Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 258 of 325
Found at i:82177807 original size:18 final size:18
Alignment explanation
Indices: 82177784--82177820 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
82177774 GAAAAAGAAA
82177784 GATGCTATTTGGATTGTT
1 GATGCTATTTGGATTGTT
*
82177802 GATGCTATTTGGGTTGTT
1 GATGCTATTTGGATTGTT
82177820 G
1 G
82177821 TTGATCGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.14, C:0.05, G:0.32, T:0.49
Consensus pattern (18 bp):
GATGCTATTTGGATTGTT
Found at i:82179984 original size:638 final size:638
Alignment explanation
Indices: 82178767--82180045 Score: 2378
Period size: 638 Copynumber: 2.0 Consensus size: 638
82178757 GAGGAAGCTA
*
82178767 TGAGAATACAGTACCCTAACCTATTCACTGGTAAGATTTTCGGGGACGAAAATCCTTGAGGGAGA
1 TGAGAATACAGTACCCTAACCTATTCACTGGTAAGATTTTCGGGGACGAAAATCCTTAAGGGAGA
*
82178832 GAGTTGTAATAACCCGTTTTTAGTCAAATTAAAATAGTGGTTTTGGAACCACAAATCTGAGGTTG
66 GAGTTGTAATAACCCATTTTTAGTCAAATTAAAATAGTGGTTTTGGAACCACAAATCTGAGGTTG
*
82178897 AAATATTTATTTTATTATTATTTTAAGATATATAGGATGAATATGTGATTGTGTGAAAATTTCGT
131 AAATATTTATTTTATTATTATTTTAAGATATATAGCATGAATATGTGATTGTGTGAAAATTTCGT
*
82178962 TAAGAAATTTTGTCATTTGAATGGTTAATTTTATAAAAAAGACTAAATCGCGTAAACAGTAAAAG
196 TAAGAAATTTTGTCATTTGAATGGTTAATTTTATAAAAAAAACTAAATCGCGTAAACAGTAAAAG
* *
82179027 TGGAGTTCTAATAGCTAAAGGTGTCTAATAGCTATAGAACCTTAAATTTAAGGTCCTTATGTGGT
261 TGGAATTCTAATAGCTAAAGGTGTCTAATAGCTATAGAACCTTAAATTTAAGGTCCTTATGCGGT
82179092 AACCATTTTTAGAGTTAGTGGAAAAAGATGGGCATAGAAAAATGAATTTTAATGGTTTATATTAA
326 AACCATTTTTAGAGTTAGTGGAAAAAGATGGGCATAGAAAAATGAATTTTAATGGTTTATATTAA
82179157 AGGTTAATATTGTAATTTGGTTATTTAAGTATAATAAACAAAATAAAATCAAAATTTTGTTGGCT
391 AGGTTAATATTGTAATTTGGTTATTTAAGTATAATAAACAAAATAAAATCAAAATTTTGTTGGCT
*
82179222 ATCATTTTCCTAGCCAATTTTCAGCAAAAGAAAGAACCATTTTAGGGTTTGAAATTTGAAAACTT
456 ATCATTTTCCTAGCCAATTTTCAACAAAAGAAAGAACCATTTTAGGGTTTGAAATTTGAAAACTT
*
82179287 CAATCTTGGCTATTAAGGTACAATTTTTGTCCTGTTTTTAATGATTTCTATGTTTTTGAGATCGT
521 CAATCTTGGCTATTAAGGTACAATTTTTGTCCTGTTTTTAATGATTTCAATGTTTTTGAGATCGT
82179352 TGCAACTAGTACTAACTAGCCCAAGGACTAATTTGTAAAACTGTTATAGATTT
586 TGCAACTAGTACTAACTAGCCCAAGGACTAATTTGTAAAACTGTTATAGATTT
* *
82179405 TGAGAATACAGTACCCTAACCTATTCACTGTTAAGATTTTCGGGGACGAAAATCCTTAAGGGGGA
1 TGAGAATACAGTACCCTAACCTATTCACTGGTAAGATTTTCGGGGACGAAAATCCTTAAGGGAGA
* * *
82179470 GAGTTGTTATAAGCCATTTTTAGTCAAATTGAAATAGTGGTTTTGGAACCACAAATCTGAGGTTG
66 GAGTTGTAATAACCCATTTTTAGTCAAATTAAAATAGTGGTTTTGGAACCACAAATCTGAGGTTG
*
82179535 AAATATTTATTTTATTATTATTTTAAGATCTATAGCATGAATATGTGATTGTGTGAAAATTTCGT
131 AAATATTTATTTTATTATTATTTTAAGATATATAGCATGAATATGTGATTGTGTGAAAATTTCGT
82179600 TAAGAAATTTTGTCATTTGAATGGTTAATTTTATAAAAAAAACTAAATCGCGTAAACAGTAAAAG
196 TAAGAAATTTTGTCATTTGAATGGTTAATTTTATAAAAAAAACTAAATCGCGTAAACAGTAAAAG
*
82179665 TGGAATTCTAATAGCTAAAGGTGTCTAATAGTTATAGAACCTTAAATTTAAGGTCCTTATGCGGT
261 TGGAATTCTAATAGCTAAAGGTGTCTAATAGCTATAGAACCTTAAATTTAAGGTCCTTATGCGGT
* *
82179730 AACCATTTTTAGAGTTAGTGGACAAAGATGGGCATGGAAAAATGAATTTTAATGGTTTATATTAA
326 AACCATTTTTAGAGTTAGTGGAAAAAGATGGGCATAGAAAAATGAATTTTAATGGTTTATATTAA
82179795 AGGTTAATATTGTAATTTGGTTATTTAAGTATAATAAACAAAATAAAATCAAAATTTTGTTGGCT
391 AGGTTAATATTGTAATTTGGTTATTTAAGTATAATAAACAAAATAAAATCAAAATTTTGTTGGCT
*
82179860 ATCATTTTCCTAGCCGATTTTCAACAAAAGAAAGAACCATTTTAGGGTTTGAAATTTGAAAACTT
456 ATCATTTTCCTAGCCAATTTTCAACAAAAGAAAGAACCATTTTAGGGTTTGAAATTTGAAAACTT
82179925 CAATCTTGGCTATTAAGGTACAATTTTTGTCCTGTTTTTAATGATTTCAATGTTTTTGAGATCGT
521 CAATCTTGGCTATTAAGGTACAATTTTTGTCCTGTTTTTAATGATTTCAATGTTTTTGAGATCGT
* *
82179990 TGCAGCTAGTACTAACTAGCCCAATGACTAATTTGTAAAACTGTTATAGATTT
586 TGCAACTAGTACTAACTAGCCCAAGGACTAATTTGTAAAACTGTTATAGATTT
82180043 TGA
1 TGA
82180046 AAGTTGCCAT
Statistics
Matches: 621, Mismatches: 20, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
638 621 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.37
Consensus pattern (638 bp):
TGAGAATACAGTACCCTAACCTATTCACTGGTAAGATTTTCGGGGACGAAAATCCTTAAGGGAGA
GAGTTGTAATAACCCATTTTTAGTCAAATTAAAATAGTGGTTTTGGAACCACAAATCTGAGGTTG
AAATATTTATTTTATTATTATTTTAAGATATATAGCATGAATATGTGATTGTGTGAAAATTTCGT
TAAGAAATTTTGTCATTTGAATGGTTAATTTTATAAAAAAAACTAAATCGCGTAAACAGTAAAAG
TGGAATTCTAATAGCTAAAGGTGTCTAATAGCTATAGAACCTTAAATTTAAGGTCCTTATGCGGT
AACCATTTTTAGAGTTAGTGGAAAAAGATGGGCATAGAAAAATGAATTTTAATGGTTTATATTAA
AGGTTAATATTGTAATTTGGTTATTTAAGTATAATAAACAAAATAAAATCAAAATTTTGTTGGCT
ATCATTTTCCTAGCCAATTTTCAACAAAAGAAAGAACCATTTTAGGGTTTGAAATTTGAAAACTT
CAATCTTGGCTATTAAGGTACAATTTTTGTCCTGTTTTTAATGATTTCAATGTTTTTGAGATCGT
TGCAACTAGTACTAACTAGCCCAAGGACTAATTTGTAAAACTGTTATAGATTT
Found at i:82186289 original size:29 final size:29
Alignment explanation
Indices: 82186233--82186352 Score: 161
Period size: 29 Copynumber: 4.2 Consensus size: 29
82186223 TACATACGTG
* * *
82186233 CATATTGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCACATT
*
82186261 CATATGGCCCATTAGGGCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
* *
82186290 CGTATGGACCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
* *
82186319 CATATGGCCTATTAGGCCCATATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
82186348 CATAT
1 CATAT
82186353 AAATGCTTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 16 0.20
29 64 0.80
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCACATT
Found at i:82186583 original size:16 final size:16
Alignment explanation
Indices: 82186562--82186594 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
82186552 AGCCAAACTC
*
82186562 TCGGCTTTTCGGCATT
1 TCGGCTTTTCAGCATT
82186578 TCGGCTTTTCAGCATT
1 TCGGCTTTTCAGCATT
82186594 T
1 T
82186595 TGGGATTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.45
Consensus pattern (16 bp):
TCGGCTTTTCAGCATT
Found at i:82189252 original size:13 final size:13
Alignment explanation
Indices: 82189234--82189258 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82189224 TTAGCCGAAT
82189234 ACAAATATGTTTA
1 ACAAATATGTTTA
82189247 ACAAATATGTTT
1 ACAAATATGTTT
82189259 TAGCAGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (13 bp):
ACAAATATGTTTA
Found at i:82191632 original size:24 final size:24
Alignment explanation
Indices: 82191585--82191656 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 24
82191575 GCTTTATCAT
** *
82191585 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCCTTTTTTA
*
82191610 ATAACTGGGGCAAAGCCTTTTTTG
1 ATAACTGGGGCAAAGCCTTTTTTA
*
82191634 ATAAGCTGGGGCAAAGCCCTTTT
1 ATAA-CTGGGGCAAAGCCTTTTT
82191657 CGGTAAACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
24 16 0.39
25 25 0.61
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCTTTTTTA
Found at i:82191682 original size:25 final size:25
Alignment explanation
Indices: 82191612--82191706 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
82191602 CTCTTTTAAT
* * * *
82191612 AACTGGGGCAAAGCCTTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGGTA
* *
82191637 AGCTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
82191662 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
*
82191687 AATTAGGGCATAA-CCCTTTT
1 AACTAGGGCA-AAGCCCTTTT
82191707 AGGACTTCCT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
25 60 0.97
26 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGGTA
Found at i:82192671 original size:27 final size:27
Alignment explanation
Indices: 82192640--82192763 Score: 103
Period size: 27 Copynumber: 4.6 Consensus size: 27
82192630 CTACAAACCA
* **
82192640 AGGGTATTTCTGTAATTTTGTAAATCAG
1 AGGGTATTTCGGTAATTTTACAAAT-AG
*
82192668 -GGGTATTT-GGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATAG
* *
82192693 AGGGTATTTCGGTAATTTCACAAACCAG
1 AGGGTATTTCGGTAATTTTACAAA-TAG
* **
82192721 -TGGTATTTTAGTAATTTTACAAACTAG
1 AGGGTATTTCGGTAATTTTACAAA-TAG
*
82192748 -GGGTATTTTGGTAATT
1 AGGGTATTTCGGTAATT
82192764 CTACCCTATA
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.01
26 20 0.25
27 57 0.72
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATAG
Found at i:82192697 original size:53 final size:54
Alignment explanation
Indices: 82192640--82192803 Score: 149
Period size: 54 Copynumber: 3.1 Consensus size: 54
82192630 CTACAAACCA
* *** * *
82192640 AGGGTATTTCTGTAATTTTGTAAATCAGGGGTA-TTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAATTG
* *
82192693 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTAGTAATTTTACAAACT-
1 AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAATTG
* ** * *
82192746 AGGGGTATTTTGGTAA-TTCTACCCTA-TAGGGGTATTTTAGTAATTTCAC-AATTG
1 A-GGGTATTTCGGTAATTTC-A-CAAACCAGGGGTATTTTAGTAATTTTACAAATTG
82192800 AGGG
1 AGGG
82192804 AAAAACGGTA
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
53 37 0.41
54 52 0.57
55 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAATTG
Found at i:82192803 original size:27 final size:26
Alignment explanation
Indices: 82192666--82192803 Score: 93
Period size: 27 Copynumber: 5.2 Consensus size: 26
82192656 TTTGTAAATC
*
82192666 AGGGGTA-TTTGGTAATTTTACAAATT
1 AGGGGTATTTTGGTAATTTCAC-AATT
* **
82192692 -GAGGGTATTTCGGTAATTTCACAAACC
1 AG-GGGTATTTTGGTAATTTCAC-AATT
* * * *
82192719 AGTGGTATTTTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTCAC-AATT
**
82192746 AGGGGTATTTTGGTAA-TTCTACCCTAT
1 AGGGGTATTTTGGTAATTTC-ACAAT-T
*
82192773 AGGGGTATTTTAGTAATTTCACAATT
1 AGGGGTATTTTGGTAATTTCACAATT
82192799 GAGGG
1 -AGGG
82192804 AAAAACGGTA
Statistics
Matches: 87, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
25 1 0.01
26 8 0.09
27 74 0.85
28 4 0.05
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.38
Consensus pattern (26 bp):
AGGGGTATTTTGGTAATTTCACAATT
Found at i:82192878 original size:27 final size:27
Alignment explanation
Indices: 82192795--82192878 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
82192785 GTAATTTCAC
* * *
82192795 AATTGAGGGAAAAACGGTAATTCTGTA
1 AATTAAGGGTAAAACAGTAATTCTGTA
*
82192822 AAGTAAGGGTAAAACAGTAATTCTGTA
1 AATTAAGGGTAAAACAGTAATTCTGTA
* *
82192849 AATTAAGGGTAAAATAGTAATTCTATA
1 AATTAAGGGTAAAACAGTAATTCTGTA
82192876 AAT
1 AAT
82192879 CGAGGGTACT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.45, C:0.06, G:0.20, T:0.29
Consensus pattern (27 bp):
AATTAAGGGTAAAACAGTAATTCTGTA
Found at i:82195322 original size:30 final size:31
Alignment explanation
Indices: 82195250--82195325 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
82195240 CGATATATAA
*
82195250 TGGGACGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
82195281 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
