105357 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
82105313 TTTTAAGAAG
82105323 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
82105341 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
82105358 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:82109618 original size:40 final size:40
Alignment explanation
Indices: 82109569--82109704 Score: 227
Period size: 40 Copynumber: 3.4 Consensus size: 40
82109559 ATAGCAACTC
* * * *
82109569 GCACGAATGCCTTCGGGAATTAGCCCAGACATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCAGATATAATCACTA
82109609 GCACAAATGCCTTCGGGACTTAGCCCAGATATAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCAGATATAATCACTA
*
82109649 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCAGATATAATCACTA
82109689 GCACAAATGCCTTCGG
1 GCACAAATGCCTTCGG
82109705 ATCTTAGTCC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCAGATATAATCACTA
Found at i:82109711 original size:40 final size:40
Alignment explanation
Indices: 82109539--82109704 Score: 219
Period size: 40 Copynumber: 4.2 Consensus size: 40
82109529 AACCCAAGTA
* * * * *
82109539 CCTTCGGAATTTAG-CCGGATAT-AGCAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATG
* * * *
82109578 CCTTCGGGAATTAGCCCAGACATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
*
82109618 CCTTCGGGACTTAGCCCAGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
82109658 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
82109698 CCTTCGG
1 CCTTCGG
82109705 ATCTTAGTCC
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
39 12 0.11
40 100 0.88
41 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
Found at i:82112453 original size:40 final size:40
Alignment explanation
Indices: 82112346--82112531 Score: 286
Period size: 40 Copynumber: 4.7 Consensus size: 40
82112336 TTCGGATGAA
* *
82112346 AACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* *
82112385 ATTCCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTACTAT
1 A-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* *
82112425 ATCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
82112465 AACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTAT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
82112505 AACCGGGCTAAGTCCCGAAGGCATTTG
1 AACCGGGCTAAGTCCCGAAGGCATTTG
82112532 AAGCAAGTAG
Statistics
Matches: 134, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 34 0.25
40 100 0.75
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:82112554 original size:80 final size:79
Alignment explanation
Indices: 82112346--82112555 Score: 275
Period size: 80 Copynumber: 2.6 Consensus size: 79
82112336 TTCGGATGAA
* *
82112346 AACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAGACCGAAGGCAT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-TCCGGGCTAAGACCGAAGGCAC
82112409 TTGTGCGAGTTACTAT
64 TTGTGCGAGTTACTAT
* * * * *
82112425 ATCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGCAC
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAG-ACCGAAGGCAC
82112489 TTGTGCGAGTTACTAT
64 TTGTGCGAGTTACTAT
*
82112505 AACCGGGCTAAGTCCCGAAGGCATTTGAAGCAAGTAGCTATATCC-GGCTAA
1 AACCGGGCTAAGTCCCGAAGGCATTTG-TGCAAGTAGCTATATCCGGGCTAA
82112556 ATTTCGAAGG
Statistics
Matches: 114, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
79 43 0.38
80 60 0.53
81 11 0.10
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
AACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGACCGAAGGCACTT
GTGCGAGTTACTAT
Found at i:82120758 original size:39 final size:39
Alignment explanation
Indices: 82120704--82120869 Score: 208
Period size: 40 Copynumber: 4.2 Consensus size: 39
82120694 AACCCAAGTA
* * * **
82120704 CCTTCGGAATTTAG-CCGGATATAGCAACTCGCATTAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
* *
82120743 CCTTCGGGACTTAGCCTGGACATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
*
82120783 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGCACTAGCACAAATG
*
82120823 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGCACTAGCACAAATG
82120863 CCTTCGG
1 CCTTCGG
82120870 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 12 0.11
40 100 0.88
