Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 259 of 325
Found at i:82417835 original size:37 final size:37
Alignment explanation
Indices: 82417785--82417885 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
82417775 CCGAGCTCTA
82417785 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
82417822 AAGACCCGATGACTACGCGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
82417859 AAGACCCGATGACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
82417886 TCGTCTGAGC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:82420411 original size:9 final size:9
Alignment explanation
Indices: 82420397--82420421 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
82420387 GATTCATTTT
82420397 TTTTAGTTA
1 TTTTAGTTA
82420406 TTTTAGTTA
1 TTTTAGTTA
82420415 TTTTAGT
1 TTTTAGT
82420422 GGCTGTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (9 bp):
TTTTAGTTA
Found at i:82423048 original size:39 final size:38
Alignment explanation
Indices: 82423005--82423110 Score: 106
Period size: 39 Copynumber: 2.7 Consensus size: 38
82422995 AAAGCAAAAG
* ** *
82423005 GAAAAAGAGATCGAAAGAGAATAAAAAGAGATTGAGAGT
1 GAAAAAGAGATCGAAAAAGAA-AAAAAGAGAGAGAGAAT
*
82423044 GAAAAAGAAAGT-GAAAAAGAAAAAAAGAGAGAGAGAAT
1 GAAAAAGAGA-TCGAAAAAGAAAAAAAGAGAGAGAGAAT
*
82423082 GCAAAAAGAGATCGAGAATATGAAAAAAA
1 G-AAAAAGAGATCGA-AA-AAGAAAAAAA
82423111 CGAGTGGAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
38 16 0.29
39 27 0.49
40 3 0.05
41 9 0.16
ACGTcount: A:0.62, C:0.03, G:0.25, T:0.09
Consensus pattern (38 bp):
GAAAAAGAGATCGAAAAAGAAAAAAAGAGAGAGAGAAT
Found at i:82423058 original size:12 final size:12
Alignment explanation
Indices: 82423041--82423065 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82423031 AGAGATTGAG
82423041 AGTGAAAAAGAA
1 AGTGAAAAAGAA
82423053 AGTGAAAAAGAA
1 AGTGAAAAAGAA
82423065 A
1 A
82423066 AAAAGAGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (12 bp):
AGTGAAAAAGAA
Found at i:82430284 original size:40 final size:40
Alignment explanation
Indices: 82430200--82430382 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
82430190 TTGAATGCTG
* * * *
82430200 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
82430239 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
82430280 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATA-CAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
82430319 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
82430359 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
82430383 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:82430351 original size:79 final size:81
Alignment explanation
Indices: 82430200--82430379 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
82430190 TTGAATGCTG
* * * *
82430200 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
* *
82430264 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
82430280 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACAAT-TCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACAATATCCGGACTAAGAT-CCGAAGGCA
82430341 TTCGTGCGAGTTTTAAAA
64 TTCGTGCGAGTTTTAAAA
82430359 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
82430380 ATTGAATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 51 0.58
80 25 0.28
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:82430403 original size:39 final size:39
Alignment explanation
Indices: 82430280--82430429 Score: 117
Period size: 39 Copynumber: 3.8 Consensus size: 39
82430270 AGTTATTAAT
* ** * *
82430280 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAG--ATACAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTCTA-AAA
** *
82430319 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
82430359 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
82430399 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
82430430 GAGCTATATC
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.03
39 52 0.55
40 37 0.39
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:82430403 original size:79 final size:79
Alignment explanation
Indices: 82430253--82430419 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
82430243 GGACTAAGAT
* * * * **
82430253 CCGAAGGTATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACAA
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACAA
* *
82430318 TTCCGGGTTAAGTC
66 TACCGGGCTAAGTC
* * *
82430332 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCGAAGG-CATTGAATGAGTTACT
1 CCGAAGGCATTCGTGCGAGTTATT-AAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACA
*
82430395 ATGACCGGGCTATGTC
65 AT-ACCGGGCTAAGTC
82430411 CCGAAGGCA
1 CCGAAGGCA
82430420 CTTGAACGAG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
78 14 0.19
79 60 0.81
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACAA
TACCGGGCTAAGTC
Found at i:82437500 original size:38 final size:38
Alignment explanation
Indices: 82437457--82437579 Score: 101
Period size: 38 Copynumber: 3.2 Consensus size: 38
82437447 GGACTAAGAT
82437457 CCGAAGAGTATTGTGCGA-TTATTAATTCGGGTTAAGTC
1 CCGAAG-GTATTGTGCGAGTTATTAATTCGGGTTAAGTC
* * **
82437495 CCGAAGCCT-TTGTGCGAGATACCAATTCCGGGTTAA-TC
1 CCGAAG-GTATTGTGCGAGTTATTAATT-CGGGTTAAGTC
* *
82437533 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGTGTTAAGTC
1 CCGAAGGTATT-GTGCGAGTTATT--AATTCGG-GTTAAGTC
82437574 CCGAAG
1 CCGAAG
82437580 CATTGAATGA
Statistics
Matches: 66, Mismatches: 11, Indels: 13
0.73 0.12 0.14
Matches are distributed among these distances:
37 8 0.12
38 23 0.35
39 19 0.29
40 8 0.12
41 8 0.12
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (38 bp):
CCGAAGGTATTGTGCGAGTTATTAATTCGGGTTAAGTC
Found at i:82437583 original size:40 final size:39
Alignment explanation
Indices: 82437484--82437583 Score: 112
Period size: 39 Copynumber: 2.5 Consensus size: 39
82437474 ATTATTAATT
* * * *
82437484 CGGGTTAAGTCCCGAAGCCTTTGTGCGAGATACCAATTC
1 CGGGTTAAGTCCCGAAGCATTCGTGCGAGATACAAAATC
* **
82437523 CGGGTTAA-TCCCGAAGGCATTCGTGCGAGTTTTAAAATC
1 CGGGTTAAGTCCCGAA-GCATTCGTGCGAGATACAAAATC
82437562 CGGTGTTAAGTCCCGAAGCATT
1 CGG-GTTAAGTCCCGAAGCATT
82437584 GAATGAGTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
38 7 0.14
39 27 0.53
40 10 0.20
41 7 0.14
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (39 bp):
CGGGTTAAGTCCCGAAGCATTCGTGCGAGATACAAAATC
Found at i:82450680 original size:7 final size:7
Alignment explanation
Indices: 82450665--82450695 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
82450655 GCACAGTTAG
82450665 CAATTCA
1 CAATTCA
*
82450672 CATTTCA
1 CAATTCA
82450679 CAATTCA
1 CAATTCA
82450686 CAATTCA
1 CAATTCA
82450693 CAA
1 CAA
82450696 ATAATATAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (7 bp):
CAATTCA
Found at i:82457013 original size:28 final size:28
Alignment explanation
Indices: 82456981--82457042 Score: 124
Period size: 28 Copynumber: 2.2 Consensus size: 28
82456971 TATCAATTAT
82456981 GTTATGTTTTGATATGAAAATAAGTTAA
1 GTTATGTTTTGATATGAAAATAAGTTAA
82457009 GTTATGTTTTGATATGAAAATAAGTTAA
1 GTTATGTTTTGATATGAAAATAAGTTAA
82457037 GTTATG
1 GTTATG
82457043 ATTATTTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (28 bp):
GTTATGTTTTGATATGAAAATAAGTTAA
Found at i:82458800 original size:48 final size:48
Alignment explanation
Indices: 82458746--82458912 Score: 205
Period size: 48 Copynumber: 3.5 Consensus size: 48
82458736 AATATTCCTG
* *
82458746 TGTAAGACCATGTCCT-GGACATGGCATCGATGATGATATATGTGCCTA
1 TGTAAGACCATGT-CTGGGACATGGCATCAATGATGATATGTGTGCCTA
* * *
82458794 TGTAAGACCATGTTTGGGACATGACATCAACGATGATATGTGTGCC-A
1 TGTAAGACCATGTCTGGGACATGGCATCAATGATGATATGTGTGCCTA
* **
82458841 GTGTAAGACAATGTCTGGGACATGGCATCAATGATGATATGTG-GATTCA
1 -TGTAAGACCATGTCTGGGACATGGCATCAATGATGATATGTGTGCCT-A
*
82458890 TGTAAGACCATGTCAGGGACATG
1 TGTAAGACCATGTCTGGGACATG
82458913 ACATTTATAC
Statistics
Matches: 102, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
47 3 0.03
48 98 0.96
49 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCAATGATGATATGTGTGCCTA
Found at i:82459109 original size:48 final size:47
Alignment explanation
Indices: 82459008--82459131 Score: 144
Period size: 48 Copynumber: 2.6 Consensus size: 47
82458998 GAAGTGGAGT
* *
82459008 ATGTAAGACCATGTTTGGGACATGACATCAACGATGATATGTGTGCC
1 ATGTAAGACCATGTCTAGGACATGACATCAACGATGATATGTGTGCC
* * * *
82459055 AGTGTAAGACAATGTCTAGGACATGGCATCAATGATGATATGTG-GATTC
1 A-TGTAAGACCATGTCTAGGACATGACATCAACGATGATATGTGTG--CC
82459104 ATGTAAGACCATGTC-AGGGACATGACAT
1 ATGTAAGACCATGTCTA-GGACATGACAT
82459132 TTATACTTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
47 3 0.05
48 60 0.92
49 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (47 bp):
ATGTAAGACCATGTCTAGGACATGACATCAACGATGATATGTGTGCC
Found at i:82467103 original size:30 final size:30
Alignment explanation
Indices: 82467062--82467123 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
82467052 TTTCCGAGTC
* *
82467062 TAGGGGTAAAATTGTAATTTTGCAAAGGTT
1 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
*
82467092 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
82467122 TA
1 TA
82467124 AGTTAGGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (30 bp):
TAGGGGCAAAATTGTAATTTTGCAAAAGTT
Found at i:82467843 original size:47 final size:47
Alignment explanation
Indices: 82467780--82467901 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
82467770 GCATTGGCAC
* *
82467780 TAAGACAAGGAAACCATGTAAGACCATGTTTGGACCATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
82467827 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
82467874 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
82467902 CCAAGGTATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:82468021 original size:55 final size:54
Alignment explanation
Indices: 82467880--82468277 Score: 372
Period size: 54 Copynumber: 7.5 Consensus size: 54
