Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 262 of 325
Found at i:83606930 original size:40 final size:40
Alignment explanation
Indices: 83606886--83607232 Score: 538
Period size: 40 Copynumber: 8.7 Consensus size: 40
83606876 CCAGCATGAT
* * * *
83606886 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
83606926 TGCTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
83606966 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83607006 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83607046 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83607086 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83607125 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83607165 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83607205 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
83607233 GTCGAGACCT
Statistics
Matches: 283, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 43 0.15
40 238 0.84
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:83607176 original size:159 final size:160
Alignment explanation
Indices: 83606886--83607228 Score: 544
Period size: 159 Copynumber: 2.1 Consensus size: 160
83606876 CCAGCATGAT
* * **
83606886 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGAGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAGACTTAGCACGGATA
* * *
83606951 TATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
*
83607016 GACTTAGTCCGGATACATCACTAGCACGAA
131 GACTTAGCCCGGATACATCACTAGCACGAA
* * * *
83607046 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAATGCTCTTCG-GACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAGACTTAGCACGGATA
* *
83607110 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAATGCTCTTCGG
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
*
83607175 GACTTAGCCCGGATACATCACTAGCATGAA
131 GACTTAGCCCGGATACATCACTAGCACGAA
83607205 TGCTCTTCGGGACTTAGCCCGGAT
1 TGCTCTTCGGGACTTAGCCCGGAT
83607229 CATCGTCGAG
Statistics
Matches: 167, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
159 123 0.74
160 44 0.26
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (160 bp):
TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAGACTTAGCACGGATA
CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
GACTTAGCCCGGATACATCACTAGCACGAA
Found at i:83609532 original size:25 final size:25
Alignment explanation
Indices: 83609504--83609559 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
83609494 CTCGGCCCTG
83609504 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
83609529 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
83609554 TCACAT
1 TCACAT
83609560 CGGCTATTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:83609580 original size:72 final size:72
Alignment explanation
Indices: 83609456--83609606 Score: 221
Period size: 72 Copynumber: 2.1 Consensus size: 72
83609446 TTCGGGACTT
* * * * *
83609456 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTT
1 ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTT
83609521 CACATTC
66 CACATTC
* * * *
83609528 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTT
83609593 CACATTC
66 CACATTC
83609600 ATCACAT
1 ATCACAT
83609607 CGGCCATTAG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (72 bp):
ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTT
CACATTC
Found at i:83609581 original size:47 final size:47
Alignment explanation
Indices: 83609528--83610116 Score: 1101
Period size: 47 Copynumber: 12.5 Consensus size: 47
83609518 TTTCACATTC
*
83609528 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609575 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609622 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609671 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609718 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609765 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609812 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609859 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609906 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609953 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
83610002 ATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83610049 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
83610096 ATCATATATATACA--TTCACAT
1 ATCACATATATACACTTTCACAT
83610117 CACAATTATC
Statistics
Matches: 534, Mismatches: 4, Indels: 10
0.97 0.01 0.02
Matches are distributed among these distances:
45 7 0.01
47 433 0.81
49 94 0.18
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:83609823 original size:143 final size:141
Alignment explanation
Indices: 83609528--83610116 Score: 1101
Period size: 143 Copynumber: 4.2 Consensus size: 141
83609518 TTTCACATTC
*
83609528 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
83609593 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
66 CACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCG
83609658 GCCATTAGGCCTT
129 GCCATTAGGCCTT
83609671 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
83609736 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
83609801 CATTAGGCCTT
131 CATTAGGCCTT
83609812 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
83609877 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
83609942 CATTAGGCCTT
131 CATTAGGCCTT
83609953 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
83610018 TTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCG
64 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
83610083 GCCATTAGGCCTT
129 GCCATTAGGCCTT
*
83610096 ATCATATATATACA--TTCACAT
1 ATCACATATATACACTTTCACAT
83610117 CACAATTATC
Statistics
Matches: 441, Mismatches: 3, Indels: 8
0.98 0.01 0.02
Matches are distributed among these distances:
139 7 0.02
141 197 0.45
143 237 0.54
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (141 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTAGGCCTT
Found at i:83609966 original size:190 final size:188
Alignment explanation
Indices: 83609528--83610116 Score: 1101
Period size: 190 Copynumber: 3.1 Consensus size: 188
83609518 TTTCACATTC
*
83609528 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
83609593 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
66 CACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCG
83609658 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
129 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609718 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
83609783 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
83609848 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
131 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
83609906 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACT
83609971 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
64 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
83610036 GCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
129 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
83610096 ATCATATATATACA--TTCACAT
1 ATCACATATATACACTTTCACAT
83610117 CACAATTATC
Statistics
Matches: 394, Mismatches: 3, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
188 148 0.38
190 246 0.62
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (188 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:83622043 original size:7 final size:7
Alignment explanation
Indices: 83622033--83622087 Score: 65
Period size: 7 Copynumber: 7.6 Consensus size: 7
83622023 AAGAATACAA
83622033 AGGGTTT
1 AGGGTTT
83622040 AGGGTTT
1 AGGGTTT
83622047 AAGGGTTTT
1 -AGGG-TTT
* *
83622056 AAGATTT
1 AGGGTTT
*
83622063 AGGGTCT
1 AGGGTTT
83622070 AGGGTTT
1 AGGGTTT
83622077 AGGGTTT
1 AGGGTTT
83622084 AGGG
1 AGGG
83622088 AAATTGAGGA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
7 31 0.77
8 6 0.15
9 3 0.08
ACGTcount: A:0.20, C:0.02, G:0.40, T:0.38
Consensus pattern (7 bp):
AGGGTTT
Found at i:83630777 original size:42 final size:42
Alignment explanation