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:82120876 original size:40 final size:40
Alignment explanation
Indices: 82120739--82120869 Score: 235
Period size: 40 Copynumber: 3.3 Consensus size: 40
82120729 AACTCGCATT
* * *
82120739 AATGCCTTCGGGACTTAGCCTGGACATAGTCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACA
82120779 AATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACA
82120819 AATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACA
82120859 AATGCCTTCGG
1 AATGCCTTCGG
82120870 ATCTTAGTCC
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACA
Found at i:82124496 original size:40 final size:40
Alignment explanation
Indices: 82124447--82124689 Score: 212
Period size: 40 Copynumber: 6.1 Consensus size: 40
82124437 CGGAATTTAA
** * *
82124447 CCGGATATAGCT-ACTCGTTCAAATGCCTTCTGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAAC
* *
82124487 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * * *
82124527 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * *
82124566 CCGGA-ATTAGTAACTTGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACATAAC
* **
82124605 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAAC
* * * *
82124645 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAAC
82124685 CCGGA
1 CCGGA
82124690 CATCATTTGA
Statistics
Matches: 178, Mismatches: 18, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 70 0.39
40 94 0.53
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:82124580 original size:39 final size:39
Alignment explanation
Indices: 82124466--82124689 Score: 265
Period size: 39 Copynumber: 5.6 Consensus size: 39
82124456 GCTACTCGTT
* * *
82124466 CAAATGCCTTCTGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGGCTTAGCCCGGAAT-TAGTAACTCGCA
* *
82124506 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
* *
82124546 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
82124585 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * *
82124624 CAAATGCCTTCGGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
82124665 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
82124690 CATCATTTGA
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 76 0.47
40 76 0.47
41 10 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:82124649 original size:118 final size:120
Alignment explanation
Indices: 82124466--82124689 Score: 305
Period size: 118 Copynumber: 1.9 Consensus size: 120
82124456 GCTACTCGTT
*
82124466 CAAATGCCTTCTGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCTGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
82124531 ATTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCA
66 ATATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCA
* * **
82124585 CAAATGCCTTC-GGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCTGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
82124647 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
82124690 CATCATTTGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
117 4 0.04
118 62 0.67
119 26 0.28
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCTGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCA
Found at i:82129299 original size:29 final size:28
Alignment explanation
Indices: 82129279--82129361 Score: 103
Period size: 29 Copynumber: 2.9 Consensus size: 28
82129269 TGCATTTGAT
82129279 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAATGTG-A
* * *
82129308 TTGGGCCTGATGGGCCATATAAATGAGA
1 TTGGGCCTAATGGGCCATATGAATGTGA
* * *
82129336 TTGGGCCTAGTGGGCAATATGCATGT
1 TTGGGCCTAATGGGCCATATGAATGT
82129362 ATGTAAGGGT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 21 0.47
29 24 0.53
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.28
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATGTGA
Found at i:82131802 original size:32 final size:32
Alignment explanation
Indices: 82131733--82131802 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
82131723 TCAAAATTTC
* *
82131733 CATAAAACCAATCCATGAATATCCAATAATTC
1 CATAAAACCAATCCATGAATATCCAATAACTA
*
82131765 CATAAAACCAATCCATGAATATCCACTAACTA
1 CATAAAACCAATCCATGAATATCCAATAACTA
*
82131797 TATAAA
1 CATAAA