82467870 TTGGTAAGAT
* * *
82467880 AAGGATATCATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * *
82467934 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * * *
82467989 AAAGG-TCCCATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGAC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
*** * **
82468042 AAGGATACCATGTAAGACCATG-TTTGGAACGTGGCATT--TG-G-----TAAGAT
1 AAGGATACCATGTAAGACCATGCCAAGG--CATGGCATTGATGAGTTCTATAAGGC
* *
82468089 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * * *
82468143 AAGGAAATCATCTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * * * *
82468198 AAAGG-TCCCATGTAAGACCATGCTAAGGCATGACATTGGTGAGTTC-ATAAGGG
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* *
82468251 AAGGATACCACGTAAGACCATGTCAAG
1 AAGGATACCATGTAAGACCATGCCAAG
82468278 AGATGACAAT
Statistics
Matches: 280, Mismatches: 47, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
46 8 0.03
47 26 0.09
48 3 0.01
49 1 0.00
51 1 0.00
52 12 0.04
53 45 0.16
54 94 0.34
55 82 0.29
56 8 0.03
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:82468079 original size:109 final size:109
Alignment explanation
Indices: 82467888--82468278 Score: 489
Period size: 109 Copynumber: 3.7 Consensus size: 109
82467878 ATAAGGATAT
* *
82467888 CATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
82467953 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* * * * *
82467997 CATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGACAAGGATACCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
*** * ** *
82468061 ATGTTTGGAACGTGGCATT--TG-G-TAAGATAAGG-ATA--T--
66 ATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* *
82468097 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATCTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
82468162 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* * * * * * *
82468206 CATGTAAGACCATGCTAAGGCATGACATTGGTGAGTTC-ATAAGGGAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
82468270 ATGTCAAGA
66 ATGTCAAGA
82468279 GATGACAATG
Statistics
Matches: 234, Mismatches: 37, Indels: 23
0.80 0.13 0.08
Matches are distributed among these distances:
100 44 0.19
101 27 0.12
102 3 0.01
103 1 0.00
104 10 0.04
105 10 0.04
106 1 0.00
107 3 0.01
108 58 0.25
109 77 0.33
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.24
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:82468177 original size:100 final size:105
Alignment explanation
Indices: 82467827--82468278 Score: 435
Period size: 109 Copynumber: 4.3 Consensus size: 105
82467817 TGGCATTTGG
* * *** *
82467827 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATT-TG-G-TAAGATAAGG-ATA-
1 TAAGGCAAGGATACCATCTAAGACCATGTCAAG-ACATGGCATTATGAGTTAAGATAAGGCAAAG
* * *
82467887 T-CATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTA
65 TCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
* * * **
82467928 TAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAG
1 TAAGGCAAGGATACCATCTAAGACCATGTCAAGACATGGCATT-ATGAGTTAAGATAAGGCAAA-
*
82467993 GTCCCATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTCA
64 GT-CCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
* * *** * *
82468036 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACGTGGCATT-TG-G-TAAGATAAGG-ATA-
1 TAAGGCAAGGATACCATCTAAGACCATGTCAAG-ACATGGCATTATGAGTTAAGATAAGGCAAAG
* *
82468096 T-CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
65 TCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
* * **
82468137 TAAGGCAAGGAAATCATCTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAG
1 TAAGGCAAGGATACCATCTAAGACCATGTCAAGACATGGCATT-ATGAGTTAAGATAAGGCAAA-
* *
82468202 GTCCCATGTAAGACCATGCTAAGGCATGACATTGGTGAGTTCA
64 GT-CCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
*
82468245 TAAGGGAAGGATACCA-CGTAAGACCATGTCAAGA
1 TAAGGCAAGGATACCATC-TAAGACCATGTCAAGA
82468279 GATGACAATG
Statistics
Matches: 286, Mismatches: 44, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
100 54 0.19
101 54 0.19
102 5 0.02
103 2 0.01
104 18 0.06
105 12 0.04
106 1 0.00
107 5 0.02
108 58 0.20
109 77 0.27
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (105 bp):
TAAGGCAAGGATACCATCTAAGACCATGTCAAGACATGGCATTATGAGTTAAGATAAGGCAAAGT
CCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
Found at i:82468187 original size:209 final size:209
Alignment explanation
Indices: 82467827--82468273 Score: 813
Period size: 209 Copynumber: 2.1 Consensus size: 209
82467817 TGGCATTTGG
82467827 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
* *
82467892 TAAGACCATGCCAAGGTATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATCTAAGACCATGT
* *
82467957 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACTATGCCAAGGCATGG
131 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGA
82468022 CATTGGTGAGTTCA
196 CATTGGTGAGTTCA
*
82468036 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACGTGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
82468101 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATCTAAGACCATGT
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATCTAAGACCATGT
*
82468166 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCTAAGGCATGA
131 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGA
82468231 CATTGGTGAGTTCA
196 CATTGGTGAGTTCA
** *
82468245 TAAGGGAAGGATACCACGTAAGACCATGT
1 TAAGACAAGGATACCATGTAAGACCATGT
82468274 CAAGAGATGA
Statistics
Matches: 229, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
209 229 1.00
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (209 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATCTAAGACCATGT
CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGA
CATTGGTGAGTTCA
Found at i:82476647 original size:27 final size:27
Alignment explanation
Indices: 82476593--82476730 Score: 183
Period size: 27 Copynumber: 5.1 Consensus size: 27
82476583 AGCATGGCTG
* *
82476593 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
82476619 CCAGAGCAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
82476646 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
82476673 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
82476700 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
82476727 CCAG
1 CCAG
82476731 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
26 14 0.14
27 87 0.85
28 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:82478238 original size:24 final size:24
Alignment explanation
Indices: 82478162--82478231 Score: 113
Period size: 24 Copynumber: 2.9 Consensus size: 24
82478152 CCAACACTGT
*
82478162 TCTCCCTAATCAGCTCCAAAATCC
1 TCTCCCTTATCAGCTCCAAAATCC
*
82478186 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCAAAATCC
*
82478210 TCTCCCTTATCAGCTCCCAAAT
1 TCTCCCTTATCAGCTCCAAAAT
82478232 ATTCTCCTGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.24, C:0.41, G:0.04, T:0.30
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCAAAATCC
Found at i:82484511 original size:27 final size:27
Alignment explanation
Indices: 82484457--82484567 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
82484447 ACTATAGCTG
* * *
82484457 CCAGAACAGATAA-TGTGACAAAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
82484483 CCTGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
82484510 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * * *
82484537 CCAGATCAGATAAATATGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
82484564 CCAG
1 CCAG
82484568 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 14 0.19
27 58 0.79
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:82484549 original size:54 final size:53
Alignment explanation
Indices: 82484457--82484567 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 53
82484447 ACTATAGCTG
* * * *
82484457 CCAGAACAGATAATGTGACAAAGTCACCTGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAAAGCCACCAGAACAGATAAATATGGCAGAGCCA
* * * *
82484510 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAATATGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAAAGCCACCAGAACAGATAAATATGGCAGAGCCA
82484564 CCAG
1 CCAG
82484568 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 12 0.24
54 37 0.76
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.16
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAAAGCCACCAGAACAGATAAATATGGCAGAGCCA
Found at i:82486031 original size:24 final size:24
Alignment explanation
Indices: 82485999--82486050 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
82485989 CCAACACCGT
*
82485999 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCCAAATCC
* *
82486023 TCTCCCTTATTAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCCAAATCC
82486047 TCTC
1 TCTC
82486051 ATGACAACCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.19, C:0.40, G:0.04, T:0.37
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCCAAATCC
Found at i:82486511 original size:48 final size:47
Alignment explanation
Indices: 82486450--82486556 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
82486440 TGACATTAAT
* * * *
82486450 GATGATATATGTGCCTA-AGTACGACCATGTCTGGGACATGGCATCAGG
1 GATGATATGTGTGCC-AGA-TAAGACCATGTCCGGGACATGGCATCAAG
*
82486498 GATGATATGTGTGCCAGTATAAGACCATGTCCGGGACATGGCATCAAT
1 GATGATATGTGTGCCAG-ATAAGACCATGTCCGGGACATGGCATCAAG
82486546 GATGATATGTG
1 GATGATATGTG
82486557 GATTCATGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
47 1 0.02
48 50 0.96
49 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (47 bp):
GATGATATGTGTGCCAGATAAGACCATGTCCGGGACATGGCATCAAG
Found at i:82486573 original size:48 final size:48
Alignment explanation
Indices: 82486473--82486582 Score: 125
Period size: 48 Copynumber: 2.3 Consensus size: 48
82486463 CCTAAGTACG
* * *
82486473 ACCATGTCTGGGACATGGCATCAGGGATGATATGTGTGCCAGTATAAG
