Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 260 of 325
Found at i:82856078 original size:28 final size:28
Alignment explanation
Indices: 82856046--82856146 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
82856036 CTCGTTCACT
*
82856046 TGGCCCATCAAGCCCAATTACATTCATA
1 TGGCCCATCAAGCCCAATCACATTCATA
82856074 TGGCCCATCAAGCCCAATCACATTCATA
1 TGGCCCATCAAGCCCAATCACATTCATA
*
82856102 TGGCCCATC-AGACCCAGTCACATTCATA
1 TGGCCCATCAAG-CCCAATCACATTCATA
*
82856130 TGGCCCATCAGGCCCAA
1 TGGCCCATCAAGCCCAA
82856147 CTCTTTCCCA
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
27 2 0.03
28 64 0.96
29 1 0.01
ACGTcount: A:0.30, C:0.36, G:0.14, T:0.21
Consensus pattern (28 bp):
TGGCCCATCAAGCCCAATCACATTCATA
Found at i:82858062 original size:15 final size:16
Alignment explanation
Indices: 82858044--82858082 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
82858034 AAAAAGCCTT
* *
82858044 GTGGCTTGG-TGGCGA
1 GTGGCGTGGCTGGCAA
82858059 GTGGCGTGGCTGGCAA
1 GTGGCGTGGCTGGCAA
82858075 GTGGCGTG
1 GTGGCGTG
82858083 ACTTGGTAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.08, C:0.15, G:0.54, T:0.23
Consensus pattern (16 bp):
GTGGCGTGGCTGGCAA
Found at i:82858165 original size:33 final size:33
Alignment explanation
Indices: 82858128--82858196 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
82858118 TGGCATACAG
82858128 GGTGTATTTATTTTATTGCCATGAGGTGAGAGA
1 GGTGTATTTATTTTATTGCCATGAGGTGAGAGA
82858161 GGTGTATTTATTTTATTGCCATGAGGTGAGAGA
1 GGTGTATTTATTTTATTGCCATGAGGTGAGAGA
82858194 GGT
1 GGT
82858197 AGAGTTGGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.23, C:0.06, G:0.32, T:0.39
Consensus pattern (33 bp):
GGTGTATTTATTTTATTGCCATGAGGTGAGAGA
Found at i:82859683 original size:27 final size:27
Alignment explanation
Indices: 82859653--82859743 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
82859643 CCTAAAGTAA
82859653 GTAAAATGACTGTAATACCCCTGTAGG
1 GTAAAATGACTGTAATACCCCTGTAGG
** *
82859680 GTAAAATGACCATAATACCCATGTAGG
1 GTAAAATGACTGTAATACCCCTGTAGG
* * *
82859707 GTAAAATGA-TCGTAACACCCCTATATG
1 GTAAAATGACT-GTAATACCCCTGTAGG
82859734 GTAAAATGAC
1 GTAAAATGAC
82859744 GATTATGCCC
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
GTAAAATGACTGTAATACCCCTGTAGG
Found at i:82860131 original size:33 final size:33
Alignment explanation
Indices: 82860087--82860153 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
82860077 GCTTGGGCCC
* *
82860087 ACTCTACTACTGTATAGGGCTAAAGCCCAGACT
1 ACTCTACTACTGAATAAGGCTAAAGCCCAGACT
* **
82860120 ACTCTAGTACTGAATAAGGCTACGGCCCAGACT
1 ACTCTACTACTGAATAAGGCTAAAGCCCAGACT
82860153 A
1 A
82860154 TTTTGCATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (33 bp):
ACTCTACTACTGAATAAGGCTAAAGCCCAGACT
Found at i:82876520 original size:23 final size:22
Alignment explanation
Indices: 82876470--82876532 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
82876460 GGACTGAAAC
82876470 GGTAAGCTC-TGAAGAGCTAAAT
1 GGTAAGCTCAT-AAGAGCTAAAT
*
82876492 GATAAGCTCATAAGAGCTAAAAT
1 GGTAAGCTCATAAGAGCT-AAAT
*
82876515 GGTAAGCTCATACGAGCT
1 GGTAAGCTCATAAGAGCT
82876533 GTGGTGAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 15 0.42
23 21 0.58
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (22 bp):
GGTAAGCTCATAAGAGCTAAAT
Found at i:82882589 original size:28 final size:28
Alignment explanation
Indices: 82882557--82882684 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
82882547 ATAGTAAGTC
*
82882557 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
82882585 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
82882614 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
82882642 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
82882671 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82882685 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:82882647 original size:57 final size:57
Alignment explanation
Indices: 82882556--82882684 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
82882546 TATAGTAAGT
*
82882556 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
82882613 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
82882670 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
82882685 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:82886466 original size:33 final size:33
Alignment explanation
Indices: 82886425--82886493 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
82886415 TCCTATAAAG
*
82886425 CTTACTTTGTTTGTTTTTCCATGATTTTAGTGA
1 CTTACTTTGTTTATTTTTCCATGATTTTAGTGA
82886458 CTTACTTTGTTTATTTTTCCATGATTTTAGTGA
1 CTTACTTTGTTTATTTTTCCATGATTTTAGTGA
82886491 CTT
1 CTT
82886494 CAAAGCTAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.16, C:0.13, G:0.13, T:0.58
Consensus pattern (33 bp):
CTTACTTTGTTTATTTTTCCATGATTTTAGTGA
Found at i:82891533 original size:54 final size:55
Alignment explanation
Indices: 82891337--82891533 Score: 150
Period size: 55 Copynumber: 3.6 Consensus size: 55
82891327 ACCTTACCAT
* * * ** * * * * *
82891337 TGCCATGTCTTGACTTGGTCTTATGTGGTATCCTTGCTTTAT--GAACTCACCAT
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATCAAAACTTATCAA
* * ** **
82891390 TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATCAAAACTTATCAA
* * * * *
82891445 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGT-AAAACTTA-CTAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATCAAAACTTATC-AA
* *
82891499 TTCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
82891534 AACCCCTAAT
Statistics
Matches: 110, Mismatches: 31, Indels: 5
0.75 0.21 0.03
Matches are distributed among these distances:
53 35 0.32
54 35 0.32
55 40 0.36
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (55 bp):
TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATCAAAACTTATCAA
Found at i:82904742 original size:27 final size:27
Alignment explanation
Indices: 82904711--82905186 Score: 516
Period size: 27 Copynumber: 17.7 Consensus size: 27
82904701 TTACACTACA
* *
82904711 AGGGTATTTCGATAATATTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
82904738 GGGGTGTTTCAATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
82904765 ATGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
82904792 GGGGTGTTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* **
82904819 ATGGTATTTCGGA-AATTTTACAAATAA
1 AGGGTATTTC-GATAATTTTACAAATCG
* *
82904846 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
82904873 ACGGTAGTTT-GATAATTTTACAAATCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
* * *
82904900 AGCGTGTTTC-AGTAATTTTACAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
82904927 AGGGTGTTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
** *
82904954 AGGGTATTTTAATAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
82904981 AGGGTGTTTC-AGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
82905008 AGAGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
82905035 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
82905062 GGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
82905089 AGGGTATTTCAATAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
82905115 AGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
*
82905142 AGGGTATTTTTG-TAATTTTACAAATCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
82905169 AGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
82905187 CTCTTTATTA
Statistics
Matches: 381, Mismatches: 56, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
26 33 0.09
27 337 0.88
28 11 0.03
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:82905535 original size:29 final size:28
Alignment explanation
Indices: 82905486--82905619 Score: 123
Period size: 28 Copynumber: 4.8 Consensus size: 28
82905476 ATACACAGTT
* **
82905486 ATTCATTTGGCCCATTTAGGCCTAATCTC
1 ATTCATATGGCCCATCAAGGCC-AATCTC
*
82905515 GTTCACT-TGGCCCATCAAGGCCAAT-TAC
1 ATTCA-TATGGCCCATCAAGGCCAATCT-C
* *
82905543 ATTCATATGGCCCATCAAGCCCAATCAC
1 ATTCATATGGCCCATCAAGGCCAATCTC
* * *
82905571 ATTCATATGGCCCATC-AGACCCAGTCAC
1 ATTCATATGGCCCATCAAG-GCCAATCTC
82905599 ATTCATATGGCCCATC-AGGCC
1 ATTCATATGGCCCATCAAGGCC
82905620 CAACTATTTC
Statistics
Matches: 92, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
27 6 0.07
28 68 0.74
29 17 0.18
30 1 0.01
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (28 bp):
ATTCATATGGCCCATCAAGGCCAATCTC
Found at i:82905556 original size:28 final size:27
Alignment explanation
Indices: 82905522--82905622 Score: 139
Period size: 28 Copynumber: 3.6 Consensus size: 27
82905512 CTCGTTCACT
* *
82905522 TGGCCCATCAAGGCCAATTACATTCATA
1 TGGCCCATC-AGCCCAATCACATTCATA
82905550 TGGCCCATCAAGCCCAATCACATTCATA
1 TGGCCCATC-AGCCCAATCACATTCATA
*
82905578 TGGCCCATCAGACCCAGTCACATTCATA
1 TGGCCCATCAG-CCCAATCACATTCATA
82905606 TGGCCCATCAGGCCCAA
1 TGGCCCATCA-GCCCAA
82905623 CTATTTCCCA
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
27 2 0.03
28 64 0.96
29 1 0.01
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.21
Consensus pattern (27 bp):
TGGCCCATCAGCCCAATCACATTCATA
Found at i:82915218 original size:48 final size:48
Alignment explanation
Indices: 82915123--82915489 Score: 310
Period size: 48 Copynumber: 7.7 Consensus size: 48
82915113 TGATATGTGT
* * * * * *
82915123 GCCAGTGTAAGACCATTTCTGAGACATAG-AGTTGGCCACGATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCA-TCGACCACGTTATGAGA
* * * * * *
82915171 GCCAATGTAAGACCATGTTTGGAACATGGCATCGACGATGTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGA
* *** * * *
82915219 GCCAGTGTAAGACCGTGTCTGGGACATGGCATCGACTTTGATATGTGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGA
* *
82915267 GCTAATGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGA
* * * *
82915315 GCCAGTGTAAGACCATGTTTGGGACGTGGCATCGGCCACCTTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGA
* * * * * * *
82915363 GCCAGTGTAAGACCATGTCTGGGAAATAGCATCG-GCATTGATATGTGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CGTTATGAGA
** * * * * * *
82915411 GTTAGTGTAAGACCATG-CTAGGACATGGCATAG-GCACCTTTTGAAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGA
* *
82915457 GCTAGTGTAAGACCATGTCTAGGACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
82915490 AACAAAGAGA
Statistics
Matches: 254, Mismatches: 62, Indels: 7
0.79 0.19 0.02
Matches are distributed among these distances:
46 19 0.07
47 31 0.12
48 203 0.80
49 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGA
Found at i:82915373 original size:144 final size:143
Alignment explanation
Indices: 82915113--82915489 Score: 434
Period size: 144 Copynumber: 2.6 Consensus size: 143
82915103 GACATTTGGG
* * * * * * * *
82915113 TGATATGTGTGCCAGTGTAAGACCATTTCTGAGACATAGAG-TTGGCCACGATATGAGAGCCAAT
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACAT-G-GCATAGCCACGTTATGAGAGCCAGT