*
82195312 T-GGTCGAAGCCTTT
1 TGGGCCGAAGCCTTT
82195326 ATTGTAAGCG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
30 12 0.28
31 31 0.72
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAC
Found at i:82195565 original size:24 final size:25
Alignment explanation
Indices: 82195538--82195615 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
82195528 GCTTAGCCTC
82195538 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
82195562 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
* * *
82195587 TTTCAGTAAACTGGGGCATAG-CCT
1 TTTTAATAAACTGGGGCAAAGCCCT
82195611 TTTTA
1 TTTTA
82195616 TCACTTCCTC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 13 0.28
25 34 0.72
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:82196082 original size:17 final size:17
Alignment explanation
Indices: 82196060--82196102 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
82196050 TTTACCCAAA
82196060 TGGGCCCGAAAGCCCAT
1 TGGGCCCGAAAGCCCAT
82196077 TGGGCCCGAAAGCCCAT
1 TGGGCCCGAAAGCCCAT
82196094 TGGGCCCGA
1 TGGGCCCGA
82196103 TTCTAGCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.21, C:0.35, G:0.33, T:0.12
Consensus pattern (17 bp):
TGGGCCCGAAAGCCCAT
Found at i:82196503 original size:27 final size:27
Alignment explanation
Indices: 82196442--82196505 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
82196432 GGCATATTCA
82196442 TCATTTTACCATACAGGGGAATTACGG
1 TCATTTTACCATACAGGGGAATTACGG
* * **
82196469 TCACTTTACCCTACAGGGGCTTTACGG
1 TCATTTTACCATACAGGGGAATTACGG
*
82196496 TCTTTTTACC
1 TCATTTTACC
82196506 TATTAATGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGAATTACGG
Found at i:82196589 original size:27 final size:27
Alignment explanation
Indices: 82196559--82196666 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
82196549 GTAAATCTAC
82196559 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
82196586 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
82196612 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
82196642 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
82196667 ACCAATTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.60
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:82196679 original size:27 final size:27
Alignment explanation
Indices: 82196649--82196787 Score: 104
Period size: 27 Copynumber: 5.2 Consensus size: 27
82196639 TGTAAATCAG
*
82196649 GGGTATTTTGGTAATTTTACCAATTGA
1 GGGTATTTTGGTAATTTTACCAATCGA
* * * * *
82196676 GGGTATTTTGATAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACCAATCGA
* * * *
82196703 TGGTATATTGGTAATTTTA-CAAACTA
1 GGGTATTTTGGTAATTTTACCAATCGA
* * *
82196729 GGGGTATTTTGGTAATTCTACCTTATAG-
1 -GGGTATTTTGGTAATTTTACC-AATCGA
* *
82196757 GGGTATTTTAGTAATTTCA-CAATCGA
1 GGGTATTTTGGTAATTTTACCAATCGA
82196783 GGGTA
1 GGGTA
82196788 AAACGGTAAT
Statistics
Matches: 83, Mismatches: 25, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
25 3 0.04
26 10 0.12
27 68 0.82
28 1 0.01
29 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACCAATCGA
Found at i:82196818 original size:27 final size:27
Alignment explanation
Indices: 82196777--82196868 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
82196767 GTAATTTCAC
* * *
82196777 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
** *
82196804 AATTGAGTGTAAAACAGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
82196831 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
82196858 AATCGAGGGTA
1 AATCAAGGGTA
82196869 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCAAGGGTAAAACAGTAATTCTGTA
Found at i:82211799 original size:12 final size:12
Alignment explanation
Indices: 82211782--82211806 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82211772 TTTTGAATGA
82211782 ATTTGATTAAAT
1 ATTTGATTAAAT
82211794 ATTTGATTAAAT
1 ATTTGATTAAAT
82211806 A
1 A
82211807 AGTTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATTTGATTAAAT
Found at i:82217189 original size:27 final size:26
Alignment explanation
Indices: 82217159--82217246 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 26
82217149 TACCTTTTGG
82217159 GGGTATGTTAGTCATTTTACACTACAA
1 GGGTAT-TTAGTCATTTTACACTACAA
* *
82217186 GGGTATTTTGATAATTTTACACTACAA
1 GGGTATTTAG-TCATTTTACACTACAA
* *
82217213 GGATATTTCAG-CAATTTTACATTACAA
1 GGGTATTT-AGTC-ATTTTACACTACAA
82217240 GGGTATT
1 GGGTATT
82217247 CCGATAATTT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
26 3 0.06
27 47 0.92
28 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (26 bp):
GGGTATTTAGTCATTTTACACTACAA
Found at i:82217255 original size:27 final size:27
Alignment explanation
Indices: 82217172--82217341 Score: 125
Period size: 27 Copynumber: 6.3 Consensus size: 27
82217162 TATGTTAGTC
*
82217172 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTCGATA
* *
82217199 ATTTTACACTACAAGGATATTTC-AGCA
1 ATTTTACACTACAAGGGTATTTCGA-TA
* *
82217226 ATTTTACATTACAAGGGTATTCCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
* * *
82217253 ATTTTACA-AATCGAGGGTGTTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCGATA
* * *
82217280 ATTTTA-A-AAAAAGAGCGTATTTCGGTA
1 ATTTTACACTACAAG-G-GTATTTCGATA
** * *
82217307 ATTTTA-AAAATCGAGGGTATTTTGATA
1 ATTTTACACTA-CAAGGGTATTTCGATA
82217334 ATTTTACA
1 ATTTTACA
82217342 AATTGAGGGT
Statistics
Matches: 116, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
25 2 0.02
26 6 0.05
27 101 0.87
28 5 0.04
29 2 0.02
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:82217283 original size:54 final size:53
Alignment explanation
Indices: 82217172--82217471 Score: 171
Period size: 54 Copynumber: 5.6 Consensus size: 53
82217162 TATGTTAGTC
* * * * *
82217172 ATTTTACACTACAAGGGTATTTTGATAATTTTAC-ACTACAAGGATATTTC-AGCA
1 ATTTTACA-TACAAGGGTATTTCGATAATTTTACAAAT-CGAGGGTATTTCGA-TA
* *
82217226 ATTTTACATTACAAGGGTATTCCGATAATTTTACAAATCGAGGGTGTTTCGATA
1 ATTTTACA-TACAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATA
* * * * *
82217280 ATTTTA-AAAAAAGAGCGTATTTCGGTAATTTTAAAAATCGAGGGTATTTTGATA
1 ATTTTACATACAAG-G-GTATTTCGATAATTTTACAAATCGAGGGTATTTCGATA
* ** * * * * * * *
82217334 ATTTTACAAATTGAGGGTGTTTTGGTAATTTCAAAAATCGGGGGTATTTTGATA
1 ATTTTACATA-CAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATA
* ** * * * * *
82217388 ATTTTACAAATTGAGGGTATTT-TAGTAATTTCAC-AACCGAGGGTATTTTGGTA
1 ATTTTACATA-CAAGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCGATA
* *
82217441 GTTTTACAAATCAAGGGTATTTC-AGTAATTT
1 ATTTTACATA-CAAGGGTATTTCGA-TAATTT
82217472 CTCTTTATCA
Statistics
Matches: 207, Mismatches: 31, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
52 4 0.02
53 45 0.22
54 149 0.72
55 7 0.03
56 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (53 bp):
ATTTTACATACAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATA
Found at i:82217301 original size:81 final size:81
Alignment explanation
Indices: 82217216--82217370 Score: 195
Period size: 81 Copynumber: 1.9 Consensus size: 81
82217206 ACTACAAGGA
* *
82217216 TATTTCAGCAATTTT-ACATTACAAGGGTATTCCGATAATTTTACAAATCGAGGGTGTTTCGATA
1 TATTTCAGCAATTTTAAAAAT-CAAGGGTATTCCGATAATTTTACAAATCGAGGGTGTTTCGATA
*
82217280 ATTTTAAAAAAAGAGCG
65 ATTTCAAAAAAAGAGCG
* * * ** * * *
82217297 TATTTCGGTAATTTTAAAAATCGAGGGTATTTTGATAATTTTACAAATTGAGGGTGTTTTGGTAA
1 TATTTCAGCAATTTTAAAAATCAAGGGTATTCCGATAATTTTACAAATCGAGGGTGTTTCGATAA
82217362 TTTCAAAAA
66 TTTCAAAAA
82217371 TCGGGGGTAT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
81 59 0.95
82 3 0.05
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (81 bp):
TATTTCAGCAATTTTAAAAATCAAGGGTATTCCGATAATTTTACAAATCGAGGGTGTTTCGATAA
TTTCAAAAAAAGAGCG
Found at i:82217344 original size:27 final size:27
Alignment explanation
Indices: 82217239--82217462 Score: 218
Period size: 27 Copynumber: 8.3 Consensus size: 27
82217229 TTACATTACA
**
82217239 AGGGTATTCCGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* * * **
82217266 AGGGTGTTTCGATAATTTTAAAAAAAG
1 AGGGTATTTTGATAATTTTACAAATCG
* * * *
82217293 AGCGTATTTCGGTAATTTTAAAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
*
82217320 AGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTTGATAATTTTACAAATCG
* * * *
82217347 AGGGTGTTTTGGTAATTTCAAAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
82217374 GGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
82217401 AGGGTATTTT-AGTAATTTCAC-AACCG
1 AGGGTATTTTGA-TAATTTTACAAATCG
* * *
82217427 AGGGTATTTTGGTAGTTTTACAAATCA
1 AGGGTATTTTGATAATTTTACAAATCG
82217454 AGGGTATTT
1 AGGGTATTT
82217463 CAGTAATTTC
Statistics
Matches: 159, Mismatches: 35, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
26 21 0.13
27 138 0.87
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGATAATTTTACAAATCG
Found at i:82217381 original size:81 final size:81
Alignment explanation
Indices: 82217239--82217471 Score: 254
Period size: 81 Copynumber: 2.9 Consensus size: 81
82217229 TTACATTACA
** * * ** *
82217239 AGGGTATTCCGATAATTTTACAAATCGAGGGTGTTTCGATAATTTTAAAAAAAGAGCGTATTTCG
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTTGGTAATTTTAAAAATCGAGGGTATTTCG
82217304 GTAATTTTAAAAATCG
66 GTAATTTTAAAAATCG
* * * *
82217320 AGGGTATTTTGATAATTTTACAAATTGAGGGTGTTTTGGTAATTTCAAAAATCGGGGGTATTTTG
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTTGGTAATTTTAAAAATCGAGGGTATTTCG
* * *
82217385 ATAATTTTACAAATTG
66 GTAATTTTAAAAATCG
* * * * * *
82217401 AGGGTATTTT-AGTAATTTCAC-AACCGAGGGTATTTTGGTAGTTTTACAAATCAAGGGTATTTC
1 AGGGTATTTTGA-TAATTTTACAAATCGAGGGTGTTTTGGTAATTTTAAAAATCGAGGGTATTTC
*
82217464 AGTAATTT
65 GGTAATTT
82217472 CTCTTTATCA
Statistics
Matches: 125, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
80 40 0.32
81 85 0.68
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTTGGTAATTTTAAAAATCGAGGGTATTTCG
GTAATTTTAAAAATCG
Found at i:82219861 original size:93 final size:93
Alignment explanation
Indices: 82219702--82219872 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
82219692 GCCCATAAGT
* * *
82219702 GAACTCGGACTCCACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
82219767 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
82219795 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
82219860 CGAGTTCGGATGC
66 CGAGCTCGGATGC
82219873 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:82219869 original size:46 final size:46
Alignment explanation
Indices: 82219694--82219869 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
82219684 TGTAACCCGC