1 ACCATGTCAGGGACATGGCATCAAGGATGATATGTGTGCCAGTATAAC
* * * *
82486521 ACCATGTCCGGGACATGGCATCAATGATGATATGTG-GATTCA-TGTAAC
1 ACCATGTCAGGGACATGGCATCAAGGATGATATGTGTG--CCAGTATAAC
82486569 ACCATGTCAGGGAC
1 ACCATGTCAGGGAC
82486583 TTGGTGTAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 1 0.02
48 50 0.94
49 2 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
ACCATGTCAGGGACATGGCATCAAGGATGATATGTGTGCCAGTATAAC
Found at i:82519269 original size:48 final size:48
Alignment explanation
Indices: 82519194--82519373 Score: 173
Period size: 48 Copynumber: 3.8 Consensus size: 48
82519184 ACCGTGCTAA
* *
82519194 ATGTGCCTGTGTAAGACCATGTTTGGGACCTGGCATCGACGATAATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATAATAT
* * ** * *
82519242 ATGTGCTTGTGTAAGACAATGTCTGGGACATGGCATCGGTGGTGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATAATAT
* * * ** *
82519290 GTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATAATAT
* ** * *
82519338 GTG-GATTCATGTAAGACCATGTCGGGGACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
82519374 TGGTACTTTA
Statistics
Matches: 111, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 1 0.01
48 110 0.99
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.28
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATAATAT
Found at i:82519360 original size:96 final size:96
Alignment explanation
Indices: 82519195--82519373 Score: 234
Period size: 96 Copynumber: 1.9 Consensus size: 96
82519185 CCGTGCTAAA
* * * * * *
82519195 TGTGCCTGTGTAAGACCATGTTTGGGACCTGGCATCGACGATAATATATGTGCTTGTGTAAGACA
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACGATAATATATGTGATTATGTAAGACA
*
82519260 ATGTCTGGGACATGGCATCGGTGGTGATATG
66 ATGTCGGGGACATGGCATCGGTGGTGATATG
** * *
82519291 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATGTG-GATTCATGTAAGAC
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACGATAATATATGTGATT-ATGTAAGAC
*
82519355 CATGTCGGGGACATGGCAT
65 AATGTCGGGGACATGGCAT
82519374 TGGTACTTTA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
95 3 0.04
96 67 0.96
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.28
Consensus pattern (96 bp):
TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACGATAATATATGTGATTATGTAAGACA
ATGTCGGGGACATGGCATCGGTGGTGATATG
Found at i:82521447 original size:27 final size:27
Alignment explanation
Indices: 82521417--82521504 Score: 106
Period size: 27 Copynumber: 3.2 Consensus size: 27
82521407 AGGAAACGTC
* *
82521417 CTGGTGGATATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
82521444 CTGGTGGCTCTGCCA-TATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
82521471 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
82521499 CTGGTG
1 CTGGTG
82521505 ACTGTCACAT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
26 2 0.04
27 41 0.79
28 9 0.17
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:82529282 original size:27 final size:26
Alignment explanation
Indices: 82529242--82529354 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
82529232 GGGAAGCGTC
*
82529242 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
82529269 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
82529296 CTGGTGGCTCTTCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
82529324 CTGGTGACTTTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
82529350 CTGGT
1 CTGGT
82529355 AGGCATGCTG
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 51 0.69
28 15 0.20
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:82529346 original size:54 final size:54
Alignment explanation
Indices: 82529242--82529362 Score: 156
Period size: 54 Copynumber: 2.2 Consensus size: 54
82529232 GGGAAGCGTC
*
82529242 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * * *
82529296 CTGGTGGCTCTTCCACGATTATCTGTATCTGGTGACTTTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
82529350 CTGGTAGGC-ATGC
1 CTGGT-GGCTATGC
82529363 TGCATATTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
54 37 0.65
55 20 0.35
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:82532685 original size:40 final size:40
Alignment explanation
Indices: 82532637--82532802 Score: 246
Period size: 40 Copynumber: 4.2 Consensus size: 40
82532627 GGACTAAGAT
*
82532637 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
82532677 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
82532717 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * * *
82532757 CTGAAGGCATTCGTGGTAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
82532796 CCGAAGG
1 CCGAAGG
82532803 TACTTGGGTT
Statistics
Matches: 116, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.11
40 101 0.87
41 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:82540376 original size:40 final size:40
Alignment explanation
Indices: 82540326--82540531 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
82540316 GGACTAAGAT
* *
82540326 CCGAAAGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
82540366 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
82540406 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
82540446 CTGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
82540486 CCGAAGGCATTCGTGCTAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
82540525 CCGAAGG
1 CCGAAGG
82540532 TACTTGGGTT
Statistics
Matches: 156, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.09
40 140 0.90
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:82544631 original size:46 final size:46
Alignment explanation
Indices: 82544580--82544708 Score: 149
Period size: 46 Copynumber: 2.8 Consensus size: 46
82544570 ATGGTTGAGC
82544580 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATG-GAACTAG
* * * *
82544627 -TCCGAACTCGTTGAGTTGAATCCGAGTTC-GTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGGAACTA-G
82544672 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
82544709 GGGCGGGTTA
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 28 0.41
47 28 0.41
48 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGGAACTAG
Found at i:82550248 original size:17 final size:19
Alignment explanation
Indices: 82550226--82550260 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
82550216 TAAAGTAAAT
82550226 AATATATG-C-TAATATGA
1 AATATATGACTTAATATGA
82550243 AATATATGACTTAATATG
1 AATATATGACTTAATATG
82550261 TGCTAATGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 1 0.06
19 7 0.44
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (19 bp):
AATATATGACTTAATATGA
Found at i:82565342 original size:20 final size:19
Alignment explanation
Indices: 82565296--82565348 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 19
82565286 TTTAATTTAA
*
82565296 TAAATAAAATTATAATAAT
1 TAAATATAATTATAATAAT
82565315 TAACATATAATTAT-ATCAAT
1 TAA-ATATAATTATAAT-AAT
82565335 TATAATATATATTA
1 TA-AATATA-ATTA
82565349 ATTATTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 5 0.17
20 19 0.66
21 5 0.17
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAATATAATTATAATAAT
Found at i:82565351 original size:16 final size:15
Alignment explanation
Indices: 82565320--82565353 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
82565310 ATAATTAACA
82565320 TATAATTATATCAAT
1 TATAATTATATCAAT
*
82565335 TATAATATATATTAAT
1 TATAAT-TATATCAAT
82565351 TAT
1 TAT
82565354 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TATAATTATATCAAT
Found at i:82580044 original size:12 final size:12
Alignment explanation
Indices: 82580027--82580063 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
82580017 GCCGAATCTA
82580027 CCATCTCTTCTT
1 CCATCTCTTCTT
82580039 CCATCTCTTCTT
1 CCATCTCTTCTT
*
82580051 CCTTCTCCTTCTT
1 CCATCT-CTTCTT
82580064 TCAAACCAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 17 0.74
13 6 0.26
ACGTcount: A:0.05, C:0.43, G:0.00, T:0.51
Consensus pattern (12 bp):
CCATCTCTTCTT
Found at i:82581225 original size:20 final size:20
Alignment explanation
Indices: 82581202--82581259 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
82581192 TAAACATGGT
82581202 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
82581222 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
82581242 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
82581260 GTGTATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:82581242 original size:11 final size:11
Alignment explanation
Indices: 82581206--82581259 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
82581196 CATGGTATGT
82581206 ATGATATGCAC
1 ATGATATGCAC
* *
82581217 ATGACATG--T
1 ATGATATGCAC
82581226 ATGATATGCAC
1 ATGATATGCAC
*
82581237 ATGATATG--T
1 ATGATATGCAC
82581246 ATGATATGCAC
1 ATGATATGCAC
82581257 ATG
1 ATG
82581260 GTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:82581340 original size:23 final size:23
Alignment explanation
Indices: 82581310--82581382 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
82581300 AGGAAGTGCA
82581310 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
82581333 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
82581356 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
82581380 AAA
1 AAA
82581383 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:82581399 original size:25 final size:24
Alignment explanation
Indices: 82581309--82581403 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
82581299 GAGGAAGTGC
82581309 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
82581333 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
82581356 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
82581380 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
82581404 ATGATCAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 31 0.48
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:82581632 original size:31 final size:31
Alignment explanation