* * ** * *
82915177 GTAAGACCATGTTTGGAACATGGCATCGACGATGTTGTGAGAGCCAGTGTAAGACCGTGTCTGGG
64 GTAAGACCATGTTTGGGACATGGCATCGACCACCTTATGAGAGCCAGTGTAAGACCATGTCTGGG
* * *
82915242 ACATGGCATCGACTT
129 AAATAGCATCGACAT
* *
82915257 TGATATGTGCGCTAATGTAAGACCATGTCTGGGACATGGCATCGACCACGTTATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATAG-CCACGTTATGAGAGCCAGTG
* *
82915322 TAAGACCATGTTTGGGACGTGGCATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTCTGGGA
65 TAAGACCATGTTTGGGACATGGCATCGACCACCTTATGAGAGCCAGTGTAAGACCATGTCTGGGA
*
82915387 AATAGCATCGGCAT
130 AATAGCATCGACAT
* * * * * * *
82915401 TGATATGTGCGTTAGTGTAAGACCATG-CTAGGACATGGCATAGGCACCTTTTGAAAGCTAGTGT
1 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATAGCCACGTTATGAGAGCCAGTGT
* *
82915465 AAGACCATGTCTAGGACATGGCATC
66 AAGACCATGTTTGGGACATGGCATC
82915490 AACAAAGAGA
Statistics
Matches: 198, Mismatches: 33, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
142 39 0.20
143 17 0.09
144 142 0.72
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (143 bp):
TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATAGCCACGTTATGAGAGCCAGTGT
AAGACCATGTTTGGGACATGGCATCGACCACCTTATGAGAGCCAGTGTAAGACCATGTCTGGGAA
ATAGCATCGACAT
Found at i:82915522 original size:142 final size:144
Alignment explanation
Indices: 82915214--82915528 Score: 339
Period size: 142 Copynumber: 2.2 Consensus size: 144
82915204 GACGATGTTG
* * * * *
82915214 TGAGAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGACTTTGATATGTGCGCTAATGTAAGA
1 TGAGAGCCAATGTAAGACCATGTCTGGGAAATAGCATCGACATTGATATGTGCGCTAATGTAAGA
* * * * * * *
82915279 CCATGTCTGGGACATGGCATCGACCACGTTATGAGAGCCAGTGTAAGACCATGTTTGGGACGTGG
66 CCATGTCTAGGACATGGCATAGACCACCTTATGAAAGCCAGTGTAAGACCATGTCTAGGACATGG
** * * **
82915344 CATCGGCCACCTTA
131 CATCAACAAACAGA
* * * *
82915358 TGAGAGCCAGTGTAAGACCATGTCTGGGAAATAGCATCGGCATTGATATGTGCGTTAGTGTAAGA
1 TGAGAGCCAATGTAAGACCATGTCTGGGAAATAGCATCGACATTGATATGTGCGCTAATGTAAGA
* * *
82915423 CCATG-CTAGGACATGGCATAG-GCACCTTTTGAAAGCTAGTGTAAGACCATGTCTAGGACATGG
66 CCATGTCTAGGACATGGCATAGACCACCTTATGAAAGCCAGTGTAAGACCATGTCTAGGACATGG
*
82915486 CATCAACAAAGAGA
131 CATCAACAAACAGA
* * *
82915500 CT-AGAGCTAATGTAAGGCCATGTATGGGA
1 -TGAGAGCCAATGTAAGACCATGTCTGGGA
82915529 CATGGAATCG
Statistics
Matches: 142, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
142 64 0.45
143 15 0.11
144 63 0.44
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (144 bp):
TGAGAGCCAATGTAAGACCATGTCTGGGAAATAGCATCGACATTGATATGTGCGCTAATGTAAGA
CCATGTCTAGGACATGGCATAGACCACCTTATGAAAGCCAGTGTAAGACCATGTCTAGGACATGG
CATCAACAAACAGA
Found at i:82921438 original size:39 final size:39
Alignment explanation
Indices: 82921234--82921456 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
82921224 TTGAATGCTG
* * * * * *
82921234 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
82921274 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
82921314 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
82921354 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
82921394 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
82921433 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
82921457 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 109 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:82921476 original size:79 final size:80
Alignment explanation
Indices: 82921309--82921491 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
82921299 GTGCGAGATA
* * *
82921309 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
82921374 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * *
82921389 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
82921453 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
82921468 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
82921492 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:82928803 original size:40 final size:40
Alignment explanation
Indices: 82928720--82928982 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
82928710 TTGAATGCTG
* * * * * *
82928720 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
82928760 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
82928800 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
82928840 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
82928880 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
82928920 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
82928959 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
82928983 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:82929002 original size:79 final size:80
Alignment explanation
Indices: 82928759--82929017 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
82928749 AAGTGAATAT
* * * * * * *
82928759 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
82928823 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
82928839 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
82928904 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
82928919 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
82928983 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
82928998 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
82929018 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:82933807 original size:144 final size:143
Alignment explanation
Indices: 82933547--82933881 Score: 357
Period size: 144 Copynumber: 2.3 Consensus size: 143
82933537 GACATTTGAG
* * * * * *
82933547 TGATATGTGTGCCAATGTAAGACCATGTCTGGGACATGGCTTCAGCCACGATATGAGAGCCAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC-GGCACGATATGAGAGCCAGTG
** * ** * * *
82933612 TAAGACCATGTTTAGAACATGGCATCAGCGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
65 TAAGACCATGTCCAGAACATGGCATCAGCCACCTTCTAAGAGCCAGTGTAAGACCATATCTGGGA
*
82933677 CATGGCAT-TGCCAT
130 CATGGCATCGGCC-T
* * * * * *
82933691 TGATATGTGCGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTGATATGTGCGCTAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA-CGATATGAGAGCCAGTG
* * * * * *
82933756 TAAGACCATGTCCGGGACATGGCATCGGCCACCTTCTAAGAGGCAGTGTAAGATCATATTTGGGA
65 TAAGACCATGTCCAGAACATGGCATCAGCCACCTTCTAAGAGCCAGTGTAAGACCATATCTGGGA
82933821 CATGGCATCGGCCT
130 CATGGCATCGGCCT
* * * *
82933835 CGACATGTGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCA
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
82933882 ATCCACCCTC
Statistics
Matches: 157, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
143 2 0.01
144 152 0.97
145 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (143 bp):
TGATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGATATGAGAGCCAGTGT
AAGACCATGTCCAGAACATGGCATCAGCCACCTTCTAAGAGCCAGTGTAAGACCATATCTGGGAC
ATGGCATCGGCCT
Found at i:82933879 original size:48 final size:48
Alignment explanation
Indices: 82933548--82933880 Score: 276
Period size: 48 Copynumber: 6.9 Consensus size: 48
82933538 ACATTTGAGT
* * * * * * *
82933548 GATATGTGTGCCAATGTAAGACCATGTCTGGGACATGGCTTCAGCCAC
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
* * * * * *
82933596 GATATGAGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCAGCGAT-
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC-CTC
* * * * * * *
82933644 GTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-TGCCATT
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCC-TC
* ** *
82933692 GATATGTGCGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGTATT
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
* ** *
82933740 GATATGTGCGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCCAC
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
** * ** * *
82933788 CTTCTAAGAGGC-AGTGTAAGATCATATTTGGGACATGGCATCGGCCTC
1 GATATGTGA-GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
* * *
82933836 GACATGTGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGC
1 GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC
82933881 AATCCACCCT
Statistics
Matches: 227, Mismatches: 52, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
47 5 0.02
48 219 0.96
49 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (48 bp):
GATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
Found at i:82942226 original size:27 final size:26
Alignment explanation
Indices: 82942186--82942301 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 26
82942176 ATCATGGCTG
* ** *
82942186 CCAGAACAAATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
82942212 CCAGATACAGATATTGTGGCGGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
82942239 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
82942266 CCAGAAACAGATATTTGTGGCATAACCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
82942294 CCAGAACA
1 CCAGAACA
82942302 CTTCCTCCAT
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 12 0.15
27 41 0.52
28 26 0.33
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:82942283 original size:28 final size:28
Alignment explanation
Indices: 82942210--82942299 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
82942200 GTGATAGAGT
* **
82942210 CACCAGATACAGATA-TTGTGGCGGAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
82942237 CACCAG-AACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
*
82942264 CACCAGAAACAGATATTTGTGGCATAAC
1 CACCAGAAACAGATATTTGTGGCATAGC
82942292 CACCAGAA
1 CACCAGAA
82942300 CACTTCCTCC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 7 0.12
27 22 0.39
28 28 0.49
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCATAGC
Found at i:82942580 original size:27 final size:27
Alignment explanation
Indices: 82942506--82942582 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
82942496 CAAAATGGTA
* * *
82942506 ATTT-TACCCCACAAGGGTATCTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* *
82942532 AATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
82942559 ATTTCTACCCTACAAGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
82942583 GAAGGGGTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCAGT
Found at i:82942605 original size:40 final size:39
Alignment explanation
Indices: 82942545--82942620 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 39
82942535 TCTACCCTAC
*
82942545 AGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGA
1 AGGGGTATTTCAGTAATTCTACCCTAC-AGGGTATTTCGA
*
82942585 AGGGGTATTTCAGTAATTCTACCTTACAGGGTATTT
1 AGGGGTATTTCAGTAATTCTACCCTACAGGGTATTT
82942621 TAATAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 9 0.26
40 25 0.74
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (39 bp):
AGGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCGA
Found at i:82942654 original size:27 final size:27
Alignment explanation
Indices: 82942624--82942698 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 27
