Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 261 of 325
Found at i:83240659 original size:44 final size:44
Alignment explanation
Indices: 83240594--83240680 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
83240584 TTGATCTCTC
* *
83240594 AAAGTCCATGGTTGTACCATGGAAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGACGGA
* * *
83240638 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGACGG
1 AAAGTCCATGGTT-ATAACATGGAAATTAAGGAAGAATTGACGG
83240681 TTAAGGATGC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGACGGA
Found at i:83240883 original size:47 final size:47
Alignment explanation
Indices: 83240832--83240990 Score: 158
Period size: 47 Copynumber: 3.2 Consensus size: 47
83240822 CAAGGATAAG
83240832 GTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCAT
1 GTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCAT
**** * * *
83240879 GTAAGACCATGCCAAG-ACATGGCATTCATAAGTTCTATAAGACAAGGATACCAT
1 GTAAGACCATGTTTGGAACATGGCATT--T--G----GTAAGATAAGGATATCAT
*
83240933 GTTAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCAT
1 GTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCAT
*
83240980 GTAAGATCATG
1 GTAAGACCATG
83240991 CCAAGGCATG
Statistics
Matches: 86, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
46 10 0.12
47 36 0.42
48 1 0.01
50 1 0.01
51 1 0.01
53 1 0.01
54 26 0.30
55 10 0.12
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (47 bp):
GTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCAT
Found at i:83240991 original size:101 final size:100
Alignment explanation
Indices: 83240817--83241045 Score: 370
Period size: 101 Copynumber: 2.3 Consensus size: 100
83240807 GCATTGGCAC
*
83240817 TAAGACAAGGATA-AGGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATGT
1 TAAGACAAGGATACATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATGT
83240881 AAGACCATGCCAAGACATGGCATTCATAAGTTCTA
66 AAGACCATGCCAAGACATGGCATTCATAAGTTCTA
*
83240916 TAAGACAAGGATACCATGTTAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATA-CATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
* * *
83240981 TAAGATCATGCCAAGGCATGGCATTGATAAGTTCTA
65 TAAGACCATGCCAAGACATGGCATTCATAAGTTCTA
* *
83241017 TAAGGCAAGGAAATCATGTAAGACCATGT
1 TAAGACAAGGATA-CATGTAAGACCATGT
83241046 CAAGACATGG
Statistics
Matches: 119, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
99 13 0.11
101 106 0.89
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.26
Consensus pattern (100 bp):
TAAGACAAGGATACATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATGT
AAGACCATGCCAAGACATGGCATTCATAAGTTCTA
Found at i:83241093 original size:55 final size:55
Alignment explanation
Indices: 83240969--83241284 Score: 369
Period size: 53 Copynumber: 5.8 Consensus size: 55
83240959 TTGGTAAGAT
* * *
83240969 AAGGATATCATGTAAGATCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCA
* * *
83241023 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGCA
* * * *
83241079 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG-A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCA
* * *
83241131 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTATTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGCA
* * *
83241187 AAGG-TCCCATGTAAGACCATGCCAATG-CATGGCATTGGTGAGTTC-ATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCATTGATAAGTTCTATAAGGCA
* * * *
83241239 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
83241285 AAAAAGGAAA
Statistics
Matches: 228, Mismatches: 25, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
52 10 0.04
53 83 0.36
54 42 0.18
55 83 0.36
56 10 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCA
Found at i:83241161 original size:108 final size:108
Alignment explanation
Indices: 83240977--83241283 Score: 497
Period size: 108 Copynumber: 2.8 Consensus size: 108
83240967 ATAAGGATAT
* * * * *
83240977 CATGTAAGATCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
83241042 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
*
83241086 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
* *
83241151 TGTCAAGACATGGCATTGATGAGTTATTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
* *
83241194 CATGTAAGACCATGCCAATGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
* *
83241259 TGTCAAGACATGGCAATGGTAAGTT
66 TGTCAAGACATGGCATTGATAAGTT
83241284 CAAAAAGGAA
Statistics
Matches: 184, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 149 0.81
109 35 0.19
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
Found at i:83243782 original size:28 final size:28
Alignment explanation
Indices: 83243742--83243795 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
83243732 CCTGTGTTAG
83243742 TACAACCAGAATCAGGTAAAGAATTTAA
1 TACAACCAGAATCAGGTAAAGAATTTAA
* *
83243770 TACAACTAGAATCGGGTAAAGAATTT
1 TACAACCAGAATCAGGTAAAGAATTT
83243796 GTAATATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (28 bp):
TACAACCAGAATCAGGTAAAGAATTTAA
Found at i:83247883 original size:44 final size:42
Alignment explanation
Indices: 83247821--83247982 Score: 141
Period size: 43 Copynumber: 3.8 Consensus size: 42
83247811 TCGATATGTG
* *
83247821 ATTTTGTGTAAGAA-CATGTCTGGTACATTGGCATCGAATTGA
1 ATTTAGTGTAA-AACCATGTCTGGGACATTGGCATCGAATTGA
*
83247863 GATTTACGTGTAAAACCATGTCTGGGACATTGGCATCGTATTGA
1 -ATTTA-GTGTAAAACCATGTCTGGGACATTGGCATCGAATTGA
* * * * *
83247907 TTTTA-TGTAAGACCCTGTCTGGGACAATGGCATTGATATTTGA
1 ATTTAGTGTAAAACCATGTCTGGGACATTGGCATCGA-A-TTGA
** * * *
83247950 ATACA-TGTAAGACCACGTCTGGGACGTTGGCAT
1 ATTTAGTGTAAAACCATGTCTGGGACATTGGCAT
83247983 TGTACAAGCT
Statistics
Matches: 99, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
41 26 0.26
42 1 0.01
43 40 0.40
44 32 0.32
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (42 bp):
ATTTAGTGTAAAACCATGTCTGGGACATTGGCATCGAATTGA
Found at i:83247972 original size:43 final size:41
Alignment explanation
Indices: 83247827--83247986 Score: 133
Period size: 44 Copynumber: 3.8 Consensus size: 41
83247817 TGTGATTTTG
* * * * * *
83247827 TGTAAGAACATGTCTGGTACATTGGCATCGAATTGAGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATTGTATTGA-A--TACA
* * * * **
83247871 TGTAAAACCATGTCTGGGACATTGGCATCGTATTGATTTTA
1 TGTAAGACCACGTCTGGGACATTGGCATTGTATTGAATACA
*
83247912 TGTAAGACC-CTGTCTGGGACAATGGCATTGATATTTGAATACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATTG-TA-TTGAATACA
*
83247955 TGTAAGACCACGTCTGGGACGTTGGCATTGTA
1 TGTAAGACCACGTCTGGGACATTGGCATTGTA
83247987 CAAGCTTGCC
Statistics
Matches: 95, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
41 26 0.27
42 4 0.04
43 32 0.34
44 33 0.35
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACATTGGCATTGTATTGAATACA
Found at i:83249494 original size:37 final size:37
Alignment explanation
Indices: 83249444--83249522 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
83249434 TTATTACGAA
* *
83249444 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
83249481 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
83249518 GTCTT
1 GTCTT
83249523 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:83249719 original size:47 final size:47
Alignment explanation
Indices: 83249641--83250161 Score: 880
Period size: 47 Copynumber: 11.1 Consensus size: 47
83249631 CCCTTCGGGA
* * * * * * *
83249641 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83249688 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83249735 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83249782 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83249829 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83249876 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83249923 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83249970 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83250017 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83250064 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83250111 CTTATCACATATATACACTTTCACATTCATCACATCTGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83250158 CTTA
1 CTTA
83250162 CTATCATTTC
Statistics
Matches: 456, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 456 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83256096 original size:42 final size:42
Alignment explanation
Indices: 83256037--83256198 Score: 182
Period size: 42 Copynumber: 3.8 Consensus size: 42
83256027 GGGTTTTGTA
*
83256037 TGATTTCGTGTAAGACCATATCTGGGATATGGCATTGATATG
1 TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
* * *
83256079 TGATTTCGTGTAAGACCATGTCTGGGACATGGCATCAATATG
1 TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
* ** * *
83256121 AGACATCGTGTAAGACCATAGCTAGGGA-ATCGGGATCGATATG
1 TGATTTCGTGTAAGACCATATCT-GGGATAT-GGCATCGATATG
** * *
83256164 TGATCCCATGTAATACCATATCTGGGATATGGCAT
1 TGATTTCGTGTAAGACCATATCTGGGATATGGCAT
83256199 TGGTATCTTG
Statistics
Matches: 98, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 66 0.67
43 32 0.33
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
Found at i:83256182 original size:85 final size:84
Alignment explanation
Indices: 83256042--83256198 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 84
83256032 TTGTATGATT
* * ** * *
83256042 TCGTGTAAGACCATATCTGGGATATGGCATTGATATGTGATTTCGTGTAAGACCATGTCTGGGAC
1 TCGTGTAAGACCATAGCTGGGATATGGCATCGATATGTGATCCCATGTAAGACCATATCTGGGAC
83256107 ATGGCATCAATATGAGACA
66 ATGGCATCAATATGAGACA
* *
83256126 TCGTGTAAGACCATAGCTAGGGA-ATCGGGATCGATATGTGATCCCATGTAATACCATATCTGGG
1 TCGTGTAAGACCATAGCT-GGGATAT-GGCATCGATATGTGATCCCATGTAAGACCATATCTGGG
*
83256190 ATATGGCAT
64 ACATGGCAT
83256199 TGGTATCTTG
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 19 0.31
85 43 0.69
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCATAGCTGGGATATGGCATCGATATGTGATCCCATGTAAGACCATATCTGGGAC
ATGGCATCAATATGAGACA
Found at i:83257505 original size:12 final size:12
Alignment explanation
Indices: 83257488--83257515 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
83257478 GCCACGACAT
83257488 GCCCGTGTCCTA