* * * *
82219694 CCATAAGTGAACTCGGACTCCACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
82219740 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
82219790 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
82219833 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
82219870 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 63 0.58
47 27 0.25
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:82223375 original size:27 final size:27
Alignment explanation
Indices: 82223347--82223435 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
82223337 CAAAACAGTC
* * *
82223347 ATTTTACCCTACAAGGGTATGTCAATC
1 ATTTTACACTACAAGGGTATTTCAATA
* *
82223374 ATTTTACACTATAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCAATA
82223401 ATTTTACACTACAAGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATTTCAATA
82223428 ATTTTACA
1 ATTTTACA
82223436 AATCGGGGGT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAATA
Found at i:82223445 original size:27 final size:27
Alignment explanation
Indices: 82223414--82223647 Score: 297
Period size: 27 Copynumber: 8.7 Consensus size: 27
82223404 TTACACTACA
* *
82223414 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
* * * *
82223441 GGGGTGTTTTTGTAATTTTACAAATTG
1 AGGGTATTTTAGTAATTTTACAAATCG
*
82223468 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
*
82223495 AGGGTATTTTAGTAATTTTAGAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
*
82223522 AGGGTATTTTAATAATTTTACAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
* * *
82223549 AGGGTGTTTTGGTAATTTTATAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
** * *
82223576 AGGGCGTTTTAATAATTTCACAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
* **
82223603 GGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCG
82223630 AGGGTATTTTAGTAATTT
1 AGGGTATTTTAGTAATTT
82223648 CTTTTTATCA
Statistics
Matches: 174, Mismatches: 33, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 174 1.00
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAATCG
Found at i:82223472 original size:81 final size:81
Alignment explanation
Indices: 82223387--82223647 Score: 326
Period size: 81 Copynumber: 3.2 Consensus size: 81
82223377 TTACACTATA
* * * * * *
82223387 AGGGTATTTCGATAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATCGGGGGTGTTTT
1 AGGGTATTTTGGTAATTTTACAAAT-CGAGGGTATTTTAATAATTTTACAAATCGGGGGTATTTT
* *
82223451 TGTAATTTTACAAATTG
65 AGTAATTTTACAAATCG
* * *
82223468 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAGAAATCGAGGGTATTTTA
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAATAATTTTACAAATCGGGGGTATTTTA
*
82223533 ATAATTTTACAAATCG
66 GTAATTTTACAAATCG
* * ** * **
82223549 AGGGTGTTTTGGTAATTTTATAAATCGAGGGCGTTTTAATAATTTCACAAATCGGGGGTATTTCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAATAATTTTACAAATCGGGGGTATTTTA
82223614 GTAATTTTACAAATCG
66 GTAATTTTACAAATCG
*
82223630 AGGGTATTTTAGTAATTT
1 AGGGTATTTTGGTAATTT
82223648 CTTTTTATCA
Statistics
Matches: 154, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
81 152 0.99
82 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAATAATTTTACAAATCGGGGGTATTTTA
GTAATTTTACAAATCG
Found at i:82223648 original size:54 final size:54
Alignment explanation
Indices: 82223387--82223647 Score: 317
Period size: 54 Copynumber: 4.8 Consensus size: 54
82223377 TTACACTATA
* * * * *
82223387 AGGGTATTTCGATAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAAT-CGAGGGTATTTTAATAATTTTACAAATCG
* * * * **
82223441 GGGGTGTTTTTGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAATAATTTTACAAATCG
* *
82223495 AGGGTATTTTAGTAATTTTAGAAATCGAGGGTATTTTAATAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAATAATTTTACAAATCG
* * ** *
82223549 AGGGTGTTTTGGTAATTTTATAAATCGAGGGCGTTTTAATAATTTCACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAATAATTTTACAAATCG
* * *
82223603 GGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTT
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAATAATTT
82223648 CTTTTTATCA
Statistics
Matches: 175, Mismatches: 31, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
54 173 0.99
55 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAATAATTTTACAAATCG
Found at i:82224006 original size:28 final size:28
Alignment explanation
Indices: 82223964--82224027 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
82223954 TGGCCCTTTT
*
82223964 AGGCCCAATCTCATTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
82223992 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
82224020 AAGCCCAA
1 AGGCCCAA
82224028 CTACTTCCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.30, C:0.38, G:0.14, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:82227058 original size:18 final size:18
Alignment explanation
Indices: 82227031--82227067 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
82227021 AACCAGCCCG
82227031 ATACGCTCTATAA-TCTC
1 ATACGCTCTATAACTCTC
82227048 ATACAGCTCTATAACTCTC
1 ATAC-GCTCTATAACTCTC
82227067 A
1 A
82227068 GACTCAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 9 0.50
19 5 0.28
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.32
Consensus pattern (18 bp):
ATACGCTCTATAACTCTC
Found at i:82228679 original size:30 final size:29
Alignment explanation
Indices: 82228634--82228699 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 29
82228624 CTCAAGTAGT
*
82228634 CAAAGCTAGTTAAATCGTACACTTACTGC
1 CAAAGCTAGTTAAATCGAACACTTACTGC
*
82228663 CAAAGCTAGTTTAAATCGAACACTTAGTGC
1 CAAAGCTAG-TTAAATCGAACACTTACTGC
82228693 CAAAGCT
1 CAAAGCT
82228700 TTCGAATCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (29 bp):
CAAAGCTAGTTAAATCGAACACTTACTGC
Found at i:82229451 original size:24 final size:24
Alignment explanation
Indices: 82229376--82229452 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
82229366 AAGTCTGTCA
*
82229376 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
82229400 GGAAAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
82229424 GGAGAGGATTTAGCAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
82229448 GGAGA
1 GGAGA
82229453 ACAGTGTTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.34, C:0.04, G:0.40, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:82230904 original size:27 final size:26
Alignment explanation
Indices: 82230862--82230966 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 26
82230852 AGGAAGCGTC
*
82230862 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* * *
82230889 CTGGTGGCTCTACCACGTATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
82230916 CTGGTGGCTCTGCCACGATTATCT-ATT
1 CTGGTGGCTCTGCCAC-ATTATCTGA-T
* *
82230943 CTGGTGACTCTGTCACATTATCTG
1 CTGGTGGCTCTGCCACATTATCTG
82230967 TTATGGCAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 8 0.12
27 56 0.86
28 1 0.02
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:82243703 original size:40 final size:40
Alignment explanation
Indices: 82243621--82243722 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
82243611 TATTCGGATG
* * *
82243621 ATAATCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAATCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
82243661 ATAATCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
1 ATAATCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CT
* * *
82243701 AT-ATCCGGCTAAATTCCGAAGG
1 ATAATCGGGCTAAGTCCCGAAGG
82243723 TACTTGGTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 19 0.35
40 36 0.65
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAATCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:82251510 original size:30 final size:29
Alignment explanation
Indices: 82251467--82251530 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
82251457 CAAGTAGCCG
*
82251467 AAGCTAGTTAAATCTCACACTTACTGCCA
1 AAGCTAGTTAAATCGCACACTTACTGCCA
*
82251496 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTACTGCCA
82251526 AAGCT
1 AAGCT
82251531 TCCGAATCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTACTGCCA
Found at i:82260602 original size:6 final size:6
Alignment explanation
Indices: 82260585--82260694 Score: 57
Period size: 6 Copynumber: 17.8 Consensus size: 6
82260575 TATCAGAGCT
* * * *
82260585 AGAATC AAAATC AGAATC AGAATT AG-GTGAC AGAATT AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
82260634 A-ATATC AGGTAA-C CGAATC AAAATC AGAATC AGTATC AGGTAA-C AGAATC
1 AGA-ATC A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
*
82260684 AAAATC AGAAT
1 AGAATC AGAAT
82260695 GTGAATGCAA
Statistics
Matches: 77, Mismatches: 16, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
5 6 0.08
6 61 0.79
7 6 0.08
8 3 0.04
9 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:82260628 original size:31 final size:31
Alignment explanation
Indices: 82260585--82260694 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
82260575 TATCAGAGCT
* *
82260585 AGAATCAAAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
82260616 AGAATTAGAATCAGAATCA-ATATCAGGTAAC
1 AGAATCAAAATCAGAATCAGA-ATCAGGTAAC
* *
82260647 CGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
82260678 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
82260695 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.01
31 67 0.99
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:82260876 original size:27 final size:26
Alignment explanation
Indices: 82260831--82260900 Score: 86
Period size: 27 Copynumber: 2.7 Consensus size: 26
82260821 GCTTAGTTAT
** *
82260831 CAGATATTGTCACAGAGTCACCAGATA
1 CAGATATTGTGGCAAAGTCACCAGA-A
*
82260858 TAGATATTGTGGCAAAGTCACCAGAA
1 CAGATATTGTGGCAAAGTCACCAGAA
*
82260884 CAGATAATGTGGCAAAG
1 CAGATATTGTGGCAAAG
82260901 CCACTTAACA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 16 0.43
27 21 0.57
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAAAGTCACCAGAA
Found at i:82260895 original size:26 final size:27
Alignment explanation
Indices: 82260846--82260900 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
82260836 ATTGTCACAG
* *
82260846 AGTCACCAGATATAGATATTGTGGCAA
1 AGTCACCAGATACAGATAATGTGGCAA
82260873 AGTCACCAGA-ACAGATAATGTGGCAA
1 AGTCACCAGATACAGATAATGTGGCAA
82260899 AG
1 AG
82260901 CCACTTAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (27 bp):
AGTCACCAGATACAGATAATGTGGCAA
Found at i:82261091 original size:22 final size:21
Alignment explanation
Indices: 82261063--82261126 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