Indices: 83630669--83630828 Score: 184
Period size: 43 Copynumber: 3.7 Consensus size: 42
83630659 ATATGTGTTA
* * *
83630669 TCGTGTAGGACCACGTCTGGGATGTTGGCATCG-ACTTATTATT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGATT
83630712 TACGTGTAAGACCACGT-TCGGGACGTTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCT-GGGACGTTGGCATCGTATTTGATT
83630755 TCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATT
* *
83630798 ACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCAT
83630829 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 5, Indels: 18
0.82 0.04 0.14
Matches are distributed among these distances:
41 1 0.01
42 27 0.26
43 43 0.42
44 31 0.30
45 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATT
Found at i:83642845 original size:19 final size:19
Alignment explanation
Indices: 83642813--83642858 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
83642803 ACAACATATA
* * *
83642813 ATAATGTCACATTATTTAC
1 ATAATATCAAATTATTCAC
83642832 ATAATATCAAATTATTCAC
1 ATAATATCAAATTATTCAC
83642851 ATATATAT
1 ATA-ATAT
83642859 ACTTACAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.41
Consensus pattern (19 bp):
ATAATATCAAATTATTCAC
Found at i:83644679 original size:27 final size:27
Alignment explanation
Indices: 83644647--83644984 Score: 421
Period size: 27 Copynumber: 12.6 Consensus size: 27
83644637 CTTTAATCGA
*
83644647 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
83644674 TGAAATGACTGTTTTGCCCTTATAAGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* **
83644701 TAAAATGACTGTTTTACCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
83644728 TAAAATGACTGTTTTGCCATTATGA-GG
1 TAAAATGACTGTTTTGCCCTTAT-ATGG
* **
83644755 TAAAATGACTGTTTTGCCTTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
83644782 TAAAATGACTGTTTTGCCCTTATAGGG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
83644809 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* * *
83644836 TAAAATGATTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* ***
83644863 TAAAATGACTTTTTTGCCCTTACGGGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
83644890 TAAAATGACTATTTTGCCCTTATCAT-A
1 TAAAATGACTGTTTTGCCCTTAT-ATGG
83644917 TAAAATGACTGTTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
83644944 TAAAATGATTGTTTTGCCCTT-TATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
83644970 TAAGATGATTGTTTT
1 TAAAATGACTGTTTT
83644985 ACCCCTATGT
Statistics
Matches: 276, Mismatches: 31, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
26 21 0.08
27 255 0.92
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATATGG
Found at i:83648410 original size:27 final size:27
Alignment explanation
Indices: 83648372--83648673 Score: 403
Period size: 27 Copynumber: 11.2 Consensus size: 27
83648362 GACCCTTGAT
83648372 TGTTTTGCCCTTATGAGGTAAAATGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
*
83648399 TGTTTTGCCCTTATGA-GAAAAATGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
* *
83648425 TGTTTTTCCCTTATGTGGTAAAATGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
* *
83648452 TGTTTTTCCCTTATGAGGTAAAGTGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
* * *
83648479 TATTTTGCCCTTATGGGGTAAACTGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
* * *
83648506 TGTTTTGCCGTTATGTGGTAAAATGAT
1 TGTTTTGCCCTTATGAGGTAAAATGAC
*
83648533 TGTTTTGCCCTTATGGGGTAAAATGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
* *
83648560 TGTTTTGCCCTTATGGGGTAAAATGAT
1 TGTTTTGCCCTTATGAGGTAAAATGAC
*
83648587 TGTTTTGCCCTTA-GAGGGTAAAATGAT
1 TGTTTTGCCCTTATGA-GGTAAAATGAC
83648614 TGTTTTGCCCTTA-GAGGGTAAAATGAC
1 TGTTTTGCCCTTATGA-GGTAAAATGAC
* *
83648641 TGTTTTGCCCTTATGCGGTAATATGAC
1 TGTTTTGCCCTTATGAGGTAAAATGAC
*
83648668 TATTTT
1 TGTTTT
83648674 ACCCCTGTGT
Statistics
Matches: 248, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
26 24 0.10
27 223 0.90
28 1 0.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.40
Consensus pattern (27 bp):
TGTTTTGCCCTTATGAGGTAAAATGAC
Found at i:83652689 original size:25 final size:23
Alignment explanation
Indices: 83652661--83652766 Score: 149
Period size: 25 Copynumber: 4.4 Consensus size: 23
83652651 CTAGAGGCCT
*
83652661 AGCCTCTTTTAGTAACTGGGGCAAA
1 AGCC-CTTTTA-TAACTGGGGCATA
83652686 AGCCCTTTTTATAACTGGGGCATA
1 AGCCC-TTTTATAACTGGGGCATA
83652710 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-T-ATAACTGGGGCATA
*
83652735 AGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTTATAACTGGGGCATA
83652758 AGCCCTTTT
1 AGCCCTTTT
83652767 GCACTTCCTC
Statistics
Matches: 75, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
23 25 0.33
24 19 0.25
25 31 0.41
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (23 bp):
AGCCCTTTTATAACTGGGGCATA
Found at i:83652700 original size:24 final size:24
Alignment explanation
Indices: 83652667--83652766 Score: 148
Period size: 24 Copynumber: 4.1 Consensus size: 24
83652657 GCCTAGCCTC
*
83652667 TTTTAGTAACTGGGGCAAAAGCCCT
1 TTTTA-TAACTGGGGCATAAGCCCT
83652692 TTTTATAACTGGGGCATAAGCCCT
1 TTTTATAACTGGGGCATAAGCCCT
*
83652716 TTATCATAACTGGGGCATAAGCCC-
1 TT-TTATAACTGGGGCATAAGCCCT
*
83652740 TTTAATAACTGGGGCATAAGCCCT
1 TTTTATAACTGGGGCATAAGCCCT
83652764 TTT
1 TTT
83652767 GCACTTCCTC
Statistics
Matches: 70, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
23 20 0.29
24 25 0.36
25 25 0.36
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
TTTTATAACTGGGGCATAAGCCCT
Found at i:83652751 original size:23 final size:23
Alignment explanation
Indices: 83652668--83652765 Score: 142
Period size: 23 Copynumber: 4.1 Consensus size: 23
83652658 CCTAGCCTCT
* *
83652668 TTTAGTAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
83652691 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
83652715 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
83652740 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
83652763 TTT
1 TTT
83652766 TGCACTTCCT
Statistics
Matches: 68, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
23 25 0.37
24 20 0.29
25 23 0.34
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:83652840 original size:20 final size:20
Alignment explanation
Indices: 83652812--83652882 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
83652802 GCATTTATGA
* *
83652812 ACATCTCATGTCCATATCAT
1 ACATATCATGTGCATATCAT
83652832 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
83652852 ACATGTCATGTGCATATCAA
1 ACATATCATGTGCATATCAT
*
83652872 AAATATCATGT
1 ACATATCATGT
83652883 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:83654188 original size:27 final size:27
Alignment explanation
Indices: 83654127--83654203 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
83654117 GGCATATTCG
*
83654127 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGA
* *
83654154 TCACTTTACCCTACAGGGGCT-TTACGA
1 TCATTTTACCATACAGGGG-TATTACGA
* *
83654181 TCTTTTTACC-TAATAGGGGTATT
1 TCATTTTACCAT-ACAGGGGTATT
83654204 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
26 2 0.05
27 38 0.93
28 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:83654392 original size:54 final size:54
Alignment explanation
Indices: 83654334--83654473 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
83654324 TGTAAATCAG
*
83654334 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAACAA
* * * * *
83654388 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTATAAAATAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAAACAA
* ** *
83654442 GGGTATTTTAGTAATTTTTTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
83654474 AAACAGTAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAACAA
Found at i:83654472 original size:27 final size:27
Alignment explanation
Indices: 83654249--83654527 Score: 152
Period size: 27 Copynumber: 10.3 Consensus size: 27
83654239 TCTACAAACT
* * * *
83654249 AAGGGTATTTCAGTAATTCTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
** *
83654276 AATAGTATTTCTA-TAATTTTTAGAAAGTC