1 GCCCGTGTCCTA
83257500 GCCCGTGTCCTA
1 GCCCGTGTCCTA
83257512 GCCC
1 GCCC
83257516 ATGTGCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.46, G:0.25, T:0.21
Consensus pattern (12 bp):
GCCCGTGTCCTA
Found at i:83262146 original size:46 final size:46
Alignment explanation
Indices: 83262011--83262179 Score: 166
Period size: 47 Copynumber: 3.6 Consensus size: 46
83262001 GTAAGGTGCC
* * *
83262011 GATGCCATGTCCCAGATATGGTCTTACACTGGCTCATATCTCAAG-T
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGCT
* * *
83262057 CGATGCCATGTCCCAGATATGGTCTTACATTGAC-TATCATCTCATAGCT
1 -GATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCA-AGCT
* * *
83262106 GGTGCATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAA-GCT
*
83262152 GATGCATGTCCTAGACAT-GTCTTACACT
1 GATGCATGTCCCAGACATGGTCTTACACT
83262180 AGCTCACACA
Statistics
Matches: 105, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.01
46 46 0.44
47 52 0.50
48 5 0.05
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGCT
Found at i:83266733 original size:19 final size:20
Alignment explanation
Indices: 83266696--83266733 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
83266686 TGGGCTATTT
83266696 TGTAAATGTTGTAAAATAAG
1 TGTAAATGTTGTAAAATAAG
*
83266716 TGTAAATG-TGTGAAATAA
1 TGTAAATGTTGTAAAATAA
83266734 TTGCATTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (20 bp):
TGTAAATGTTGTAAAATAAG
Found at i:83274059 original size:27 final size:27
Alignment explanation
Indices: 83274029--83274206 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83274019 ATATTGAGTC
* * * *
83274029 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
83274056 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83274083 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
83274111 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
83274138 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
83274165 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83274192 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83274207 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:83274168 original size:82 final size:81
Alignment explanation
Indices: 83274050--83274205 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83274040 TGCTATATAA
* *
83274050 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
83274115 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
83274132 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
83274196 CACTTAGTGC
65 CACTTAGTGC
83274206 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83282060 original size:27 final size:27
Alignment explanation
Indices: 83282030--83282207 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83282020 ATATTGAGTC
* * * *
83282030 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
83282057 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83282084 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
83282112 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
83282139 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
83282166 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83282193 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83282208 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:83282169 original size:82 final size:81
Alignment explanation
Indices: 83282051--83282206 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83282041 TGCTATATAA
* *
83282051 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
83282116 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
83282133 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
83282197 CACTTAGTGC
65 CACTTAGTGC
83282207 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83287951 original size:22 final size:23
Alignment explanation
Indices: 83287926--83287968 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
83287916 TATCCCCACA
*
83287926 TGGAGTGTAG-GGCTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
83287948 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
83287969 GTAGGATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.02, G:0.53, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:83289970 original size:25 final size:25
Alignment explanation
Indices: 83289902--83289963 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 25
83289892 GCACTATCGA
*
83289902 GAAGCTCACAAAGAGCCAAATTTAACGG
1 GAAGCTCACGAAGAGCC---TTTAACGG
83289930 GAAGCTCACGAAGAGCCTTTAATCGG
1 GAAGCTCACGAAGAGCCTTTAA-CGG
*
83289956 GATGCTCA
1 GAAGCTCA
83289964 TAAGAGCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 5 0.16
26 10 0.32
28 16 0.52
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (25 bp):
GAAGCTCACGAAGAGCCTTTAACGG
Found at i:83292244 original size:35 final size:35
Alignment explanation
Indices: 83292189--83292262 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 35
83292179 AGTGTACAGA
*
83292189 CTTTGTTAACTGGTCCACAATTACCCAAATGGCAT
1 CTTTGTTAACCGGTCCACAATTACCCAAATGGCAT
*
83292224 CTTTGTTAACCGGTCGACAATTACCCAAATGGCAT
1 CTTTGTTAACCGGTCCACAATTACCCAAATGGCAT
83292259 CTTT
1 CTTT
83292263 CTTCTTCGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (35 bp):
CTTTGTTAACCGGTCCACAATTACCCAAATGGCAT
Found at i:83298937 original size:163 final size:163
Alignment explanation
Indices: 83298755--83299090 Score: 645
Period size: 163 Copynumber: 2.1 Consensus size: 163
83298745 ATCACATATT
83298755 CATATAATCAAGCTTACCTTCTTGTGATGATTTATATTTTACTCAAAATCAATTTAACCAAACCT
1 CATATAATCAAGCTTACCTTCTTGTGATGATTTATATTTTACTCAAAATCAATTTAACCAAACCT
*
83298820 GATACATGTATATATTAAATATGATATAACTTTATATTATCTAACCAAAATATAACATTATTAGT
66 GATACATGTATATATTAAACATGATATAACTTTATATTATCTAACCAAAATATAACATTATTAGT
83298885 CATTCCAAAAGCTAGATTACAAACATCCATTTA
131 CATTCCAAAAGCTAGATTACAAACATCCATTTA
83298918 CATATAATCAAGCTTACCTTCTTGTGATGATTTATATTTTACTCAAAATCAATTTAACCAAACCT
1 CATATAATCAAGCTTACCTTCTTGTGATGATTTATATTTTACTCAAAATCAATTTAACCAAACCT
*
83298983 TATACATGTATATATTAAACATGATATAACTTTATATTATCTAACCAAAATATAACATTATTAGT
66 GATACATGTATATATTAAACATGATATAACTTTATATTATCTAACCAAAATATAACATTATTAGT
83299048 CATTCCAAAAGCTAGATTACAAACATCCATTTA
131 CATTCCAAAAGCTAGATTACAAACATCCATTTA
*
83299081 CATATTATCA
1 CATATAATCA
83299091 TTGGTAAAAT
Statistics
Matches: 170, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 170 1.00
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (163 bp):
CATATAATCAAGCTTACCTTCTTGTGATGATTTATATTTTACTCAAAATCAATTTAACCAAACCT
GATACATGTATATATTAAACATGATATAACTTTATATTATCTAACCAAAATATAACATTATTAGT
CATTCCAAAAGCTAGATTACAAACATCCATTTA
Found at i:83304804 original size:22 final size:22
Alignment explanation
Indices: 83304779--83304820 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
83304769 TGATGGATGC
*
83304779 GTATTGAGTTA-TAATATGTAAT
1 GTATT-AGTTAGTAAAATGTAAT
83304801 GTATTAGTTAGTAAAATGTA
1 GTATTAGTTAGTAAAATGTA
83304821 TGCCATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (22 bp):
GTATTAGTTAGTAAAATGTAAT
Found at i:83305521 original size:33 final size:33
Alignment explanation
Indices: 83305479--83305548 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
83305469 CGGATGTGTC
83305479 ATGATTTATTGATATATGTGCTTGGTTATTCGA
1 ATGATTTATTGATATATGTGCTTGGTTATTCGA
83305512 ATGATTTATTGATATATGTGCTTGGTTATTCGA
1 ATGATTTATTGATATATGTGCTTGGTTATTCGA
83305545 ATGA
1 ATGA
83305549 CATCCGGGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.26, C:0.06, G:0.21, T:0.47
Consensus pattern (33 bp):
ATGATTTATTGATATATGTGCTTGGTTATTCGA
Found at i:83305653 original size:39 final size:40
Alignment explanation
Indices: 83305550--83305755 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
83305540 TTCGAATGAC
* * *
83305550 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAT
* * *
83305591 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGCTACTA-
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAT
* *
83305630 ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 A-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* *
83305670 ATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* * * *
83305710 AACCGGGCTATGTCCCGAAGGCATTTGAGTGAG-TAGCTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT
83305750 ATCCGG
1 ATCCGG
83305756 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.25
40 78 0.57
41 25 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:83305758 original size:79 final size:78
Alignment explanation
Indices: 83305552--83305769 Score: 219
Period size: 79 Copynumber: 2.7 Consensus size: 78
83305542 CGAATGACAT
* * *
83305552 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
83305616 TGTACGAGCTACTAATT
62 TGTACGAGCTACTAATA
* * *
83305633 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCAGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
* *
83305696 GTGCGAGTTACT-ATAA
63 GTACGAGCTACTAAT-A
* * *
83305712 CCGGGCTATGTCCCGAAGGCATTTGAGTGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGCTATATCCGGTT-AAGTCCGAAGG
83305770 TATGTGATTC
Statistics
Matches: 114, Mismatches: 15, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
78 3 0.03
79 57 0.50
80 44 0.39
81 10 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTA
CGAGCTACTAATA
Found at i:83307867 original size:27 final size:27
Alignment explanation
Indices: 83307825--83307936 Score: 104
Period size: 27 Copynumber: 4.1 Consensus size: 27
83307815 AGGAAGCGTC
*
83307825 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
83307852 CTGGTGGCTCTACCACATATT-TCT-ATT
1 CTGGTGGCTCTGCCACA-ATTATCTGA-T
* *
83307879 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
83307907 CTGGTGACTCTGTCAC-ATTTTCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
83307933 CTGG
1 CTGG
83307937 CAGCCAAGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
26 9 0.13
27 43 0.61
28 17 0.24
29 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:83307929 original size:54 final size:54
Alignment explanation
Indices: 83307828--83307934 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