82942614 GGTATTTTAA
*
82942624 TAATTTTTTAAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGG
* * * * *
82942651 TAATTCTGTAAATCGGGGGTACATTGG
1 TAATTTTATAAATCGAGGGTAAAATGG
* *
82942678 TAATTTTACAAGTCGAGGGTA
1 TAATTTTATAAATCGAGGGTA
82942699 TTTCAGTAAT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.35
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTAAAATGG
Found at i:82944904 original size:27 final size:26
Alignment explanation
Indices: 82944867--82944927 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
82944857 AGCATGGCTG
** *
82944867 CCAGAACAGATAGTGTGACAGAGTCA
1 CCAGAACAGATACAGTGACAGAGCCA
*
82944893 CCAGATACAGATACAGTGGCAGAGCCA
1 CCAGA-ACAGATACAGTGACAGAGCCA
82944920 CCAGAACA
1 CCAGAACA
82944928 AATATTTGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.39, C:0.25, G:0.25, T:0.11
Consensus pattern (26 bp):
CCAGAACAGATACAGTGACAGAGCCA
Found at i:82944964 original size:28 final size:27
Alignment explanation
Indices: 82944908--82944982 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 27
82944898 TACAGATACA
*
82944908 GTGGCAGAGCCACCAGAACAAATATTT
1 GTGGCATAGCCACCAGAACAAATATTT
82944935 GTGGCATAGCCACCAGTAACAGAA-ATTT
1 GTGGCATAGCCACCAG-AACA-AATATTT
82944963 GTGGCATAGCCACCAGAACA
1 GTGGCATAGCCACCAGAACA
82944983 CATCCTCCAT
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
27 19 0.42
28 24 0.53
29 2 0.04
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (27 bp):
GTGGCATAGCCACCAGAACAAATATTT
Found at i:82945230 original size:54 final size:54
Alignment explanation
Indices: 82945172--82945283 Score: 118
Period size: 54 Copynumber: 2.1 Consensus size: 54
82945162 TTAACACCCT
* *
82945172 AGGGGCAAAATGGTAATTT-TACCCCATAAGGGTATCTCAGTAATTCTACCCTAC
1 AGGGGCAAAATGAT-ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
* *** * * **
82945226 AGGGGTATTTTGATATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTAC
1 AGGGGCAAAATGATATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
82945280 AGGG
1 AGGG
82945284 TATTTCAATA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 4 0.09
54 43 0.91
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (54 bp):
AGGGGCAAAATGATATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
Found at i:82945295 original size:26 final size:26
Alignment explanation
Indices: 82945200--82945320 Score: 152
Period size: 27 Copynumber: 4.6 Consensus size: 26
82945190 TTACCCCATA
* *
82945200 AGGGTATCTCAGTAATTCTACCCTAC
1 AGGGTATTTCAATAATTCTACCCTAC
** *
82945226 AGGGGTATTTTGATATTTCTACCCTAC
1 A-GGGTATTTCAATAATTCTACCCTAC
***
82945253 AAGGGTATTTTGGTAATTCTACCCTAC
1 -AGGGTATTTCAATAATTCTACCCTAC
82945280 AGGGTATTTCAATAATTCTACCCTAC
1 AGGGTATTTCAATAATTCTACCCTAC
82945306 AGGGTATTTCAATAA
1 AGGGTATTTCAATAA
82945321 CTTTGTAAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 39 0.47
27 43 0.52
28 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (26 bp):
AGGGTATTTCAATAATTCTACCCTAC
Found at i:82949072 original size:27 final size:27
Alignment explanation
Indices: 82949042--82949095 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
82949032 TGTCATGTGA
* *
82949042 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
82949069 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
82949096 GGTTGTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:82949451 original size:51 final size:49
Alignment explanation
Indices: 82949327--82949548 Score: 282
Period size: 49 Copynumber: 4.5 Consensus size: 49
82949317 GTGAGGTGAT
* *
82949327 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCAC
* * * * *
82949376 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTTGATCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TTGGTCAC
* * ** *
82949427 GTGTGTAGTACTAAGTGCGGGCTACTACGTGTATCAGATGGTTAGGTCAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCAC
* *
82949477 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCAC
*
82949526 ATGTGTAGTACTAAGTGCAGGCT
1 GTGTGTAGTACTAAGTGCAGGCT
82949549 GTAACAGCCC
Statistics
Matches: 145, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
49 64 0.44
50 42 0.29
51 39 0.27
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (49 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCAC
Found at i:82950502 original size:27 final size:26
Alignment explanation
Indices: 82950462--82950573 Score: 86
Period size: 27 Copynumber: 4.2 Consensus size: 26
82950452 AGCATGGCTG
* *
82950462 CCAGA-ACATATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTG-CAGAGCCA
82950488 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GT-GCAGAGCCA
* * *
82950516 TCAGAATAGAAATATATG-GCAGAGCCA
1 CCAG-ATACAGATA-ATGTGCAGAGCCA
*
82950543 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGT-GCAGAGCCA
82950570 CCAG
1 CCAG
82950574 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
24 1 0.01
25 6 0.09
26 7 0.10
27 32 0.46
28 12 0.17
29 9 0.13
30 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGATACAGATAATGTGCAGAGCCA
Found at i:82951009 original size:16 final size:15
Alignment explanation
Indices: 82950988--82951017 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
82950978 AAAATACCGA
82950988 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
82951004 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
82951018 CCAATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:82960022 original size:43 final size:44
Alignment explanation
Indices: 82959975--82960057 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
82959965 CAAATGTGAT
*
82959975 CTTACATGT-AAT-TCAATATCGATGCCTCTGTCCCAGACAGGGG
1 CTTACATGTAAATCTCAA-ATCGAAGCCTCTGTCCCAGACAGGGG
* *
82960018 CTTACATGTAAATCTGAAATCGAAGCCTGTGTCCCAGACA
1 CTTACATGTAAATCTCAAATCGAAGCCTCTGTCCCAGACA
82960058 CAGTCTTACA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
43 9 0.26
44 23 0.66
45 3 0.09
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (44 bp):
CTTACATGTAAATCTCAAATCGAAGCCTCTGTCCCAGACAGGGG
Found at i:82960066 original size:44 final size:43
Alignment explanation
Indices: 82959974--82960067 Score: 109
Period size: 44 Copynumber: 2.2 Consensus size: 43
82959964 CCAAATGTGA
* **
82959974 TCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAGGG
1 TCTTACATGTAATTCAATATCGAAGCCTCTGTCCCAGACACAG
* * *
82960017 GCTTACATGTAAATCTGAA-ATCGAAGCCTGTGTCCCAGACACAG
1 TCTTACATGT-AAT-TCAATATCGAAGCCTCTGTCCCAGACACAG
82960061 TCTTACA
1 TCTTACA
82960068 CGATATTTCA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
43 9 0.21
44 30 0.71
45 3 0.07
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
TCTTACATGTAATTCAATATCGAAGCCTCTGTCCCAGACACAG
Found at i:82963397 original size:40 final size:40
Alignment explanation
Indices: 82963349--82963514 Score: 244
Period size: 40 Copynumber: 4.2 Consensus size: 40
82963339 GGACTAAGAT
* * * *
82963349 CCGAAGGCATTTGCGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
82963389 CTGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
82963429 CCGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
82963469 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
82963508 CCGAAGG
1 CCGAAGG
82963515 TACTTGGGTT
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 15 0.13
40 100 0.87
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:82970567 original size:40 final size:40
Alignment explanation
Indices: 82970519--82970724 Score: 299
Period size: 40 Copynumber: 5.2 Consensus size: 40
82970509 GGACTAAGAT
* *
82970519 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
82970559 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* **
82970599 TCGAAGGCATTTGT-CAGAGTTAAAATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGTC
*
82970639 CCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
82970679 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
82970718 CTGAAGG
1 CCGAAGG
82970725 TACTTGGGTT
Statistics
Matches: 150, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 15 0.10
40 135 0.90
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:82988719 original size:38 final size:38
Alignment explanation
Indices: 82988664--82988736 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
82988654 CAAAGTCCAT
* *
82988664 AGTATTTTTTTCCCATTTCCACTAAGGAACCATCAAAA
1 AGTAATTTTATCCCATTTCCACTAAGGAACCATCAAAA
**
82988702 AGTAATTTTATCCCATTTCCACTCGGGAACCATCA
1 AGTAATTTTATCCCATTTCCACTAAGGAACCATCA
82988737 CAGCCTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.33
Consensus pattern (38 bp):
AGTAATTTTATCCCATTTCCACTAAGGAACCATCAAAA
Found at i:82990920 original size:24 final size:24
Alignment explanation
Indices: 82990887--82990940 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
82990877 AAGGCTATCA
* *
82990887 GGAGAAGATTTGGGAGCTGATAAG
1 GGAGAAGATTTAGGAGATGATAAG
* *
82990911 GGAGAGGATTTAGGAGATGATTAG
1 GGAGAAGATTTAGGAGATGATAAG
82990935 GGAGAA
1 GGAGAA
82990941 CGGTGTTGGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.43, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGATGATAAG
Found at i:82992404 original size:27 final size:27
Alignment explanation
Indices: 82992364--82992474 Score: 161
Period size: 27 Copynumber: 4.1 Consensus size: 27
82992354 AGGAAGCGTC
* *
82992364 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
82992391 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
82992418 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
82992445 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
82992471 CTGG
1 CTGG
82992475 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
26 13 0.17
27 64 0.83
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:82996905 original size:42 final size:42
Alignment explanation
Indices: 82996784--82996990 Score: 173
Period size: 43 Copynumber: 4.9 Consensus size: 42
82996774 TAAGATGCCA
* * ** * *
82996784 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATTG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCATATCG
* * * **
82996826 ATGCCAATAGCCCAGTTATGGTCTTACACGATGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTATACGAAATCTCATATCG
* **
82996869 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCATTTTAA
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCA-TATCG
* * * * * * *
82996912 AAGCCATGTCTCAGATGTGGTCTTATACAAAATCACATGTCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCATATCG
* *
82996954 ATGCCATATTCCAAATATGGTCTTATAC-AGAATCTCA
1 ATGCCATATCCCAGATATGGTCTTATACGA-AATCTCA
82996991 ATAACCCTAA
Statistics
Matches: 130, Mismatches: 32, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
41 1 0.01
42 62 0.48
43 67 0.52
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTATACGAAATCTCATATCG
Found at i:82998102 original size:30 final size:30