1 AAGGGTATTT-TAGTAA-TTTTATAAA-TC
* *
83654305 AAGGGTATTTCT-GTAACTTTGTAAATC
1 AAGGGTATTT-TAGTAATTTTATAAATC
* * * *
83654332 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTATAAATC
* ** * * *
83654359 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
83654386 AAGGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
83654412 TAGGGGTATTTTGGTAATTTTATAAAAT-
1 -AAGGGTATTTTAGTAATTTTAT-AAATC
*
83654440 AAGGGTATTTTAGTAATTTTTTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
* **** * *
83654467 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*** *
83654494 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*
83654521 GAGGGTA
1 AAGGGTA
83654528 AAACGGTAAT
Statistics
Matches: 201, Mismatches: 42, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
26 6 0.03
27 165 0.82
28 16 0.08
29 14 0.07
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTATAAATC
Found at i:83654472 original size:81 final size:81
Alignment explanation
Indices: 83654221--83654473 Score: 208
Period size: 81 Copynumber: 3.1 Consensus size: 81
83654211 TTTCATCCTA
* * * * ** * * ** **
83654221 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTCTGTAAACCAATAGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAATAAGGGTATTT
*
83654286 CTA-TAATTTTTAGAAAGT
66 -TAGTAATTTTT-CAAA-T
* * * *
83654304 CAAGGGTATTTCT-GTAACTTTGTA-AATC-AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
1 CAAGGGTATTT-TGGTAA-TTT-TACAAACTAGGGGTATTTTGGTAATTTTATAAAATAAGGGTA
** ** *
83654366 TTTCGGTAATTTCACAAAC
63 TTTTAGTAATTTTTCAAAT
83654385 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAATAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAATAAGGGTATTT
*
83654450 TAGTAATTTTTTAAAT
66 TAGTAATTTTTCAAAT
*
83654466 CGAGGGTA
1 CAAGGGTA
83654474 AAACAGTAAT
Statistics
Matches: 131, Mismatches: 32, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
79 2 0.02
80 7 0.05
81 66 0.50
82 3 0.02
83 46 0.35
84 5 0.04
85 2 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAATAAGGGTATTT
TAGTAATTTTTCAAAT
Found at i:83654528 original size:27 final size:27
Alignment explanation
Indices: 83654451--83654662 Score: 259
Period size: 27 Copynumber: 7.9 Consensus size: 27
83654441 AGGGTATTTT
* *
83654451 AGTAATTTTTTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
83654478 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
83654505 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
83654532 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
83654559 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
83654586 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* *
83654613 AGTAATTATGTAAATCGGGGGTAAAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
83654639 TGATAATTCTGTAAATCGGGGGTA
1 AG-TAATTCTGTAAATCGAGGGTA
83654663 CTTTGGTAAT
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
26 3 0.02
27 161 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:83654764 original size:28 final size:27
Alignment explanation
Indices: 83654668--83654766 Score: 94
Period size: 27 Copynumber: 3.6 Consensus size: 27
83654658 GGGTACTTTG
* * *
83654668 GTAATTTTACAAGTCGAA-GGTATTTTA
1 GTAATTTTACAA-ACTAAGGGTATTTCA
*
83654695 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGGGTATTTCA
* *
83654722 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGGGTATTTCA
*
83654749 GTAATTTTAGTAAACTAA
1 GTAATTTTA-CAAACTAA
83654767 AGTATTCTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.02
27 50 0.85
28 8 0.14
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGGGTATTTCA
Found at i:83657550 original size:22 final size:22
Alignment explanation
Indices: 83657519--83657562 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
83657509 ATAGGAAAGA
*
83657519 AAACTACATAAGCATATAATGC
1 AAACTACATAAGCACATAATGC
*
83657541 AAACTTCATAAGCACATAATGC
1 AAACTACATAAGCACATAATGC
83657563 TTAGTAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.20, G:0.09, T:0.23
Consensus pattern (22 bp):
AAACTACATAAGCACATAATGC
Found at i:83662654 original size:49 final size:46
Alignment explanation
Indices: 83662529--83662707 Score: 180
Period size: 49 Copynumber: 3.7 Consensus size: 46
83662519 GTATAGAGAT
* * *
83662529 GTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCA-TCGC-CTCA-AT-TGATA
*
83662579 G-CTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCAATTTCGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCAA-TT-GATA
* * *
83662628 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTAATGGATGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCAATTGAT-A
* * *
83662675 GCCAATGTAAGACCATGTCTGGGACATTGCATC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATC
83662708 AACACTATAC
Statistics
Matches: 112, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
46 3 0.03
47 32 0.29
48 7 0.06
49 39 0.35
50 31 0.28
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (46 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCAATTGATA
Found at i:83662707 original size:47 final size:47
Alignment explanation
Indices: 83662341--83662707 Score: 197
Period size: 46 Copynumber: 7.7 Consensus size: 47
83662331 CACATTATGA
* *
83662341 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTTAGAT-GA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC--TCA-ATGGAT
* ** *
83662389 GAGCTAGAATAAGA-CATG-CTTGGGACAT-GCATCAGTCTCGAGAT-G-T
1 GAGCCAGTGTAAGACCATGTC-TGGGACATGGCATC-GACTC-A-ATGGAT
* *
83662435 AAACCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACT--ATGAGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATG-GAT
* * * ** * * * ** *
83662479 GTGTCAGTGCAAGACCATGT-TCGAAACATAGCATCAATATGTATAGA-
1 GAGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGA-CTCAATGGAT
* * *
83662526 GATGTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATGTGA-
1 GA-GCCAGTGTAAGACCATGTCTGGGACATGGCA-TCG-ACTCA-ATG-GAT
* * * *
83662577 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCAATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCAA--TGGAT
* *
83662627 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTAATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATGGAT
* *
83662673 GAGCCAATGTAAGACCATGTCTGGGACATTGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
83662708 AACACTATAC
Statistics
Matches: 246, Mismatches: 48, Indels: 51
0.71 0.14 0.15
Matches are distributed among these distances:
41 2 0.01
43 1 0.00
44 11 0.04
45 14 0.06
46 47 0.19
47 47 0.19
48 44 0.18
49 43 0.17
50 33 0.13
51 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.25
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATGGAT
Found at i:83666387 original size:42 final size:42
Alignment explanation
Indices: 83666340--83666431 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
83666330 TGGCCCTTAG
* * *
83666340 GCCCATTTCAATATCACATGTAAT-GTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACT-AATGAATGTATGCAA
83666382 GCCCATTTCAATATCACATGAAATACTAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACTAATGAATGTATGCAA
83666424 GCCCATTT
1 GCCCATTT
83666432 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 45 0.98
43 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACTAATGAATGTATGCAA
Found at i:83667488 original size:27 final size:27
Alignment explanation
Indices: 83667427--83667503 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
83667417 GGCGTATTCA
83667427 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
83667454 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
* *
83667481 TCTTTTTACC-TATTAAGGGTATT
1 TCATTTTACCATA-CAAGGGTATT
83667504 TTAGTCATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
26 3 0.08
27 36 0.90
28 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:83667649 original size:27 final size:25
Alignment explanation
Indices: 83667619--83667704 Score: 73
Period size: 27 Copynumber: 3.2 Consensus size: 25
83667609 GGTATTTCTA
83667619 TAATTTTGTAAATCAGGGTTATTTTGG