82261053 GCAAATACGT
82261063 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
82261085 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
82261107 TTGACACAAAGCCATAATCA
1 TTGGCACAAA-CCATAATCA
82261127 AAAGGCTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:82261612 original size:27 final size:27
Alignment explanation
Indices: 82261555--82261882 Score: 358
Period size: 27 Copynumber: 12.2 Consensus size: 27
82261545 GGGCAAAATG
* * * * *
82261555 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
82261581 GTAATTCCACCCTACAGGGATATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82261608 GTAATTCT-CCCTACAGGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82261633 GATAATTCTATCCTACAGGGGTATTTC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
82261660 GATAATTCTACCCTACAGGGGTATTCCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
82261688 GTAATTCTACCCTATAGGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82261715 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82261742 GTAATTCTACCCTACAGGGGTATTGCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
82261769 TTAATTCTACCTTGCAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82261796 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
82261823 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * ** *
82261850 GTATTTCTACCCTATAATGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
82261877 GTAATT
1 GTAATT
82261883 TTGTAAATCG
Statistics
Matches: 260, Mismatches: 38, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
25 1 0.00
26 34 0.13
27 224 0.86
28 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:82261962 original size:27 final size:27
Alignment explanation
Indices: 82261932--82261996 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
82261922 GGTACTTTGG
82261932 TAATTTTACAAGTCGAGAGTATTTCAA
1 TAATTTTACAAGTCGAGAGTATTTCAA
* *
82261959 TAATTTTACAGGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGAGTATTTCAA
*
82261986 TAATTTCACAA
1 TAATTTTACAA
82261997 ATTAGGGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGAGTATTTCAA
Found at i:82262005 original size:27 final size:27
Alignment explanation
Indices: 82261975--82262261 Score: 299
Period size: 27 Copynumber: 10.6 Consensus size: 27
82261965 TACAGGTCGA
** * *
82261975 GGGTATTTCAATAATTTCACAAATTAG
1 GGGTATTTTGATAATTTTACAAACTAG
*
82262002 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTACAAACTAG
*
82262029 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGATAATTTTACAAACTAG
*
82262056 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTACAAACTAG
* * * * *
82262083 AGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGATAATTTTACAAACTAG
*
82262110 GGGTATTTT-AGTAATTTTACAAACCAG
1 GGGTATTTTGA-TAATTTTACAAACTAG
* ** * *
82262137 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGATAATTTTACAAACTAG
*
82262164 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTACAAACTAG
* * * * * *
82262191 TGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGATAATTTTACAAACTAG
*
82262218 GGGTATTTT-AGTAATTTTACAAACCAG
1 GGGTATTTTGA-TAATTTTACAAACTAG
*
82262245 GGGTATTTTGGTAATTT
1 GGGTATTTTGATAATTT
82262262 GGTAAATTAA
Statistics
Matches: 219, Mismatches: 37, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
27 219 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGATAATTTTACAAACTAG
Found at i:82262035 original size:81 final size:81
Alignment explanation
Indices: 82261921--82262261 Score: 371
Period size: 81 Copynumber: 4.2 Consensus size: 81
82261911 TGTAAATCAA
* * * * * *** *
82261921 GGGTACTTTGGTAATTTTAC-AAGTCGAGAGTATTTCAATAATTTTACAGGTC-GAGGGTATTTC
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAATAATTTTACAAACCAG-GGGTATTTT
* * **
82261984 AATAATTTCACAAATTAG
64 AGTAATTTTACAAACCAG
* *
82262002 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTAG
*
82262067 TAATTTTACAAACTAG
66 TAATTTTACAAACCAG
* * * * * *
82262083 AGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTAG
** *
82262148 TAATTTTGTAAACCAA
66 TAATTTTACAAACCAG
* ** * * *
82262164 GGGTATTTTGGTAATTTTACAAACTAGTGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTAG
82262229 TAATTTTACAAACCAG
66 TAATTTTACAAACCAG
82262245 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
82262262 GGTAAATTAA
Statistics
Matches: 221, Mismatches: 37, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
81 216 0.98
82 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTAG
TAATTTTACAAACCAG
Found at i:82262253 original size:54 final size:54
Alignment explanation
Indices: 82262002--82262261 Score: 412
Period size: 54 Copynumber: 4.8 Consensus size: 54
82261992 CACAAATTAG
* * *
82262002 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
82262056 GGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* * *
82262110 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
82262164 GGGTATTTTGGTAATTTTACAAACTAGTGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
82262218 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
82262262 GGTAAATTAA
Statistics
Matches: 187, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 187 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:82265848 original size:28 final size:27
Alignment explanation
Indices: 82265811--82265893 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 27
82265801 AAGTCTACAT
*
82265811 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATCCATATGGCCCA-TAGGCCCAATC
* *
82265839 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATCCATATGGCCCA-TAGGCCC-AATC
*
82265868 ACATCCGTATGGCCCATGAGGCCCAA
1 ACATCCATATGGCCCAT-AGGCCCAA
82265894 ATCAAATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 24 0.51
29 23 0.49
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.20
Consensus pattern (27 bp):
ACATCCATATGGCCCATAGGCCCAATC
Found at i:82265879 original size:29 final size:29
Alignment explanation
Indices: 82265811--82265897 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 29
82265801 AAGTCTACAT
* *
82265811 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATCCATATGGCCCATTAGGCCCAAATC
* *
82265839 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATCCATATGGCCCATTAGGCCCAAATC
* *
82265868 ACATCCGTATGGCCCATGAGGCCCAAATC
1 ACATCCATATGGCCCATTAGGCCCAAATC
82265897 A
1 A
82265898 AATTCATAGT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 21 0.41
29 30 0.59
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (29 bp):
ACATCCATATGGCCCATTAGGCCCAAATC
Found at i:82266150 original size:16 final size:16
Alignment explanation
Indices: 82266116--82266151 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
82266106 TGTAGCCAAA
*
82266116 ATTTTGGCTTTTTGAC
1 ATTTTGGCTTTTCGAC
*
82266132 ATTTTGGCTTTTCGTC
1 ATTTTGGCTTTTCGAC
82266148 ATTT
1 ATTT
82266152 CGGGATTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.14, G:0.17, T:0.58
Consensus pattern (16 bp):
ATTTTGGCTTTTCGAC
Found at i:82270226 original size:26 final size:26
Alignment explanation
Indices: 82270196--82270246 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
82270186 ACCAATGAAC
*
82270196 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
82270222 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
82270247 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:82270286 original size:103 final size:104
Alignment explanation
Indices: 82270102--82270324 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
82270092 AATGGATATC
82270102 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
82270167 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
82270206 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
82270270 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
82270309 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
82270325 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.84
104 18 0.16
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:82270686 original size:29 final size:29
Alignment explanation
Indices: 82270653--82270716 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
82270643 TAATCCACCA
82270653 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
82270682 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
82270712 CCCAA
1 CCCAA
82270717 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:82270690 original size:30 final size:30
Alignment explanation
Indices: 82270660--82270716 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
82270650 CCACCCAACT
82270660 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
82270689 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
82270717 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:82276359 original size:37 final size:37
Alignment explanation
Indices: 82276309--82276387 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
82276299 TTATTACGAA
* *
82276309 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
82276346 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
82276383 GTCTT
1 GTCTT
82276388 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:82276669 original size:47 final size:47
Alignment explanation
Indices: 82276504--82276975 Score: 717
Period size: 47 Copynumber: 10.4 Consensus size: 47
82276494 GCCCTTCGGA
* * * * * * *
82276504 CTTAT-ACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82276550 C-TGTCACATATATA-ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82276595 CTTA-C-CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82276640 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82276687 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82276734 CTTATCACATAT-TACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82276780 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82276827 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82276874 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82276919 CTTATCACATATATACAC--TCACATTCAT---ATC-G--ATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82276958 CTTATCA-ATATATACACT
1 CTTATCACATATATACACT
82276976 GTCTTGGCTG
Statistics
Matches: 402, Mismatches: 15, Indels: 25
0.91 0.03 0.06
Matches are distributed among these distances:
38 10 0.02
39 14 0.03
41 1 0.00
42 3 0.01
44 8 0.02
45 119 0.30
46 54 0.13
47 193 0.48
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82276774 original size:140 final size:140
Alignment explanation