Alignment explanation
Indices: 82998044--82998103 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
82998034 TTCCAGAGCC
* *
82998044 TAGGGGCAAACATGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
* *
82998074 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
82998104 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATACAAAAGTT
Found at i:83008086 original size:83 final size:83
Alignment explanation
Indices: 83007935--83008101 Score: 255
Period size: 83 Copynumber: 2.0 Consensus size: 83
83007925 CATAACTTCT
* * * * * *
83007935 GGCATGTGCTCTGACTTCAGATCTTACAATAGTATCTCGTGTTGCATCTCTACTACCACTTACGT
1 GGCAGGTGCTCTGACTTCAGATCCTACAACAGTATCTCGTGTTGCACCTCTACTACCACTCACAT
83008000 TTCCAACATTATGGAATG
66 TTCCAACATTATGGAATG
*
83008018 GGCAGGTGCTCT-AGCTTCAGATCCTACAGCAGTATCTCGTGTTGCACCTCTACTACCACTCACA
1 GGCAGGTGCTCTGA-CTTCAGATCCTACAACAGTATCTCGTGTTGCACCTCTACTACCACTCACA
83008082 TTTCCAACATTATGGAATG
65 TTTCCAACATTATGGAATG
83008101 G
1 G
83008102 TCTTTCTCTC
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
82 1 0.01
83 75 0.99
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (83 bp):
GGCAGGTGCTCTGACTTCAGATCCTACAACAGTATCTCGTGTTGCACCTCTACTACCACTCACAT
TTCCAACATTATGGAATG
Found at i:83013461 original size:43 final size:43
Alignment explanation
Indices: 83013322--83013466 Score: 143
Period size: 43 Copynumber: 3.4 Consensus size: 43
83013312 TATCCTAGAT
* ** * * * * *
83013322 ATGGTCTTAAATGTTTTCACATATCGATGCCACTATCCTAGAT
1 ATGGTCTTACATGTAATCTCATATCGATGCCAATGTCCCAGAC
* *
83013365 AGGGTCTTATATG-AATCGT-ATA-CGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATC-TCATATCGATGCCAATGTCCCAGAC
**
83013406 ATGGTCACACATGTAATCTCATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCTCATATCGATGCCAATGTCCCAGAC
*
83013449 ATGGTCTTACATGAAATC
1 ATGGTCTTACATGTAATC
83013467 ACACCTCGAA
Statistics
Matches: 82, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
41 25 0.30
42 12 0.15
43 45 0.55
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCTCATATCGATGCCAATGTCCCAGAC
Found at i:83015227 original size:21 final size:20
Alignment explanation
Indices: 83015201--83015241 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
83015191 ACTTGTCTAA
83015201 CTATCATCAATCATTCAAAAT
1 CTATCATCAATCA-TCAAAAT
83015222 CTATCATCAATCATCAAAAT
1 CTATCATCAATCATCAAAAT
83015242 TCATACATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (20 bp):
CTATCATCAATCATCAAAAT
Found at i:83016968 original size:27 final size:27
Alignment explanation
Indices: 83016938--83016991 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
83016928 AGAGAGGAAG
83016938 TACTAAGTTCAACATATGAAGATCATA
1 TACTAAGTTCAACATATGAAGATCATA
83016965 TACTAAGTTCAACATATGAAGATCATA
1 TACTAAGTTCAACATATGAAGATCATA
83016992 AATAAGCCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (27 bp):
TACTAAGTTCAACATATGAAGATCATA
Found at i:83020461 original size:27 final size:27
Alignment explanation
Indices: 83020428--83020878 Score: 266
Period size: 27 Copynumber: 16.7 Consensus size: 27
83020418 CCTCAAATTG
*
83020428 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *****
83020455 TAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ****
83020482 CAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *** *
83020509 TAGAATTACTATTTTACCCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ***** *
83020536 CAAAATTACTGTTTTACCCTCGATGTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * * *
83020563 CAAAATTACTAAAATACCATTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
83020590 CAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
83020616 GTAAAATTACCAAAATACCCTAG-TTTG
1 -TAAAATTACCAAAATACCCTCGATTTA
*** * *
83020643 TAAAATTTTTAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
* *
83020670 TAAAATTAGCAAAATACCCTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
83020697 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTA
*
83020724 TAAAATTACCAAAATACCACT-GGTTTA
1 TAAAATTACCAAAATACC-CTCGATTTA
* * * *
83020751 TGAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
83020778 TAAAATTACCAAAATACCATTGGTTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
83020805 TGAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
*
83020832 TAAAATTACCAAAATACCC-CTAATTTA
1 TAAAATTACCAAAATACCCTC-GATTTA
* * *
83020859 CAAAGTTACAAAAATACCCT
1 TAAAATTACCAAAATACCCT
83020879 TGACTTTCTA
Statistics
Matches: 340, Mismatches: 73, Indels: 21
0.78 0.17 0.05
Matches are distributed among these distances:
26 24 0.07
27 314 0.92
28 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:83020608 original size:54 final size:52
Alignment explanation
Indices: 83020550--83020934 Score: 261
Period size: 54 Copynumber: 7.1 Consensus size: 52
83020540 ATTACTGTTT
* *
83020550 TACCCTCGATGTACAAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAA
1 TACCCTCGATGT--AAAATTACCAAAATACCATTGGTTTATAAAATTACCAAAA
* * * ***
83020604 TACCCTCGATCAGTAAAATTACCAAAATACC-CTAGTTTGTAAAATTTTTAAAA
1 TACCCTCGAT--GTAAAATTACCAAAATACCATTGGTTTATAAAATTACCAAAA
* * * * ***
83020657 TACCCCTGGTTTGTAAAATTAGCAAAATACCCTCAATTTATAAAATTACCAAAA
1 TA-CCCTCG-ATGTAAAATTACCAAAATACCATTGGTTTATAAAATTACCAAAA
* * * * *
83020711 TACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTATGAAATTACCGAAA
1 TA-CCCTCG-ATGTAAAATTACCAAAATACCATTGGTTTATAAAATTACCAAAA
* * * *
83020765 TACCCTCAATTTGTAAAATTACCAAAATACCATTGGTTTGTGAAATTACCGAAA
1 TACCCTCGA--TGTAAAATTACCAAAATACCATTGGTTTATAAAATTACCAAAA
* ** ** * * *
83020819 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAGTTACAAAAA
1 TACCCTCGA--TGTAAAATTACCAAAATACCATTGGTTTATAAAATTACCAAAA
* * * * **
83020873 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGA---TGT-AAAATTACCA-AAATACCATTGGTTTATAAAATTACCAAAA
83020929 TACCCT
1 TACCCT
83020935 TGGTTTGTAG
Statistics
Matches: 268, Mismatches: 53, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
53 39 0.15
54 185 0.69
55 6 0.02
56 38 0.14
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (52 bp):
TACCCTCGATGTAAAATTACCAAAATACCATTGGTTTATAAAATTACCAAAA
Found at i:83020635 original size:81 final size:80
Alignment explanation
Indices: 83020564--83020934 Score: 349
Period size: 81 Copynumber: 4.6 Consensus size: 80
83020554 CTCGATGTAC
* * * *
83020564 AAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCACTGGTTTATAAAATTACCAAAATACCCTCAATTAGTAAAATTACCAA
83020629 AATACCCTAGTTTGT
66 AATACCCTAGTTTGT
** * * *
83020644 AAAATTTTTAAAATACCCCTGGTTTGTAAAATTAGCAAAATACCCTCAATTTA-TAAAATTACCA
1 AAAATTACTAAAATACCACTGGTTTATAAAATTACCAAAATACCCTCAA-TTAGTAAAATTACCA
83020708 AAATACCCCTAGTTTGT
65 AAATA-CCCTAGTTTGT
* * * *
83020725 AAAATTACCAAAATACCACTGGTTTATGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACCACTGGTTTATAAAATTACCAAAATACCCTCAATTAGTAAAATTACCAA
* *
83020790 AATACCATTGGTTTGT
66 AATACC-CTAGTTTGT
* ** ** *
83020806 GAAATTACCGAAATACC-CTCAATTTGTAAAATTACCAAAATACCC-CTAATT--TACAAAGTTA
1 AAAATTACTAAAATACCACT-GGTTTATAAAATTACCAAAATACCCTC-AATTAGTA-AAA-TTA
* * *
83020867 CAAAAATACCCTTGACTTTCT
62 CCAAAATACCC-T-AGTTTGT
* * **
83020888 AAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 -AAAATTACTA-AAATACCACTGGTTTATAAAATTACCAAAATACCCT
83020935 TGGTTTGTAG
Statistics
Matches: 235, Mismatches: 42, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
79 2 0.01
80 67 0.29
81 129 0.55
82 4 0.02
83 32 0.14
84 1 0.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACTAAAATACCACTGGTTTATAAAATTACCAAAATACCCTCAATTAGTAAAATTACCAA
AATACCCTAGTTTGT
Found at i:83020922 original size:27 final size:27
Alignment explanation
Indices: 83020889--83020940 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
83020879 TGACTTTCTA
83020889 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACT-GAAATACCATTGGTTTAC
*
83020916 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCATTGGTTT
83020941 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:83021024 original size:27 final size:27
Alignment explanation
Indices: 83020994--83021080 Score: 131
Period size: 27 Copynumber: 3.2 Consensus size: 27
83020984 ACCCCTATTA
*
83020994 GGTAAACAGACCGTAAAGCCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCTGTAG
83021021 GGTAAAGAGACCGTAAAGCCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCTGTAG
* *
83021048 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAGAGACCGTAA-AGCCCCTGTAG
83021075 GGTAAA
1 GGTAAA
83021081 ATGACGAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.18
Consensus pattern (27 bp):
GGTAAAGAGACCGTAAAGCCCCTGTAG
Found at i:83021915 original size:26 final size:26
Alignment explanation
Indices: 83021886--83022060 Score: 264
Period size: 26 Copynumber: 6.8 Consensus size: 26
83021876 GAGGAAGTGC
**
83021886 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
83021912 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
83021938 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
83021964 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
83021990 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
83022016 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
83022041 AAAAGGGCTT-TGCCGCAGTT
1 AAAAGGGCTTATGCCCCAGTT
83022061 ATTAAAGAGG
Statistics
Matches: 136, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
25 31 0.23
26 105 0.77
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:83021964 original size:52 final size:52
Alignment explanation
Indices: 83021886--83022060 Score: 318
Period size: 52 Copynumber: 3.4 Consensus size: 52
83021876 GAGGAAGTGC
83021886 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
83021938 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
83021990 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
83022041 AAAAGGGCTT-TGCCGCAGTT
1 AAAAGGGCTTATGCCCCAGTT
83022061 ATTAAAGAGG
Statistics
Matches: 120, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
50 8 0.07
51 25 0.21
52 87 0.73
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:83022264 original size:42 final size:42
Alignment explanation
Indices: 83022205--83022296 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
83022195 TAGTCTCCCC
* ** *
83022205 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
83022247 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
83022289 AAATGGGC
1 AAATGGGC
83022297 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:83023716 original size:53 final size:53
Alignment explanation
Indices: 83023649--83023754 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
83023639 AATATATAGG
83023649 ATTTTTCCTATGTAATTTATCACCTTTTTACTTAAATTTGTTGTTAAAACTAA
1 ATTTTTCCTATGTAATTTATCACCTTTTTACTTAAATTTGTTGTTAAAACTAA
*
83023702 ATTTTTCCTCTGTAATTTATCACCTTTTTACTTAAATTTGTTGTTAAAACTAA
1 ATTTTTCCTATGTAATTTATCACCTTTTTACTTAAATTTGTTGTTAAAACTAA