1 TAATTTT-TAAATCAGGG-TATTTTGG
* * **
83667646 TAATTTTACAAATTGAGGGTATTTCAG
1 TAATTTT-TAAA-TCAGGGTATTTTGG
*
83667673 TAATTTCTTAAACCAGTGGTATTTTGG
1 TAATTT-TTAAATCAG-GGTATTTTGG
83667700 TAATT
1 TAATT
83667705 CTATCCTACA
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
26 2 0.04
27 38 0.83
28 6 0.13
ACGTcount: A:0.29, C:0.07, G:0.19, T:0.45
Consensus pattern (25 bp):
TAATTTTTAAATCAGGGTATTTTGG
Found at i:83667772 original size:27 final size:27
Alignment explanation
Indices: 83667736--83667827 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
83667726 GTTATTTCAC
83667736 AATCGAGGGTAAAACGGTAATTTTGCA
1 AATCGAGGGTAAAACGGTAATTTTGCA
* *
83667763 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGCA
* * **
83667790 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGCA
83667817 AATCGAGGGTA
1 AATCGAGGGTA
83667828 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.02
27 55 0.96
28 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGCA
Found at i:83670216 original size:42 final size:42
Alignment explanation
Indices: 83670169--83670260 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
83670159 TGGCCCTTAG
* ** *
83670169 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
83670211 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
83670253 GCCCATTT
1 GCCCATTT
83670261 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:83671316 original size:27 final size:27
Alignment explanation
Indices: 83671255--83671318 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
83671245 GGCGTATTCA
83671255 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
83671282 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
83671309 TCTTTTTACC
1 TCATTTTACC
83671319 TATTAGGGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:83671478 original size:57 final size:54
Alignment explanation
Indices: 83671378--83671506 Score: 143
Period size: 57 Copynumber: 2.3 Consensus size: 54
83671368 CTACAAACCA
* *
83671378 AGGGTATTT-TAGTAATTTTGTAAACCAATGGTATTCCTATAATTTTTAAAAAAGTCG
1 AGGGTATTTCT-GTAATTTTGTAAACCAAGGGTATTCCGATAA-TTTT-AAAAA-TCG
* * * * *
83671435 AGGGTATTTCTGTAATTTTGTAAATCAAGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCTGTAATTTTGTAAACCAAGGGTATTCCGATAATTTTAAAAATCG
*
83671489 AGGGTATTTCGGTAATTT
1 AGGGTATTTCTGTAATTT
83671507 CTCAAACCAG
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
54 19 0.30
55 4 0.06
56 4 0.06
57 35 0.56
58 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (54 bp):
AGGGTATTTCTGTAATTTTGTAAACCAAGGGTATTCCGATAATTTTAAAAATCG
Found at i:83671486 original size:27 final size:27
Alignment explanation
Indices: 83671349--83671532 Score: 102
Period size: 27 Copynumber: 6.7 Consensus size: 27
83671339 TTTCATCCTA
* * * * *
83671349 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
** ** *
83671376 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * ** *
83671403 CAATGGTATTCCTATAATTTTTAAAAAAGT
1 CAAGGGTATTTCGGTAA-TTTT-ACAAA-T
* * **
83671433 CGAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
83671460 CAAGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
**
83671487 TGAGGGTATTTCGGTAATTTCT-CAAA-
1 CAAGGGTATTTCGGTAATTT-TACAAAT
* *
83671513 CCAGTGGTATTTTGGTAATT
1 CAAG-GGTATTTCGGTAATT
83671533 CTATCCTATA
Statistics
Matches: 123, Mismatches: 29, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
26 2 0.02
27 93 0.76
28 8 0.07
29 7 0.06
30 13 0.11
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:83671598 original size:27 final size:27
Alignment explanation
Indices: 83671564--83671655 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
83671554 GTAATTTCAC
83671564 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
83671591 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* * *
83671618 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
83671645 AATCGAGGGTA
1 AATCGAGGGTA
83671656 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:83671680 original size:54 final size:54
Alignment explanation
Indices: 83671554--83671680 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
83671544 GGGTATTTCA
* * * *
83671554 GTAATTTCAC-AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
** ***
83671607 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAA-TCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAACT-GAGGGTAAAATG
*
83671661 GTAATTTTACAAATTGAGGG
1 GTAATTTTACAAATCGAGGG
83671681 CATTTCAGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
53 8 0.13
54 52 0.87
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (54 bp):
GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
Found at i:83674939 original size:16 final size:17
Alignment explanation
Indices: 83674918--83674958 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
83674908 TCGGCAGATC
83674918 CCGAAAAGCCA-AAATG
1 CCGAAAAGCCAGAAATG
83674934 CCGAAAAG-CAGAAATG
1 CCGAAAAGCCAGAAATG
*
83674950 CCAAAAAGC
1 CCGAAAAGC
83674959 TGAAAAACTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 2 0.09
16 20 0.91
ACGTcount: A:0.51, C:0.24, G:0.20, T:0.05
Consensus pattern (17 bp):
CCGAAAAGCCAGAAATG
Found at i:83674963 original size:16 final size:16
Alignment explanation
Indices: 83674929--83674963 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
83674919 CGAAAAGCCA
*
83674929 AAATGCCGAAAAGCAG
1 AAATGCCAAAAAGCAG
*
83674945 AAATGCCAAAAAGCTG
1 AAATGCCAAAAAGCAG
83674961 AAA
1 AAA
83674964 AACTGAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.54, C:0.17, G:0.20, T:0.09
Consensus pattern (16 bp):
AAATGCCAAAAAGCAG
Found at i:83675101 original size:19 final size:17
Alignment explanation
Indices: 83675071--83675114 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
83675061 TGGGTTGTGA
*
83675071 AATGGG-TGAATGGGCC
1 AATGGGCTGAATGGACC
83675087 AGAATGGGCTGAATGGACC
1 --AATGGGCTGAATGGACC
83675106 AATGGGCTG
1 AATGGGCTG
83675115 TTGGGCCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 9 0.38
18 6 0.25
19 9 0.38
ACGTcount: A:0.27, C:0.14, G:0.41, T:0.18
Consensus pattern (17 bp):
AATGGGCTGAATGGACC
Found at i:83675255 original size:28 final size:28
Alignment explanation
Indices: 83675184--83675290 Score: 119
Period size: 28 Copynumber: 3.8 Consensus size: 28
83675174 AGCATAACTG
* *
83675184 TAAATGTGATTGGGCCTAAT-GGTCGTA
1 TAAATGTGATTGGGCCTAATGGGCCATA
* * *
83675211 TAAATATGATTTAGGCCTAATGGGCCACA
1 TAAATGTGA-TTGGGCCTAATGGGCCATA
83675240 TAAATGTGATTGGGCCTAATGGGCCATA
1 TAAATGTGATTGGGCCTAATGGGCCATA
* *
83675268 TGAAAT-AGATGGGGCCTAATGGG
1 T-AAATGTGATTGGGCCTAATGGG
83675291 TTATATGCAA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 8 0.12
28 43 0.64
29 16 0.24
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.28
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAATGGGCCATA
Found at i:83675284 original size:56 final size:56
Alignment explanation
Indices: 83675184--83675290 Score: 146
Period size: 56 Copynumber: 1.9 Consensus size: 56
83675174 AGCATAACTG
* * *
83675184 TAAATGTGATTGGGCCTAATGGTCGTATAAATATGATTTAGGCCTAATGGGCCACA
1 TAAATGTGATTGGGCCTAATGGCCATATAAATATGATTGAGGCCTAATGGGCCACA
*
83675240 TAAATGTGATTGGGCCTAATGGGCCATATGAAATA-GA-TGGGGCCTAATGGG
1 TAAATGTGATTGGGCCTAAT-GGCCATAT-AAATATGATTGAGGCCTAATGGG
83675291 TTATATGCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
56 32 0.71
57 8 0.18
58 5 0.11
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.28
Consensus pattern (56 bp):
TAAATGTGATTGGGCCTAATGGCCATATAAATATGATTGAGGCCTAATGGGCCACA
Found at i:83678227 original size:30 final size:30
Alignment explanation
Indices: 83678193--83678253 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
83678183 TCCTTAACTC
83678193 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
83678223 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
83678253 A
1 A
83678254 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:83682668 original size:30 final size:30
Alignment explanation
Indices: 83682634--83682694 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