82131803 TTGTGTATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.49, C:0.24, G:0.03, T:0.24
Consensus pattern (32 bp):
CATAAAACCAATCCATGAATATCCAATAACTA
Found at i:82134948 original size:25 final size:25
Alignment explanation
Indices: 82134914--82134964 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
82134904 CTTGGAAAGA
82134914 TGGCCGAACCTAAGTTTTATCTCTT
1 TGGCCGAACCTAAGTTTTATCTCTT
82134939 TGGCCGAACCTAAGTTTTATCTCTT
1 TGGCCGAACCTAAGTTTTATCTCTT
82134964 T
1 T
82134965 CTTTTGTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.41
Consensus pattern (25 bp):
TGGCCGAACCTAAGTTTTATCTCTT
Found at i:82135552 original size:66 final size:66
Alignment explanation
Indices: 82135465--82135617 Score: 200
Period size: 66 Copynumber: 2.3 Consensus size: 66
82135455 GTGTGCCAGG
* * *
82135465 CCGTGTTCTAGGCCGTCTGAAAACTAAAGGGTATACTGACTTGTGTCACACGGTCAAACCCCAA-
1 CCGTGTGCTAGGCCGTGTGAAAACTAAAGGGTATACTGACTTGTGCCACACGGTCAAACCCCAAG
82135529 T
66 T
* * * **
82135530 CCCGTGTGCTAGGCCTTGTGAAAACTGAAGGGTATACTGACTTGTGCCATACGGTCATGCCCCAA
1 -CCGTGTGCTAGGCCGTGTGAAAACTAAAGGGTATACTGACTTGTGCCACACGGTCAAACCCCAA
82135595 GT
65 GT
* *
82135597 CCATGTGCTAGGTCGTGTGAA
1 CCGTGTGCTAGGCCGTGTGAA
82135618 GCTACTGACT
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
66 74 0.99
67 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (66 bp):
CCGTGTGCTAGGCCGTGTGAAAACTAAAGGGTATACTGACTTGTGCCACACGGTCAAACCCCAAG
T
Found at i:82137069 original size:37 final size:37
Alignment explanation
Indices: 82137016--82137118 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
82137006 CGAATAGTCC
*
82137016 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
82137053 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
82137090 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
82137119 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:82137317 original size:48 final size:48
Alignment explanation
Indices: 82137259--82137644 Score: 655
Period size: 48 Copynumber: 8.0 Consensus size: 48
82137249 ATATACACAC
* * *
82137259 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
82137307 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
82137355 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
82137403 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
82137451 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82137499 ATCTCATACATATTTCGCACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
82137547 ATCTCATACATATTTCGCACTAGCCATTCGGCTTTACCACATGTACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
82137595 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
82137643 AT
1 AT
82137645 ATTTATCTTG
Statistics
Matches: 324, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 324 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:82142247 original size:16 final size:16
Alignment explanation
Indices: 82142228--82142258 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82142218 CTTCTTCACT
82142228 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
82142244 TACTTACTTACTTAA
1 TACTCACTTACTTAA
82142259 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:82142264 original size:20 final size:20
Alignment explanation
Indices: 82142225--82142264 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
82142215 AAACTTCTTC
* *
82142225 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
82142245 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
82142265 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:82142616 original size:55 final size:53
Alignment explanation
Indices: 82142427--82142681 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
82142417 ACACGGGTAC
* * * *
82142427 CTTACCATTGCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * *
82142476 CTTACCATTGCCACGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* *
82142529 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* * *** *
82142584 CTTATCAATGCCATGTCTTGACATGGTATTACATGATTTTCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * * *
82142637 CCTTACCAATTGCCATGCCTTGGCATGGTCTTCCATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
82142682 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 49 0.29