Indices: 82276504--82276975 Score: 731
Period size: 140 Copynumber: 3.5 Consensus size: 140
82276494 GCCCTTCGGA
* * * * * * * *
82276504 CTTAT-ACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCC-TGTCACATATATA-AC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
82276566 TTTCACATTCATCACATCGGCCATTAGGCCTTA-C-CATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAT-TACACTTTCACATTCATCACATC
82276629 GGCCATTAGGC
130 GGCCATTAGGC
* *
82276640 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82276705 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATTACACTTTCACATTCATCACATCG
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATTACACTTTCACATTCATCACATCG
82276770 GCCATTAGGC
131 GCCATTAGGC
82276780 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82276845 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA-TACACTTTCACATTCATCACATCG
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATTACACTTTCACATTCATCACATCG
82276909 GCCATTAGGC
131 GCCATTAGGC
82276919 CTTATCACATATATACAC--TCACATTCAT---ATC-G--ATTAGGCCTTATCA-ATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82276975 T
66 T
82276976 GTCTTGGCTG
Statistics
Matches: 319, Mismatches: 12, Indels: 16
0.92 0.03 0.05
Matches are distributed among these distances:
130 11 0.03
131 14 0.04
133 1 0.00
134 3 0.01
136 5 0.02
137 44 0.14
138 12 0.04
139 86 0.27
140 138 0.43
141 5 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATTACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:82283790 original size:16 final size:16
Alignment explanation
Indices: 82283771--82283801 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82283761 CTTCTTCACT
82283771 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
82283787 TACTTACTTACTTAA
1 TACTCACTTACTTAA
82283802 TCTAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:82284121 original size:53 final size:54
Alignment explanation
Indices: 82283993--82284247 Score: 247
Period size: 55 Copynumber: 4.8 Consensus size: 54
82283983 ACACGGGTAC
* * * * *
82283993 CTTACCATTTCCATGACTTGTCATTGTCTTACATGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
82284042 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
82284095 CTCACCAATGCCATGCCTTGGCATGGTTTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
82284150 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
82284203 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
82284248 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 36 0.21
50 1 0.01
52 2 0.01
53 48 0.28
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:82284193 original size:108 final size:110
Alignment explanation
Indices: 82284040--82284237 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
82284030 ATCCTTTTGA
* *
82284040 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
*
82284103 -TGCCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
82284148 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
82284213 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
82284238 CGGTATCCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.60
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:82289322 original size:27 final size:25
Alignment explanation
Indices: 82289259--82289328 Score: 88
Period size: 25 Copynumber: 2.7 Consensus size: 25
82289249 ATGTACATAT
*
82289259 GTGCTCACACGAGCTGTGAATAAGT
1 GTGCTCACACGAGCTGTGAATAAGC
82289284 GTGCTCACACGAGCTGTGAA-AATGGGC
1 GTGCTCACACGAGCTGTGAATAA---GC
*
82289311 GTGCTCACACGAGTTGTG
1 GTGCTCACACGAGCTGTG
82289329 GGTCGGAACT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 2 0.05
25 20 0.50
27 18 0.45
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.23
Consensus pattern (25 bp):
GTGCTCACACGAGCTGTGAATAAGC
Found at i:82296291 original size:40 final size:41
Alignment explanation
Indices: 82296219--82296295 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 41
82296209 TTAAAAAGGG
* *
82296219 ATGCATGGACATTCATAAAAGAGGGGATTTGACCATTCAAC
1 ATGCATGGACATTCATAAAAGAAGGCATTTGACCATTCAAC
**
82296260 ATGCATGGATGTTCAT-AAAGAAGGCATTTGACCATT
1 ATGCATGGACATTCATAAAAGAAGGCATTTGACCATT
82296296 TAGTTGAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 18 0.56
41 14 0.44
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (41 bp):
ATGCATGGACATTCATAAAAGAAGGCATTTGACCATTCAAC
Found at i:82298090 original size:27 final size:27
Alignment explanation
Indices: 82298072--82298143 Score: 126
Period size: 27 Copynumber: 2.7 Consensus size: 27
82298062 GTTGGCTAGT
82298072 ATTACTGAAATACCCTTGTAGGGTAGA
1 ATTACTGAAATACCCTTGTAGGGTAGA
* *
82298099 ATTACTGAAATGCCCCTGTAGGGTAGA
1 ATTACTGAAATACCCTTGTAGGGTAGA
82298126 ATTACTGAAATACCCTTG
1 ATTACTGAAATACCCTTG
82298144 GTTTACAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (27 bp):
ATTACTGAAATACCCTTGTAGGGTAGA
Found at i:82298155 original size:27 final size:27
Alignment explanation
Indices: 82298133--82298444 Score: 218
Period size: 27 Copynumber: 11.6 Consensus size: 27
82298123 AGAATTACTG
* * *
82298133 AAATACCCTTGGTTTACAAAATTA-CT
1 AAATACCCTTGATTTGCAAAATTACCA
* * * *
82298159 GAATACCCATGGTTTACAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * * *
82298186 AAATACCCTCGATTAGAAAAATTACCG
1 AAATACCCTTGATTTGCAAAATTACCA
* * * *
82298213 AAATACCCCTGGTTTGTAAATTTACCA
1 AAATACCCTTGATTTGCAAAATTACCA
* * *** * *
82298240 AAATACCCCTAATTTTTGAAATTATCG
1 AAATACCCTTGATTTGCAAAATTACCA
*
82298267 AAATACCCTT-ACTTTGTAAAATTACCA
1 AAATACCCTTGA-TTTGCAAAATTACCA
* * * *
82298294 AAATACCCCTAATTTGGAAAATTACTA
1 AAATACCCTTGATTTGCAAAATTACCA
* *
82298321 AAATACCCTTGATTTGGAAAATTACAA
1 AAATACCCTTGATTTGCAAAATTACCA
* *
82298348 AAATACCCCTGATTTACAAAATTA-CA
1 AAATACCCTTGATTTGCAAAATTACCA
* * * *
82298374 GAAATA-CCTTAACTTCCAAAAATTACAA
1 -AAATACCCTTGATTTGC-AAAATTACCA
* * *
82298402 AAATACCATTGATTTGCAAAATTAGCG
1 AAATACCCTTGATTTGCAAAATTACCA
*
82298429 AAATACCCTTGGTTTG
1 AAATACCCTTGATTTG
82298445 TAGATTTATG
Statistics
Matches: 225, Mismatches: 54, Indels: 13
0.77 0.18 0.04
Matches are distributed among these distances:
26 31 0.14
27 185 0.82
28 9 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATACCCTTGATTTGCAAAATTACCA
Found at i:82298752 original size:41 final size:41
Alignment explanation
Indices: 82298707--82298786 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
82298697 GAAGAAATTG
*
82298707 AGGATCGCATGGTTGCTTGACGACCGTCGATCCACCGATTA
1 AGGATCGCATGGTTGCTTAACGACCGTCGATCCACCGATTA
* * *
82298748 AGGATTGCATGGTTGCTTAATGACCGTGGATCCACCGAT
1 AGGATCGCATGGTTGCTTAACGACCGTCGATCCACCGAT
82298787 GGATTTTAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (41 bp):
AGGATCGCATGGTTGCTTAACGACCGTCGATCCACCGATTA
Found at i:82301886 original size:27 final size:27
Alignment explanation
Indices: 82301856--82301928 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
82301846 ATCATATCTG
* *
82301856 TAGGCTAGTATTACTGAAATGCCCCTA
1 TAGGATAGAATTACTGAAATGCCCCTA
82301883 TAGGATAGAATTACTGAAATGCCCCTA
1 TAGGATAGAATTACTGAAATGCCCCTA
* *
82301910 TAGGGTAGAATTATTGAAA
1 TAGGATAGAATTACTGAAA
82301929 CACCCTTGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.29
Consensus pattern (27 bp):
TAGGATAGAATTACTGAAATGCCCCTA
Found at i:82301972 original size:27 final size:26
Alignment explanation
Indices: 82301943--82302111 Score: 169
Period size: 27 Copynumber: 6.3 Consensus size: 26
82301933 CTTGGTTTAC
* *
82301943 AAAATTACCAAAATACCATCGATTAGC
1 AAAATTACCAAAATACC-TCGATTTGT
* *
82301970 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCTCGA-TTTGT
*
82301997 AAAATTACCAAAATATCCTAGATTTGT
1 AAAATTACCAAAATA-CCTCGATTTGT
* *
82302024 GAAATTACCGAAATACCCTCGATTTGT
1 AAAATTACCAAAATA-CCTCGATTTGT
* * *
82302051 AAAATTACCAAAATACCCCTAATTTGG
1 AAAATTACCAAAATACCTC-GATTTGT
*
82302078 AAAATTACCAAAATACCATTGATTT-T
1 AAAATTACCAAAATACC-TCGATTTGT
82302104 GAAAATTA
1 -AAAATTA
82302112 TAGAAATACC
Statistics
Matches: 117, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
26 5 0.04
27 109 0.93
28 3 0.03
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAATTACCAAAATACCTCGATTTGT
Found at i:82302102 original size:81 final size:81
Alignment explanation
Indices: 82301943--82302123 Score: 249
Period size: 81 Copynumber: 2.2 Consensus size: 81
82301933 CTTGGTTTAC
* * * *
82301943 AAAATTACCAAAATACCATCGATTAGCAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCGAAATACCCTCGATTAGCAAAATTACCAAAATACCCCTAATTTGGAAAATTACCAA
82302008 AATATCCTAGATTTGTG
66 AATATCCTAGATTT-TG
* *
82302025 -AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTACCAA
1 AAAATTACCGAAATACCCTCGATTAGCAAAATTACCAAAATACCCCTAATTTGGAAAATTACCAA
*
82302089 AATA-CCATTGATTTTG
66 AATATCC-TAGATTTTG
**
82302105 AAAATTATAGAAATACCCT
1 AAAATTACCGAAATACCCT
82302124 TGATGGACAA
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
80 4 0.05
81 84 0.95
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACCGAAATACCCTCGATTAGCAAAATTACCAAAATACCCCTAATTTGGAAAATTACCAA
AATATCCTAGATTTTG
Found at i:82302211 original size:27 final size:27
Alignment explanation
Indices: 82301970--82302233 Score: 176
Period size: 27 Copynumber: 9.7 Consensus size: 27
82301960 ATCGATTAGC
* *
82301970 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCGAAATACCCTTAGTTTGT
* *
82301997 AAAATTACCAAAATATCC-TAGATTTGT
1 AAAATTACCGAAATACCCTTAG-TTTGT
* *
82302024 GAAATTACCGAAATACCC-TCGATTTGT
1 AAAATTACCGAAATACCCTTAG-TTTGT
* * * *
82302051 AAAATTACCAAAATACCCCTAATTTGG
1 AAAATTACCGAAATACCCTTAGTTTGT
* * *
82302078 AAAATTACCAAAATACCATTGATTTTG-
1 AAAATTACCGAAATACCCTT-AGTTTGT
** * * *
82302105 AAAATTATAGAAATACCCTT-GATGGAC
1 AAAATTACCGAAATACCCTTAGTTTG-T
** * **
82302132 AAAATTATAGAAATACCCTTGACTTTAA
1 AAAATTACCGAAATACCCTT-AGTTTGT
** * *
82302160 AAAATTATAGAAATACCGTTGGTTTGT
1 AAAATTACCGAAATACCCTTAGTTTGT
82302187 AAAATTACCGAAATACCCTTAGTTTGT
1 AAAATTACCGAAATACCCTTAGTTTGT
* * * *
82302214 AGATTTACCCAAACACCCTT
1 AAAATTACCGAAATACCCTT
82302234 GTAGGGTGAA
Statistics
Matches: 192, Mismatches: 38, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
25 2 0.01
26 3 0.02
27 161 0.84
28 25 0.13
29 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTAGTTTGT
Found at i:82302535 original size:41 final size:41
Alignment explanation
Indices: 82302490--82302593 Score: 127
Period size: 41 Copynumber: 2.5 Consensus size: 41
82302480 CGCACGTTTG
* * * * * **
82302490 CTTGAAGACCGTGGATCCATCGATTGAGGATTGTATGGTTA
1 CTTGATGACCGTGGATCCACCGATTAAGGATCGCATCATTA
* *
82302531 CTTGATGATCGTGGATCCACCGATTAAGGATCGCATCATTT