83307818 AAGCGTCCTG
*
83307828 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATTTCTATTCTA
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATTTCTATTCTA
* * ** *
83307882 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTTCT
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATTTCTATTCT
83307935 GGCAGCCAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATTTCTATTCTA
Found at i:83314344 original size:22 final size:22
Alignment explanation
Indices: 83314305--83314347 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
83314295 ATCACTCTTC
* *
83314305 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
83314327 CTCTCCATTTGTTATTCTTTT
1 CTCTCCATTTATTATTCTTTT
83314348 CTTCTTCTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:83315627 original size:27 final size:27
Alignment explanation
Indices: 83315587--83315679 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
83315577 AGGAAGCGTC
*
83315587 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
83315614 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* * *
83315641 CTGGTGGCTCTACGACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
*
83315669 CTGGTGACTCT
1 CTGGTGGCTCT
83315680 ATCACATTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
26 3 0.05
27 39 0.70
28 14 0.25
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:83315679 original size:28 final size:27
Alignment explanation
Indices: 83315587--83315691 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 27
83315577 AGGAAGCGTC
* *
83315587 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTACCAC-ATTATCTGTAT
* *
83315614 CTGGTGGCTCTGCCACATATTTCTGT-T
1 CTGGTGGCTCTACCACAT-TATCTGTAT
*
83315641 CTGGTGGCTCTACGACGATTATCTGTAT
1 CTGGTGGCTCTACCAC-ATTATCTGTAT
* *
83315669 CTGGTGACTCTATCACATTATCT
1 CTGGTGGCTCTACCACATTATCT
83315692 ATTCTGGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 2 0.03
27 48 0.73
28 16 0.24
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTACCACATTATCTGTAT
Found at i:83317966 original size:20 final size:20
Alignment explanation
Indices: 83317943--83318003 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
83317933 CTTTTCCCTC
*
83317943 ATTTCTTTTTTTTAATTTCA
1 ATTTATTTTTTTTAATTTCA
*
83317963 ATTTATTTTTCTT-ATTTACA
1 ATTTATTTTTTTTAATTT-CA
*
83317983 CTTTATTTTTATTTCAATTTC
1 ATTTATTTTT-TTT-AATTTC
83318004 TTTTCTTTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 4 0.12
20 22 0.67
21 2 0.06
22 1 0.03
23 4 0.12
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTATTTTTTTTAATTTCA
Found at i:83321898 original size:39 final size:39
Alignment explanation
Indices: 83321844--83321922 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
83321834 AATAAATGGA
83321844 AATAACTCTGGAATACAAAACAATCCCAGAAAGGAACCT
1 AATAACTCTGGAATACAAAACAATCCCAGAAAGGAACCT
83321883 AATAACTCTGGAATACAAAACAATCCCAGAAAGGAACCT
1 AATAACTCTGGAATACAAAACAATCCCAGAAAGGAACCT
83321922 A
1 A
83321923 CATTATAGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.49, C:0.23, G:0.13, T:0.15
Consensus pattern (39 bp):
AATAACTCTGGAATACAAAACAATCCCAGAAAGGAACCT
Found at i:83324660 original size:19 final size:17
Alignment explanation
Indices: 83324638--83324688 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 17
83324628 CTTAAAATTT
83324638 AAAAATTTTAAAAAATACA
1 AAAAATTTTAAAAAAT--A
*
83324657 AAAATATTTTTAAAAATA
1 AAAA-ATTTTAAAAAATA
83324675 AAAAATTATTAAAA
1 AAAAATT-TTAAAA
83324689 TTATTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 3 0.11
18 10 0.36
19 4 0.14
20 11 0.39
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAAATTTTAAAAAATA
Found at i:83324679 original size:28 final size:28
Alignment explanation
Indices: 83324636--83324710 Score: 71
Period size: 28 Copynumber: 2.7 Consensus size: 28
83324626 TTCTTAAAAT
* * *
83324636 TTAAAAATTTTAAAAAATACAAAAATATT
1 TTAAAAATATAAAAAAATACAAAAAT-TA
* * **
83324665 TTTAAAA-ATAAAAAATTATTAAAATTA
1 TTAAAAATATAAAAAAATACAAAAATTA
83324692 TTAAAAATATAAAAAAATA
1 TTAAAAATATAAAAAAATA
83324711 TTTTTAAAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
27 7 0.19
28 23 0.64
29 6 0.17
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (28 bp):
TTAAAAATATAAAAAAATACAAAAATTA
Found at i:83324684 original size:20 final size:20
Alignment explanation
Indices: 83324638--83324680 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
83324628 CTTAAAATTT
83324638 AAAA-ATTTTAAAAAATACA
1 AAAATATTTTAAAAAATACA
*
83324657 AAAATATTTTTAAAAATA-A
1 AAAATATTTTAAAAAATACA
83324676 AAAAT
1 AAAAT
83324681 TATTAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAATATTTTAAAAAATACA
Found at i:83327781 original size:96 final size:93
Alignment explanation
Indices: 83327586--83327947 Score: 298
Period size: 94 Copynumber: 3.8 Consensus size: 93
83327576 GGGTGTAATA
**
83327586 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATCAAGTCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATCTCGTCGATG-CATGTCCCAG
*
83327650 ACATGGTCTTACACT-A-ACTAT-TGAAATCGAGG
64 ACATGGTCTTACACTGACAC-ATCT--CAT--AGG
* * * *
83327682 CCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCTGTTTCGATGTCATATCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTC-G--TCGATG-CATGTCCC
83327747 AGACATGGTCTTACACTGACACATCTCATA-G
62 AGACATGGTCTTACACTGACACATCTCATAGG
*
83327778 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ACATCTCGAGGCTGATGCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTC--GTC-GATGCATGTCCCA
* * * *
83327839 AACAT-GTCTTACACTAGCTCTCATCTCA-ATG
63 GACATGGTCTTACACT-G-ACACATCTCATAGG
* * * * * * * * *
83327870 CTGTTGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCGACGCATGTCCCAGT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CATCTCGTCGATGCATGTCCCAGA
83327935 CAT-GTCTTACACT
65 CATGGTCTTACACT
83327948 AGCGCACAAA
Statistics
Matches: 223, Mismatches: 26, Indels: 36
0.78 0.09 0.13
Matches are distributed among these distances:
90 10 0.04
91 15 0.07
92 23 0.10
93 16 0.07
94 52 0.23
95 19 0.09
96 45 0.20
97 5 0.02
99 32 0.14
100 3 0.01
101 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCGTCGATGCATGTCCCAGAC
ATGGTCTTACACTGACACATCTCATAGG
Found at i:83327817 original size:46 final size:48
Alignment explanation
Indices: 83327586--83327947 Score: 242
Period size: 46 Copynumber: 7.7 Consensus size: 48
83327576 GGGTGTAATA
83327586 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATC-CATCAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAT--AG
* ** * * *
83327633 TCGATGCCATGTCCCAGACATGGTCTTACACTAACTATTGAAATC-GA-GG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TT-ACATCTCATAG
* * *
83327682 CCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC-T-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTCATAG
* * * *
83327730 TTTCGATGTCATATCCCAGACATGGTCTTACACTGAC--ACATCTCATAG
1 --CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCATAG
*
83327778 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGA-GG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-ATAG
* * *
83327824 CTGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCT-CATCTCA-ATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCATA-G
* * * * *
83327870 CTGTTGTCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-ATGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCATAG
* *
83327918 CCGACG-CATGTCCCAGTCAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
83327948 AGCGCACAAA
Statistics
Matches: 258, Mismatches: 36, Indels: 43
0.77 0.11 0.13
Matches are distributed among these distances:
44 12 0.05
45 14 0.05
46 72 0.28
47 62 0.24
48 30 0.12
49 34 0.13
50 30 0.12
52 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCATAG
Found at i:83327931 original size:140 final size:144
Alignment explanation
Indices: 83327587--83327948 Score: 425
Period size: 140 Copynumber: 2.5 Consensus size: 144
83327577 GGTGTAATAC
* *
83327587 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCA-AGTCGATGCCATGTCCCAGA
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCATAGCCGATG-CATGTCCCAGA
** *
83327651 CATGGTCTTACACTAACTATTGAAATCGAGGCCGACGCCATGTCCCAGACATGGTCTTACACTAG
64 CAT-GTCTTACACTAACTATACAAATCGAGGCCGACGCCATGTCCCAAACATGGTCTTACACTAG
** *
83327716 CTCTCATATCTCTGTTT
128 CTCTCATATCAATGTCT
* * *
83327733 CGATGTCATATCCCAGACATGGTCTTACACTGACACATC-TCATAGCCGATGCATGTCCCAGACA
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATAGCCGATGCATGTCCCAGACA
** ** * *
83327797 TGTCTTACACTGGCT-TACATCTCGAGGCTGATG-CATGTCCCAAACAT-GTCTTACACTAGCTC
66 TGTCTTACACTAACTATACAAATCGAGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTC
*
83327859 TCATCTCAATG-CT
131 TCATATCAATGTCT
* * * *
83327872 -GTTGTCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATATGGCCGACGCATGTCCCAGT
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATA--GCCGATGCATGTCCCAGA
83327935 CATGTCTTACACTA
64 CATGTCTTACACTA
83327949 GCGCACAAAT
Statistics
Matches: 186, Mismatches: 26, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
137 2 0.01
138 35 0.19
139 1 0.01
140 52 0.28
141 13 0.07
142 12 0.06
143 12 0.06
144 17 0.09
145 8 0.04
146 34 0.18
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (144 bp):
CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATAGCCGATGCATGTCCCAGACA
TGTCTTACACTAACTATACAAATCGAGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTC
TCATATCAATGTCT
Found at i:83336286 original size:9 final size:9
Alignment explanation
Indices: 83336272--83336314 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
83336262 ACAATATGAC
83336272 AAAAGTAAA
1 AAAAGTAAA
83336281 AAAAGTAACA
1 AAAAGTAA-A
83336291 AAAA--AAA
1 AAAAGTAAA
*
83336298 TAAAGTAAA
1 AAAAGTAAA
83336307 AAAAGTAA
1 AAAAGTAA
83336315 CAGGATGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
7 4 0.14
8 2 0.07
9 18 0.62
10 5 0.17
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.12
Consensus pattern (9 bp):
AAAAGTAAA
Found at i:83336296 original size:13 final size:14