83682624 TCCTTAACTC
83682634 AAACTTTGGACA-AATTACAATTTTGCCCCT
1 AAACTTTGG-CATAATTACAATTTTGCCCCT
* * *
83682664 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCATAATTACAATTTTGCCCCT
83682694 A
1 A
83682695 GGCTTAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCATAATTACAATTTTGCCCCT
Found at i:83690705 original size:27 final size:27
Alignment explanation
Indices: 83690674--83690735 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
83690664 GCCTAAGTCC
* *
83690674 TTTCAGTATCAGTTAGGCCTTAGCCTA
1 TTTCAGTATCAATTAGGCCTTAGCCCA
83690701 TTTCAGTATCAATTAGGCCTTAGCCCA
1 TTTCAGTATCAATTAGGCCTTAGCCCA
83690728 TTTCAGTA
1 TTTCAGTA
83690736 ACCCTAGCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (27 bp):
TTTCAGTATCAATTAGGCCTTAGCCCA
Found at i:83722867 original size:23 final size:22
Alignment explanation
Indices: 83722841--83722955 Score: 99
Period size: 23 Copynumber: 4.9 Consensus size: 22
83722831 GATGGATTAT
*
83722841 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATACTGGTGTGTTT-GGAGG
83722864 ATTATATGATACTGGTGT-TTTGGAGG
1 A-T-TA---TACTGGTGTGTTTGGAGG
83722890 ATTATACTGGTGTGTTTTGGAGG
1 ATTATACTGGTGTG-TTTGGAGG
*
83722913 ATTATACTGGTGTGTTTTGGTTGG
1 ATTATACTGGTGTG-TTTGG-AGG
* *
83722937 A-CATATTGGTGTGTTTGGA
1 ATTATACTGGTGTGTTTGGA
83722956 TGGAATCCGT
Statistics
Matches: 79, Mismatches: 5, Indels: 18
0.77 0.05 0.18
Matches are distributed among these distances:
21 9 0.11
22 5 0.06
23 39 0.49
24 6 0.08
25 3 0.04
26 6 0.08
27 3 0.04
28 8 0.10
ACGTcount: A:0.17, C:0.04, G:0.34, T:0.44
Consensus pattern (22 bp):
ATTATACTGGTGTGTTTGGAGG
Found at i:83723160 original size:22 final size:23
Alignment explanation
Indices: 83723123--83723167 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
83723113 GCTTTACTGA
*
83723123 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCATATT
83723146 TCAGGCAC-TTATGTGTCATATT
1 TCAGGCACTTTATGTGTCATATT
83723168 CTGATCAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCATATT
Found at i:83724370 original size:46 final size:46
Alignment explanation
Indices: 83724234--83724360 Score: 209
Period size: 46 Copynumber: 2.8 Consensus size: 46
83724224 TATATATACA
* * *
83724234 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
* *
83724280 GATCTCATACACCTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
83724326 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
83724361 CGCCACATAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:83724413 original size:22 final size:22
Alignment explanation
Indices: 83724387--83724462 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
83724377 TTCCACATTC
83724387 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCTACCTT
* *
83724409 ATCACATATATG-CATGT-TCACATT
1 ATCACAT-T-GGCCAT-TCT-ACCTT
83724433 CATCACATTGGCCATTC-AGCCTT
1 -ATCACATTGGCCATTCTA-CCTT
83724456 ATCACAT
1 ATCACAT
83724463 ATATGCATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 10 0.24
25 7 0.17
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTACCTT
Found at i:83724415 original size:47 final size:47
Alignment explanation
Indices: 83724380--83724671 Score: 512
Period size: 47 Copynumber: 6.2 Consensus size: 47
83724370 TATACACTTC
**
83724380 CACATTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
*
83724427 CACATTCATCACATTGGCCATTCAGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
* *
83724474 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
*
83724521 CACATTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
*
83724568 CACATTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
*
83724615 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGTATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
83724662 CACATTCATC
1 CACATTCATC
83724672 TCATAAAATC
Statistics
Matches: 235, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 235 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
Found at i:83728609 original size:54 final size:53
Alignment explanation
Indices: 83728452--83728653 Score: 237
Period size: 54 Copynumber: 3.8 Consensus size: 53
83728442 TTAGTTTACC
* * * * * * *
83728452 AAATTACAGAAATACCCCCAG-TTATAAAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACCGAAATACCCTC-GTTTGTAAAATTACTGAAA-TACCCTCGATTTGTA
* * * *
83728505 AAATTACCGAAATACCATCGATTGTAAAATTACTGAAATACCATCAATTTGTA
1 AAATTACCGAAATACCCTCGTTTGTAAAATTACTGAAATACCCTCGATTTGTA
*
83728558 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTC-GTTTGTAAAATTACTGAAATACCCTCGATTTGTA
*
83728612 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATAC
1 AAATTACCGAAATACCCTCG-TTTGTAAAATTACTGAAATAC
83728654 TCCTGTAAGA
Statistics
Matches: 128, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 1 0.01
53 56 0.44
54 71 0.55
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (53 bp):
AAATTACCGAAATACCCTCGTTTGTAAAATTACTGAAATACCCTCGATTTGTA
Found at i:83728695 original size:27 final size:27
Alignment explanation
Indices: 83728665--83728834 Score: 268
Period size: 27 Copynumber: 6.3 Consensus size: 27
83728655 CCTGTAAGAT
83728665 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
83728692 AGAATTATCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
83728719 AGAATTACCATTTTACCCTTGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
83728746 AGAATTACCGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
83728773 AGAATTACCATTTTACCCTCTATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
83728800 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
83728827 AAAATTAC
1 AGAATTAC
83728835 TGAAATACCT
Statistics
Matches: 128, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:83728843 original size:27 final size:27
Alignment explanation
Indices: 83728446--83728925 Score: 204
Period size: 27 Copynumber: 17.9 Consensus size: 27
83728436 AATACTTTAG
* *
83728446 TTTACCAAATTA-CAGAAATACCC-CCA
1 TTTACAAAATTACCA-AAATACCCTCGA
* * * * *
83728472 GTTATAAAATTACCAAAGTACCCCCGG
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
83728499 TTTATAAAATTACCGAAATACCATCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
83728526 TTGT--AAAATTACTGAAATACCATCAA
1 TT-TACAAAATTACCAAAATACCCTCGA
** *
83728552 TTTGTAAAATTACCGAAATACCCTC-A
1 TTTACAAAATTACCAAAATACCCTCGA
* **
83728578 GTTTGCAAAATTACTGAAATACCCTCGA
1 -TTTACAAAATTACCAAAATACCCTCGA
** **
83728606 TTTGTAAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** **
83728633 TTTGTAAAATTACTGAAATACTCCT-G-
1 TTTACAAAATTACCAAAATAC-CCTCGA
* * ***
83728659 -TAAGATAGAATTACCATTTTACCCTCGA
1 TTTACA-A-AATTACCAAAATACCCTCGA
* * ***
83728687 TTTACAGAATTATCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *** *
83728714 TTTATAGAATTACCATTTTACCCTTGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
83728741 TTTACAGAATTACCGTCTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *** *
83728768 TTTACAGAATTACCATTTTACCCTCTA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ***
83728795 TTTATAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * * *
83728822 TTTACAAAATTACTGAAATACCTTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
83728849 TTTACAAAATTACCAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
83728876 TCAATAAAATTACCAAAATACCC-CTGG
1 TTTACAAAATTACCAAAATACCCTC-GA
**
83728903 TTTGTAAAATTACCAAAATACCC
1 TTTACAAAATTACCAAAATACCC
83728926 CTGATTTGTG
Statistics
Matches: 375, Mismatches: 65, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
25 3 0.01
26 44 0.12
27 320 0.85
28 5 0.01
29 3 0.01
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:83728853 original size:81 final size:81
Alignment explanation
Indices: 83728678--83728890 Score: 264
Period size: 81 Copynumber: 2.6 Consensus size: 81
83728668 ATTACCATTT
* *
83728678 TACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
* ***
83728743 TACAGAATTACCGTCT
66 TACAAAATTACCGAAA
*
83728759 TACCCTCGATTTACAGAATTACCATTTTACCCTCTATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