1 CTTGATGACCGTGGATCCACCGATTAAGGATCGCATCATTA
82302572 CTTGATGACCGTGGATCCACCG
1 CTTGATGACCGTGGATCCACCG
82302594 GTGGCTTTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (41 bp):
CTTGATGACCGTGGATCCACCGATTAAGGATCGCATCATTA
Found at i:82305503 original size:42 final size:42
Alignment explanation
Indices: 82305388--82305536 Score: 109
Period size: 42 Copynumber: 3.5 Consensus size: 42
82305378 AGATACCGAT
* * * ** * * *
82305388 GCCATGTCCCAGACGTGGTCTTACATGGGATCTCACATCGAT
1 GCCATATCCCAGACATGGTCTTATATGAAATCTCATATCAAC
* * * * *** * **
82305430 GCCATATTCCATATATGGTCCTATCCAAAATCTCATTTTGAC
1 GCCATATCCCAGACATGGTCTTATATGAAATCTCATATCAAC
* *
82305472 GCCATGTCCCAGACGTGGTCTTATATGAAATCTCATATCAAC
1 GCCATATCCCAGACATGGTCTTATATGAAATCTCATATCAAC
*
82305514 GCCATATCCCAGATATGGTCTTA
1 GCCATATCCCAGACATGGTCTTA
82305537 CACGATAACA
Statistics
Matches: 76, Mismatches: 31, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
42 76 1.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (42 bp):
GCCATATCCCAGACATGGTCTTATATGAAATCTCATATCAAC
Found at i:82316640 original size:42 final size:41
Alignment explanation
Indices: 82316594--82316713 Score: 123
Period size: 42 Copynumber: 2.9 Consensus size: 41
82316584 CTTACATGAG
* **
82316594 ATCTCACATTGATGTCATATTTCAGATATGGTCTTATACAAA
1 ATCTCA-ATTGATGCCATATCCCAGATATGGTCTTATACAAA
* * * * *
82316636 ATCTCATTTCGACGCCATGTCCCAGACATGGTCTTATACGAA
1 ATCTCAATT-GATGCCATATCCCAGATATGGTCTTATACAAA
**
82316678 ATCTCATATCAATGCCATATCCCAGATATGGTCTTA
1 ATCTCA-ATTGATGCCATATCCCAGATATGGTCTTA
82316714 CATGATAACA
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
41 2 0.03
42 59 0.95
43 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.33
Consensus pattern (41 bp):
ATCTCAATTGATGCCATATCCCAGATATGGTCTTATACAAA
Found at i:82328600 original size:27 final size:27
Alignment explanation
Indices: 82328560--82328658 Score: 126
Period size: 27 Copynumber: 3.6 Consensus size: 27
82328550 AGGAAGCATC
*
82328560 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
82328587 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
82328614 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* *
82328642 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
82328659 TTGTAATATC
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 46 0.75
28 15 0.25
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:82337966 original size:45 final size:50
Alignment explanation
Indices: 82337902--82338022 Score: 135
Period size: 50 Copynumber: 2.5 Consensus size: 50
82337892 GATAGGACAG
* * *
82337902 GACAGAAATGAGCCATGTAAGTCCA-A-T-CA-A-GTATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATTACATATATATATGGCATTGGA
* *
82337947 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATTACATATATATATGGCATTGGA
* **
82337997 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATGAGCCATGTAAGTCCAT
82338023 GTCGAAGACA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
45 23 0.37
46 1 0.02
47 1 0.02
48 1 0.02
49 1 0.02
50 35 0.56
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (50 bp):
GACAGGAATGAGCCATGTAAGTCCATATTACATATATATATGGCATTGGA
Found at i:82350647 original size:18 final size:18
Alignment explanation
Indices: 82350622--82350702 Score: 83
Period size: 18 Copynumber: 4.5 Consensus size: 18
82350612 ACCATTTGGA
82350622 AAATTAATACAGTTCACC
1 AAATTAATACAGTTCACC
* *
82350640 ATATTAATACAAATT-ACC
1 AAATTAATAC-AGTTCACC
*
82350658 AAATTAACACAGTTCACC
1 AAATTAATACAGTTCACC
* * *
82350676 AAAATAATATAATTCACC
1 AAATTAATACAGTTCACC
*
82350694 AAGTTAATA
1 AAATTAATA
82350703 TGGTTCACAA
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
17 3 0.06
18 44 0.88
19 3 0.06
ACGTcount: A:0.49, C:0.19, G:0.04, T:0.28
Consensus pattern (18 bp):
AAATTAATACAGTTCACC
Found at i:82350664 original size:36 final size:36
Alignment explanation
Indices: 82350622--82350702 Score: 101
Period size: 36 Copynumber: 2.2 Consensus size: 36
82350612 ACCATTTGGA
* *
82350622 AAATTAATACAGTTCACCATATTAATACAAATT-ACC
1 AAATTAATACAGTTCACCAAAATAATA-AAATTCACC
* *
82350658 AAATTAACACAGTTCACCAAAATAATATAATTCACC
1 AAATTAATACAGTTCACCAAAATAATAAAATTCACC
*
82350694 AAGTTAATA
1 AAATTAATA
82350703 TGGTTCACAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 4 0.11
36 34 0.89
ACGTcount: A:0.49, C:0.19, G:0.04, T:0.28
Consensus pattern (36 bp):
AAATTAATACAGTTCACCAAAATAATAAAATTCACC
Found at i:82350709 original size:18 final size:18
Alignment explanation
Indices: 82350668--82350710 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
82350658 AAATTAACAC
82350668 AGTTCACCAAAATAATAT
1 AGTTCACCAAAATAATAT
* **
82350686 AATTCACCAAGTTAATAT
1 AGTTCACCAAAATAATAT
*
82350704 GGTTCAC
1 AGTTCAC
82350711 AATATAACAC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (18 bp):
AGTTCACCAAAATAATAT
Found at i:82354929 original size:43 final size:43
Alignment explanation
Indices: 82354868--82354956 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
82354858 TTAAAATTTT
82354868 TAATGATTTTCTCAACTCATAATAGGGGATTTCGAAATCATTC
1 TAATGATTTTCTCAACTCATAATAGGGGATTTCGAAATCATTC
82354911 TAATGATTTTCTCAACTCATAATAGGGGATTTCGAAATCATTC
1 TAATGATTTTCTCAACTCATAATAGGGGATTTCGAAATCATTC
82354954 TAA
1 TAA
82354957 CTCTGTCTCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (43 bp):
TAATGATTTTCTCAACTCATAATAGGGGATTTCGAAATCATTC
Found at i:82354943 original size:22 final size:22
Alignment explanation
Indices: 82354875--82354943 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
82354865 TTTTAATGAT
82354875 TTTCTCAACTCATAATAGGGGA
1 TTTCTCAACTCATAATAGGGGA
* * ** **
82354897 TTTC-GAAATCATTCTA-ATGA
1 TTTCTCAACTCATAATAGGGGA
82354917 TTTTCTCAACTCATAATAGGGGA
1 -TTTCTCAACTCATAATAGGGGA
82354940 TTTC
1 TTTC
82354944 GAAATCATTC
Statistics
Matches: 32, Mismatches: 12, Indels: 6
0.64 0.24 0.12
Matches are distributed among these distances:
20 2 0.06
21 12 0.38
22 16 0.50
23 2 0.06
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (22 bp):
TTTCTCAACTCATAATAGGGGA
Found at i:82360205 original size:40 final size:40
Alignment explanation
Indices: 82360161--82360272 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 40
82360151 CTAAAGAGCA
* *
82360161 AGCATTAGCGGTGCTTTTTCAAAAACACCGCTACA-GATC
1 AGCATTAGCGGTGCTTTTTAAAAAACACCGCTACAGGAAC
*
82360200 GAGCATTAGC-GTCGCTTTTTAAAAAAACACCGCTATAGGAAC
1 -AGCATTAGCGGT-GCTTTTT-AAAAAACACCGCTACAGGAAC
* * *
82360242 ACCTTTAGCGGCGCTTTTTAAAAAACACCGC
1 AGCATTAGCGGTGCTTTTTAAAAAACACCGC
82360273 AAAAAATTAT
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
39 2 0.03
40 28 0.45
41 28 0.45
42 4 0.06
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (40 bp):
AGCATTAGCGGTGCTTTTTAAAAAACACCGCTACAGGAAC
Found at i:82360394 original size:40 final size:40
Alignment explanation
Indices: 82360350--82360428 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 40
82360340 GCACCGCTAT
** *
82360350 AGATCGAGTATTAGCAGCGCTTACTGAAAAACGCCACTAA
1 AGATCGAACATTAGCAGCACTTACTGAAAAACGCCACTAA
* * * *
82360390 AGATCGAACATTAGCGGCACTTTCTTAAAAACGCTACTA
1 AGATCGAACATTAGCAGCACTTACTGAAAAACGCCACTA
82360429 TAAGTCCACC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (40 bp):
AGATCGAACATTAGCAGCACTTACTGAAAAACGCCACTAA
Found at i:82360447 original size:40 final size:40
Alignment explanation
Indices: 82360376--82360458 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
82360366 GCGCTTACTG
*
82360376 AAAAACGCCACTAAAGATCGAACATTAGCGGCACTTTCTT
1 AAAAACGCCACTAAAGATCCAACATTAGCGGCACTTTCTT
* * * *
82360416 AAAAACGCTACTATAAG-TCCACCATTCGCGGCACTTTTTT
1 AAAAACGCCACTA-AAGATCCAACATTAGCGGCACTTTCTT
82360456 AAA
1 AAA
82360459 GCACCGCAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 34 0.92
41 3 0.08
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.25
Consensus pattern (40 bp):
AAAAACGCCACTAAAGATCCAACATTAGCGGCACTTTCTT
Found at i:82360811 original size:7 final size:7
Alignment explanation
Indices: 82360790--82360841 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
82360780 TTAATTATCA
*
82360790 TTATAGT
1 TTATGGT
*
82360797 TTAGGGT
1 TTATGGT
82360804 TTATGGT
1 TTATGGT
*
82360811 TTAGGGT
1 TTATGGT
*
82360818 ATATGGT
1 TTATGGT
*
82360825 TTAAGGT
1 TTATGGT
*
82360832 TTAAGGT
1 TTATGGT
82360839 TTA
1 TTA
82360842 GGAGTTACTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:82360812 original size:14 final size:14
Alignment explanation
Indices: 82360790--82360843 Score: 72
Period size: 14 Copynumber: 3.9 Consensus size: 14
82360780 TTAATTATCA
*
82360790 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
82360804 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
82360818 ATATGGTTTAAGGT
1 TTATGGTTTAGGGT
*
82360832 TTAAGGTTTAGG
1 TTATGGTTTAGG
82360844 AGTTACTATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:82360926 original size:14 final size:14
Alignment explanation
Indices: 82360909--82360975 Score: 55
Period size: 14 Copynumber: 4.7 Consensus size: 14
82360899 CAATTGGAGT
82360909 TTAAGGTTTAGGGG
1 TTAAGGTTTAGGGG
* *
82360923 TTAAGGGTTAAGGG
1 TTAAGGTTTAGGGG
*
82360937 TTAAGAG-TTAGAGGT
1 TTAAG-GTTTAG-GGG
* *
82360952 TTATGGTTTAGAGG
1 TTAAGGTTTAGGGG
*
82360966 CTAAGGTTTA
1 TTAAGGTTTA
82360976 TGTTTTGTGA
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
14 30 0.73
15 11 0.27
ACGTcount: A:0.27, C:0.01, G:0.36, T:0.36
Consensus pattern (14 bp):
TTAAGGTTTAGGGG
Found at i:82360933 original size:21 final size:21
Alignment explanation
Indices: 82360909--82360971 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
82360899 CAATTGGAGT
82360909 TTAAGGTTTAGGGGTTAAGGG
1 TTAAGGTTTAGGGGTTAAGGG
* * * *
82360930 TTAAGGGTTAAGAGTTAGAGGT
1 TTAAGGTTTAGGGGTTA-AGGG
* * *
82360952 TTATGGTTTAGAGGCTAAGG
1 TTAAGGTTTAGGGGTTAAGG
82360972 TTTATGTTTT
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
21 17 0.55
22 14 0.45
ACGTcount: A:0.27, C:0.02, G:0.38, T:0.33
Consensus pattern (21 bp):
TTAAGGTTTAGGGGTTAAGGG
Found at i:82361009 original size:7 final size:7
Alignment explanation
Indices: 82360997--82361069 Score: 56
Period size: 7 Copynumber: 10.3 Consensus size: 7
82360987 TTAGGACTTA
82360997 AGGGTTT
1 AGGGTTT
82361004 AGGGTTT
1 AGGGTTT
*
82361011 AGGATTT
1 AGGGTTT
*
82361018 AAGGTTT
1 AGGGTTT
*
82361025 AGAGTTT
1 AGGGTTT
**
82361032 AGTATTT
1 AGGGTTT
**
82361039 AGGGGAT
1 AGGGTTT
*
82361046 AGGGGTT
1 AGGGTTT
*
82361053 AGAAGTTT
1 AG-GGTTT
82361061 AGGGTTT
1 AGGGTTT
82361068 AG
1 AG
82361070 ATTAATTAGT