83023755 GTAATTGATT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.29, C:0.14, G:0.06, T:0.51
Consensus pattern (53 bp):
ATTTTTCCTATGTAATTTATCACCTTTTTACTTAAATTTGTTGTTAAAACTAA
Found at i:83027493 original size:16 final size:16
Alignment explanation
Indices: 83027458--83027496 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
83027448 ATGAATCGGC
* *
83027458 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATGCCA
*
83027474 AAAAGCCGAAATGCTA
1 AAAAGCCGAAATGCCA
83027490 AAAAGCC
1 AAAAGCC
83027497 AAAAGTTTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.21, G:0.21, T:0.10
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:83030650 original size:24 final size:24
Alignment explanation
Indices: 83030623--83030714 Score: 112
Period size: 24 Copynumber: 3.8 Consensus size: 24
83030613 TTGACATTCC
83030623 AATCCGCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
* * * *
83030647 AATCTGCACATATAGAGACATACA
1 AATCCGCACACATAGTGCCATACA
* * *
83030671 AATCCGTACACATAGTGTCGTACA
1 AATCCGCACACATAGTGCCATACA
*
83030695 AATTCGCACACATAGTGCCA
1 AATCCGCACACATAGTGCCA
83030715 AAATCATTTC
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (24 bp):
AATCCGCACACATAGTGCCATACA
Found at i:83031909 original size:17 final size:17
Alignment explanation
Indices: 83031887--83031920 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
83031877 CCCCACTTAA
*
83031887 TATATTATAACTTATTT
1 TATATTATAACATATTT
83031904 TATATTATAACATATTT
1 TATATTATAACATATTT
83031921 CCATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:83036101 original size:47 final size:47
Alignment explanation
Indices: 83036035--83036202 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 47
83036025 GATGCGAATG
* * **
83036035 TCTGAACTCGTCGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCA
1 TCTGAGCTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
* * *** * *
83036082 TCCGAGCTCGTTGATTTGAGTCCAAGTTC-ACTTATG-GA-T-GCGAA
1 TCTGAGCTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAG-GCA
*
83036126 TGTCTGAACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
1 --TCTGAGCTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
*
83036175 TCTGAGCTCGTTGAGTTGAGTCCGAGTT
1 TCTGAGCTCGTTGAGTTGAGTCCAAGTT
83036203 TGCTTATGGA
Statistics
Matches: 93, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 30 0.32
47 53 0.57
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (47 bp):
TCTGAGCTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA
Found at i:83036144 original size:93 final size:93
Alignment explanation
Indices: 83035985--83036212 Score: 366
Period size: 93 Copynumber: 2.5 Consensus size: 93
83035975 AGGATATTTG
* *
83035985 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTCGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTCGAG
**
83036050 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* * *
83036078 GGCATCCGAGCTCGTTGATTTGAGTCCAAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTCGAG
83036143 TTGAGTCCAAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* **
83036171 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
83036213 CGGGTTACAT
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 123 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTCGAG
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:83036149 original size:46 final size:46
Alignment explanation
Indices: 83035992--83036156 Score: 156
Period size: 46 Copynumber: 3.6 Consensus size: 46
83035982 TTGGGCATCC
* *
83035992 GAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCT
* ** *** * * *
83036038 GAACTCGTCGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA--TCC
1 GAACTCGTTGAGTTGAGTCCAAGTTC-ACTTATG-GA-T-GCGAATGTCT
* *
83036085 GAGCTCGTTGATTTGAGTCCAAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCT
83036131 GAACTCGTTGAGTTGAGTCCAAGTTC
1 GAACTCGTTGAGTTGAGTCCAAGTTC
83036157 GAGAGATGTA
Statistics
Matches: 90, Mismatches: 22, Indels: 14
0.71 0.17 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 53 0.59
47 27 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.32
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCT
Found at i:83050137 original size:28 final size:28
Alignment explanation
Indices: 83050102--83050156 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
83050092 TAATTTGTCG
83050102 ATTCAATCAAATCTAAAAATGGAAGACA
1 ATTCAATCAAATCTAAAAATGGAAGACA
83050130 ATTCAATCAAATCTAAAAATGGAAGAC
1 ATTCAATCAAATCTAAAAATGGAAGAC
83050157 TAACTCGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.53, C:0.15, G:0.11, T:0.22
Consensus pattern (28 bp):
ATTCAATCAAATCTAAAAATGGAAGACA
Found at i:83053691 original size:22 final size:22
Alignment explanation
Indices: 83053648--83053692 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
83053638 TTCCTGATGA
*
83053648 TTTCTTTCCCCATCTCTACCAT
1 TTTCTTTCCCAATCTCTACCAT
*
83053670 TTTCTTTCCTCAAT-TCTCCCAT
1 TTTCTTTCC-CAATCTCTACCAT
83053692 T
1 T
83053693 GCCACCGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.13, C:0.38, G:0.00, T:0.49
Consensus pattern (22 bp):
TTTCTTTCCCAATCTCTACCAT
Found at i:83055185 original size:24 final size:23
Alignment explanation
Indices: 83055154--83055198 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
83055144 TGATTTGGCC
*
83055154 ATATACATATATCCAT-TCATGGT
1 ATATACAT-TAACCATCTCATGGT
83055177 ATATCACATTAACCATCTCATG
1 ATAT-ACATTAACCATCTCATG
83055199 AACATTCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.36
Consensus pattern (23 bp):
ATATACATTAACCATCTCATGGT
Found at i:83061706 original size:169 final size:169
Alignment explanation
Indices: 83061424--83061765 Score: 621
Period size: 169 Copynumber: 2.0 Consensus size: 169
83061414 GCCACCGAGG
83061424 ATATAGTCTTCCACCAGTGGTATGCAATGTCCTTCAATAGTGACACCGCTCATTTCAAGCTTTCC
1 ATATAGTCTTCCACCAGTGGTATGCAATGTCCTTCAATAGTGACACCGCTCATTTCAAGCTTTCC
* * *
83061489 TTAAGAGTACATGAAAGTTCGTCGAGAACTCGCATGGTATTCTCGAGCCAAAATTCAGCACGTTC
66 TCAAGAGTACACGAAAGTTCGTCGAGAACTCGCATGGTATTATCGAGCCAAAATTCAGCACGTTC
*
83061554 CAGGTCATCATCAATCGTGGCCCTAAACTCTTTGACTCC
131 CAGGTCATCATCAATCGTGGCCCTAAACTCTTCGACTCC
*
83061593 ATATAGTCTTCCACCAGTGGTATGCAATGTCCTTCAATAGTGACACTGCTCATTTCAAGCTTTCC
1 ATATAGTCTTCCACCAGTGGTATGCAATGTCCTTCAATAGTGACACCGCTCATTTCAAGCTTTCC
*
83061658 TCAAGAGTACACGACAGTTCGTCGAGAACTCGCATGGTATTATCGAGCCAAAATTCAGCACGTTC
66 TCAAGAGTACACGAAAGTTCGTCGAGAACTCGCATGGTATTATCGAGCCAAAATTCAGCACGTTC
*
83061723 TAGGTCATCATCAATCGTGGCCCTAAACTCTTCGACTCC
131 CAGGTCATCATCAATCGTGGCCCTAAACTCTTCGACTCC
83061762 ATAT
1 ATAT
83061766 TTCCTAAGTT
Statistics
Matches: 166, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
169 166 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (169 bp):
ATATAGTCTTCCACCAGTGGTATGCAATGTCCTTCAATAGTGACACCGCTCATTTCAAGCTTTCC
TCAAGAGTACACGAAAGTTCGTCGAGAACTCGCATGGTATTATCGAGCCAAAATTCAGCACGTTC
CAGGTCATCATCAATCGTGGCCCTAAACTCTTCGACTCC
Found at i:83062478 original size:12 final size:12
Alignment explanation
Indices: 83062461--83062488 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
83062451 ATGTTAGGTA
83062461 TTTTATTTGAAG
1 TTTTATTTGAAG
83062473 TTTTATTTGAAG
1 TTTTATTTGAAG
83062485 TTTT
1 TTTT
83062489 GAGGTCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.64
Consensus pattern (12 bp):
TTTTATTTGAAG
Found at i:83071837 original size:40 final size:40
Alignment explanation
Indices: 83071753--83071936 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
83071743 TTGAATGCTG
* * * *
83071753 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
83071792 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * **
83071833 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
83071873 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
83071913 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
83071937 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 110 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:83071957 original size:39 final size:39
Alignment explanation
Indices: 83071833--83071983 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
83071823 AGTTATTAAT
* ** * * *
83071833 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAC-CAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
83071873 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
83071913 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
83071953 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
83071984 GAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:83078654 original size:14 final size:14
Alignment explanation
Indices: 83078635--83078661 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
83078625 CCGAAACTAG
83078635 AAAGAAAAAAAAAC
1 AAAGAAAAAAAAAC
83078649 AAAGAAAAAAAAA
1 AAAGAAAAAAAAA
83078662 TGCTCATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.04, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAAAAC
Found at i:83082794 original size:48 final size:48
Alignment explanation
Indices: 83082657--83082795 Score: 181
Period size: 48 Copynumber: 2.9 Consensus size: 48
83082647 ATGAGATCCC
* *
83082657 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAGATGAAAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCA-CTGATATGAAAGCCA
* * *** *
83082706 GTGTAAGACCATGTCTGGGACATGGCATTGGCGA-TAATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC-ACTGATATGAAAGCCA
83082754 GTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATATGA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATATGA
83082796 GACTTCGTAT
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
47 1 0.01
48 44 0.57
49 31 0.40
50 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATATGAAAGCCA
Found at i:83082809 original size:48 final size:47
Alignment explanation
Indices: 83082647--83082827 Score: 177
Period size: 48 Copynumber: 3.7 Consensus size: 47
83082637 ACCATGGTTA
* * *
83082647 ATGAGATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAG
1 ATGAGA-CTCGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CTGAT
* * *
83082696 ATGAAAGC-CAGTGTAAGACCATGTCTGGGACATGGCATTGGCGA-TAAT
1 ATGAGA-CTC-GTGTAAGACCATGTCTGGGACATGGCATCGGC-ACTGAT
* * *
83082744 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGAT
1 ATGAG-ACTCGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGAT
* * *
83082792 ATGAGACTTCGTATAAGACCATATCTGGGATATGGC
1 ATGAGAC-TCGTGTAAGACCATGTCTGGGACATGGC
83082828 GCCAACATGT
Statistics
Matches: 108, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
47 2 0.02
48 68 0.63
49 37 0.34
50 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
ATGAGACTCGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGAT
Found at i:83087942 original size:25 final size:26
Alignment explanation