Indices: 82581597--82581660 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
82581587 CGTTTACAGT
*
82581597 AAAGGCTTCGGCCCAATAATGTGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
* * **
82581628 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
82581659 AA
1 AA
82581661 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:82586487 original size:13 final size:13
Alignment explanation
Indices: 82586469--82586494 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82586459 TCGGTTGAAA
82586469 CTTTTGAAATCAT
1 CTTTTGAAATCAT
82586482 CTTTTGAAATCAT
1 CTTTTGAAATCAT
82586495 GCATTGAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
CTTTTGAAATCAT
Found at i:82592458 original size:16 final size:16
Alignment explanation
Indices: 82592433--82592475 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
82592423 GTAGCCAAAC
*
82592433 TTTTGACTTTTCAGAA
1 TTTTGGCTTTTCAGAA
** *
82592449 TTTTGGCTTTTTGGCA
1 TTTTGGCTTTTCAGAA
82592465 TTTTGGCTTTT
1 TTTTGGCTTTT
82592476 GCCGATACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.58
Consensus pattern (16 bp):
TTTTGGCTTTTCAGAA
Found at i:82595771 original size:25 final size:25
Alignment explanation
Indices: 82595742--82595791 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
82595732 CCTTATAACA
** *
82595742 TGAAAATGACTGTTTTGCCCCTAGG
1 TGAAAATGACCATTTTACCCCTAGG
82595767 TGAAAATGACCATTTTACCCCTAGG
1 TGAAAATGACCATTTTACCCCTAGG
82595792 GTTTAATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (25 bp):
TGAAAATGACCATTTTACCCCTAGG
Found at i:82595879 original size:18 final size:19
Alignment explanation
Indices: 82595842--82595879 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
82595832 GATTTGATAC
82595842 GATATGCACATGTTATGTAT
1 GATATGCACATG-TATGTAT
82595862 GATATGCACATG-ATGTAT
1 GATATGCACATGTATGTAT
82595880 TCATTTATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
20 12 0.67
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (19 bp):
GATATGCACATGTATGTAT
Found at i:82595968 original size:24 final size:25
Alignment explanation
Indices: 82595922--82595973 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
82595912 GAGGAAGTGC
*
82595922 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAAGTTATCA
*
82595947 AAAAGGGCTTTGCCCC-AGTTATTA
1 AAAAGGGCTTTGCCCCAAGTTATCA
82595971 AAA
1 AAA
82595974 GAGGCTAGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAAGTTATCA
Found at i:82595979 original size:24 final size:24
Alignment explanation
Indices: 82595921--82595993 Score: 69
Period size: 24 Copynumber: 3.0 Consensus size: 24
82595911 GGAGGAAGTG
*
82595921 CAAAAG-GGCTTTGCCCCAATTTAT
1 CAAAAGAGGCTTTGCCCC-AGTTAT
82595945 CAAAA-AGGGCTTTGCCCCAGTTAT
1 CAAAAGA-GGCTTTGCCCCAGTTAT
* **
82595969 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCC-CCAGTTAT
82595994 ATGTTAAAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
24 21 0.51
25 20 0.49
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGAGGCTTTGCCCCAGTTAT
Found at i:82596224 original size:31 final size:30
Alignment explanation
Indices: 82596186--82596269 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
82596176 TAGTTACAGT
*
82596186 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTTGGCCCAGT-ATATGAATAATGA
*
82596217 AAAGGCTTTGGCCCAGTAATATGAATAATGT
1 AAAGGCTTTGGCCCAGT-ATATGAATAATGA
82596248 AAAGGCTTTGGCCCAGTATATG
1 AAAGGCTTTGGCCCAGTATATG
82596270 CTGAGATTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (30 bp):
AAAGGCTTTGGCCCAGTATATGAATAATGA
Found at i:82599533 original size:28 final size:28
Alignment explanation
Indices: 82599425--82599539 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
82599415 TACCTGTATC
* * * * *
82599425 TGGCCCACTAAGCCTAATCATATTCATA
1 TGGCCCATTAGGCCAAATCACATTTATA
* *
82599453 TGGCCCATTAGGTCCAAATCACCTGTATA
1 TGGCCCATTAGG-CCAAATCACATTTATA
82599482 TGGCCCATTAGGGCCAAATCACATTTATA
1 TGGCCCATTA-GGCCAAATCACATTTATA
* * * *
82599511 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCAAATCACATTTATA
82599539 T
1 T
82599540 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
28 26 0.36
29 44 0.61
30 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCAAATCACATTTATA
Found at i:82599774 original size:16 final size:16
Alignment explanation
Indices: 82599750--82599792 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
82599740 GTAGCCAAAC
82599750 TTTCGGCTTTTTGACA
1 TTTCGGCTTTTTGACA
* * *
82599766 TTTCAGCTTTTTGGCG
1 TTTCGGCTTTTTGACA
82599782 TTTCGGCTTTT
1 TTTCGGCTTTT
82599793 CAGCATTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.07, C:0.19, G:0.21, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTTGACA
Found at i:82600928 original size:16 final size:16
Alignment explanation
Indices: 82600907--82600940 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
82600897 AGAAAATTTG
*
82600907 GGATTTCGAGATTTTT
1 GGATTTCAAGATTTTT
82600923 GGATTTCAAGATTTTT
1 GGATTTCAAGATTTTT
82600939 GG
1 GG
82600941 GGCGTTACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.26, T:0.47
Consensus pattern (16 bp):
GGATTTCAAGATTTTT
Found at i:82615729 original size:40 final size:40
Alignment explanation
Indices: 82615646--82615908 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
82615636 TTGAATGCTG
* * * * * *
82615646 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
82615686 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
82615726 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
82615766 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
82615806 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
82615846 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
82615885 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
82615909 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:82615928 original size:79 final size:80
Alignment explanation
Indices: 82615685--82615943 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
82615675 AAGTGAATAT
* * * * * * *
82615685 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
82615749 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
82615765 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
82615830 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
82615845 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
82615909 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
82615924 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
82615944 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:82623663 original size:40 final size:40
Alignment explanation
Indices: 82623580--82623842 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
82623570 TTGAATGCTG
* * * * * *
82623580 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
82623620 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
82623660 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
82623700 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
82623740 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
82623780 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
82623819 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
82623843 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:82623862 original size:79 final size:80
Alignment explanation
Indices: 82623619--82623877 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
82623609 AAGTGAATAT
* * * * * * *
82623619 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
82623683 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
82623699 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
82623764 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
82623779 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
82623843 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
82623858 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
82623878 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:82631258 original size:66 final size:66
Alignment explanation
Indices: 82631178--82631323 Score: 240
Period size: 66 Copynumber: 2.2 Consensus size: 66
82631168 CAATCCTGTA
* * *
82631178 GGGTATACTGACTTATGCAACACAGCCAAGTCACATGCCCTTGTGTTAGGCCATGTGCCATTT-A
1 GGGTATACTGACTTATGCAACACAACCAAGTCACATGCCCGTGTGTTAGGCCATATGCCATTTAA
82631242 G
66 G
*
82631243 GAGGTATACTAACTTATGCAACACAACCAAGTCACATGCCCGTGTGTTAGGCCATATGCCATTTA
1 G-GGTATACTGACTTATGCAACACAACCAAGTCACATGCCCGTGTGTTAGGCCATATGCCATTTA
82631308 AG
65 AG
82631310 GGGTATACTGACTT
1 GGGTATACTGACTT
82631324 GTACCACACG
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
65 1 0.01
66 70 0.95
67 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (66 bp):
GGGTATACTGACTTATGCAACACAACCAAGTCACATGCCCGTGTGTTAGGCCATATGCCATTTAA
G
Found at i:82633504 original size:46 final size:46
Alignment explanation
Indices: 82633183--82633504 Score: 430
Period size: 46 Copynumber: 7.0 Consensus size: 46
82633173 TTTCTGTCAT
* * * * *
82633183 GTTGCAATGGTATCTTTTAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
* * *
82633229 GCTGCCATGGTATCTTTCGACCATGTTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
* * *
82633275 GTTGCCATGGTATCTTTCAACCATGATCTTATTCTTTTCATGTC-G
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
* *
82633320 CGTTGCCATGGTATCGTTCAACCATGGTCTTATTCATTTCATATCAC
1 -GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
* * ** *
82633367 GTTGTCATGGTATCTTTCAACCATGATCTTACACATTTCATATTAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
* *
82633413 GTTGCCATGGTATCTTTCAACCATTGTCTTATACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
**
82633459 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
82633505 AGACCACACT
Statistics
Matches: 242, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
45 1 0.00
46 241 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
Found at i:82635596 original size:16 final size:16