Statistics
Matches: 50, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
7 45 0.90
8 5 0.10
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.38
Consensus pattern (7 bp):
AGGGTTT
Found at i:82361025 original size:21 final size:22
Alignment explanation
Indices: 82360986--82361039 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
82360976 TGTTTTGTGA
* *
82360986 TTTAGGACTTAAGGGTTTAGGG
1 TTTAGGATTTAAGGGTTTAGAG
82361008 TTTAGGATTTAA-GGTTTAGAG
1 TTTAGGATTTAAGGGTTTAGAG
*
82361029 TTTAGTATTTA
1 TTTAGGATTTA
82361040 GGGGATAGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (22 bp):
TTTAGGATTTAAGGGTTTAGAG
Found at i:82361508 original size:21 final size:21
Alignment explanation
Indices: 82361482--82361523 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
82361472 ATTAACATTT
* * *
82361482 ATCATTAGTATTAATAATTAA
1 ATCATTAATATAAAGAATTAA
82361503 ATCATTAATATAAAGAATTAA
1 ATCATTAATATAAAGAATTAA
82361524 TTCAACAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
ATCATTAATATAAAGAATTAA
Found at i:82361828 original size:72 final size:71
Alignment explanation
Indices: 82361713--82361853 Score: 212
Period size: 72 Copynumber: 2.0 Consensus size: 71
82361703 GCAAAAAACA
** * *
82361713 TAATAGTTTAACGAAAAAGGCATTGTTTTAATTGGAGATTTAGGGGATTAGCGGTGTTCTTTTAG
1 TAATAGTTTAACGAAAAAGGCATCATTTTAATTGGAGACTTAGGGGATTAGCGGCGTT-TTTTA-
82361778 AAAAAATT
64 AAAAAATT
*
82361786 TAATAGTTTAACG-AAAAGGCATCATTTTAATTGGAGACTTAGGGGATTAGTGGCGTTTTTTAAA
1 TAATAGTTTAACGAAAAAGGCATCATTTTAATTGGAGACTTAGGGGATTAGCGGCGTTTTTTAAA
82361850 AAAA
66 AAAA
82361854 CGTTGTAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
70 6 0.10
71 5 0.08
72 39 0.62
73 13 0.21
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (71 bp):
TAATAGTTTAACGAAAAAGGCATCATTTTAATTGGAGACTTAGGGGATTAGCGGCGTTTTTTAAA
AAAATT
Found at i:82365793 original size:26 final size:26
Alignment explanation
Indices: 82365750--82365799 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
82365740 CCCTAATTAT
* *
82365750 GAAAATTACCATTTTACCCCTAGGTG
1 GAAAATGACCATTATACCCCTAGGTG
*
82365776 GAAAATGACCGTTATACCCCTAGG
1 GAAAATGACCATTATACCCCTAGG
82365800 GTTAATTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (26 bp):
GAAAATGACCATTATACCCCTAGGTG
Found at i:82366235 original size:60 final size:60
Alignment explanation
Indices: 82366135--82366271 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
82366125 AACTATGTTA
* *
82366135 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACAGCCCAGATTGATATTG
1 ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACAGCCCAGATTAATATTG
* **
82366195 ATATGGGCTAGGCCCAATATA-CTCTGA-TACTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATATCTC-GACT--TGTAATAGGGCTACAGCCCAGATTAATATTG
82366255 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
82366272 GTTAACACTA
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 4 0.06
60 52 0.76
61 12 0.18
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACAGCCCAGATTAATATTG
Found at i:82369027 original size:25 final size:25
Alignment explanation
Indices: 82368980--82369028 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
82368970 ATTTACATGA
*
82368980 AAATTTTTATTTACTATATTATTTG
1 AAATTTTTATTTACTAGATTATTTG
*
82369005 AAATTTTTA-TTATTAGATATATTT
1 AAATTTTTATTTACTAGAT-TATTT
82369029 ATAAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (25 bp):
AAATTTTTATTTACTAGATTATTTG
Found at i:82371125 original size:60 final size:59
Alignment explanation
Indices: 82371048--82371184 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
82371038 AACTATGTTA
* * *
82371048 ATATGGGCAAGGCCCAATATA-TCTCGACT-TATAATAGGGCTACAGCCCAGATTGATATTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATATAA-AGGGCTACAGCCCAAATTAATATTG
* * **
82371108 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAAATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TATAAAGGGCTACAGCCCAAATTAATATTG
82371168 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
82371185 GTTAACACTA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 1 0.02
60 51 0.77
61 14 0.21
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATATAAAGGGCTACAGCCCAAATTAATATTG
Found at i:82372596 original size:21 final size:23
Alignment explanation
Indices: 82372556--82372602 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
82372546 CCATTTTATA
82372556 TGTTAAATGCTGAAAATTTA-GG
1 TGTTAAATGCTGAAAATTTATGG
*
82372578 TGTTAAATGCTG-CAATTTATGG
1 TGTTAAATGCTGAAAATTTATGG
82372600 TGT
1 TGT
82372603 CTGAAAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.40
Consensus pattern (23 bp):
TGTTAAATGCTGAAAATTTATGG
Found at i:82377261 original size:35 final size:35
Alignment explanation
Indices: 82377221--82377327 Score: 110
Period size: 35 Copynumber: 3.1 Consensus size: 35
82377211 TATAGAGATC
*
82377221 AAGTCCATGGGGACAATAAACACAAAACAAGGATG
1 AAGTCCATAGGGACAATAAACACAAAACAAGGATG
* * * *
82377256 AAGTCCACAGGAACAATAAACACAAAATAGGGATG
1 AAGTCCATAGGGACAATAAACACAAAACAAGGATG
* * *
82377291 AAGTCCGTCA-GGATAGTAAACACAAAAC-AGAGATG
1 AAGTCCAT-AGGGACAATAAACACAAAACAAG-GATG
82377326 AA
1 AA
82377328 ATTCACCAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
34 1 0.02
35 56 0.97
36 1 0.02
ACGTcount: A:0.50, C:0.17, G:0.21, T:0.12
Consensus pattern (35 bp):
AAGTCCATAGGGACAATAAACACAAAACAAGGATG
Found at i:82379094 original size:91 final size:92
Alignment explanation
Indices: 82378939--82379141 Score: 257
Period size: 91 Copynumber: 2.2 Consensus size: 92
82378929 CTCCAATTTT
* * * **
82378939 TGGATAAACCACCAGTGTTT-GCAGGTTAATACGCTGACATTAAGTTGTGAATGCATAATGTGTT
1 TGGATAAACCACCAGTGTTTAGCAAGTTAATACGCTGACAGTAAGTTGTGAATGCACAACCTGTT
* *
82379003 TGTAGATAAAAACTACTAGTAAGTTTA
66 TATAGATAAAAACTACCAGTAAGTTTA
* * **
82379030 TGGATAAACCACTAGTGTTTAG-AAGTTAATACGCTGCCAGTGGGTTGTGAATGCACAACCTGTT
1 TGGATAAACCACCAGTGTTTAGCAAGTTAATACGCTGACAGTAAGTTGTGAATGCACAACCTGTT
** *
82379094 TATAGATAAAAGTTGCCAGTAAGTTTA
66 TATAGATAAAAACTACCAGTAAGTTTA
*
82379121 TGGATAAACAACCAGTGTTTA
1 TGGATAAACCACCAGTGTTTA
82379142 CAGATAATTA
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
91 94 0.99
92 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (92 bp):
TGGATAAACCACCAGTGTTTAGCAAGTTAATACGCTGACAGTAAGTTGTGAATGCACAACCTGTT
TATAGATAAAAACTACCAGTAAGTTTA
Found at i:82392579 original size:18 final size:19
Alignment explanation
Indices: 82392551--82392586 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
82392541 AGTACTAGAA
82392551 CAGTAATCAGTAATAGTAG
1 CAGTAATCAGTAATAGTAG
82392570 CAGTAA-CAGTAATAGTA
1 CAGTAATCAGTAATAGTA
82392587 ATGGTAACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.25
Consensus pattern (19 bp):
CAGTAATCAGTAATAGTAG
Found at i:82392593 original size:18 final size:18
Alignment explanation
Indices: 82392549--82392598 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
82392539 ATAGTACTAG
82392549 AACAGTAATCAGTAATAGT
1 AACAGTAA-CAGTAATAGT
*
82392568 AGCAGTAACAGTAATAGT
1 AACAGTAACAGTAATAGT
**
82392586 AATGGTAACAGTA
1 AACAGTAACAGTA
82392599 TTCAACACAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 20 0.74
19 7 0.26
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (18 bp):
AACAGTAACAGTAATAGT
Found at i:82392748 original size:90 final size:90
Alignment explanation
Indices: 82392590--82392907 Score: 503
Period size: 90 Copynumber: 3.5 Consensus size: 90
82392580 AATAGTAATG
* * *
82392590 GTAACAGTATTCAACACACAAAGTGTTGAATCGGTAACGGTAACGGTAACAGTAACAATATTTGA
1 GTAACAATATTCGACACACAAAGTGTTGAATCGGTAA---T-A--GTAACAGTAACAATATTCGA
*
82392655 CACACAAAGTGCCGAATTGGTAACAGTAGCA
60 CACACAAAGTGCCGAATCGGTAACAGTAGCA
*
82392686 GTAACAATATTC-AGCACACAAAGTGCTGAATCGGTAATAGTAACAGTAACAATATTCGACACAC
1 GTAACAATATTCGA-CACACAAAGTGTTGAATCGGTAATAGTAACAGTAACAATATTCGACACAC
82392750 AAAGTGCCGAATCGGTAACAGTAGCA
65 AAAGTGCCGAATCGGTAACAGTAGCA
* *
82392776 GTAACAATATTCGACACACAAAGTGTCGAATCGGTAACAGTAACAGTAACAATATTCGACACACA
1 GTAACAATATTCGACACACAAAGTGTTGAATCGGTAATAGTAACAGTAACAATATTCGACACACA
82392841 AAGTGCCGAATCGGTAACAGTAGCA
66 AAGTGCCGAATCGGTAACAGTAGCA
82392866 GTAACAATATTCGACACACAAAGTGTTGAATCGGTAATAGTA
1 GTAACAATATTCGACACACAAAGTGTTGAATCGGTAATAGTA
82392908 GCAATAGCGG
Statistics
Matches: 211, Mismatches: 9, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
90 174 0.82
91 1 0.00
92 1 0.00
93 1 0.00
95 1 0.00
96 33 0.16
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (90 bp):
GTAACAATATTCGACACACAAAGTGTTGAATCGGTAATAGTAACAGTAACAATATTCGACACACA
AAGTGCCGAATCGGTAACAGTAGCA
Found at i:82392908 original size:45 final size:45
Alignment explanation
Indices: 82392627--82392910 Score: 444
Period size: 45 Copynumber: 6.3 Consensus size: 45
82392617 GAATCGGTAA
* * *
82392627 CGGTAACGGTAACAGTAACAATATTTGACACACAAAGTGCCGAAT
1 CGGTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAAT
* *
82392672 TGGTAACAGTAGCAGTAACAATATTC-AGCACACAAAGTGCTGAAT
1 CGGTAACAGTAGCAGTAACAATATTCGA-CACACAAAGTGCCGAAT
* *
82392717 CGGTAATAGTAACAGTAACAATATTCGACACACAAAGTGCCGAAT
1 CGGTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAAT
*
82392762 CGGTAACAGTAGCAGTAACAATATTCGACACACAAAGTGTCGAAT
1 CGGTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAAT
*
82392807 CGGTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAAT
1 CGGTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAAT
**
82392852 CGGTAACAGTAGCAGTAACAATATTCGACACACAAAGTGTTGAAT
1 CGGTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAAT
*
82392897 CGGTAATAGTAGCA
1 CGGTAACAGTAGCA
82392911 ATAGCGGTAA
Statistics
Matches: 219, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
44 1 0.00
45 217 0.99
46 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.20
Consensus pattern (45 bp):
CGGTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAAT
Found at i:82393340 original size:5 final size:5
Alignment explanation
Indices: 82393327--82393362 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
82393317 TCATAATCTC
*
82393327 ATTCC ATTCA ATTCA ATTCA ATTCA ATTCAA ATTCA
1 ATTCA ATTCA ATTCA ATTCA ATTCA ATTC-A ATTCA
82393363 CTTTTCCACT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (5 bp):
ATTCA
Found at i:82393486 original size:17 final size:17
Alignment explanation
Indices: 82393464--82393499 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
82393454 TTTCAATCAA
82393464 TACACA-ATTCATATATT
1 TACACATATTCATA-ATT
82393481 TACACATATTCATAATT
1 TACACATATTCATAATT
82393498 TA
1 TA