Indices: 83087891--83087942 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
83087881 ATAAAAATTA
* *
83087891 ACCTAAGGGGTATAATGGTCATTTTC
1 ACCTAAGGGGTATAATGGTAATCTTC
83087917 ACCT-AGGGGTATAATGGTAATCTTC
1 ACCTAAGGGGTATAATGGTAATCTTC
83087942 A
1 A
83087943 TACTTGGGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (26 bp):
ACCTAAGGGGTATAATGGTAATCTTC
Found at i:83091612 original size:28 final size:28
Alignment explanation
Indices: 83091569--83091624 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
83091559 TTTAATTATA
*
83091569 AACCATCTGCGTTGTCCACATGGCCACC
1 AACCATCTGCGCTGTCCACATGGCCACC
* **
83091597 AACCATCTGTGCTGTCCATGTGGCCACC
1 AACCATCTGCGCTGTCCACATGGCCACC
83091625 CTGAATCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.20, C:0.38, G:0.20, T:0.23
Consensus pattern (28 bp):
AACCATCTGCGCTGTCCACATGGCCACC
Found at i:83092074 original size:28 final size:28
Alignment explanation
Indices: 83091999--83092085 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 28
83091989 GTGATAGAGT
*
83091999 CACCAAATACAGATA-TTGTGGC-TGAGC
1 CACCAAAAACAGATATTTGTGGCAT-AGC
* * *
83092026 CA-CTAGAACAGATATTCGTGGCATAGC
1 CACCAAAAACAGATATTTGTGGCATAGC
*
83092053 CACCAAAAACAAATATTTGTGGCATAGC
1 CACCAAAAACAGATATTTGTGGCATAGC
83092081 CACCA
1 CACCA
83092086 GAACGCTTCC
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
26 9 0.18
27 13 0.27
28 27 0.55
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (28 bp):
CACCAAAAACAGATATTTGTGGCATAGC
Found at i:83092082 original size:55 final size:53
Alignment explanation
Indices: 83091975--83092089 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 53
83091965 AGCATAACTG
* * * *
83091975 CCAGAACAGATATTGTGATAGAGTCACCAAATACAGATATTGTGGCTGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAAAAACAAATATTGTGGCTGAGCCA
* * *
83092028 CTAGAACAGATATTCGTGGCATAGCCACCAAAAACAAATATTTGTGGCAT-AGCCA
1 CCAGAACAGATATT-GTGACAGAGCCACCAAAAACAAATA-TTGTGGC-TGAGCCA
83092083 CCAGAAC
1 CCAGAAC
83092090 GCTTCCTTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 13 0.25
54 19 0.37
55 18 0.35
56 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAAAAACAAATATTGTGGCTGAGCCA
Found at i:83092225 original size:26 final size:27
Alignment explanation
Indices: 83092191--83092254 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
83092181 AAAAATTAAC
* *
83092191 CCTAGGGGTATAATGGTCATTTTCA-A
1 CCTAGGGGTATAATGGTAATCTTCATA
83092217 CCTAGGGGTATAATGGTAATCTTCATA
1 CCTAGGGGTATAATGGTAATCTTCATA
*
83092244 CTTAGGGGTAT
1 CCTAGGGGTAT
83092255 TTTATAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 23 0.68
27 11 0.32
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAATGGTAATCTTCATA
Found at i:83094272 original size:3 final size:3
Alignment explanation
Indices: 83094264--83094304 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
83094254 AAACATACGA
*
83094264 AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
83094305 CATCCAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:83101117 original size:15 final size:15
Alignment explanation
Indices: 83101076--83101138 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
83101066 GAAAACCAGA
*
83101076 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
* *
83101091 ACAGATG-AATCCAAG
1 ATA-AAGAAATCCAAG
*
83101106 ATAAAGATATCCAAG
1 ATAAAGAAATCCAAG
* *
83101121 GTACAGAAATCCAAG
1 ATAAAGAAATCCAAG
83101136 ATA
1 ATA
83101139 CCATATCATA
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
14 2 0.06
15 32 0.89
16 2 0.06
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.17
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:83108381 original size:46 final size:45
Alignment explanation
Indices: 83108331--83108506 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 45
83108321 TGGTTGAGCA
83108331 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
83108377 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GAA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAAG
*
83108424 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
83108470 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83108507 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 66 0.59
47 31 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:83108489 original size:93 final size:93
Alignment explanation
Indices: 83108330--83108498 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
83108320 ATGGTTGAGC
* * *
83108330 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
83108395 AGTCCGAGTTCGTGAAATGTAACTAGGA
66 AGTCCGAGTTCGTGAAATGTAACTAGGA
*
83108423 ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
83108488 AGTCCGAGTTC
66 AGTCCGAGTTC
83108499 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAAATGTAACTAGGA
Found at i:83120110 original size:29 final size:29
Alignment explanation
Indices: 83120082--83120172 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 29
83120072 CAGGATCAAT
* *
83120082 TCACATTCATATCGCCTATTAGGCCCAAT
1 TCACATTCATATGGCCTATTAGGCCCAAA
* *
83120111 TCATATTCATAGGGCCTATTAGGCCCAAA
1 TCACATTCATATGGCCTATTAGGCCCAAA
* * **
83120140 TCACCTTTATATGGCCCGTTAGGCCCAAA
1 TCACATTCATATGGCCTATTAGGCCCAAA
83120169 TCAC
1 TCAC
83120173 CTTATATTCA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
TCACATTCATATGGCCTATTAGGCCCAAA
Found at i:83123883 original size:74 final size:74
Alignment explanation
Indices: 83123794--83123941 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
83123784 ATGTGTGTTG
83123794 TGGGTGTCTGAGAAGTCTTAGGTTCAAAGCTTGTCTTGAACTAAAGTTTTTTGTTTTAATTGAAT
1 TGGGTGTCTGAGAAGTCTTAGGTTCAAAGCTTGTCTTGAACTAAAGTTTTTTGTTTTAATTGAAT
83123859 AGAGCCTTA
66 AGAGCCTTA
83123868 TGGGTGTCTGAGAAGTCTTAGGTTCAAAGCTTGTCTTGAACTAAAGTTTTTTGTTTTAATTGAAT
1 TGGGTGTCTGAGAAGTCTTAGGTTCAAAGCTTGTCTTGAACTAAAGTTTTTTGTTTTAATTGAAT
83123933 AGAGCCTTA
66 AGAGCCTTA
83123942 CTTTTATTCT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.41
Consensus pattern (74 bp):
TGGGTGTCTGAGAAGTCTTAGGTTCAAAGCTTGTCTTGAACTAAAGTTTTTTGTTTTAATTGAAT
AGAGCCTTA
Found at i:83131321 original size:49 final size:49
Alignment explanation
Indices: 83131261--83131442 Score: 220
Period size: 49 Copynumber: 3.7 Consensus size: 49
83131251 CTGGTATGCA
* * * * *
83131261 TAGTAGCTTGTACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACG
* * * * * * *
83131310 TAGTAGCTTGTACTTAGTACTACACACGTGATCACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAATTATCAGGTACACG
*
83131361 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACG
*
83131410 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
83131443 TCACAATAGT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 73 0.64
50 2 0.02
51 39 0.34
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACG
Found at i:83131379 original size:100 final size:100
Alignment explanation
Indices: 83131253--83131440 Score: 304
Period size: 100 Copynumber: 1.9 Consensus size: 100
83131243 GAAGCTATCT
* * * * *
83131253 GGTATGCATAGTAGCTTGTACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
83131318 TGTACTTAGTACTACACACGTGATCACAGTTTTCA
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
* *
83131353 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
83131418 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
83131441 CCTCACAATA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCA
Found at i:83137744 original size:53 final size:53
Alignment explanation
Indices: 83137686--83137794 Score: 209
Period size: 53 Copynumber: 2.1 Consensus size: 53
83137676 ATCTGTTCGA
*
83137686 ATCAGAACAAAGTGAGCTGATTTAGTCAATCTATCCACAATAACCCAGATTGC
1 ATCAGAACAAAGTAAGCTGATTTAGTCAATCTATCCACAATAACCCAGATTGC
83137739 ATCAGAACAAAGTAAGCTGATTTAGTCAATCTATCCACAATAACCCAGATTGC
1 ATCAGAACAAAGTAAGCTGATTTAGTCAATCTATCCACAATAACCCAGATTGC
83137792 ATC
1 ATC
83137795 TTTCTTGCTC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.25
Consensus pattern (53 bp):
ATCAGAACAAAGTAAGCTGATTTAGTCAATCTATCCACAATAACCCAGATTGC
Found at i:83144186 original size:28 final size:29
Alignment explanation
Indices: 83144153--83144267 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
83144143 TACCTGTATC
* *
83144153 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
83144181 GGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
83144210 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
83144239 TGGCCCGTTAGGCCC-AATCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
83144267 T
1 T
83144268 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 27 0.36
29 48 0.63
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:83144205 original size:57 final size:57
Alignment explanation
Indices: 83144144--83144259 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 57
83144134 AAATTCACAT
* *
83144144 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATAGGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATAGGGCCCATTAGGCCC-AATC
* * * *
83144201 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATAGGGCCCATTAGGCCCAATC
83144258 AC
1 AC
83144260 ATTCATATTC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 28 0.54
58 24 0.46
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATAGGGCCCATTAGGCCCAATC
Found at i:83154761 original size:78 final size:81
Alignment explanation
Indices: 83154637--83154820 Score: 243
Period size: 78 Copynumber: 2.3 Consensus size: 81
83154627 GCTACTCGTT
* *
83154637 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
83154701 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
83154717 CAAATGCCTTCGGG-CTTAACCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
83154780 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
83154796 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83154821 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
77 3 0.03
78 47 0.52
79 27 0.30
80 14 0.15
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:83154820 original size:40 final size:40
Alignment explanation
Indices: 83154618--83154820 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
83154608 TCGAATTTAA
** *
83154618 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83154658 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83154698 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
83154737 CCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
83154776 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
83154816 CCGGA
1 CCGGA
83154821 CATCATTCAA
Statistics
Matches: 144, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
37 2 0.01
38 23 0.16
39 23 0.16
40 85 0.59
41 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:83162577 original size:40 final size:40
Alignment explanation
Indices: 83162540--83162724 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