54 10 0.06
55 69 0.41
56 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:82142616 original size:108 final size:110
Alignment explanation
Indices: 82142425--82142674 Score: 304
Period size: 108 Copynumber: 2.4 Consensus size: 110
82142415 ATACACGGGT
* * * * *
82142425 ACCTTACC-ATTGCCATGACTTGTCATGGTCTTACAT-GG---TAT-CCTT-TTGAAACTTACCA
1 ACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTACCA
* * *
82142483 TTGCCACGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-A
66 ATGCCACGTCTTGACATGGTATTACATGATATCCTTGCCTTA-GAA
*
82142528 A-CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTATCA
1 ACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTACCA
* * *
82142591 ATGCCATGTCTTGACATGGTATTACATGATTTTCTTGCCTTAGAA
66 ATGCCACGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAA
*
82142636 ACCTTACCAATTGCCATGCCTTGGCATGGTCTTCCATGG
1 ACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGG
82142675 TATCCTTAAA
Statistics
Matches: 124, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
102 30 0.24
103 4 0.03
106 2 0.02
107 5 0.04
108 48 0.39
109 8 0.06
110 27 0.22
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (110 bp):
ACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTACCA
ATGCCACGTCTTGACATGGTATTACATGATATCCTTGCCTTAGAA
Found at i:82162279 original size:9 final size:9
Alignment explanation
Indices: 82162265--82162371 Score: 115
Period size: 9 Copynumber: 11.6 Consensus size: 9
82162255 ATGTATTAGT
82162265 TAAGTTATG
1 TAAGTTATG
82162274 TAAGTTGTTATG
1 TAA---GTTATG
*
82162286 TACGTTATG
1 TAAGTTATG
*
82162295 TGAGTTATG
1 TAAGTTATG
*
82162304 TAAATTATG
1 TAAGTTATG
82162313 TAAGTTATG
1 TAAGTTATG
*
82162322 TGAGTTATG
1 TAAGTTATG
*
82162331 TAAGTTATA
1 TAAGTTATG
*
82162340 TGAGTTATG
1 TAAGTTATG
82162349 TAAGTTATG
1 TAAGTTATG
* *
82162358 TAATTTATT
1 TAAGTTATG
82162367 TAAGT
1 TAAGT
82162372 AATGATCAAT
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
9 72 0.90
12 8 0.10
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:82163213 original size:23 final size:23
Alignment explanation
Indices: 82163187--82163236 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
82163177 GTTCAAGTTT
82163187 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
* *
82163210 ATTTAAAGTGCTGCAATTCATAG
1 ATTTAAAGGGCTGCAATTCATAC
82163233 ATTT
1 ATTT
82163237 GATTAATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:82165778 original size:42 final size:44
Alignment explanation
Indices: 82165732--82165824 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 44
82165722 GGGAACAGAT
*
82165732 TTAGGGAAAAAAGTAT-GGG-AAAG-GGGGTATTTGGGGAAAATA
1 TTAGGGAAAAAACTATGGGGAAAAGAGGGG-ATTTGGGGAAAATA
** *
82165774 TTAGGGAAATGACTATGGGGAAAAGAGGGGATTTGGGGAAAATG
1 TTAGGGAAAAAACTATGGGGAAAAGAGGGGATTTGGGGAAAATA
82165818 TTAGGGA
1 TTAGGGA
82165825 TTTTGGGTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
42 13 0.30
43 3 0.07
44 24 0.55
45 4 0.09
ACGTcount: A:0.38, C:0.01, G:0.40, T:0.22
Consensus pattern (44 bp):
TTAGGGAAAAAACTATGGGGAAAAGAGGGGATTTGGGGAAAATA
Found at i:82166675 original size:15 final size:15
Alignment explanation
Indices: 82166652--82166683 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
82166642 AAATAATAAT
82166652 TTATATATATTTATC
1 TTATATATATTTATC
*
82166667 TTATTTATATTTATC
1 TTATATATATTTATC
82166682 TT
1 TT
82166684 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:82166719 original size:7 final size:7
Alignment explanation
Indices: 82166709--82166783 Score: 66
Period size: 7 Copynumber: 11.0 Consensus size: 7
82166699 AAATTATACT
82166709 CTAAACC
1 CTAAACC
82166716 CTAAAACC
1 CT-AAACC
*
82166724 CTAACCC
1 CTAAACC
*
82166731 CTAACCC
1 CTAAACC
*
82166738 CTAAGCC
1 CTAAACC
82166745 CTAAA-C
1 CTAAACC
*
82166751 CT-ATCC
1 CTAAACC
82166757 CTAAACC
1 CTAAACC
*
82166764 ATAAACC
1 CTAAACC
82166771 CT-AACC
1 CTAAACC
*
82166777 TTAAACC
1 CTAAACC
82166784 ATATCCCCAA
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
5 1 0.02
6 11 0.20
7 37 0.66
8 7 0.12
ACGTcount: A:0.39, C:0.43, G:0.01, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:82166773 original size:33 final size:32
Alignment explanation