Alignment explanation
Indices: 83336278--83336317 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
83336268 TGACAAAAGT
83336278 AAAAAAAGTAACA-
1 AAAAAAAGTAACAG
83336291 AAAAAAA-TAA-AG
1 AAAAAAAGTAACAG
83336303 TAAAAAAAGTAACAG
1 -AAAAAAAGTAACAG
83336318 GATGGTTGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.04
12 3 0.13
13 14 0.61
14 3 0.13
15 2 0.09
ACGTcount: A:0.75, C:0.05, G:0.10, T:0.10
Consensus pattern (14 bp):
AAAAAAAGTAACAG
Found at i:83349197 original size:40 final size:40
Alignment explanation
Indices: 83349114--83349259 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
83349104 TCGAATGATG
* * *
83349114 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
83349154 TCCGGACTAAGAT-CCGAAGGCATCTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
83349194 TCCGGGTTAAGTCCCTAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
83349235 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83349260 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 79 0.89
41 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83349266 original size:80 final size:80
Alignment explanation
Indices: 83349114--83349282 Score: 184
Period size: 80 Copynumber: 2.1 Consensus size: 80
83349104 TCGAATGATG
* *
83349114 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATCT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATCT
**
83349179 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
83349194 TCCGGGTTAAGTCCCTAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCTGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGATCC-GAAGGCAT
* *
83349257 TTGAACGAGTAGCTATA
64 CTGAACGAGTAGCTAAA
83349274 TCC-GGTTAA
1 TCCGGGTTAA
83349283 ATTCTGAAGG
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
79 11 0.15
80 57 0.76
81 7 0.09
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATCT
GAACGAGTAGCTAAA
Found at i:83351762 original size:42 final size:41
Alignment explanation
Indices: 83351710--83351838 Score: 204
Period size: 42 Copynumber: 3.1 Consensus size: 41
83351700 TTAAGCCCGG
*
83351710 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCAC-AAGCCTGCGGGATTTAACCCGGATAT
*
83351752 ATATATTACCAGCACGAAGCCTGCGGGACTTAACCCGGATAT
1 ATATATTACCAGCAC-AAGCCTGCGGGATTTAACCCGGATAT
*
83351794 ATATATTACCAGCACAGAGCCTGCGGGCTTTAACCCGGATAT
1 ATATATTACCAGCACA-AGCCTGCGGGATTTAACCCGGATAT
83351836 ATA
1 ATA
83351839 ATATATAGAG
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 1 0.01
42 80 0.99
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (41 bp):
ATATATTACCAGCACAAGCCTGCGGGATTTAACCCGGATAT
Found at i:83359586 original size:42 final size:41
Alignment explanation
Indices: 83359534--83359662 Score: 204
Period size: 42 Copynumber: 3.1 Consensus size: 41
83359524 TTAAGCCCGG
*
83359534 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCAC-AAGCCTGCGGGATTTAACCCGGATAT
*
83359576 ATATATTACCAGCACGAAGCCTGCGGGACTTAACCCGGATAT
1 ATATATTACCAGCAC-AAGCCTGCGGGATTTAACCCGGATAT
*
83359618 ATATATTACCAGCACAGAGCCTGCGGGCTTTAACCCGGATAT
1 ATATATTACCAGCACA-AGCCTGCGGGATTTAACCCGGATAT
83359660 ATA
1 ATA
83359663 ATATATAGAG
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 1 0.01
42 80 0.99
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (41 bp):
ATATATTACCAGCACAAGCCTGCGGGATTTAACCCGGATAT
Found at i:83376574 original size:13 final size:13
Alignment explanation
Indices: 83376558--83376583 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83376548 TTGGACACAA
83376558 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
83376571 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
83376584 CACACTGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.23, T:0.38
Consensus pattern (13 bp):
GCCCGTGTCCTTT
Found at i:83377265 original size:37 final size:37
Alignment explanation
Indices: 83377223--83377296 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
83377213 AGGAAAGAAA
83377223 GTAAGCATAAAGCTTAGTAAGTTGCATATAAATAAAT
1 GTAAGCATAAAGCTTAGTAAGTTGCATATAAATAAAT
83377260 GTAAGCATAAAGCTTAGTAAGTTGCATATAAATAAAT
1 GTAAGCATAAAGCTTAGTAAGTTGCATATAAATAAAT
83377297 ATACCACAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.30
Consensus pattern (37 bp):
GTAAGCATAAAGCTTAGTAAGTTGCATATAAATAAAT
Found at i:83378797 original size:85 final size:85
Alignment explanation
Indices: 83378654--83378810 Score: 201
Period size: 85 Copynumber: 1.8 Consensus size: 85
83378644 AACAAGTACA
* * * * * *
83378654 ATGCCGACGTCCCGGACGTGGTCTTATATGTAATTCAATATCGATGCCTCTATCCCAGACAGGGT
1 ATGCCGACGTCCCAGACATGGTCTTATACGTAATTCAATATCGAGGCCTCTATCCCAGACACGAT
83378719 CTTACACGAAATTAGATAAG
66 CTTACACGAAATTAGATAAG
* * *
83378739 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACACG
1 ATGCCGACGTCCCAGACATGGTCTTATACGT-AAT-TCAATATCGAGGCCTCTATCCCAGACACG
83378802 ATCTTACAC
64 ATCTTACAC
83378811 AATGACTCAG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 55 0.90
86 4 0.07
87 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTATACGTAATTCAATATCGAGGCCTCTATCCCAGACACGAT
CTTACACGAAATTAGATAAG
Found at i:83383619 original size:27 final size:27
Alignment explanation
Indices: 83383585--83383762 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83383575 TAAATTGTAC
83383585 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
83383612 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83383638 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
83383666 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
83383694 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83383721 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
83383748 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83383763 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:83383699 original size:82 final size:81
Alignment explanation
Indices: 83383586--83383741 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83383576 AAATTGTACA
* *
83383586 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
83383650 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
83383667 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
83383732 TGCGAGTTGA
65 TGCGAATTGA
83383742 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:83383753 original size:82 final size:81
Alignment explanation
Indices: 83383582--83383762 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
83383572 GGTTAAATTG
* *
83383582 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
83383647 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
83383663 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
83383727 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
83383745 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
83383763 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:83391462 original size:27 final size:27
Alignment explanation
Indices: 83391431--83391606 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
83391421 TAAATTGTAC
83391431 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
83391458 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83391484 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
83391512 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
83391540 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83391567 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
83391594 AGCACTGAGTGTG
1 AGCACTAAGTGTG
83391607 TGGACTTAAT
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:83391545 original size:82 final size:81
Alignment explanation
Indices: 83391432--83391587 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83391422 AAATTGTACA
* *
83391432 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
83391496 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
83391513 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
83391578 TGCGAGTTGA
65 TGCGAATTGA
83391588 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:83391599 original size:82 final size:81
Alignment explanation
Indices: 83391428--83391606 Score: 225
Period size: 82 Copynumber: 2.2 Consensus size: 81
83391418 GATTAAATTG
* *
83391428 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
83391493 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
83391509 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
83391573 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
83391591 TATAGCACTGAGTGTG
1 TACAGCACTAAGTGTG
83391607 TGGACTTAAT
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:83399997 original size:43 final size:43
Alignment explanation
Indices: 83399949--83400083 Score: 116
Period size: 43 Copynumber: 3.2 Consensus size: 43
83399939 TCCCGGATGT
* *
83399949 GGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGACAA
1 GGTCTTATACGTAATTCAATATCGATGCCTATGTCCCAGACAA
* * * * * *
83399992 GGTCTTACACG-AAATCAGATA-CGATGTCGATGTCACAGACAT
1 GGTCTTATACGTAATTCA-ATATCGATGCCTATGTCCCAGACAA
* * *
83400034 GGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACAC
1 GGTCTTATACGT-AAT-TCAATATCGATGCCTATGTCCCAGACAA
83400077 GGTCTTA
1 GGTCTTA
83400084 CACGATGTCT
Statistics
Matches: 71, Mismatches: 16, Indels: 10
0.73 0.16 0.10
Matches are distributed among these distances:
42 32 0.45
43 35 0.49
44 2 0.03
45 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
GGTCTTATACGTAATTCAATATCGATGCCTATGTCCCAGACAA
Found at i:83401437 original size:46 final size:46
Alignment explanation
Indices: 83401292--83401516 Score: 172
Period size: 46 Copynumber: 4.8 Consensus size: 46
83401282 AGCTGTTACA
* * * * * *
83401292 CCGATGCCATGTCCCAAACATAGTCTTACACTAGCTCTTGCGTATCCATG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCAC-T-CGTCTCAAGG
* * *
83401342 TCGATGCTATGTCCCAGACATGGTCTTACACTGACA-T-GTCTCGTA-G
1 CCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCACTCGTCTC-AAGG
* * *
83401388 CCGATGCATGTCCTAGACATGTTTTACACTGGCTTAC-C-TCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC--ACTCGTCTCAAGG
* * * *