*
83728824 TACAAAATTACTGAAA
66 TACAAAATTACCGAAA
* * * * *** ** *
83728840 TACCTTTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCA
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
83728891 AAATACCCCT
Statistics
Matches: 113, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 113 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
TACAAAATTACCGAAA
Found at i:83728952 original size:27 final size:27
Alignment explanation
Indices: 83728854--83728941 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
83728844 TTTGGTTTAC
***
83728854 AAAATTACCAAAATA-CCCTCGATCAAT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
83728881 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
83728908 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
83728935 GAAATTA
1 AAAATTA
83728942 TTGAAATACC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 50 0.93
28 4 0.07
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:83728967 original size:27 final size:27
Alignment explanation
Indices: 83728944--83729240 Score: 432
Period size: 27 Copynumber: 11.0 Consensus size: 27
83728934 TGAAATTATT
* *
83728944 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
**
83728971 GAAATACCTTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
83728998 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
83729025 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
83729052 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
83729079 GGAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
83729106 GGAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
83729133 GGAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
83729160 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
83729187 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * * *
83729214 TAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
83729241 ATTTTACCCC
Statistics
Matches: 248, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 248 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:83728968 original size:54 final size:55
Alignment explanation
Indices: 83728883--83729240 Score: 417
Period size: 54 Copynumber: 6.6 Consensus size: 55
83728873 CGATCAATAA
* ** * * **
83728883 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTGAT-TTGT-G
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACCGAAATACCCCTGATAGGGTAG
** * * **
83728936 AAATTATTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCTTTG-TAGGGTAG
1 -AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGATAGGGTAG
*
83728991 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCT-ATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGATAGGGTAG
* *
83729045 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGGAATACCCCT-ATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGATAGGGTAG
* *
83729099 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTG-TAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGATAGGGTAG
* *
83729153 AATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTG-TAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGATAGGGTAG
* * * * *
83729207 AATTACCTAGATACCCTTGTGGGGTAAAATTACC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACC
83729241 ATTTTACCCC
Statistics
Matches: 266, Mismatches: 33, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
53 3 0.01
54 262 0.98
55 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (55 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGATAGGGTAG
Found at i:83728968 original size:81 final size:82
Alignment explanation
Indices: 83728883--83729241 Score: 363
Period size: 81 Copynumber: 4.4 Consensus size: 82
83728873 CGATCAATAA
* ** ** *
83728883 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGT-GAAATTATTG
1 AATTACCGAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTA-GGGTAG-AATTATCG
* *
83728945 AAATACCCTTGTAGGGTAG
64 AAATACCCCTATAGGGTAG
* * * * *
83728964 AATTACTGAAATA-CCTTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAA
1 AATTACCGAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAA
83729028 ATACCCCTATAGGGTAG
66 ATACCCCTATAGGGTAG
* * ** * * *
83729045 AATTACCGAAATACCCCT-GTAGGGTAGAATTATCGGAATACCCCTATAGGGTAGAATTACCGGA
1 AATTACCGAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAA
*
83729109 ATACCCCTGTAGGGTAG
66 ATACCCCTATAGGGTAG
* * * * * *
83729126 AATTACCGGAATACCCCT-GTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCAAA
1 AATTACCGAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAA
*
83729190 ATACCCCTGTAGGGTAG
66 ATACCCCTATAGGGTAG
* * * *
83729207 AATTACCTAGATA-CCCTTGTGGGGTAAAATTACCA
1 AATTACCGAAATACCCCTGGTAGGGTAAAATTACCA
83729242 TTTTACCCCT
Statistics
Matches: 241, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
80 9 0.04
81 227 0.94
82 5 0.02
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (82 bp):
AATTACCGAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAA
ATACCCCTATAGGGTAG
Found at i:83729621 original size:22 final size:22
Alignment explanation
Indices: 83729588--83729646 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
83729578 CACGTTATTG
83729588 ATGG-TTCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
83729610 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
83729632 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
83729647 ATGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 28 0.90
23 3 0.10
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:83729799 original size:27 final size:26
Alignment explanation
Indices: 83729763--83729815 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
83729753 GTTATTACAG
*
83729763 TTATCGATTCTAGTGGCTTTGCCACA
1 TTATCGATTCTAGTGGCTATGCCACA
*
83729789 TTATCTGATTCTGGTGGCTATGCCACA
1 TTATC-GATTCTAGTGGCTATGCCACA
83729816 AATATCTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TTATCGATTCTAGTGGCTATGCCACA
Found at i:83736563 original size:6 final size:6
Alignment explanation
Indices: 83736554--83736696 Score: 105
Period size: 6 Copynumber: 23.3 Consensus size: 6
83736544 TTGCATTCAC
* *
83736554 ATTCTG ATTCTA ATTCT- ATTACCTG ATTCTG ATTCTG GTTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
83736603 ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
83736653 ATTTTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
83736697 AATTTTTCTT
Statistics
Matches: 109, Mismatches: 17, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
5 7 0.06
6 89 0.82
7 8 0.07
8 5 0.05
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:83736607 original size:37 final size:37
Alignment explanation
Indices: 83736554--83736675 Score: 163
Period size: 37 Copynumber: 3.3 Consensus size: 37
83736544 TTGCATTCAC
* *
83736554 ATTCTGATTCTAATTCTATTACCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTGATTCTG
* *
83736591 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTGATTCTG
* * * * *
83736628 ATTTTGATTTTGATTCTGTCACCTAATTTTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTGATTCTG
83736665 ATTCTGATTCT
1 ATTCTGATTCT
83736676 CATTTTGATT
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTGATTCTG
Found at i:83739595 original size:27 final size:28
Alignment explanation
Indices: 83739514--83739608 Score: 120
Period size: 27 Copynumber: 3.4 Consensus size: 28
83739504 GAGATTGGCG
* * * *
83739514 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
83739543 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
83739571 CTAAGTGTGTGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
83739598 CTGAGTGTGCG
1 CTAAGTGTGCG
83739609 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.39
28 21 0.36
29 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:83739619 original size:27 final size:27
Alignment explanation
Indices: 83739539--83739621 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
83739529 TAAATTGTAC
* * *
83739539 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGGGA-CTTGAATATAT