Indices: 82166730--82166803 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 32
82166720 AACCCTAACC
*
82166730 CCTAACCCCTAAGCCCTAAACC-TATCCCTAAA
1 CCTAAACCCTAA-CCCTAAACCATATCCCTAAA
* *
82166762 CCATAAACCCTAACCTTAAACCATATCCCCAAA
1 CC-TAAACCCTAACCCTAAACCATATCCCTAAA
82166795 CTCTAAACC
1 C-CTAAACC
82166804 TCGAAACCGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
32 10 0.28
33 25 0.69
34 1 0.03
ACGTcount: A:0.38, C:0.42, G:0.01, T:0.19
Consensus pattern (32 bp):
CCTAAACCCTAACCCTAAACCATATCCCTAAA
Found at i:82167674 original size:155 final size:153
Alignment explanation
Indices: 82167431--82167845 Score: 485
Period size: 154 Copynumber: 2.7 Consensus size: 153
82167421 ATAATTTTTT
* * *
82167431 TTGCGGCGTTTTAATAAAAAACGCCGCTAATGCCCCTATAGCTCACCAAAAG-ACGACGTCGTTC
1 TTGCGGCG-TTT-ATAGAAAACGCCGCTAATGCCTCTATAGCTCACC-AATGCACGACGTCGTT-
** * * * *
82167495 TTCTCAAAACTTTTACGGCATTTTTAAACAACCGTCGCTAATGTTTCACCTATTGTGGCGTTTTA
62 TTCTCAAAACTTTTGTGGCGTTTTTAAACAACCGTCGCTAATGCTTCACCCATTGTGGCATTTTA
82167560 GAAATAAACGCCGCTAATTCTCGATATA
127 GAAA-AAACGCCGCTAATTCTCGATATA
*
82167588 TTGCGGCGTTTATAGAAAACGCCGCTAAAGCCTCTATAGCTCACCAATGCACGACGTCGTATTTC
1 TTGCGGCGTTTATAGAAAACGCCGCTAATGCCTCTATAGCTCACCAATGCACGACGTCGT-TTTC
* *
82167653 TCAAAACTTTTGTGGCGTTTTTAGACAACCGTCGCTAATGCTTCACCCATTGTGGCATTTTATAA
65 TCAAAACTTTTGTGGCGTTTTTAAACAACCGTCGCTAATGCTTCACCCATTGTGGCATTTTAGAA
* *
82167718 AAAATGCTGCTAATTCTCGATATA
130 AAAACGCCGCTAATTCTCGATATA
* * * * * * * * * *
82167742 TTGTGGCGTTT-TCAGGAAGCACCGCTAATGCCTATATAGTTGAGCAATACACGGCGTCGTTTTC
1 TTGCGGCGTTTAT-AGAAAACGCCGCTAATGCCTCTATAGCTCACCAATGCACGACGTCGTTTT-
* * *
82167806 CTCAACACTTTTGTGGTGTTTTTACAA-AACTGTCGCTAAT
64 CTCAAAACTTTTGTGGCGTTTTTA-AACAACCGTCGCTAAT
82167846 AGTCCCCTTT
Statistics
Matches: 224, Mismatches: 29, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
153 4 0.02
154 105 0.47
155 103 0.46
156 4 0.02
157 8 0.04
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (153 bp):
TTGCGGCGTTTATAGAAAACGCCGCTAATGCCTCTATAGCTCACCAATGCACGACGTCGTTTTCT
CAAAACTTTTGTGGCGTTTTTAAACAACCGTCGCTAATGCTTCACCCATTGTGGCATTTTAGAAA
AAACGCCGCTAATTCTCGATATA
Found at i:82167817 original size:154 final size:154
Alignment explanation
Indices: 82167431--82167845 Score: 467
Period size: 155 Copynumber: 2.7 Consensus size: 154
82167421 ATAATTTTTT
* * * ** * *
82167431 TTGCGGCGTTTTAATAAAAAACGCCGCTAATGCCCCTATAGCTCACCAAAAGACGACGTCGTTCT
1 TTGCGGCG-TTT-ATAGAAAACACCGCTAAAGCCTATATAGCTCACCAATACACGACGTCGTT-T
** * * * *
82167496 TCTCAAAACTTTTACGGCATTTTTAAACAACCGTCGCTAATGTTTCACCTATTGTGGCGTTTTAG
63 TCTCAAAACTTTTGTGGCGTTTTTAAACAACCGTCGCTAATGCTTCACCCATTGTGGCATTTTAG
82167561 AAATAAACGCCGCTAATTCTCGATATA
128 AAATAAACGCCGCTAATTCTCGATATA
* * *
82167588 TTGCGGCGTTTATAGAAAACGCCGCTAAAGCCTCTATAGCTCACCAATGCACGACGTCGTATTTC
1 TTGCGGCGTTTATAGAAAACACCGCTAAAGCCTATATAGCTCACCAATACACGACGTCGT-TTTC
* *
82167653 TCAAAACTTTTGTGGCGTTTTTAGACAACCGTCGCTAATGCTTCACCCATTGTGGCATTTTATAA
65 TCAAAACTTTTGTGGCGTTTTTAAACAACCGTCGCTAATGCTTCACCCATTGTGGCATTTTAGAA
* *
82167718 A-AAATGCTGCTAATTCTCGATATA
130 ATAAACGCCGCTAATTCTCGATATA
* * * * * * * *
82167742 TTGTGGCGTTT-TCAGGAAGCACCGCTAATGCCTATATAGTTGAGCAATACACGGCGTCGTTTTC
1 TTGCGGCGTTTAT-AGAAAACACCGCTAAAGCCTATATAGCTCACCAATACACGACGTCGTTTT-
* * *
82167806 CTCAACACTTTTGTGGTGTTTTTACAA-AACTGTCGCTAAT
64 CTCAAAACTTTTGTGGCGTTTTTA-AACAACCGTCGCTAAT
82167846 AGTCCCCTTT
Statistics
Matches: 223, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
153 4 0.02
154 102 0.46
155 105 0.47
156 4 0.02
157 8 0.04
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (154 bp):
TTGCGGCGTTTATAGAAAACACCGCTAAAGCCTATATAGCTCACCAATACACGACGTCGTTTTCT
CAAAACTTTTGTGGCGTTTTTAAACAACCGTCGCTAATGCTTCACCCATTGTGGCATTTTAGAAA
TAAACGCCGCTAATTCTCGATATA
Found at i:82173816 original size:16 final size:16
Alignment explanation
Indices: 82173795--82173827 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
82173785 TTGAAATGTG
82173795 CATGCTCAATTTAGAT
1 CATGCTCAATTTAGAT
82173811 CATGCTCAATTTAGAT
1 CATGCTCAATTTAGAT
82173827 C
1 C
82173828 TTAACCCGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.36
Consensus pattern (16 bp):
CATGCTCAATTTAGAT
Done.