Alignment explanation
Indices: 82635571--82635615 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
82635561 AATCCCAATT
*
82635571 TTTCTCTTTTTCCTTC
1 TTTCTTTTTTTCCTTC
82635587 TTTCTTTTTTTCCTTC
1 TTTCTTTTTTTCCTTC
* *
82635603 CTTCTTTCTTTCC
1 TTTCTTTTTTTCC
82635616 CCTAATCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTCTTTTTTTCCTTC
Found at i:82638997 original size:46 final size:46
Alignment explanation
Indices: 82638889--82639350 Score: 604
Period size: 46 Copynumber: 10.0 Consensus size: 46
82638879 TTTGACATGA
* * * *
82638889 TGCCATGGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTCA-TTTCATATCAGGT
* * *
82638939 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
82638985 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
**
82639031 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
* *
82639077 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTC-GCGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG-GT
* * * *
82639123 TGCCATGGTATCGTTCAACCATGATCTTATTCATTGCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
* **
82639169 TGCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
*** *
82639215 TGCCATGGTATCTTTCAACCATGGTCTTGCACAGTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
*** *
82639261 TGCCATGGTATCTTTCAACCATGGTCTTGCACAGTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
**
82639307 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
82639351 AGAGCACACT
Statistics
Matches: 380, Mismatches: 29, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
45 5 0.01
46 349 0.92
47 1 0.00
49 1 0.00
50 24 0.06
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
Found at i:82639141 original size:138 final size:138
Alignment explanation
Indices: 82638889--82639350 Score: 676
Period size: 138 Copynumber: 3.3 Consensus size: 138
82638879 TTTGACATGA
* * * *
82638889 TGCCATGGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGTTGCCATGGTATCTT
1 TGCCATGGTATCTTTCAACCATGGTCTTA--CA--CA-TTTCATATCAGGTTGCCATGGTATCTT
*
82638953 TCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
61 TCAACCATGGTCTTATTCTTTTCATGTCGCGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
82639018 TTTCATATCAGGT
126 TTTCATATCAGGT
82639031 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
* * *
82639096 CATGGTCTTATTCTTTTCATGTCGCGTTGCCATGGTATCGTTCAACCATGATCTTATTCATTGCA
66 CATGGTCTTATTCTTTTCATGTCGCGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
*
82639161 TATCACGT
131 TATCAGGT
*
82639169 TGCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
*** ** * *** *
82639234 CATGGTCTTGCACAGTTCATATCAG-GTTGCCATGGTATCTTTCAACCATGGTCTTGCACAGTTC
66 CATGGTCTTATTCTTTTCATGTC-GCGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC
82639298 ATATCAGGT
130 ATATCAGGT
82639307 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
82639351 AGAGCACACT
Statistics
Matches: 293, Mismatches: 25, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
137 4 0.01
138 259 0.88
139 1 0.00
140 2 0.01
142 27 0.09
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCTTTTCATGTCGCGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
TATCAGGT
Found at i:82641449 original size:16 final size:16
Alignment explanation
Indices: 82641430--82641468 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
82641420 ATTTTTTCCC
*
82641430 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
82641446 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
82641462 TCTTTCC
1 TTTTTCC
82641469 CCTGCTCTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:82641518 original size:16 final size:16
Alignment explanation
Indices: 82641497--82641535 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
82641487 CCATCCTTTC
82641497 TTTCTTTTCTA-TTCTT
1 TTTCTTTT-TATTTCTT
82641513 TTTCTTTTTATTTCTT
1 TTTCTTTTTATTTCTT
*
82641529 TTACTTT
1 TTTCTTT
82641536 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.10
16 19 0.90
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTCTTTTTATTTCTT
Found at i:82648303 original size:17 final size:17
Alignment explanation
Indices: 82648281--82648321 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
82648271 ATACATTTCT
82648281 ACATTCATATTCAAATA
1 ACATTCATATTCAAATA
82648298 ACATTCATATTCAAATA
1 ACATTCATATTCAAATA
*
82648315 CCATTCA
1 ACATTCA
82648322 ACACAATCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (17 bp):
ACATTCATATTCAAATA
Found at i:82648930 original size:23 final size:22
Alignment explanation
Indices: 82648900--82648944 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
82648890 CAATCAAAAT
*
82648900 GGCACC-AATTCATCATACAATA
1 GGCACCAAAATCATCAT-CAATA
82648922 GGCAGCCAAAATCATCATCAATA
1 GGCA-CCAAAATCATCATCAATA
82648945 TACAAAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 7 0.35
24 9 0.45
ACGTcount: A:0.42, C:0.27, G:0.11, T:0.20
Consensus pattern (22 bp):
GGCACCAAAATCATCATCAATA
Found at i:82651360 original size:93 final size:93
Alignment explanation
Indices: 82651231--82651403 Score: 258
Period size: 93 Copynumber: 1.9 Consensus size: 93
82651221 CGCCCATAAG
*
82651231 CGAACTCGGACTCAACTCAACAAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
82651296 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCAGATGCCTAGTTACATCTCT
* ** * *
82651324 CGAACTCGGGCTCAACTCAATGAGTTC-GGACATTCGCATCTATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
82651388 AACGAGTTCAGATGCC
65 AACGAGCTCAGATGCC
82651404 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCT
Found at i:82651396 original size:46 final size:46
Alignment explanation
Indices: 82651226--82651393 Score: 157
Period size: 46 Copynumber: 3.6 Consensus size: 46
82651216 TAACCCGCCC
* * *
82651226 ATAAGCGAACTCGGACTCAACTCAACAAGCTCAGG-CGTTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCT
* *
82651272 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCT
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCT
* * * *
82651322 CT---CGAACTCGGGCTCAACTCAATGAGTTCGGACATTCGCATCT
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCT
*
82651365 ATAAGTGAACTCGGACTCAACTCAACGAG
1 ATAAGCGAACTCGGACTCAACTCAACGAG
82651394 TTCAGATGCC
Statistics
Matches: 97, Mismatches: 15, Indels: 20
0.73 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 7 0.07
44 1 0.01
45 2 0.02
46 51 0.53
47 26 0.27
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCT
Found at i:82655439 original size:40 final size:40
Alignment explanation
Indices: 82655336--82655523 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
82655326 ACTCAAATTT
* **
82655336 TCACACATTAAGTGCCAATACATAGCCGAAGCTAT-TTTAA
1 TCACACACTAAGTGCC-ATACATAGCCGAAGCTATCTCGAA
* *
82655376 TCTCGCATACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
1 --TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* * *
82655418 TCACACACTAAGTGGCATACATAGCCAAAGCTATCTCAAA
1 TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
*
82655458 TCACACACTAAGTGCCATACATAGCCGAAACTATC-CTGAA
1 TCACACACTAAGTGCCATACATAGCCGAAGCTATCTC-GAA
* *
82655498 TCGCACATTAAGTGCCATACATAGCC
1 TCACACACTAAGTGCCATACATAGCC
82655524 AAATTGTCAT
Statistics
Matches: 128, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 93 0.73
41 18 0.14
42 16 0.12
ACGTcount: A:0.36, C:0.28, G:0.14, T:0.23
Consensus pattern (40 bp):
TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
Found at i:82655480 original size:80 final size:81
Alignment explanation
Indices: 82655336--82655526 Score: 260
Period size: 80 Copynumber: 2.4 Consensus size: 81
82655326 ACTCAAATTT
* * * * * *
82655336 TCACACATTAAGTGCCAATACATAGCCGAAGCTATTTTAATCTCGCATACTAAGTGCCATACATA
1 TCACACATTAAGTGCC-ATACATAGCCAAAGCTATCTCAATATCACACACTAAGTGCCATACATA
*
82655401 GCCGAAGCTAT-CTCGAA
65 GCCGAAACTATCCT-GAA
* *
82655418 TCACACACTAAGTGGCATACATAGCCAAAGCTATCTCAA-ATCACACACTAAGTGCCATACATAG
1 TCACACATTAAGTGCCATACATAGCCAAAGCTATCTCAATATCACACACTAAGTGCCATACATAG
82655482 CCGAAACTATCCTGAA
66 CCGAAACTATCCTGAA
*
82655498 TCGCACATTAAGTGCCATACATAGCCAAA
1 TCACACATTAAGTGCCATACATAGCCAAA
82655527 TTGTCATCAA
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
80 60 0.62
81 22 0.23
82 14 0.15
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.23
Consensus pattern (81 bp):
TCACACATTAAGTGCCATACATAGCCAAAGCTATCTCAATATCACACACTAAGTGCCATACATAG
CCGAAACTATCCTGAA
Found at i:82659276 original size:28 final size:28
Alignment explanation
Indices: 82659225--82659286 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
82659215 TTTTCATTTA
*
82659225 TTTCACATTTTAACCACTAACTTTACAAT
1 TTTCACAATTTAACCACTAACTTTAC-AT
*
82659254 TTTCACAATTTAATCC-CT-ACTTTGCAT
1 TTTCACAATTTAA-CCACTAACTTTACAT
82659281 TTTCAC
1 TTTCAC
82659287 TAAAAATCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 8 0.27
28 6 0.20
29 14 0.47
30 2 0.07
ACGTcount: A:0.29, C:0.26, G:0.02, T:0.44
Consensus pattern (28 bp):
TTTCACAATTTAACCACTAACTTTACAT
Found at i:82664560 original size:46 final size:46
Alignment explanation
Indices: 82664510--82664685 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
82664500 TGATTGAGCA
82664510 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82664556 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82664601 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82664649 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82664686 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82664666 original size:93 final size:93
Alignment explanation
Indices: 82664507--82664678 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
82664497 GGATGATTGA
*
82664507 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
82664572 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
82664600 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
82664664 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