83401434 CCGATGCATGTCCCGGACATGTCTTACATTGGCACTCGTTTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCGTCTCAAGG
83401480 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCAC
83401517 ACAAATTATC
Statistics
Matches: 142, Mismatches: 22, Indels: 24
0.76 0.12 0.13
Matches are distributed among these distances:
44 13 0.09
45 14 0.10
46 57 0.40
47 14 0.10
48 15 0.11
49 1 0.01
50 28 0.20
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCGTCTCAAGG
Found at i:83403926 original size:27 final size:28
Alignment explanation
Indices: 83403881--83403959 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 28
83403871 AAAATTCTTT
* * *
83403881 AGCTCAGCTTTATGAGAGCTCTCTGATA
1 AGCTCTGCTTTGTGTGAGCTCTCTGATA
* *
83403909 AG-TTTGCTTTGTGTGAGCTCTCT-ATT
1 AGCTCTGCTTTGTGTGAGCTCTCTGATA
* *
83403935 GGCTCTACTTTGTGTGAGCTCTCTG
1 AGCTCTGCTTTGTGTGAGCTCTCTG
83403960 CTTAGCTTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.07
27 36 0.88
28 2 0.05
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (28 bp):
AGCTCTGCTTTGTGTGAGCTCTCTGATA
Found at i:83408165 original size:46 final size:47
Alignment explanation
Indices: 83408083--83408185 Score: 129
Period size: 46 Copynumber: 2.2 Consensus size: 47
83408073 GACAGGACAG
* * *
83408083 GACAGAAATGAGCCATGTAAGTCCATATCAGTTATAT-GGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGTTATATAGGCATTGGA
*
83408129 GACAGGAATGAGCCATGTAAGCCCATATTA-TATATATACGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGT-TATATA-GGCATTGGA
*
83408177 GATAGGAAT
1 GACAGGAAT
83408186 AATTCATGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 1 0.02
46 32 0.65
48 16 0.33
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (47 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGTTATATAGGCATTGGA
Found at i:83413697 original size:42 final size:41
Alignment explanation
Indices: 83413611--83413705 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 41
83413601 ACACATAAAA
* * *
83413611 TCATATCAATGCCATATCCCATATATGGTCTTACATGGGATC
1 TCATATCGATGCCATAGCCCATATATGGTCTTACA-GCGATC
83413653 TCATATCGATGCCAATAGCCCA-ACTATGGTCTTACA-CGATTC
1 TCATATCGATGCC-ATAGCCCATA-TATGGTCTTACAGCGA-TC
83413695 TCATATCGATG
1 TCATATCGATG
83413706 TCCTGTCTCG
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
41 2 0.04
42 26 0.55
43 19 0.40
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (41 bp):
TCATATCGATGCCATAGCCCATATATGGTCTTACAGCGATC
Found at i:83420621 original size:39 final size:40
Alignment explanation
Indices: 83420520--83420621 Score: 136
Period size: 40 Copynumber: 2.6 Consensus size: 40
83420510 TATTCGAATG
*
83420520 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
*
83420560 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CT
** *
83420600 ATGTCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
83420622 TACTTGGTTG
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
39 17 0.30
40 39 0.70
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACT
Found at i:83422577 original size:21 final size:21
Alignment explanation
Indices: 83422551--83422594 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
83422541 CAACAAGTTA
*
83422551 GTCACAATAATAATGCATCAT
1 GTCACAATAATAATGCACCAT
83422572 GTCACAATAATAATGCACCAT
1 GTCACAATAATAATGCACCAT
83422593 GT
1 GT
83422595 AATTTGTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.27
Consensus pattern (21 bp):
GTCACAATAATAATGCACCAT
Found at i:83426558 original size:15 final size:15
Alignment explanation
Indices: 83426526--83426559 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
83426516 AGCATGTACA
*
83426526 CACAACCAAGTCAGC
1 CACAACCAAGACAGC
*
83426541 CACAACCAAGACATC
1 CACAACCAAGACAGC
83426556 CACA
1 CACA
83426560 CATCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.41, G:0.09, T:0.06
Consensus pattern (15 bp):
CACAACCAAGACAGC
Found at i:83427265 original size:42 final size:41
Alignment explanation
Indices: 83427219--83427372 Score: 143
Period size: 41 Copynumber: 3.7 Consensus size: 41
83427209 AATCATACCA
*
83427219 ATGCCATATCCCATATATGGTCTTACATCGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGGATCTCATATCG
* * * *
83427261 ATGCCAATAGCCGAGCTATGGTCTTACAC-GATTTTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGGA-TCTCATATCG
* * * * *
83427303 ATGCCATGTCCCAGACATGGTCCTAC-CGAAATCCCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACG-GATCTCAT-ATCG
*
83427344 ATGCCATATCTCAGATATGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
83427373 TAAACTCATA
Statistics
Matches: 88, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
40 1 0.01
41 44 0.50
42 25 0.28
43 18 0.20
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGGATCTCATATCG
Found at i:83433675 original size:20 final size:20
Alignment explanation
Indices: 83433650--83433697 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
83433640 TTCACGAATC
*
83433650 ACACGGGTTGAAACTAGGGA
1 ACACGGGCTGAAACTAGGGA
* *
83433670 ACACGGGCTGAAATTGGGGA
1 ACACGGGCTGAAACTAGGGA
83433690 ACACGGGC
1 ACACGGGC
83433698 ATGTGCCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.31, C:0.19, G:0.38, T:0.12
Consensus pattern (20 bp):
ACACGGGCTGAAACTAGGGA
Found at i:83438389 original size:28 final size:28
Alignment explanation
Indices: 83438358--83438425 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
83438348 TTGATATTTT
*
83438358 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGACATTCTCAATATCTC
*
83438386 GCACACTAAGTGACATTCTCAATATTTC
1 GCACACTAAGTGACATTCTCAATATCTC
* *
83438414 GTACACTGAGTG
1 GCACACTAAGTG
83438426 CCATATTTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGACATTCTCAATATCTC
Found at i:83447354 original size:13 final size:13
Alignment explanation
Indices: 83447336--83447360 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83447326 GAAATATTAA
83447336 TTATAATAATTTG
1 TTATAATAATTTG
83447349 TTATAATAATTT
1 TTATAATAATTT
83447361 TAGTAAACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
TTATAATAATTTG
Found at i:83450170 original size:26 final size:27
Alignment explanation
Indices: 83450124--83450189 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 27
83450114 AAAATAATGA
* *
83450124 ATTTTA-CCCTAAGTATGAAAATTACC
1 ATTTTACCCCTAGGTATGAAAATGACC
*
83450150 ATTTTACCCCTAGGTGT-AAAATGACC
1 ATTTTACCCCTAGGTATGAAAATGACC
* * *
83450176 GTTATACCCTTAGG
1 ATTTTACCCCTAGG
83450190 GTTAATTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 25 0.76
27 8 0.24
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (27 bp):
ATTTTACCCCTAGGTATGAAAATGACC
Found at i:83450522 original size:20 final size:20
Alignment explanation
Indices: 83450492--83450536 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
83450482 CTGTTTTGTT
83450492 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* *
83450511 ATGGGCCCAACTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
83450531 ATGGGC
1 ATGGGC
83450537 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:83451718 original size:20 final size:20
Alignment explanation
Indices: 83451693--83451730 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
83451683 ACATTTGACA
83451693 ATAAAAA-TTAAAATAAAAGT
1 ATAAAAATTTAAAA-AAAAGT
83451713 ATAAAAATTTAAAAAAAA
1 ATAAAAATTTAAAAAAAA
83451731 ACAAATGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (20 bp):
ATAAAAATTTAAAAAAAAGT
Found at i:83451724 original size:21 final size:20
Alignment explanation
Indices: 83451693--83451731 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
83451683 ACATTTGACA
*
83451693 ATAAAAATTAAAATAAAAGT
1 ATAAAAATTAAAAAAAAAGT
83451713 ATAAAAATTTAAAAAAAAA
1 ATAAAAA-TTAAAAAAAAA
83451732 CAAATGTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (20 bp):
ATAAAAATTAAAAAAAAAGT
Found at i:83454519 original size:13 final size:13
Alignment explanation
Indices: 83454501--83454525 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83454491 ACAACTGCTA
83454501 AAACATATTTGTT
1 AAACATATTTGTT
83454514 AAACATATTTGT
1 AAACATATTTGT
83454526 ATTTGGCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (13 bp):
AAACATATTTGTT
Found at i:83464148 original size:27 final size:27
Alignment explanation
Indices: 83464116--83464392 Score: 310
Period size: 27 Copynumber: 10.3 Consensus size: 27
83464106 GTAGGGCAAA
* **
83464116 TCAGTCATTTTACCTTACAGGGGTATT
1 TCAGTCATTTTACCCTATGGGGGTATT
* * * *
83464143 ACAGTCATTTTACCTTATAGAGGTATT
1 TCAGTCATTTTACCCTATGGGGGTATT
*
83464170 TTAGTCATTTTATCCC-ATGGGGGTATT
1 TCAGTCATTTTA-CCCTATGGGGGTATT
* * *
83464197 TCAATCATTTTATCCTATGAGGGTATT
1 TCAGTCATTTTACCCTATGGGGGTATT
*
83464224 TCAGTCATTTTACCCTATGAGGGTATT
1 TCAGTCATTTTACCCTATGGGGGTATT
* *
83464251 TCGGTTATTTTACCCTATGGGGGTATT
1 TCAGTCATTTTACCCTATGGGGGTATT
*
83464278 TCGGTCATTTTACCCTATGGGGGTATT
1 TCAGTCATTTTACCCTATGGGGGTATT
** * * *
83464305 TTGGTCATTTTATCATATAGGGGTATT
1 TCAGTCATTTTACCCTATGGGGGTATT
* *
83464332 TAAGTCA-TTTACCCTATGAGGGTATT
1 TCAGTCATTTTACCCTATGGGGGTATT
83464358 TC-GATCATTTTA-CCTATGGGGGTATT
1 TCAG-TCATTTTACCCTATGGGGGTATT
83464384 TCAGTCATT
1 TCAGTCATT
83464393 ATTTCGACCC
Statistics
Matches: 215, Mismatches: 30, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
25 1 0.00
26 41 0.19
27 171 0.80
28 2 0.01
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.43
Consensus pattern (27 bp):
TCAGTCATTTTACCCTATGGGGGTATT
Found at i:83468392 original size:14 final size:14
Alignment explanation
Indices: 83468373--83468400 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83468363 TATGTGTTGA
83468373 ATTTTTTCAAAGTC
1 ATTTTTTCAAAGTC
83468387 ATTTTTTCAAAGTC
1 ATTTTTTCAAAGTC
83468401 TAGTCGCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (14 bp):
ATTTTTTCAAAGTC
Found at i:83468850 original size:47 final size:47
Alignment explanation
Indices: 83468655--83468863 Score: 151
Period size: 46 Copynumber: 4.5 Consensus size: 47
83468645 CACATTATAA
* * *
83468655 GAGCCAGTGTAAGACCATGTCTTGGAAATGGCATTGGCATCGAGAT-T
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC-TCGAGATAT