* * *
83739567 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGGGACTTGAATATAT
*
83739594 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTG-GGACTTGAATATAT
83739621 A
1 A
83739622 TTTTTGAATC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 29 0.60
28 19 0.40
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGGGACTTGAATATAT
Found at i:83747462 original size:27 final size:28
Alignment explanation
Indices: 83747381--83747475 Score: 129
Period size: 27 Copynumber: 3.4 Consensus size: 28
83747371 GAGATTGGCG
* * * *
83747381 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
83747410 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
83747438 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
83747465 CTGAGTGTGCG
1 CTAAGTGTGCG
83747476 GACTTAATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.39
28 22 0.36
29 15 0.25
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:83747489 original size:29 final size:27
Alignment explanation
Indices: 83747406--83747489 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
83747396 TAAATTGTAC
* *
83747406 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
83747434 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
83747461 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
83747490 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:83749667 original size:16 final size:16
Alignment explanation
Indices: 83749646--83749676 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
83749636 CATTAGTTAC
83749646 AAATCACAAATTCATA
1 AAATCACAAATTCATA
83749662 AAATCACAAATTCAT
1 AAATCACAAATTCAT
83749677 GCAATTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.19, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATCACAAATTCATA
Found at i:83749831 original size:21 final size:20
Alignment explanation
Indices: 83749803--83749841 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
83749793 CAAAACTTGT
83749803 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
83749823 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
83749842 CAAAATACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:83753717 original size:20 final size:21
Alignment explanation
Indices: 83753680--83753722 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
83753670 CAGAACAGGG
*
83753680 TTACAAAGCATTACCAAA-AT
1 TTACAAAACATTACCAAACAT
83753700 TTACAAAACAATTA-CAAACAT
1 TTACAAAAC-ATTACCAAACAT
83753721 TT
1 TT
83753723 CATGTCATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.28
Consensus pattern (21 bp):
TTACAAAACATTACCAAACAT
Found at i:83756329 original size:45 final size:46
Alignment explanation
Indices: 83756261--83756429 Score: 181
Period size: 45 Copynumber: 3.7 Consensus size: 46
83756251 TAACCGGCCC
*
83756261 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
83756307 TAAGTGAACTC-GACTCAACTCAACGAGTT-GGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
83756353 TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
83756397 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
83756430 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 11, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 1 0.01
44 4 0.04
45 49 0.49
46 34 0.34
47 1 0.01
48 3 0.03
49 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:83756375 original size:91 final size:92
Alignment explanation
Indices: 83756266--83756433 Score: 286
Period size: 91 Copynumber: 1.8 Consensus size: 92
83756256 GGCCCTAAGT
* *
83756266 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83756330 CGAGTT-GGATGCCTAGTTACATTTCAC
65 CGAGTTCGGATGCCTAGTTACATTTCAC
*
83756357 GAACTCGGACTCAACTCAACGAGTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
83756422 GAGTTCGGATGC
66 GAGTTCGGATGC
83756434 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
90 23 0.32
91 43 0.60
92 6 0.08
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Found at i:83764228 original size:30 final size:30
Alignment explanation
Indices: 83764194--83764253 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
83764184 ATTTAATACG
*
83764194 AACTTTGGAAAAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
83764224 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
83764254 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:83765291 original size:24 final size:24
Alignment explanation
Indices: 83765264--83765313 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
83765254 AGCCGTAATT
*
83765264 GGGAAGTTCACAAAAAACCTTATC
1 GGGAAGTTCACAAAAAACCATATC
*
83765288 GGGAAGTTCACAAAGAACCATATC
1 GGGAAGTTCACAAAAAACCATATC
83765312 GG
1 GG
83765314 AAAGCTATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.18
Consensus pattern (24 bp):
GGGAAGTTCACAAAAAACCATATC
Found at i:83770141 original size:93 final size:93
Alignment explanation
Indices: 83769980--83770151 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
83769970 CGCCCATAAG
* * *
83769980 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTAA
83770045 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
83770073 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTAA
83770138 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
83770152 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTAA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83770148 original size:46 final size:46
Alignment explanation
Indices: 83769973--83770148 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
83769963 TGTAACCCGC
* * *
83769973 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
83770019 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
83770069 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
83770112 CCATAAGTGAACTCGGACTCAACTAAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
83770149 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83777094 original size:45 final size:45
Alignment explanation
Indices: 83776990--83777254 Score: 385
Period size: 45 Copynumber: 6.0 Consensus size: 45
83776980 CCGAATTCAT
* * * * *
83776990 TCACCAGCATT-TTGCCTGCTAGGCTCGAA-GCTCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
83777032 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCAGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
83777077 TCACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
83777122 TCACCGGTATTATAGCATGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
83777167 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
83777212 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
83777255 CTATACGATA
Statistics
Matches: 206, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
42 10 0.05
43 17 0.08
44 3 0.01
45 175 0.85
46 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:83778845 original size:47 final size:47
Alignment explanation
Indices: 83778728--83778847 Score: 204
Period size: 47 Copynumber: 2.6 Consensus size: 47
83778718 CCTAAGTGAG
* * *
83778728 CTCGGACTCAACTCAATGAGTTCAGATGCCTAGTTACATTTCATGAA
1 CTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCACGAA
83778775 CTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCACGAA
1 CTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCACGAA
*
83778822 CTCGGACTCAACTCAACGAGTTCGGA
1 CTCGGACTCAACTCAATGAGTTCGGA
83778848 CATTTGCATC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (47 bp):
CTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCACGAA
Found at i:83779355 original size:30 final size:30
Alignment explanation
Indices: 83779321--83779380 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
83779311 ATTTAATACG
83779321 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
83779351 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
83779381 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:83785045 original size:45 final size:45
Alignment explanation
Indices: 83784982--83785145 Score: 183
Period size: 45 Copynumber: 3.6 Consensus size: 45
83784972 CCGCCCTAAG