82664679 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82672224 original size:45 final size:46
Alignment explanation
Indices: 82672061--82672235 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
82672051 TGGTTGAGCA
*
82672061 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
82672107 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
82672152 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
82672200 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82672236 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:82674618 original size:47 final size:47
Alignment explanation
Indices: 82674564--82674738 Score: 278
Period size: 47 Copynumber: 3.7 Consensus size: 47
82674554 ATGTGAATGA
*
82674564 GCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGCAT
1 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
82674611 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
1 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
* * * *
82674658 GCATATGTGTGATAAGGCCGAATGGCTAATGTGATGAATATGAACAT
1 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
* * *
82674705 GCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 GCATATATGTGATAAGGCCGAATGGCCAATGTGA
82674739 AATATATGTA
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
Found at i:82674692 original size:22 final size:22
Alignment explanation
Indices: 82674617--82674692 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
82674607 GCATGCATAT
*
82674617 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCTA
* *
82674639 ATGTGATGAATGTG-AGCAT-GCATA
1 ATGTGAT-AA-G-GCCGAATGGC-TA
*
82674663 TGTGTGATAAGGCCGAATGGCTA
1 -ATGTGATAAGGCCGAATGGCTA
82674686 ATGTGAT
1 ATGTGAT
82674693 GAATATGAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 14 0.35
23 10 0.25
24 9 0.22
25 7 0.17
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCTA
Found at i:82674995 original size:37 final size:37
Alignment explanation
Indices: 82674942--82675054 Score: 181
Period size: 37 Copynumber: 3.1 Consensus size: 37
82674932 GGAAATATAT
* *
82674942 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
82674979 TCCGGGTAAGAACCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
82675016 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
82675053 TC
1 TC
82675055 TGAGCTAAAG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:82676645 original size:40 final size:40
Alignment explanation
Indices: 82676322--82676633 Score: 480
Period size: 40 Copynumber: 7.8 Consensus size: 40
82676312 GAGAATTGAG
* *
82676322 AGTGATATATCCAGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
82676362 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
82676402 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
82676442 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
82676482 AGTGATGTATCTGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
82676522 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
82676562 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
82676602 GGTGTTATATCCGGGCTGGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
82676634 ATCATGCTGG
Statistics
Matches: 252, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 252 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:82676850 original size:25 final size:25
Alignment explanation
Indices: 82676809--82676858 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
82676799 TGTGCAATAA
82676809 CGAATGAATAAGAGCACTATGTGTG
1 CGAATGAATAAGAGCACTATGTGTG
* *
82676834 CGAATG-ATTAGAGGCACTGTGTGTG
1 CGAATGAATAAGA-GCACTATGTGTG
82676859 TGCGAATTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (25 bp):
CGAATGAATAAGAGCACTATGTGTG
Found at i:82680829 original size:91 final size:94
Alignment explanation
Indices: 82680719--82680944 Score: 350
Period size: 91 Copynumber: 2.4 Consensus size: 94
82680709 AATTGTGATG
*
82680719 TGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTG
1 TGAACGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTG
*
82680784 A-AAGGCCGAATGGCCAATGTGATGAATG
66 ATAAGGCCGAATGGCCAATGTGATGAATA
* *
82680812 TG-A-GTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 TGAACGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTG
82680875 ATAAGGCCGAATGGCCAATGTGATGAATA
66 ATAAGGCCGAATGGCCAATGTGATGAATA
* * * * *
82680904 TGAACATGCATATATGTGGTAAAGTCGAATGGCTAATGTGA
1 TGAACGTGCATATATGTGATAAGGCCGAATGGCCAATGTGA
82680945 AATATATGTA
Statistics
Matches: 122, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
91 59 0.48
92 29 0.24
93 3 0.02
94 31 0.25
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (94 bp):
TGAACGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTG
ATAAGGCCGAATGGCCAATGTGATGAATA
Found at i:82680952 original size:47 final size:47
Alignment explanation
Indices: 82680716--82680944 Score: 347
Period size: 47 Copynumber: 4.9 Consensus size: 47
82680706 GATAATTGTG
**
82680716 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
82680763 ATGTGAACATGCATATATGTGA-AAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
82680809 ATGTG-A-GTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
82680854 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * * *
82680901 ATATGAACATGCATATATGTGGTAAAGTCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
82680945 AATATATGTA
Statistics
Matches: 166, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
44 13 0.08
45 30 0.18
46 29 0.17
47 94 0.57
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:82681198 original size:37 final size:37
Alignment explanation
Indices: 82681148--82681260 Score: 190
Period size: 37 Copynumber: 3.1 Consensus size: 37
82681138 GGAAATATAT
* *
82681148 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
82681185 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
82681222 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
82681259 TC
1 TC
82681261 TGAGCTAAAG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:82683077 original size:28 final size:29
Alignment explanation
Indices: 82683002--82683081 Score: 101
Period size: 29 Copynumber: 2.8 Consensus size: 29
82682992 GCTTGGATTT
* *
82683002 GATTCGGG-CTAGATGGGCCATATGAATGT
1 GATTTGGGCCTAG-TGGGCCATATGAATGA
* *
82683031 GATTTGGGCCGAATGGGCCATATGAATGA
1 GATTTGGGCCTAGTGGGCCATATGAATGA
82683060 GATTT-GGCCTAGTGGGCCATAT
1 GATTTGGGCCTAGTGGGCCATAT
82683082 ACATGTATGT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
28 15 0.34
29 27 0.61
30 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.28
Consensus pattern (29 bp):
GATTTGGGCCTAGTGGGCCATATGAATGA
Found at i:82686178 original size:42 final size:43
Alignment explanation
Indices: 82686128--82686237 Score: 127
Period size: 44 Copynumber: 2.6 Consensus size: 43
82686118 AATGCCACTA
* *
82686128 TCCCAGACAAGGTCTTACACGAAATCA-AA-TACGAT-CCTGATG
1 TCCCAGACAAGGTCTTACACGAAATCATAAGT-CGATGCC-AACG
*
82686170 TCCCAGACATGGTCTTACACGTAAATCATAAGTCGATGCCAACG
1 TCCCAGACAAGGTCTTACACG-AAATCATAAGTCGATGCCAACG
* *
82686214 TCCCAGACGAGGTCTCACACGAAA
1 TCCCAGACAAGGTCTTACACGAAA
82686238 ACACATATCG
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
42 20 0.34
43 9 0.16
44 26 0.45
45 3 0.05
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (43 bp):
TCCCAGACAAGGTCTTACACGAAATCATAAGTCGATGCCAACG
Found at i:82687848 original size:56 final size:56
Alignment explanation
Indices: 82687762--82687951 Score: 254
Period size: 56 Copynumber: 3.4 Consensus size: 56
82687752 TGTGACACTG
* * * *
82687762 ATATAAGTGTACGAGTAAGTCCACGTTTAATATGTTGGCATCGATATTTGACTCCA
1 ATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATATGACTCCA
* * * **
82687818 ATATATGTATGCGAGTAAGACCACATTTAATATGTTGGCATCGATATGTGACTCTG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATATGACTCCA
** *
82687874 ATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATAAATGACTCCA
1 ATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATATGACTCCA
* *
82687930 ATATATGTGTTCAAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
82687952 CTGTCTGGCG
Statistics
Matches: 116, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 116 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATATGACTCCA
Found at i:82687947 original size:112 final size:112
Alignment explanation
Indices: 82687749--82687951 Score: 307
Period size: 112 Copynumber: 1.8 Consensus size: 112
82687739 TGATATATCA
* ** **
82687749 ATATGTGACACTGATATAAGTGTACGAGTAAGTCCACGTTTAATATGTTGGCATCGATATTTGAC
1 ATATGTGACACTGATATAAGTGTACGAGTAAGACCACGTTTAATACATTGGCATCGATAAATGAC
*
82687814 TCCAATATATGTATGCGAGTAAGACCACATTTAATATGTTGGCATCG
66 TCCAATATATGTATGCAAGTAAGACCACATTTAATATGTTGGCATCG
* * *
82687861 ATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATAAATGAC
1 ATATGTGACACTGATATAAGTGTACGAGTAAGACCACGTTTAATACATTGGCATCGATAAATGAC
* *
82687926 TCCAATATATGTGTTCAAGTAAGACC
66 TCCAATATATGTATGCAAGTAAGACC
82687952 CTGTCTGGCG
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
112 80 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (112 bp):
ATATGTGACACTGATATAAGTGTACGAGTAAGACCACGTTTAATACATTGGCATCGATAAATGAC
TCCAATATATGTATGCAAGTAAGACCACATTTAATATGTTGGCATCG
Found at i:82704600 original size:46 final size:44
Alignment explanation
Indices: 82704457--82704600 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 44
82704447 CCCGCCCCTA
*
82704457 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * * *
82704504 CA-CGAACTCGGGCTCAACTCAACGAGTTCAGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGC-CAACCATCT
82704550 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
82704596 AGTGA
1 AGTGA
82704601 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
44 9 0.12
45 2 0.03
46 30 0.40
47 27 0.36
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:82712064 original size:93 final size:93