* * * * * **
83468702 AGTGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTTGAGACGT
1 -GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CTCGAGATAT
* * * * *
83468749 AATCCAGTGTAAGA-CATGTCTAGGACAT-ACATTGGCTACGAAATGAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCT-CGAGAT-AT
* * * *
83468796 -AGTCAGTGTAAGACCATGTCTAGGATATGGCATCGACTTGAGATAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATAT
*
83468842 GAGCCAGTGTAAAACCATGTCT
1 GAGCCAGTGTAAGACCATGTCT
83468864 GGGATATGCC
Statistics
Matches: 124, Mismatches: 30, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
45 2 0.02
46 54 0.44
47 50 0.40
48 18 0.15
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATAT
Found at i:83469876 original size:41 final size:41
Alignment explanation
Indices: 83469818--83469898 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 41
83469808 AAGTTTTTGC
* *
83469818 ACACGGGCTAGGACAC-GG-GTGTGTCATGGCCGTGTGAAAG
1 ACACGGGCCAGGACACGGGCGTGTGCCA-GGCCGTGTGAAAG
83469858 ACACGGGCCAGGGACACGGGCGTGTGCCAGGCCGTGTGAAA
1 ACACGGGCCA-GGACACGGGCGTGTGCCAGGCCGTGTGAAA
83469899 ACCCCTGTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
40 9 0.25
41 6 0.17
42 14 0.39
43 7 0.19
ACGTcount: A:0.22, C:0.23, G:0.41, T:0.14
Consensus pattern (41 bp):
ACACGGGCCAGGACACGGGCGTGTGCCAGGCCGTGTGAAAG
Found at i:83472956 original size:28 final size:28
Alignment explanation
Indices: 83472892--83472963 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
83472882 ATCTTCGATG
*
83472892 TCTCGCACACTAAGTTTCATACTCAATA
1 TCTCGCACACTAAGTGTCATACTCAATA
* *
83472920 TCT-GACACACCAAGTGTCATTCTCAATA
1 TCTCG-CACACTAAGTGTCATACTCAATA
*
83472948 TTTCGCACACTAAGTG
1 TCTCGCACACTAAGTG
83472964 CCACATATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.03
28 35 0.95
29 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (28 bp):
TCTCGCACACTAAGTGTCATACTCAATA
Found at i:83473061 original size:40 final size:40
Alignment explanation
Indices: 83472977--83473052 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
83472967 CATATATATA
*
83472977 TAGTCGAAGCTATCTCAAATCGCACACCAAATGCCACATT
1 TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCACATT
* * *
83473017 TAGTCGAAGCTATTTCAAACCGCACACTAAGTGCCA
1 TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCA
83473053 TTCTTAGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.22
Consensus pattern (40 bp):
TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCACATT
Found at i:83476059 original size:9 final size:9
Alignment explanation
Indices: 83476045--83476069 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
83476035 GACTAAAATG
83476045 TGAAATAAA
1 TGAAATAAA
83476054 TGAAATAAA
1 TGAAATAAA
83476063 TGAAATA
1 TGAAATA
83476070 TATGGACTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (9 bp):
TGAAATAAA
Found at i:83477388 original size:50 final size:50
Alignment explanation
Indices: 83477319--83477422 Score: 208
Period size: 50 Copynumber: 2.1 Consensus size: 50
83477309 ACTTTATAAG
83477319 TTGAATTCTAACTTATGGCATGTATAGACTAGCCTTTGTGTTAGTTTATT
1 TTGAATTCTAACTTATGGCATGTATAGACTAGCCTTTGTGTTAGTTTATT
83477369 TTGAATTCTAACTTATGGCATGTATAGACTAGCCTTTGTGTTAGTTTATT
1 TTGAATTCTAACTTATGGCATGTATAGACTAGCCTTTGTGTTAGTTTATT
83477419 TTGA
1 TTGA
83477423 TTGAGTATGT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46
Consensus pattern (50 bp):
TTGAATTCTAACTTATGGCATGTATAGACTAGCCTTTGTGTTAGTTTATT
Found at i:83487001 original size:28 final size:28
Alignment explanation
Indices: 83486970--83487037 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
83486960 TTGATATTTT
*
83486970 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGACATTCTCAATATCTC
*
83486998 GCACACTAAGTGACATTCTCAATATTTC
1 GCACACTAAGTGACATTCTCAATATCTC
* *
83487026 GTACACTGAGTG
1 GCACACTAAGTG
83487038 CCATATTTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGACATTCTCAATATCTC
Found at i:83495438 original size:13 final size:13
Alignment explanation
Indices: 83495420--83495444 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83495410 GAAATATTAA
83495420 TTATAATAATTTG
1 TTATAATAATTTG
83495433 TTATAATAATTT
1 TTATAATAATTT
83495445 TAGTAAACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
TTATAATAATTTG
Found at i:83502206 original size:47 final size:47
Alignment explanation
Indices: 83502011--83502219 Score: 151
Period size: 46 Copynumber: 4.5 Consensus size: 47
83502001 CACATTATAA
* * *
83502011 GAGCCAGTGTAAGACCATGTCTTGGAAATGGCATTGGCATCGAGAT-T
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC-TCGAGATAT
* * * * * **
83502058 AGTGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTTGAGACGT
1 -GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CTCGAGATAT
* * * * *
83502105 AATCCAGTGTAAGA-CATGTCTAGGACAT-ACATTGGCTACGAAATGAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCT-CGAGAT-AT
* * * *
83502152 -AGTCAGTGTAAGACCATGTCTAGGATATGGCATCGACTTGAGATAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATAT
*
83502198 GAGCCAGTGTAAAACCATGTCT
1 GAGCCAGTGTAAGACCATGTCT
83502220 GGGATATGCC
Statistics
Matches: 124, Mismatches: 30, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
45 2 0.02
46 54 0.44
47 50 0.40
48 18 0.15
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATAT
Found at i:83503234 original size:41 final size:40
Alignment explanation
Indices: 83503176--83503256 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 40
83503166 AAGTTTTTGC
* * *
83503176 ACACGGGCTAGGACACGG-GTGTGTCATGGCCGTGTGAAAG
1 ACACGGGCCAGGACACGGAGTGTGCCA-GCCCGTGTGAAAG
83503216 ACACGGGCCAGGGACACGGACGTGTGCCAGCCCGTGTGAAA
1 ACACGGGCCA-GGACACGGA-GTGTGCCAGCCCGTGTGAAA
83503257 ACCCCTGTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 9 0.26
41 8 0.23
42 11 0.31
43 7 0.20
ACGTcount: A:0.23, C:0.25, G:0.38, T:0.14
Consensus pattern (40 bp):
ACACGGGCCAGGACACGGAGTGTGCCAGCCCGTGTGAAAG
Found at i:83506313 original size:28 final size:28
Alignment explanation
Indices: 83506249--83506320 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
83506239 ATCTTCGATG
*
83506249 TCTCGCACACTAAGTTTCATACTCAATA
1 TCTCGCACACTAAGTGTCATACTCAATA
* *
83506277 TCT-GACACACCAAGTGTCATTCTCAATA
1 TCTCG-CACACTAAGTGTCATACTCAATA
*
83506305 TTTCGCACACTAAGTG
1 TCTCGCACACTAAGTG
83506321 CCACATATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.03
28 35 0.95
29 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (28 bp):
TCTCGCACACTAAGTGTCATACTCAATA
Found at i:83506418 original size:40 final size:40
Alignment explanation
Indices: 83506334--83506409 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
83506324 CATATATATA
*
83506334 TAGTCGAAGCTATCTCAAATCGCACACCAAATGCCACATT
1 TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCACATT
* * *
83506374 TAGTCGAAGCTATTTCAAACCGCACACTAAGTGCCA
1 TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCA
83506410 TTCTTAGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.22
Consensus pattern (40 bp):
TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCACATT
Found at i:83510735 original size:50 final size:50
Alignment explanation
Indices: 83510666--83510769 Score: 208
Period size: 50 Copynumber: 2.1 Consensus size: 50
83510656 ACTTTATAAG
83510666 TTGAATTCTAACTTATGGCATGTATAGACTAGCCTTTGTGTTAGTTTATT
1 TTGAATTCTAACTTATGGCATGTATAGACTAGCCTTTGTGTTAGTTTATT
83510716 TTGAATTCTAACTTATGGCATGTATAGACTAGCCTTTGTGTTAGTTTATT
1 TTGAATTCTAACTTATGGCATGTATAGACTAGCCTTTGTGTTAGTTTATT
83510766 TTGA
1 TTGA
83510770 TTGAGTATGT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46
Consensus pattern (50 bp):
TTGAATTCTAACTTATGGCATGTATAGACTAGCCTTTGTGTTAGTTTATT
Found at i:83517553 original size:44 final size:44
Alignment explanation
Indices: 83517482--83517601 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 44
83517472 GTTGACATTG
* ** *
83517482 ATCTGAGATATCGTGTAAGACTGTGTCTGGGACACAAGCCTCG-
1 ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAAGCATCGT
* *
83517525 AGT-TGAGATTTACGTGTAAGACCATGTCTGGGACATAGGCATCGT
1 A-TCTGAGATTT-CGTGTAAGACCATGTCTGGGACACAAGCATCGT
*
83517570 ATCT-A-ATTTCGTGTAAGACCCTGTCTGGGACA
1 ATCTGAGATTTCGTGTAAGACCATGTCTGGGACA
83517602 GAGGCTTCGA
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
42 22 0.33
43 12 0.18
44 30 0.45
45 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (44 bp):
ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAAGCATCGT
Found at i:83524955 original size:44 final size:44
Alignment explanation
Indices: 83524890--83525009 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 44
83524880 GTTGACATTG
* * *
83524890 ATCTGAGATATCGTGTAAGACCGTGTCTGGGACACAAGCCTCG-
1 ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAAGCATCGT
* * *
83524933 AGT-TGAGATTTACGTGTAAGACCATGTATGGGACATAGGCATCGT
1 A-TCTGAGATTT-CGTGTAAGACCATGTCTGGGACACAAGCATCGT
*
83524978 ATCT-A-ATTTCGTGTAAGACCCTGTCTGGGACA
1 ATCTGAGATTTCGTGTAAGACCATGTCTGGGACA
83525010 GAGGCTTCGA
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
42 21 0.32
43 12 0.18
44 30 0.46
45 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (44 bp):
ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAAGCATCGT
Found at i:83525007 original size:42 final size:42
Alignment explanation
Indices: 83524889--83525041 Score: 139
Period size: 42 Copynumber: 3.5 Consensus size: 42
83524879 TGTTGACATT
* * * *
83524889 GATCTGAGATATCGTGTAAGACCGTGTCTGGGACACAAGCCTC
1 GATCTGA-ATTTCGTGTAAGACCATGTCTGGGACACAGGCATC
* *
83524932 GAGT-TGAGATTTACGTGTAAGACCATGTATGGGACATAGGCATC
1 GA-TCTGA-ATTT-CGTGTAAGACCATGTCTGGGACACAGGCATC
* * *
83524976 GTATCT-AATTTCGTGTAAGACCCTGTCTGGGACAGAGGCTTC
1 G-ATCTGAATTTCGTGTAAGACCATGTCTGGGACACAGGCATC
* *
83525018 GATACTGAATTACATGTAAGACCA
1 GAT-CTGAATTTCGTGTAAGACCA
83525042 CATCCGAGAC
Statistics
Matches: 91, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
41 2 0.02
42 30 0.33
43 27 0.30
44 30 0.33
45 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (42 bp):
GATCTGAATTTCGTGTAAGACCATGTCTGGGACACAGGCATC