83162530 GCTACTCGTT
*
83162540 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
83162580 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
83162620 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
83162659 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
83162700 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83162725 CATCATTCAA
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.02
39 35 0.27
40 81 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:83162651 original size:79 final size:82
Alignment explanation
Indices: 83162540--83162724 Score: 256
Period size: 79 Copynumber: 2.3 Consensus size: 82
83162530 GCTACTCGTT
*
83162540 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
83162603 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
**
83162620 CAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
83162683 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
83162700 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83162725 CATCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.60
80 35 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:83166381 original size:26 final size:26
Alignment explanation
Indices: 83166352--83166405 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
83166342 AATCTCATAT
* * *
83166352 CTGTAGGCTTGTATTACTGAAATGCC
1 CTGTAGGCTAGAATTACTGAAATACC
*
83166378 CTGTAGGGTAGAATTACTGAAATACC
1 CTGTAGGCTAGAATTACTGAAATACC
83166404 CT
1 CT
83166406 TCGTTTACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (26 bp):
CTGTAGGCTAGAATTACTGAAATACC
Found at i:83166443 original size:27 final size:27
Alignment explanation
Indices: 83166413--83166542 Score: 91
Period size: 27 Copynumber: 4.8 Consensus size: 27
83166403 CCTTCGTTTA
*
83166413 CAAAATTACCAAAATACTCTCGATTAG
1 CAAAATTACCAAAATACTCTCGATTTG
* * * *
83166440 CAAAATGATCGAAATAC-CCCTGATTTG
1 CAAAATTACCAAAATACTCTC-GATTTG
* * *
83166467 TAAAATTACCGAAATACTCTCAATTTG
1 CAAAATTACCAAAATACTCTCGATTTG
* * * * *
83166494 TAAAATTATCAAAATACCCCCGATTTT
1 CAAAATTACCAAAATACTCTCGATTTG
* ** *
83166521 TAAAATTATTAAAATACCCTCG
1 CAAAATTACCAAAATACTCTCG
83166543 TAGTGTAAAA
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.02
27 79 0.95
28 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
CAAAATTACCAAAATACTCTCGATTTG
Found at i:83166472 original size:54 final size:53
Alignment explanation
Indices: 83166414--83166566 Score: 180
Period size: 54 Copynumber: 2.8 Consensus size: 53
83166404 CTTCGTTTAC
* * *
83166414 AAAATTACCAAAATACTCTCGATTAGCAAAATGATCGAAATACCCCTGATTTGT
1 AAAATTACCAAAATACTCTCGATT-GTAAAATTATCGAAATACCCCCGATTTGT
* * * *
83166468 AAAATTACCGAAATACTCTCAATTTGTAAAATTATCAAAATACCCCCGATTTTT
1 AAAATTACCAAAATACTCTCGA-TTGTAAAATTATCGAAATACCCCCGATTTGT
** * *
83166522 AAAATTATTAAAATACCCTCGTAGTGTAAAATTATCGAAATACCC
1 AAAATTACCAAAATACTCTCG-ATTGTAAAATTATCGAAATACCC
83166567 TTGTAGTGTA
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
54 80 0.96
55 3 0.04
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (53 bp):
AAAATTACCAAAATACTCTCGATTGTAAAATTATCGAAATACCCCCGATTTGT
Found at i:83166551 original size:27 final size:27
Alignment explanation
Indices: 83166492--83166580 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
83166482 ACTCTCAATT
* *
83166492 TGTAAAATTATCAAAATACCCCCG-ATT
1 TGTAAAATTATCAAAATACCCTCGTA-G
* *
83166519 TTTAAAATTATTAAAATACCCTCGTAG
1 TGTAAAATTATCAAAATACCCTCGTAG
* *
83166546 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCAAAATACCCTCGTAG
83166573 TGTAAAAT
1 TGTAAAAT
83166581 GACCAGCATA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (27 bp):
TGTAAAATTATCAAAATACCCTCGTAG
Found at i:83166889 original size:41 final size:41
Alignment explanation
Indices: 83166844--83166923 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
83166834 AGGAAGTATA
*
83166844 TGAGGATCACATGGTTGCTTGATGACCGTGGATCCACTGAT
1 TGAGGATCACATGGTTGCTTGACGACCGTGGATCCACTGAT
** *
83166885 TGAGGATCGTATTGTTGCTTGACGACCGTGGATCCACTG
1 TGAGGATCACATGGTTGCTTGACGACCGTGGATCCACTG
83166924 GTGGCTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (41 bp):
TGAGGATCACATGGTTGCTTGACGACCGTGGATCCACTGAT
Found at i:83167103 original size:22 final size:22
Alignment explanation
Indices: 83167071--83167129 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
83167061 TGATCTGATC
*
83167071 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
83167093 ATGGCTTTGTGACATCTTAACT
1 ATGGCTTTGTGCCAACCTAAAT
*
83167115 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
83167130 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:83174712 original size:47 final size:47
Alignment explanation
Indices: 83174661--83175088 Score: 333
Period size: 47 Copynumber: 9.0 Consensus size: 47
83174651 TTAGGATTTT
*
83174661 ATGTGATGAATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGACATGC-TATATGTGGTAAGGCCGAATGGCCA
83174708 ATGTGATGAATGTGAG-CATGC-ATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGACATGCTATATGTG-G-TAAGGCCGAATGGCCA
* * * * *
83174755 ATGTGGTGAATATGA-ACATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAGACATG-CTATATGTGGTAAGGCCGAATGGCCA
** * * *
83174802 ATGTGAAAAATGTATGAGAAATG-TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGAGACATGCTATATGTGGTAAGGCCGAATGGCCA
* * * * * *
83174850 ATGTGA-AATATGTATGAGATATGC-ATATGTGGTAAAGCTGAACGGTCA
1 ATGTGATGA-ATG--TGAGACATGCTATATGTGGTAAGGCCGAATGGCCA
* * *
83174898 ATGTGAAATATATATATGAGATATGC-ATATGTGGTAAGGCCGAATGGCCA
1 ATGTG--AT-GA-ATGTGAGACATGCTATATGTGGTAAGGCCGAATGGCCA
83174948 ATGTGATGAATGTGAG-CATGC-ATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGACATGCTATATGTG-G-TAAGGCCGAATGGCCA
* * * *
83174995 ATGTGGTGAATATGAGATATGC-ATATGTGGTACA-GCCGAATGGTCA
1 ATGTGATGAATGTGAGACATGCTATATGTGGTA-AGGCCGAATGGCCA
* * * *
83175041 ATGTGAAATATATATATGAGATATG-TATATGTGGTAAAGCCGAATGGC
1 ATGTG--AT-GA-ATGTGAGACATGCTATATGTGGTAAGGCCGAATGGC
83175089 TAGTGTGAAA
Statistics
Matches: 324, Mismatches: 32, Indels: 47
0.80 0.08 0.12
Matches are distributed among these distances:
45 18 0.06
46 25 0.08
47 110 0.34
48 84 0.26
49 12 0.04
50 71 0.22
52 4 0.01
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAGACATGCTATATGTGGTAAGGCCGAATGGCCA
Found at i:83174763 original size:25 final size:25
Alignment explanation
Indices: 83174688--83174763 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
83174678 ATGCATATAT
83174688 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
83174713 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
83174735 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
83174760 GTGA
1 GTGA
83174764 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:83174840 original size:48 final size:48
Alignment explanation
Indices: 83174778--83175104 Score: 344
Period size: 48 Copynumber: 6.8 Consensus size: 48
83174768 GAACATGTAT
* *
83174778 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
*
83174826 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* * *
83174874 ATATGTGGTAAAGCTGAACGG-TCAATGTGAAATATATATATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGATATGC
* * ** *
83174924 ATATGTGGTAAGGCCGAATGGCCAATGTGATGAATG--TGAG-CATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* * ***
83174969 ATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAA--TATGAGATATGC
1 ATATGTG-G-TAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* * *
83175017 ATATGTGGTACAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGATATGC
* *
83175067 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTA
83175105 AGCGATGTGC
Statistics
Matches: 236, Mismatches: 28, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
45 11 0.05
46 22 0.09
47 32 0.14
48 91 0.39
49 1 0.00
50 78 0.33
51 1 0.00
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.28
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
Found at i:83174950 original size:193 final size:195
Alignment explanation
Indices: 83174725--83175080 Score: 506
Period size: 193 Copynumber: 1.8 Consensus size: 195
83174715 GAATGTGAGC
* * *
83174725 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGGTAAA
1 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAA
* *
83174790 GCCGAATGGCTAATGTGAAAAATGTATGAGAAATGTATATGTGGTAAAGCCGAATGG-CTAATGT
66 GCCGAATGGCCAATGTGAAAAA--TATGAGAAATGCATATGTGGTAAAGCCGAATGGTC-AATGT
*
83174854 G-AA-ATATGTATGAGATATGCATATGTGGTAAAGCTGAACGGTCAATGTGAAATATATATATGA
128 GAAATATATATATGAGATATGCATATGTGGTAAAGCTGAACGGTCAATGTGAAATATATATATGA
83174917 GAT
193 GAT
* * * *
83174920 ATGCATATGTG-G-TAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAG
1 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAA
*** * *
83174983 GCCGAATGGCCAATGTGGTGAATATGAGATATGCATATGTGGTACAGCCGAATGGTCAATGTGAA
66 GCCGAATGGCCAATGTGAAAAATATGAGAAATGCATATGTGGTAAAGCCGAATGGTCAATGTGAA
*
83175048 ATATATATATGAGATATGTATATGTGGTAAAGC
131 ATATATATATGAGATATGCATATGTGGTAAAGC
83175081 CGAATGGCTA
Statistics
Matches: 142, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
191 36 0.25
192 3 0.02
193 91 0.64
194 1 0.01
195 11 0.08
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.28
Consensus pattern (195 bp):
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAA
GCCGAATGGCCAATGTGAAAAATATGAGAAATGCATATGTGGTAAAGCCGAATGGTCAATGTGAA
ATATATATATGAGATATGCATATGTGGTAAAGCTGAACGGTCAATGTGAAATATATATATGAGAT
Found at i:83175096 original size:143 final size:142
Alignment explanation
Indices: 83174661--83175096 Score: 494
Period size: 143 Copynumber: 3.0 Consensus size: 142
83174651 TTAGGATTTT
* * * *
83174661 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAG-C
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAGAT
* * * *
83174725 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTG--GT-GA-ATATGA-ACATGTATATATGTG
66 ATGCATATGTG-G-TAA-GCCGAATGGTCAATGTGAAATATATATATGAGATATG--TATATGTG
83174785 GTAAAGCCGAATGGCTA
126 GTAAAGCCGAATGGCTA
** * * * * *
83174802 ATGTGAAAAATGTATGAGAAATGTATATGTG-G-TAAAGCCGAATGGCTAATGTGAAAT-ATGTA
1 ATGTGATGAATG--TGAG-CATGCATATGTGTGATAAGGCCGAATGGCCAATGTG--ATGA-ATA
* * *
83174864 TGAGATATGCATATGTGGTAAAGCTGAACGGTCAATGTGAAATATATATATGAGATATGCATATG
60 TGAGATATGCATATGTGGT-AAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATG
* *
83174929 TGGTAAGGCCGAATGGCCA
124 TGGTAAAGCCGAATGGCTA
*
83174948 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAGAT
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAGAT
83175013 ATGCATATGTGGTACAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAA
66 ATGCATATGTGGTA-AGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAA
83175078 AGCCGAATGGCTA
130 AGCCGAATGGCTA
*
83175091 GTGTGA
1 ATGTGA
83175097 AATATGTAAG
Statistics