Alignment explanation
Indices: 82711957--82712127 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82711947 GCCCCTAAGT
* *
82711957 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82712022 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82712050 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82712115 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82712128 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82712124 original size:46 final size:46
Alignment explanation
Indices: 82711952--82712124 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
82711942 AACCCGCCCC
* * *
82711952 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
82711998 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
82712046 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
82712091 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82712125 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:82717407 original size:40 final size:41
Alignment explanation
Indices: 82717297--82717443 Score: 136
Period size: 44 Copynumber: 3.4 Consensus size: 41
82717287 TCTGTTATCA
* * * *
82717297 TGTAAGACCACGTCTAGGAC-GTTGGAATCGATTTGTGATTTACG
1 TGTAAGACCA--TCTGGGACAG-TGGCATCGATATATGATTT-CG
*
82717341 TGTAAGACCATGCCTGGGACATTGGCATCG-TATATGATTTCG
1 TGTAAGACCAT--CTGGGACAGTGGCATCGATATATGATTTCG
* * *
82717383 TGTAAGACCATCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATCTGGGACAGTGGCATCGATATATGATTTCG
82717424 TGTAAGACCACATCTGGGAC
1 TGTAAGA-C-CATCTGGGAC
82717444 GTTGTCATTG
Statistics
Matches: 88, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
40 16 0.18
41 16 0.18
42 15 0.17
43 18 0.20
44 23 0.26
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATCTGGGACAGTGGCATCGATATATGATTTCG
Found at i:82725301 original size:30 final size:30
Alignment explanation
Indices: 82725267--82725327 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
82725257 TCCTTAACTC
82725267 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
82725297 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
82725327 A
1 A
82725328 GGTTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:82730667 original size:13 final size:13
Alignment explanation
Indices: 82730645--82730677 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
82730635 TTACTTTAGT
82730645 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
82730657 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
82730670 TTAGTTTA
1 TTAGTTTA
82730678 ATAAACAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:82730965 original size:5 final size:5
Alignment explanation
Indices: 82730955--82730998 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
82730945 TTTTTCTTGC
*
82730955 AATTT AATTT AATTT AATTT AATTAT TATTT -A-TT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATT-T AATTT AATTT AATTT AATTT
82730999 TTCTTTCTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 27 0.77
6 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
AATTT
Found at i:82739108 original size:13 final size:13
Alignment explanation
Indices: 82739086--82739118 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
82739076 TTGCTTTAGT
82739086 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
82739098 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
82739111 TTAGTTTA
1 TTAGTTTA
82739119 ATAAATAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:82747425 original size:17 final size:19
Alignment explanation
Indices: 82747403--82747437 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
82747393 AATCCATGTG
82747403 TGGCCCA-CGA-GCCCATT
1 TGGCCCATCGAGGCCCATT
82747420 TGGCCCATCGAGGCCCAT
1 TGGCCCATCGAGGCCCAT
82747438 AACGGCCCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.17, C:0.40, G:0.26, T:0.17
Consensus pattern (19 bp):
TGGCCCATCGAGGCCCATT
Found at i:82753728 original size:68 final size:65
Alignment explanation
Indices: 82753656--82753803 Score: 172
Period size: 67 Copynumber: 2.2 Consensus size: 65
82753646 CATCATGTGT
* * * *
82753656 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGT-GTACACCAT
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGGTAGGACACCAT
82753720 GTAG
62 GTAG
* * *
82753724 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTAAAGGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCAGGT--AGGACACCATGT
82753789 AG
64 AG
82753791 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
82753804 GAGATAAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
64 26 0.37
65 3 0.04
66 1 0.01
67 27 0.39
68 13 0.19
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCAGGTAGGACACCATGTAG
Found at i:82755958 original size:29 final size:29
Alignment explanation
Indices: 82755919--82755976 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
82755909 ATGTGTTTAA
82755919 ATTATGGATTGTCTATGTAATTATGTATT
1 ATTATGGATTGTCTATGTAATTATGTATT
82755948 ATTATGGATTGTCTATGTAATTATGTATT
1 ATTATGGATTGTCTATGTAATTATGTATT
82755977 TGGTTAGGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.03, G:0.17, T:0.52
Consensus pattern (29 bp):
ATTATGGATTGTCTATGTAATTATGTATT
Found at i:82756781 original size:18 final size:18
Alignment explanation
Indices: 82756758--82756794 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
82756748 GAATGAAGTA
82756758 TGAATCAAAATGCTTATT
1 TGAATCAAAATGCTTATT
82756776 TGAATCAAAATGCTTATT
1 TGAATCAAAATGCTTATT
82756794 T
1 T
82756795 TTATTAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (18 bp):
TGAATCAAAATGCTTATT
Found at i:82766319 original size:23 final size:23
Alignment explanation
Indices: 82766293--82766356 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 23
82766283 TTCTGACCAT
82766293 TCTCTTCTCTTTTTCTTTTCTCC
1 TCTCTTCTCTTTTTCTTTTCTCC
* * * * *
82766316 TCTCATCTCCTATTCTTTTTTCT
1 TCTCTTCTCTTTTTCTTTTCTCC
82766339 TCTTCTT-TGCTTTTTCTT
1 TC-TCTTCT-CTTTTTCTT
82766357 CTATAGTTGA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
23 21 0.68
24 10 0.32
ACGTcount: A:0.03, C:0.30, G:0.02, T:0.66
Consensus pattern (23 bp):
TCTCTTCTCTTTTTCTTTTCTCC
Found at i:82767575 original size:27 final size:27
Alignment explanation
Indices: 82767536--82767619 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
82767526 GGATGCGTCT
82767536 TGGTGGCTATGCCACAATTATCTGTTC
1 TGGTGGCTATGCCACAATTATCTGTTC
* * *
82767563 TGGTGGCTCTGCCACAAATATCTTTATC
1 TGGTGGCTATGCCACAATTATCTGT-TC
* *
82767591 TGGTGACTATGTCAC-ATTATCTGTTC
1 TGGTGGCTATGCCACAATTATCTGTTC
82767617 TGG
1 TGG
82767620 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.10
27 29 0.60
28 14 0.29
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TGGTGGCTATGCCACAATTATCTGTTC
Found at i:82776077 original size:15 final size:15
Alignment explanation
Indices: 82776021--82776086 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
82776011 GATAACAAGA
82776021 AAAT-CAAAA-AAAG
1 AAATCCAAAATAAAG
*
82776034 AAATCCAAGATAGAA-
1 AAATCCAAAATA-AAG
*
82776049 AAA-CCTAGAATAAAG
1 AAATCC-AAAATAAAG
82776064 AAATCCAAAATAAAG
1 AAATCCAAAATAAAG
*
82776079 AAACCCAA
1 AAATCCAA
82776087 GATACGATAC
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
13 4 0.10
14 8 0.19
15 26 0.62
16 4 0.10
ACGTcount: A:0.65, C:0.15, G:0.09, T:0.11
Consensus pattern (15 bp):
AAATCCAAAATAAAG
Found at i:82779174 original size:49 final size:49
Alignment explanation
Indices: 82779099--82779229 Score: 138
Period size: 51 Copynumber: 2.6 Consensus size: 49
82779089 ATCTGGTATG
* * *
82779099 CATAGTAGCTTGCACTTAGTATTACACATGCGACCAGCAG-TCTAGCACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCA-CAGTTCGAGCACA
* * * * * * *
82779148 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCACAG--TTCGAGCACA
82779199 CATAGTAGCCTGCACTTAGTACTACACATGC
1 CATAGTAGCCTGCACTTAGTACTACACATGC
82779230 AACCTCACAA
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
48 3 0.05
49 30 0.45
51 33 0.50
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGTTCGAGCACA
Found at i:82783224 original size:28 final size:26
Alignment explanation
Indices: 82783205--82783254 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
82783195 CCGCTAAGTA
* *
82783205 TGGAAAATTACCATTATACCCCTACG
1 TGGAAAATAACCATTATACCCCTAAG
*
82783231 TGTAAAATAACCATTATACCCCTA
1 TGGAAAATAACCATTATACCCCTA
82783255 GGGTTAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.26, G:0.08, T:0.28
Consensus pattern (26 bp):
TGGAAAATAACCATTATACCCCTAAG
Found at i:82783428 original size:28 final size:27
Alignment explanation
Indices: 82783362--82783442 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
82783352 AGGAAGTGTC
*
82783362 CTGGTGGCTCTGCCACAAATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
*
82783389 CTGGTGGCTATGCCACAAATATCTTTAT
1 CTGGTGGCTATGCCACAAATATCTGT-T
* * *
82783417 CTGGTGACTATGTCAC-ATTATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
82783443 TTGGCAGCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.02
27 31 0.66
28 15 0.32
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAAATATCTGTT
Found at i:82785545 original size:56 final size:56
Alignment explanation
Indices: 82785475--82785777 Score: 473
Period size: 56 Copynumber: 5.4 Consensus size: 56
82785465 TCCCAGACAA
* *
82785475 GGTCTTACTCGCACACATATATC-AGAGTCATATATCGATGCCAACATATAAAACGT
1 GGTCTTACTCGCACACATATATCGA-AGTCACATATCGATGCCAACGTATAAAACGT
* * * *
82785531 GGTCTTACTTGCACACATATATCGAAGTGACATATCGATGCCAATGGATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
*
82785587 GGTCTTACTCGCACACATATATTGAAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
* *
82785643 GGTCTTACTCGCACACATATATCGAAGTCAGATATCGATGCCAACGTATAAAAGGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
* * *
82785699 GGTCTTACTCACACACATATATCGAAGTCACATATCTATGCCAACGTATAAAACAT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