Found at i:83525974 original size:13 final size:13
Alignment explanation
Indices: 83525956--83525980 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83525946 AGCTAAGTAT
83525956 CACATGGCCATGG
1 CACATGGCCATGG
83525969 CACATGGCCATG
1 CACATGGCCATG
83525981 TCTATTGGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.32, G:0.28, T:0.16
Consensus pattern (13 bp):
CACATGGCCATGG
Found at i:83527406 original size:15 final size:15
Alignment explanation
Indices: 83527386--83527416 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
83527376 AAATATGAAA
83527386 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
83527401 GATATGTTTTGTATT
1 GATATGTTTTGGATT
83527416 G
1 G
83527417 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:83531076 original size:47 final size:45
Alignment explanation
Indices: 83530910--83531173 Score: 191
Period size: 47 Copynumber: 5.7 Consensus size: 45
83530900 TTATGTGAAA
* * *
83530910 GCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGAG-TGAGT
* * * *
83530958 GCTAGTGTAAGACGTGTTTGGGACATGCATCAGCCGCAT-CA-TGA-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G--GCATAGAGTGAGT
*
83531003 AGCTC-GTGTAAGACCACGTCTGGGACATGGCATCGGCATAGAGGTGAGT
1 -GC-CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGA-GTGAGT
* * * *
83531052 GCCAGTGTAAGACATGTCTAGGACATGGATCGGCCTTGA-TGATGTT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAGAGTGA-G-T
* * **
83531098 AGCCAGTGTAAGACGTGTCTGGGACATGCATTGGC-TA-AGTTTCGT
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAGAG-TGAGT
*
83531143 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
83531174 AGCACGTATA
Statistics
Matches: 173, Mismatches: 26, Indels: 38
0.73 0.11 0.16
Matches are distributed among these distances:
44 31 0.18
45 7 0.04
46 32 0.18
47 69 0.40
48 29 0.17
49 5 0.03
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAGAGTGAGT
Found at i:83531078 original size:94 final size:93
Alignment explanation
Indices: 83530917--83531220 Score: 312
Period size: 94 Copynumber: 3.2 Consensus size: 93
83530907 AAAGCCAGTA
* * * *
83530917 TAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGGGCTAGTGTAAGACGTGTTTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
83530982 ATGCATCAGCCGCATCATGATAGCTCGTG
66 ATGCATCAGCCG-ATCATGATAGCTCGTG
* * * *
83531011 TAAGACCACGTCTGGGACATGGCATCGGCATAGAGGTGAGTGCCAGTGTAAGACATGTCTAGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
* * * *
83531076 ATGGATCGGCCTTGATGATGTTAGC-CAGTG
66 ATGCATCAGCC--GATCATGATAGCTC-GTG
* * * **
83531106 TAAGA-CGTGTCTGGGACAT-GCATTGGC-TA-AGTTTCGTGCTAGTGTAAGACATGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
* * * *
83531167 ATGCATCAGCACGTATACACGAGAACTAGTG
66 ATGCATCAGC-CG-AT-CATGATAGCTCGTG
*
83531198 TAAGACCATGTCTAGGACATGGC
1 TAAGACCATGTCTGGGACATGGC
83531221 TGCGGCAACT
Statistics
Matches: 171, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
90 1 0.01
91 37 0.22
92 15 0.09
93 19 0.11
94 81 0.47
95 17 0.10
96 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (93 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
ATGCATCAGCCGATCATGATAGCTCGTG
Found at i:83533642 original size:29 final size:29
Alignment explanation
Indices: 83533600--83533683 Score: 118
Period size: 29 Copynumber: 3.0 Consensus size: 29
83533590 ACATGACTAT
83533600 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
83533629 GAATGTGATTTGGGCCTAATGGACCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
83533658 GAATGAGA--TGGGCCTAGTGGGCCATA
1 GAATGTGATTTGGGCCTAATGGGCCATA
83533684 TGCATGGATG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
27 16 0.32
29 34 0.68
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:83533682 original size:27 final size:26
Alignment explanation
Indices: 83533610--83533693 Score: 96
Period size: 29 Copynumber: 3.1 Consensus size: 26
83533600 GAATGTGATT
*
83533610 TGGGCCTAATGGGCCATACGAATGTGA
1 TGGGCCTAATGGGCCATATGAATG-GA
*
83533637 TTTGGGCCTAATGGACCATATGAATGAGA
1 --TGGGCCTAATGGGCCATATGAATG-GA
* *
83533666 TGGGCCTAGTGGGCCATATGCATGGA
1 TGGGCCTAATGGGCCATATGAATGGA
83533692 TG
1 TG
83533694 TAGACTTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 4 0.08
27 21 0.43
29 24 0.49
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (26 bp):
TGGGCCTAATGGGCCATATGAATGGA
Found at i:83535472 original size:40 final size:40
Alignment explanation
Indices: 83535414--83535671 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
83535404 CAGATGATAA
* * *
83535414 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
83535454 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
83535494 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
83535534 CCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
83535574 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
83535614 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
83535654 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
83535672 TACTTGGCTT
Statistics
Matches: 200, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 16 0.08
40 184 0.92
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83538140 original size:17 final size:18
Alignment explanation
Indices: 83538107--83538140 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83538097 TCTAAGGAAG
83538107 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
83538125 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
83538141 CTTTGATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:83539792 original size:13 final size:13
Alignment explanation
Indices: 83539774--83539800 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
83539764 GCTCGACAGG
83539774 GACACGCCCATGT
1 GACACGCCCATGT
83539787 GACACGCCCATGT
1 GACACGCCCATGT
83539800 G
1 G
83539801 CGATTGCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:83544637 original size:28 final size:29
Alignment explanation
Indices: 83544578--83544675 Score: 112
Period size: 29 Copynumber: 3.4 Consensus size: 29
83544568 CCCTCTATTC
83544578 CACACTTAGTGCT-TAGGTAATCAAACTCG
1 CACACTTAGTGCTATA-GTAATCAAACTCG
*
83544607 CACACTTAGTGCTATA-TAATCAAACTTG
1 CACACTTAGTGCTATAGTAATCAAACTCG
* * * *
83544635 CACACTTAGTGCTAT-GCAATTTAAACCCC
1 CACACTTAGTGCTATAGTAA-TCAAACTCG
83544664 CACACTTAGTGC
1 CACACTTAGTGC
83544676 CAATCTCATG
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
28 28 0.47
29 30 0.50
30 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.29
Consensus pattern (29 bp):
CACACTTAGTGCTATAGTAATCAAACTCG
Found at i:83552630 original size:28 final size:28
Alignment explanation
Indices: 83552598--83552725 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
83552588 ATAGTAAGTC
*
83552598 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
83552626 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
83552655 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
83552683 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
83552712 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83552726 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:83552688 original size:57 final size:57
Alignment explanation
Indices: 83552597--83552725 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
83552587 TATAGTAAGT
*
83552597 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
83552654 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
83552711 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
83552726 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:83554235 original size:79 final size:82
Alignment explanation
Indices: 83554124--83554308 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
83554114 GCTACTCGTT
* *
83554124 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
83554187 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
83554204 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
83554267 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
83554284 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83554309 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:83554308 original size:40 final size:40
Alignment explanation
Indices: 83554105--83554308 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
83554095 CGGAATTTAA
** *
83554105 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83554145 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
83554185 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83554224 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
83554264 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
83554304 CCGGA
1 CCGGA
83554309 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:83555502 original size:56 final size:56
Alignment explanation
Indices: 83555435--83555554 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
83555425 TATTAGTTTA
83555435 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
83555491 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
83555547 TTGCCCAT
1 TTGCCCAT
83555555 CATCCCTTTC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:83560157 original size:40 final size:40
Alignment explanation
Indices: 83560127--83560310 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
83560117 GCTACTCGTT
*
83560127 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
83560167 CAATTGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
83560207 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
83560246 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
83560287 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
83560311 ACATCATTCA
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 74 0.62
41 14 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:83560238 original size:79 final size:82
Alignment explanation
Indices: 83560127--83560311 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
83560117 GCTACTCGTT
* * *
83560127 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
83560190 GGATTTAGTAACTCA-CA
65 GGATATAGTAACTCAGCA