82393500 ATTTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (17 bp):
TACACATATTCATAATT
Found at i:82394758 original size:29 final size:30
Alignment explanation
Indices: 82394701--82394768 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
82394691 CACCCTTAAA
* * * *
82394701 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTC
*
82394731 ATATTTACACT-TTAATCCCTCAAATTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTC
82394760 AGTATTTAC
1 A-TATTTAC
82394769 TCTTGGGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.46
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTC
Found at i:82399100 original size:18 final size:20
Alignment explanation
Indices: 82399077--82399113 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
82399067 TATATTATAA
82399077 TAATA-TTT-AATAAAATAC
1 TAATATTTTAAATAAAATAC
82399095 TAATATTTTAAATAAAATA
1 TAATATTTTAAATAAAATA
82399114 TTAAATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 3 0.18
20 9 0.53
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
TAATATTTTAAATAAAATAC
Found at i:82402260 original size:17 final size:19
Alignment explanation
Indices: 82402238--82402274 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
82402228 AATGTTAATT
82402238 TATTTT-ATTTTATT-TTA
1 TATTTTAATTTTATTATTA
82402255 TATTTTAATTTTATTATTA
1 TATTTTAATTTTATTATTA
82402274 T
1 T
82402275 CGTTTTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 8 0.44
19 4 0.22
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (19 bp):
TATTTTAATTTTATTATTA
Found at i:82402303 original size:28 final size:27
Alignment explanation
Indices: 82402250--82402303 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 27
82402240 TTTTATTTTA
* * *
82402250 TTTTATATTTTAATTTTATTATTATCG
1 TTTTATATTTTAATTTGATAAATATCG
*
82402277 TTTTATAATTTTTATTTGATAAATATC
1 TTTTAT-ATTTTAATTTGATAAATATC
82402304 AACCTTTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 6 0.27
28 16 0.73
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (27 bp):
TTTTATATTTTAATTTGATAAATATCG
Found at i:82403947 original size:55 final size:53
Alignment explanation
Indices: 82403824--82404078 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 53
82403814 ATTAGGGTTT
* * ** *
82403824 AAGGATACCATGTAAGACCATGCCAAGGCATGAAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATG-GCATTGGTAA-G-TTCATAACGC
*
82403879 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAACGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAACGC
* * * *
82403934 AAAGG-T-CCAATGTAAGACCATGCCAAGGCATGTCATTGGTAAGTTCATAAGGC
1 -AAGGATACC-ATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAACGC
* *
82403987 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AACGC
* * * *
82404036 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
82404079 GTACCCGTGC
Statistics
Matches: 172, Mismatches: 20, Indels: 22
0.80 0.09 0.10
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 8 0.05
53 40 0.23
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAACGC
Found at i:82404030 original size:108 final size:110
Alignment explanation
Indices: 82403833--82404031 Score: 323
Period size: 108 Copynumber: 1.8 Consensus size: 110
82403823 TAAGGATACC
82403833 ATGTAAGACCATGCCAAGGCATGAAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
1 ATGTAAGACCATGCCAAGGCATGAAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
*
82403898 ATGTCAAGACATGGCATTGATAAGTTACTATAACGCAAAGGTCCA
66 ATGTCAAGACATGGCAATGATAAGTTACTATAACGCAAAGGTCCA
**
82403943 ATGTAAGACCATGCCAAGGCATG-TCATTGGTAA-G-TTCATAAGGCAAGGATACCATGTAAGAC
1 ATGTAAGACCATGCCAAGGCATGAAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGAC
* *
82404005 CATGTCGAGACATGGCAATGGTAAGTT
65 CATGTCAAGACATGGCAATGATAAGTT
82404032 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 3 0.04
108 49 0.59
109 8 0.10
110 23 0.28
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGAAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAACGCAAAGGTCCA
Found at i:82404281 original size:16 final size:16
Alignment explanation
Indices: 82404260--82404290 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82404250 ATAAATTTGA
82404260 TTAAGTAAGAAAGTAT
1 TTAAGTAAGAAAGTAT
*
82404276 TTAAGTAAGTAAGTA
1 TTAAGTAAGAAAGTA
82404291 AGTGAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.32
Consensus pattern (16 bp):
TTAAGTAAGAAAGTAT
Found at i:82408779 original size:18 final size:18
Alignment explanation
Indices: 82408756--82408799 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
82408746 AAAAATGAAT
*
82408756 ATTAAAAAATAT-TTTAAA
1 ATTAAAAAATATATAT-AA
*
82408774 ATTAAAAACTATATATAA
1 ATTAAAAAATATATATAA
82408792 ATTAAAAA
1 ATTAAAAA
82408800 TTTTAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
ATTAAAAAATATATATAA
Found at i:82411102 original size:8 final size:8
Alignment explanation
Indices: 82411089--82411113 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
82411079 ACTAAAGTTT
82411089 TATTTTAA
1 TATTTTAA
82411097 TATTTTAA
1 TATTTTAA
82411105 TATTTTAA
1 TATTTTAA
82411113 T
1 T
82411114 TTTATTATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TATTTTAA
Found at i:82411854 original size:9 final size:10
Alignment explanation
Indices: 82411833--82411858 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
82411823 AAATATTTAC
82411833 TTTAAATTTT
1 TTTAAATTTT
82411843 TTTAAATTTT
1 TTTAAATTTT
82411853 TTTAAA
1 TTTAAA
82411859 AAAATGATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTAAATTTT
Found at i:82413343 original size:3 final size:3
Alignment explanation
Indices: 82413335--82413390 Score: 69
Period size: 3 Copynumber: 19.0 Consensus size: 3
82413325 GAGAAGAGAA
* * *
82413335 GAG GAG GAG GAG GAG GAG GAG GAG GAG GGG GAG G-G GAG GGG GAG GGG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
*
82413382 GAG GGG GAG
1 GAG GAG GAG
82413391 AATAAGAGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.25, C:0.00, G:0.75, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:82413352 original size:12 final size:12
Alignment explanation
Indices: 82413335--82413390 Score: 78
Period size: 12 Copynumber: 4.8 Consensus size: 12
82413325 GAGAAGAGAA
*
82413335 GAGGAGGAGGAG
1 GAGGGGGAGGAG
*
82413347 GAGGAGGAGGAG
1 GAGGGGGAGGAG
82413359 GAGGGGGAGG-G
1 GAGGGGGAGGAG
*
82413370 GAGGGGGAGGGG
1 GAGGGGGAGGAG
82413382 GAGGGGGAG
1 GAGGGGGAG
82413391 AATAAGAGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
11 11 0.26
12 31 0.74
ACGTcount: A:0.25, C:0.00, G:0.75, T:0.00
Consensus pattern (12 bp):
GAGGGGGAGGAG
Found at i:82413544 original size:5 final size:5
Alignment explanation
Indices: 82413534--82413560 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
82413524 TCAAATGCAC
82413534 CATCT CATCT CATCT CATCT CATCT CA
1 CATCT CATCT CATCT CATCT CATCT CA
82413561 GGTCATCTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.41, G:0.00, T:0.37
Consensus pattern (5 bp):
CATCT
Found at i:82413566 original size:15 final size:15
Alignment explanation
Indices: 82413534--82413569 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
82413524 TCAAATGCAC
*
82413534 CATCTCATCTCATCT
1 CATCTCATCTCAGCT
*
82413549 CATCTCATCTCAGGT
1 CATCTCATCTCAGCT
82413564 CATCTC
1 CATCTC
82413570 CATTTCTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.19, C:0.39, G:0.06, T:0.36
Consensus pattern (15 bp):
CATCTCATCTCAGCT
Found at i:82417058 original size:49 final size:47
Alignment explanation
Indices: 82416962--82417666 Score: 1104
Period size: 47 Copynumber: 14.7 Consensus size: 47
82416952 TTAGGATTCT
82416962 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
82417009 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATAGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
82417058 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
82417105 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
82417154 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCG
* * *
82417205 ATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
82417252 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * *
82417301 ATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
82417348 ATGTGATGAATGTGAAAGTGTCTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
82417397 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
82417444 ATGTGATGAAAGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
82417491 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
82417538 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
82417585 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
82417632 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
82417667 TCCCGAAGGG
Statistics
Matches: 614, Mismatches: 34, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
47 387 0.63
49 178 0.29
51 49 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:82417070 original size:96 final size:94
Alignment explanation
Indices: 82416962--82417666 Score: 1113
Period size: 96 Copynumber: 7.4 Consensus size: 94
82416952 TTAGGATTCT
82416962 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
82417027 TGTATATATATGTGATAAGGCCGAATAGCCG
66 TG--TATATATGTGATAAGGCCGAATGGCCG
* *
82417058 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
82417123 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCGAATGGCCG
82417154 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 ATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
82417219 AAAGTGTGTATATGTGATAAGGCCGAATGGCCA
62 AAAGTGTATATATGTGATAAGGCCGAATGGCCG
*
82417252 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
82417317 AGTGTATATATGTGATAAGGCCGAATGGCCA
64 AGTGTATATATGTGATAAGGCCGAATGGCCG
82417348 ATGTGATGAATGTGAAAGTGTCTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
82417413 AGTGTATATATGTGATAAGGCCTAATAGTCG
64 AGTGTATATATGTGATAAGGCCGAATGGCCG
* *
82417444 ATGTGATGAAAGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
82417509 TGTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATGTGATAAGGCCGAATGGCCG
82417538 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * *
82417603 TGTATATATGTGACAGGGCCGAGTGGCCA
66 TGTATATATGTGATAAGGCCGAATGGCCG
* * *
82417632 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
82417667 TCCCGAAGGG
Statistics
Matches: 574, Mismatches: 31, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
94 190 0.33
96 295 0.51
98 44 0.08
100 45 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCGAATGGCCG
Done.