*
82785755 TGTCTTACTCGCACACATATATC
1 GGTCTTACTCGCACACATATATC
82785778 AAGGCCATGG
Statistics
Matches: 225, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
56 224 1.00
57 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
Found at i:82790368 original size:20 final size:20
Alignment explanation
Indices: 82790343--82790390 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
82790333 AAAAAGCCTT
*
82790343 GTGGCTTGGTGGCGAGTGGC
1 GTGGCTTGGTGGCAAGTGGC
82790363 GTGGCTTGGTGGCAAGTGGC
1 GTGGCTTGGTGGCAAGTGGC
*
82790383 GTGACTTG
1 GTGGCTTG
82790391 CTAACTGGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.08, C:0.15, G:0.50, T:0.27
Consensus pattern (20 bp):
GTGGCTTGGTGGCAAGTGGC
Found at i:82791965 original size:27 final size:27
Alignment explanation
Indices: 82791935--82792025 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
82791925 CCTAAAGTAA
82791935 GTAAAATGACTGTAATACCCCTGTAGG
1 GTAAAATGACTGTAATACCCCTGTAGG
** *
82791962 GTAAAATGACCATAATACCCATGTAGG
1 GTAAAATGACTGTAATACCCCTGTAGG
* * *
82791989 GTAAAATGA-TCGTAACACCCCTATATG
1 GTAAAATGACT-GTAATACCCCTGTAGG
82792016 GTAAAATGAC
1 GTAAAATGAC
82792026 GATTATGCCC
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
GTAAAATGACTGTAATACCCCTGTAGG
Found at i:82792413 original size:33 final size:33
Alignment explanation
Indices: 82792369--82792435 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
82792359 GCTTGGGCCC
* *
82792369 ACTCTACTACTGTATAGGGCTAAAGCCCAGACT
1 ACTCTACTACTGAATAAGGCTAAAGCCCAGACT
* **
82792402 ACTCTAGTACTGAATAAGGCTACGGCCCAGACT
1 ACTCTACTACTGAATAAGGCTAAAGCCCAGACT
82792435 A
1 A
82792436 TTTTGCATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (33 bp):
ACTCTACTACTGAATAAGGCTAAAGCCCAGACT
Found at i:82798753 original size:46 final size:46
Alignment explanation
Indices: 82798700--82798871 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
82798690 TGGGCATCCA
*
82798700 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCAG
* * * *
82798746 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCAG
* * *
82798793 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CAAG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC-AG
* *
82798839 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82798872 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 59 0.56
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCAG
Found at i:82798851 original size:93 final size:93
Alignment explanation
Indices: 82798692--82798863 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
82798682 AGGATATTTG
* *
82798692 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCAGAACTCGTTGAG
82798757 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
82798785 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CAAGAGCTCGTTGA
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-AGAACTCGTTGA
*
82798849 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
82798864 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCAGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:82804273 original size:20 final size:20
Alignment explanation
Indices: 82804245--82804288 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
82804235 GCACATGTAC
*
82804245 TCATAAAATTTCT-CAATTTT
1 TCATAAAATTT-TACAACTTT
*
82804265 TCATCAAATTTTACAACTTT
1 TCATAAAATTTTACAACTTT
82804285 TCAT
1 TCAT
82804289 TTTAGTCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.34, C:0.18, G:0.00, T:0.48
Consensus pattern (20 bp):
TCATAAAATTTTACAACTTT
Found at i:82809490 original size:49 final size:50
Alignment explanation
Indices: 82809419--82809643 Score: 237
Period size: 49 Copynumber: 4.5 Consensus size: 50
82809409 TGAGGTCATG
82809419 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGT-CGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTACGTA
* * * * *
82809468 TGTGTAGTAGTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATAACG--
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TTGGT-ACGTA
* * * **
82809519 TGTGTAGTACTAAGTGCATGCTACTACGTGTATCAGATGGTTAGGTCACGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGT-ACGTA
** * *
82809571 --TGTAGTACTAAAAGTAGGCTACTACGTGTACCGGATAATTGGT-CGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTACGTA
82809618 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
82809644 TGCATACCAG
Statistics
Matches: 140, Mismatches: 27, Indels: 18
0.76 0.15 0.10
Matches are distributed among these distances:
47 3 0.02
49 62 0.44
50 37 0.26
51 36 0.26
53 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTACGTA
Found at i:82811940 original size:125 final size:126
Alignment explanation
Indices: 82811696--82811948 Score: 463
Period size: 125 Copynumber: 2.0 Consensus size: 126
82811686 TCCGTGGAAG
82811696 AAAATTCTTCGTTTTGGTCGCAAAGGCAAATTGAGTCCGCGTTTCATCGGGCCATATAAAATCAT
1 AAAATTCTTCGTTTTGGTCGCAAAGGCAAATTGAGTCCGCGTTTCATCGGGCCATATAAAATCAT
82811761 CGAAAGAATAGGGCCAGTGGCATATCGGCTAGCTTTACCATCAGAATTAGAAAATATCCAT
66 CGAAAGAATAGGGCCAGTGGCATATCGGCTAGCTTTACCATCAGAATTAGAAAATATCCAT
* * * *
82811822 AAAATTTTTCGTTTTGGTCGCAAAGGCAAATTGAGTCTGCGTTTCATCGGGCCGTATAAGATC-T
1 AAAATTCTTCGTTTTGGTCGCAAAGGCAAATTGAGTCCGCGTTTCATCGGGCCATATAAAATCAT
82811886 CGAAAGAATAGGGCCAGTGGCATATCGGCTAGCTTTACCATCAGAATTAGAAAATATCCAT
66 CGAAAGAATAGGGCCAGTGGCATATCGGCTAGCTTTACCATCAGAATTAGAAAATATCCAT
82811947 AA
1 AA
82811949 TGTATTTCAT
Statistics
Matches: 123, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
125 64 0.52
126 59 0.48
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (126 bp):
AAAATTCTTCGTTTTGGTCGCAAAGGCAAATTGAGTCCGCGTTTCATCGGGCCATATAAAATCAT
CGAAAGAATAGGGCCAGTGGCATATCGGCTAGCTTTACCATCAGAATTAGAAAATATCCAT
Found at i:82812877 original size:21 final size:20
Alignment explanation
Indices: 82812853--82812891 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
82812843 GAGTATTTTG
82812853 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
82812874 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
82812892 ACAAGTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:82814524 original size:43 final size:43
Alignment explanation
Indices: 82814474--82814572 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
82814464 GGTGTGATTT
** *
82814474 CATGTAAGACCATCTCTGGGACATTGGCATCGATATGAGATTA
1 CATGTAAGACCATCTCTGGGACAGAGGCATCGATATGAGATAA
* * * * *
82814517 CGTGTAAGGCCCTGTCTGGGACAGAGGCATCGATATGTGATAA
1 CATGTAAGACCATCTCTGGGACAGAGGCATCGATATGAGATAA
82814560 CATGTAAGACCAT
1 CATGTAAGACCAT
82814573 ATCTTGGATA
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (43 bp):
CATGTAAGACCATCTCTGGGACAGAGGCATCGATATGAGATAA
Found at i:82826898 original size:23 final size:22
Alignment explanation
Indices: 82826848--82826910 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
82826838 GGACTGAAAC
82826848 GGTAAGCTC-TGAAGAGCTAAAT
1 GGTAAGCTCAT-AAGAGCTAAAT
*
82826870 GATAAGCTCATAAGAGCTAAAAT
1 GGTAAGCTCATAAGAGCT-AAAT
*
82826893 GGTAAGCTCATACGAGCT
1 GGTAAGCTCATAAGAGCT
82826911 GTGGTGAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 15 0.42
23 21 0.58
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (22 bp):
GGTAAGCTCATAAGAGCTAAAT
Found at i:82852998 original size:16 final size:16
Alignment explanation
Indices: 82852977--82853007 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82852967 ACATTTTAGC
*
82852977 TTTTCACCTTTTCAGT
1 TTTTCAACTTTTCAGT
82852993 TTTTCAACTTTTCAG
1 TTTTCAACTTTTCAG
82853008 CCTTTGTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.23, G:0.06, T:0.55
Consensus pattern (16 bp):
TTTTCAACTTTTCAGT
Found at i:82855255 original size:27 final size:27
Alignment explanation
Indices: 82855203--82855256 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
82855193 GGGCAAAACC
* *
82855203 CTACAAGGGTATGTCAGTCATTTTACA
1 CTACAAGGGTATGTCAGTAATATTACA
*
82855230 CTACAAGGGTATTTC-GATAATATTACA
1 CTACAAGGGTATGTCAG-TAATATTACA
82855257 AATTGGGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (27 bp):
CTACAAGGGTATGTCAGTAATATTACA
Found at i:82855266 original size:27 final size:27
Alignment explanation
Indices: 82855235--82855710 Score: 523
Period size: 27 Copynumber: 17.7 Consensus size: 27
82855225 TTACACTACA
* *
82855235 AGGGTATTTCGATAATATTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
82855262 GGGGTGTTTCAATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
82855289 ATGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
82855316 GGGGTGTTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * **
82855343 ATGGTATTTCGGTAATTTTACAAATAA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
82855370 AGTGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
82855397 ACGGTAGTTT-GATAATTTTACAAATCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
* * *
82855424 AGCGTGTTTC-AGTAATTTTACAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
82855451 AGGGTGTTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
** *
82855478 AGGGTATTTTAATAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
82855505 AGGGTGTTTC-AGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
82855532 AGAGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
82855559 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
82855586 GGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
** *
82855613 AGGGTATTTTAATAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
82855639 AGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
82855666 AGGGTATTTTCG-TAATTTTACAAATCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
82855693 AGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
82855711 CTCTTTATTA
Statistics
Matches: 385, Mismatches: 54, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
26 32 0.08
27 343 0.89
28 10 0.03
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Done.