* **
83560207 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* * *
83560270 GATATGGTCACTTAGCA
66 GATATAGTAACTCAGCA
83560287 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83560312 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.62
80 32 0.35
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTCAGCA
Found at i:83565415 original size:13 final size:13
Alignment explanation
Indices: 83565397--83565421 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83565387 GAAATATTAA
83565397 TTATAATAATTTG
1 TTATAATAATTTG
83565410 TTATAATAATTT
1 TTATAATAATTT
83565422 TAGTAAACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
TTATAATAATTTG
Found at i:83568231 original size:26 final size:27
Alignment explanation
Indices: 83568185--83568250 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 27
83568175 AAAATAATGA
* *
83568185 ATTTTA-CCCTAAGTATGAAAATTACC
1 ATTTTACCCCTAGGTATGAAAATGACC
*
83568211 ATTTTACCCCTAGGTGT-AAAATGACC
1 ATTTTACCCCTAGGTATGAAAATGACC
* * *
83568237 GTTATACCCTTAGG
1 ATTTTACCCCTAGG
83568251 GTTAATTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 25 0.76
27 8 0.24
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (27 bp):
ATTTTACCCCTAGGTATGAAAATGACC
Found at i:83568582 original size:20 final size:20
Alignment explanation
Indices: 83568552--83568596 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
83568542 CTGTTTTGTT
83568552 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* *
83568571 ATGGGCCCAACTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
83568591 ATGGGC
1 ATGGGC
83568597 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:83572577 original size:13 final size:13
Alignment explanation
Indices: 83572559--83572583 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83572549 ACAACTGCTA
83572559 AAACATATTTGTT
1 AAACATATTTGTT
83572572 AAACATATTTGT
1 AAACATATTTGT
83572584 ATTTGGCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (13 bp):
AAACATATTTGTT
Found at i:83581782 original size:47 final size:47
Alignment explanation
Indices: 83581587--83581795 Score: 151
Period size: 46 Copynumber: 4.5 Consensus size: 47
83581577 CACATTATAA
* * *
83581587 GAGCCAGTGTAAGACCATGTCTTGGAAATGGCATTGGCATCGAGAT-T
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC-TCGAGATAT
* * * * * **
83581634 AGTGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTTGAGACGT
1 -GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CTCGAGATAT
* * * * *
83581681 AATCCAGTGTAAGA-CATGTCTAGGACAT-ACATTGGCTACGAAATGAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCT-CGAGAT-AT
* * * *
83581728 -AGTCAGTGTAAGACCATGTCTAGGATATGGCATCGACTTGAGATAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATAT
*
83581774 GAGCCAGTGTAAAACCATGTCT
1 GAGCCAGTGTAAGACCATGTCT
83581796 GGGATATGCC
Statistics
Matches: 124, Mismatches: 30, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
45 2 0.02
46 54 0.44
47 50 0.40
48 18 0.15
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTCGAGATAT
Found at i:83582810 original size:41 final size:40
Alignment explanation
Indices: 83582752--83582832 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 40
83582742 AAGTTTTTGC
* * *
83582752 ACACGGGCTAGGACACGG-GTGTGTCATGGCCGTGTGAAAG
1 ACACGGGCCAGGACACGGAGTGTGCCA-GCCCGTGTGAAAG
83582792 ACACGGGCCAGGGACACGGACGTGTGCCAGCCCGTGTGAAA
1 ACACGGGCCA-GGACACGGA-GTGTGCCAGCCCGTGTGAAA
83582833 ACCCCTGTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 9 0.26
41 8 0.23
42 11 0.31
43 7 0.20
ACGTcount: A:0.23, C:0.25, G:0.38, T:0.14
Consensus pattern (40 bp):
ACACGGGCCAGGACACGGAGTGTGCCAGCCCGTGTGAAAG
Found at i:83585888 original size:28 final size:28
Alignment explanation
Indices: 83585824--83585895 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
83585814 ATCTTCGATG
*
83585824 TCTCGCACACTAAGTTTCATACTCAATA
1 TCTCGCACACTAAGTGTCATACTCAATA
* *
83585852 TCT-GACACACCAAGTGTCATTCTCAATA
1 TCTCG-CACACTAAGTGTCATACTCAATA
*
83585880 TTTCGCACACTAAGTG
1 TCTCGCACACTAAGTG
83585896 CCACATATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.03
28 35 0.95
29 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (28 bp):
TCTCGCACACTAAGTGTCATACTCAATA
Found at i:83585995 original size:40 final size:40
Alignment explanation
Indices: 83585911--83585986 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
83585901 TATATATATA
*
83585911 TAGTCGAAGCTATCTCAAATCGCACACCAAATGCCACATT
1 TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCACATT
* * *
83585951 TAGTCGAAGCTATTTCAAACCGCACACTAAGTGCCA
1 TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCA
83585987 TTCTTAGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.22
Consensus pattern (40 bp):
TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCACATT
Found at i:83591773 original size:63 final size:63
Alignment explanation
Indices: 83591693--83591875 Score: 167
Period size: 65 Copynumber: 2.8 Consensus size: 63
83591683 AGACATTATG
* *
83591693 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAG-TACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTG-TACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
83591756 ATGTAGCTAGGTTGCATGTGTGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
83591821 A
63 A
* * *
83591822 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTAACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGT-GTACT-ATGTGTACACCATGTAG--ACAAGAGAGC
83591876 CGAACTATAT
Statistics
Matches: 95, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
62 4 0.04
63 29 0.31
64 13 0.14
65 35 0.37
66 13 0.14
67 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.25
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:83594902 original size:29 final size:30
Alignment explanation
Indices: 83594855--83594913 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
83594845 ATTTAATACG
83594855 AACTTTGGCAAAATCACATTTTT-CCCCTA
1 AACTTTGGCAAAATCACATTTTTGCCCCTA
* * *
83594884 AACTTTTGCATAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATCACATTTTTGCCCCTA
83594914 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATCACATTTTTGCCCCTA
Found at i:83603264 original size:47 final size:47
Alignment explanation
Indices: 83603118--83603558 Score: 704
Period size: 47 Copynumber: 9.6 Consensus size: 47
83603108 CCCTTCGGGA
* * * * * *
83603118 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83603164 C-TGTCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83603209 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83603255 CTTATCACATATATACACTTTCACATTCATCACAT--GCCA-TAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83603299 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83603346 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83603393 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83603440 CTTATCACATATATATACACTTTCACATTCAT--CAT-GGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83603486 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83603533 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
83603559 CACAATTATC
Statistics
Matches: 372, Mismatches: 12, Indels: 21
0.92 0.03 0.05
Matches are distributed among these distances:
44 82 0.22
45 36 0.10
46 55 0.15
47 177 0.48
49 22 0.06
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83603323 original size:91 final size:93
Alignment explanation
Indices: 83603118--83603558 Score: 700
Period size: 91 Copynumber: 4.8 Consensus size: 93
83603108 CCCTTCGGGA
* * * * * * *
83603118 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACT-CGCC-TGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
83603181 -TTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACAT-GGCCATTAGGC
83603209 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
83603273 TTTCACATTCATCACAT-GCCA-TAGGC
66 TTTCACATTCATCACATGGCCATTAGGC
83603299 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
83603364 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACAT-GGCCATTAGGC
83603393 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
83603458 ACTTTCACATTCAT--CATGGCCATTCGGC
64 ACTTTCACATTCATCACATGGCCATTAGGC
*
83603486 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
83603551 ATTCACAT
66 TTTCACAT
83603559 CACAATTATC
Statistics
Matches: 331, Mismatches: 10, Indels: 18
0.92 0.03 0.05
Matches are distributed among these distances:
90 42 0.13
91 104 0.31
92 15 0.05
93 85 0.26
94 63 0.19
96 22 0.07
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATGGCCATTAGGC
Found at i:83603518 original size:187 final size:182
Alignment explanation
Indices: 83603118--83603558 Score: 708
Period size: 187 Copynumber: 2.4 Consensus size: 182
83603108 CCCTTCGGGA
* * * * * * *
83603118 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACT-CGCC-TGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
83603181 TTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCATCACATCGG
66 TTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCATCACATCGG
83603246 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATGCCATAGGC
131 CCATTAGGCCTTATCACATATATACACTTTCACATTCAT-ACATGCCATAGGC
83603299 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
83603364 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 -TTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATACACTTTCACATTCATCACATC
*
83603429 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT-CATGGCCATTCGGC
129 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATACAT-GCCA-TAGGC
*
83603486 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
83603551 ATTCACAT
66 -TTCACAT
83603559 CACAATTATC
Statistics
Matches: 242, Mismatches: 10, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
181 38 0.16
182 3 0.01
183 15 0.06
184 29 0.12
185 56 0.23
186 4 0.02
187 97 0.40
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (182 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACATATATACACTTTCACATTCATACATGCCATAGGC
Done.