Matches: 244, Mismatches: 34, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
141 10 0.04
142 20 0.08
143 115 0.47
144 25 0.10
145 31 0.13
146 33 0.14
147 6 0.02
148 4 0.02
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (142 bp):
ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAGAT
ATGCATATGTGGTAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAA
GCCGAATGGCTA
Found at i:83175143 original size:240 final size:238
Alignment explanation
Indices: 83174684--83175145 Score: 687
Period size: 240 Copynumber: 1.9 Consensus size: 238
83174674 GAACATGCAT
83174684 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAA
* *
83174749 TGGCCAATGTGGTGAATATGAACATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATG
66 TGGCCAATGTGGTGAATATGAACATG-ACATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATA
* *
83174814 TATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
130 TATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAAGAGATATGCATATA
* **
83174879 TGGTAAAGCTGAACGGTCAATGTGAAATATATATATGAGATATGC
195 TGGT-AAGCCGAACGACCAATGTGAAATATATATATGAGATATGC
*
83174924 ATATGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAA
* *
83174989 TGGCCAATGTGGTGAATATGAGATATG-CATATGTGGTACAGCCGAATGG-TCAATGTGAAATAT
66 TGGCCAATGTGGTGAATATGA-ACATGACATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-
* * * * *
83175052 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAAGCGATGTGCGT
127 ATATATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAAGAGATATGCAT
* *
83175117 ATATTGT-GGCCGAACGACCAAATGTGAAA
192 ATATGGTAAGCCGAACGACC-AATGTGAAA
83175146 GGTGTGTATT
Statistics
Matches: 200, Mismatches: 17, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
238 1 0.00
239 37 0.19
240 95 0.47
241 67 0.34
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.27
Consensus pattern (238 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAA
TGGCCAATGTGGTGAATATGAACATGACATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATAT
ATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAAGAGATATGCATATAT
GGTAAGCCGAACGACCAATGTGAAATATATATATGAGATATGC
Found at i:83175396 original size:37 final size:37
Alignment explanation
Indices: 83175251--83175395 Score: 218
Period size: 37 Copynumber: 3.9 Consensus size: 37
83175241 GGAAATATAT
*
83175251 TCCGGGTAAGACCCGATGACTACGCGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
83175288 TCTGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
83175325 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
83175362 TCCGGGTAAGACCCGATAACTTCGTGTGGTGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
83175396 TCGTCTGAGC
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:83182465 original size:42 final size:43
Alignment explanation
Indices: 83182407--83182516 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
83182397 TAGATTTATG
* * * * *
83182407 TGTAAGACCATATCTGGGACATTGGCATC-GTATTTGATTTCA
1 TGTAAGACCCTGTCTGGGACATTGGCATCAATATTTGAATACA
*
83182449 TGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGAATACA
1 TGTAAGACCCTGTCTGGGACATTGGCATCAATATTTGAATACA
* *
83182492 CGTAAGACCAC-GTCTGGGACGTTGG
1 TGTAAGACC-CTGTCTGGGACATTGG
83182517 AATTGTATGA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 26 0.46
43 30 0.53
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACATTGGCATCAATATTTGAATACA
Found at i:83187858 original size:30 final size:30
Alignment explanation
Indices: 83187813--83187872 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
83187803 ATTTAATACG
*
83187813 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
83187843 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
83187873 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:83202204 original size:14 final size:15
Alignment explanation
Indices: 83202185--83202218 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
83202175 TATTTTAAAT
83202185 AATAAAAAAA-ATAA
1 AATAAAAAAACATAA
83202199 AATAAAAAAACATAA
1 AATAAAAAAACATAA
83202214 AATAA
1 AATAA
83202219 TAAGTAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (15 bp):
AATAAAAAAACATAA
Found at i:83202208 original size:15 final size:15
Alignment explanation
Indices: 83202188--83202218 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
83202178 TTTAAATAAT
83202188 AAAAAAAATAAAATA
1 AAAAAAAATAAAATA
*
83202203 AAAAAACATAAAATA
1 AAAAAAAATAAAATA
83202218 A
1 A
83202219 TAAGTAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAAAAAATAAAATA
Found at i:83207563 original size:13 final size:13
Alignment explanation
Indices: 83207545--83207581 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
83207535 CGGCAGGGAC
83207545 ACGCCCGTGTGAA
1 ACGCCCGTGTGAA
*
83207558 ACGCCCGTGTGAC
1 ACGCCCGTGTGAA
83207571 ACGCCCGTGTG
1 ACGCCCGTGTG
83207582 CAATTACTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.16, C:0.35, G:0.32, T:0.16
Consensus pattern (13 bp):
ACGCCCGTGTGAA
Found at i:83212972 original size:77 final size:78
Alignment explanation
Indices: 83212844--83212998 Score: 303
Period size: 77 Copynumber: 2.0 Consensus size: 78
83212834 CTAAAATGGG
83212844 TGCTTTCTTAAAAAGATTAGTATAGTGATATATTTGAGATTACAGTATCTCTACTTTCTTATGAT
1 TGCTTTCTTAAAAAGATTAGTATAGTGATATATTTGAGATTACAGTATCTCTACTTTCTTATGAT
83212909 TCTATATGGTTAT
66 TCTATATGGTTAT
83212922 TGCTTTCTTAAAAAGATT-GTATAGTGATATATTTGAGATTACAGTATCTCTACTTTCTTATGAT
1 TGCTTTCTTAAAAAGATTAGTATAGTGATATATTTGAGATTACAGTATCTCTACTTTCTTATGAT
83212986 TCTATATGGTTAT
66 TCTATATGGTTAT
83212999 CTGTCAAAAA
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
77 59 0.77
78 18 0.23
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.46
Consensus pattern (78 bp):
TGCTTTCTTAAAAAGATTAGTATAGTGATATATTTGAGATTACAGTATCTCTACTTTCTTATGAT
TCTATATGGTTAT
Found at i:83215876 original size:40 final size:40
Alignment explanation
Indices: 83215832--83216019 Score: 263
Period size: 40 Copynumber: 4.7 Consensus size: 40
83215822 GCTACTTGCT
83215832 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
83215872 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACACGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
83215912 CAAATGCCATCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
83215952 CAAATGCCTTC-GGCCTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* *
83215991 AAAATGCCTTCGAGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
83216020 CATTCGAATA
Statistics
Matches: 130, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.25
40 96 0.74
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:83223963 original size:40 final size:40
Alignment explanation
Indices: 83223919--83224027 Score: 200
Period size: 40 Copynumber: 2.7 Consensus size: 40
83223909 GCTACTTGCT
83223919 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
**
83223959 CAAATGCCTTCAAGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
83223999 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
83224028 CATTCGAATA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:83233110 original size:5 final size:5
Alignment explanation
Indices: 83233100--83233187 Score: 65
Period size: 5 Copynumber: 16.6 Consensus size: 5
83233090 AATCCTCCTA
*
83233100 TTTAT TTTA- TTTAGT TTTATT TTTAT TTTAT TTTATT TTTATT TTTCT
1 TTTAT TTTAT TTTA-T TTTA-T TTTAT TTTAT TTTA-T TTTA-T TTTAT
*
83233148 TTTGATT TTTAT TTTCAT TTCAAT TTTA- -TTAT TTTAT TTT
1 TTT-A-T TTTAT TTT-AT TT-TAT TTTAT TTTAT TTTAT TTT
83233188 GAAAGACATA
Statistics
Matches: 69, Mismatches: 5, Indels: 18
0.75 0.05 0.20
Matches are distributed among these distances:
3 3 0.04
4 4 0.06
5 30 0.43
6 28 0.41
7 4 0.06
ACGTcount: A:0.18, C:0.03, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:83233125 original size:16 final size:15
Alignment explanation
Indices: 83233100--83233187 Score: 72
Period size: 17 Copynumber: 5.5 Consensus size: 15
83233090 AATCCTCCTA
83233100 TTTA-TTTTATTTAGT
1 TTTATTTTTATTTA-T
83233115 TTTATTTTTATTTTAT
1 TTTATTTTTA-TTTAT
*
83233131 TTTATTTTTATTTTTCT
1 TTTATTTTTA--TTTAT
83233148 TTTGATTTTTATTTTCAT
1 TTT-ATTTTTA-TTT-AT
* *
83233166 TTCAATTTTA-TTAT
1 TTTATTTTTATTTAT
83233180 TTTATTTT
1 TTTATTTT
83233188 GAAAGACATA
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
14 8 0.13
15 6 0.10
16 16 0.26
17 22 0.35
18 10 0.16
ACGTcount: A:0.18, C:0.03, G:0.02, T:0.76
Consensus pattern (15 bp):
TTTATTTTTATTTAT
Found at i:83233130 original size:11 final size:11
Alignment explanation
Indices: 83233100--83233187 Score: 74
Period size: 12 Copynumber: 7.7 Consensus size: 11
83233090 AATCCTCCTA
83233100 TTTATTTTA--
1 TTTATTTTATT
83233109 TTTAGTTTTATT
1 TTTA-TTTTATT
83233121 TTTATTTTA-T
1 TTTATTTTATT
83233131 TTTATTTTTATT
1 TTTA-TTTTATT
*
83233143 TTTCTTTTGATT
1 TTTATTTT-ATT
83233155 TTTATTTTCATT
1 TTTATTTT-ATT
**
83233167 TCAATTTTATTAT
1 TTTATTTTA-T-T
83233180 TTTATTTT
1 TTTATTTT
83233188 GAAAGACATA
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
9 4 0.06
10 10 0.16
11 15 0.23
12 28 0.44
13 7 0.11
ACGTcount: A:0.18, C:0.03, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:83233157 original size:7 final size:6
Alignment explanation
Indices: 83233109--83233167 Score: 68
Period size: 6 Copynumber: 10.2 Consensus size: 6
83233099 ATTTATTTTA
* * *
83233109 TTTAGT TTTATT TTTA-T TTTA-T TTTATT TTTATT TTTCTT TTGATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
83233155 TTTATT TTCATT T
1 TTTATT TTTATT T
83233168 CAATTTTATT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
5 10 0.22
6 36 0.78
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:83236510 original size:40 final size:40
Alignment explanation
Indices: 83236426--83236609 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
83236416 TTGAATGCTG
* * * *
83236426 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
83236465 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * **
83236506 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
83236546 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
83236586 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
83236610 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 110 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:83236630 original size:39 final size:39
Alignment explanation
Indices: 83236506--83236656 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
83236496 AGTTATTAAT
* ** * * *
83236506 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAC-CAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
83236546 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
83236586 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
83236626 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
83236657 GAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Done.