* *
83784982 TGAACTCGACTCAACTCAACGAGCTCGGGC-GTCGCATCCATAAA
1 TGAACTCGACTCAACTCAACGAGTTCGGGCAGTTGCATCCATAAA
* *
83785026 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTAGTTACAT-C-T-CA
1 TGAACTC-GACTCAACTCAACGAGTTCGG--GC-AGTTGCATCCATAAA
* * * *
83785072 CGAACTCGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGACTCAACTCAACGAGTTCGGGCAGTTGCATCCATAAA
83785117 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTC-GACTCAACTCAACGAGTTCGG
83785146 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 11, Indels: 16
0.79 0.09 0.13
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 8 0.08
45 47 0.47
46 28 0.28
47 3 0.03
48 1 0.01
49 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGACTCAACTCAACGAGTTCGGGCAGTTGCATCCATAAA
Found at i:83785137 original size:91 final size:90
Alignment explanation
Indices: 83784983--83785150 Score: 282
Period size: 91 Copynumber: 1.9 Consensus size: 90
83784973 CGCCCTAAGT
*
83784983 GAACTCGACTCAACTCAACGAGCTCGGGCGTCGCATCCATAAATGAACTCGGACTCAACTCAACG
1 GAACTCGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAATGAACTCGGACTCAACTCAACG
83785048 AGTTCGGATGCTAGTTACATCTCAC
66 AGTTCGGATGCTAGTTACATCTCAC
* * * *
83785073 GAACTCGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGGAC-GTCGCATCCATAAATGAACTCGGACTCAACTCAAC
83785138 GAGTTCGGATGCT
65 GAGTTCGGATGCT
83785151 CAACCATCCT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
90 27 0.38
91 45 0.62
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (90 bp):
GAACTCGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAATGAACTCGGACTCAACTCAACG
AGTTCGGATGCTAGTTACATCTCAC
Found at i:83787639 original size:46 final size:46
Alignment explanation
Indices: 83787589--83787713 Score: 209
Period size: 46 Copynumber: 2.7 Consensus size: 46
83787579 TGGTTGAGCA
*
83787589 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
83787635 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
83787681 -CCTGAGCTCGTTGAGTTGAGT-CGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83787714 GGGGCGGGTT
Statistics
Matches: 76, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
45 14 0.18
46 62 0.82
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:83795118 original size:46 final size:45
Alignment explanation
Indices: 83795065--83795237 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
83795055 TGGTTGAGCA
83795065 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * * * *
83795111 TCGGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
83795156 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
83795204 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83795238 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.56
47 27 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:83795221 original size:93 final size:93
Alignment explanation
Indices: 83795062--83795232 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
83795052 GGATGGTTGA
* * *
83795062 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83795127 TGAGT-TCGAGTTCGTGAAATGTAACTAG
66 TGAGTCT-GAGTTCGTGAAATGTAACTAG
* * *
83795155 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83795220 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
83795233 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAAATGTAACTAG
Found at i:83797342 original size:25 final size:25
Alignment explanation
Indices: 83797314--83797618 Score: 495
Period size: 25 Copynumber: 12.2 Consensus size: 25
83797304 ATAATAAGGG
**
83797314 CAAATTTAACTAGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
83797339 CAAATTTAACCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
*
83797364 CAAATTTAACCGGAATTATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
*
83797389 CAAATTTAACTGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
83797414 CAAATTTAACCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
*
83797439 CAAATTTAACCGGAATTATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
83797464 CAAATTTAACCGGAATTATTAAG-A
1 CAAATTTAACCGGAATTATTAAGAA
* *
83797488 CAAATGTAACCAGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
* *
83797513 CAAATTTAACCAGAATTATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
*
83797538 CAAATTTAATCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
*
83797563 CAAATTTAACCGGAATTATTAAGAG
1 CAAATTTAACCGGAATTATTAAGAA
*
83797588 CAAATTTAATCGGAATTATTAAGAA
1 CAAATTTAACCGGAATTATTAAGAA
83797613 CAAATT
1 CAAATT
83797619 AACAAGCTTA
Statistics
Matches: 260, Mismatches: 19, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
24 21 0.08
25 239 0.92
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (25 bp):
CAAATTTAACCGGAATTATTAAGAA
Found at i:83804933 original size:26 final size:28
Alignment explanation
Indices: 83804873--83804941 Score: 97
Period size: 26 Copynumber: 2.5 Consensus size: 28
83804863 GTGACAGAGT
* *
83804873 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTATGCGGCAGTGC
83804902 CACCAGAACAGATA-TATGCGGCAG-GC
1 CACCAGAACAGATATTATGCGGCAGTGC
83804928 CACCAGAACAGATA
1 CACCAGAACAGATA
83804942 ATTTGTGGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 16 0.42
27 8 0.21
28 7 0.18
29 7 0.18
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (28 bp):
CACCAGAACAGATATTATGCGGCAGTGC
Found at i:83816421 original size:47 final size:49
Alignment explanation
Indices: 83816347--83816656 Score: 152
Period size: 46 Copynumber: 6.6 Consensus size: 49
83816337 TATAATGCCA
* *
83816347 ATGCCATGTCCCAGACATGGTCCTACACTGGCTA-ATC-TAT-CAAGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATA-CATATCCAAGCTG
* * * *
83816394 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-ACATATCCAAGCTG
* * * ** **
83816444 ATGCCATGTCCCAAACATGGTCTTACACT-G--ACACATCTCGTAGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATACATATCCAAGCTG
* * *
83816490 ATG-CATGTCCTAGACAT-GTCTTACATTGGCT-TACATCT-CAAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATACATATCCAA-GCTG
* * * * * * * *
83816536 AT-ACATGTCCTAGACAT-GTGTTACACTAGCTCT-CGTCT-TAATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATACATATCCAA-GCTG
* * * * * *** *
83816582 ATGTCATGTCCCGGCCATGGTCATACACTGGCTCT-CATAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATACAT-ATCCAAGCTG
83816630 ATG-CATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
83816657 AGCACACAAA
Statistics
Matches: 204, Mismatches: 46, Indels: 27
0.74 0.17 0.10
Matches are distributed among these distances:
44 9 0.04
45 14 0.07
46 67 0.33
47 54 0.26
48 22 0.11
49 6 0.03
50 32 0.16
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTATACATATCCAAGCTG
Found at i:83830545 original size:47 final size:48
Alignment explanation
Indices: 83830471--83830598 Score: 154
Period size: 47 Copynumber: 2.6 Consensus size: 48
83830461 GTATACTATT
*
83830471 GATGGCATGTCCCAGACATGGTCTTACACTGGCTCATC-CAT-CAAGT-C
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATAC-AGTCC
* * * *
83830518 GATGCCATGTCTCGGACATGGTCTTACACTAGCTCTCACATATCCGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATA-CAGT-CC
83830568 GATGCCATGTCCCAGACATGGTCTTACACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
83830599 ACACATCTCG
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
46 2 0.03
47 34 0.50
48 2 0.03
49 1 0.01
50 29 0.43
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATACAGTCC
Found at i:83830785 original size:46 final size:47
Alignment explanation
Indices: 83830475--83830785 Score: 189
Period size: 46 Copynumber: 6.6 Consensus size: 47
83830465 ACTATTGATG
*
83830475 GCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA--GT--CGAT
1 GCATGTCCCAGACATGGTCTTACACTAGCTC-T-CAT-AATCGTGCCGAT
* * *
83830521 GCCATGTCTCGGACATGGTCTTACACTAGCTCTCACATATCCGTGCCGAT
1 G-CATGTCCCAGACATGGTCTTACACTAGCTCTCATA-AT-CGTGCCGAT
* * *
83830571 GCCATGTCCCAGACATGGTCTTACACT-G-ACACAT-CTCGTAGCCGAT
1 G-CATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCGT-GCCGAT
* * * * * * *
83830617 GCATATCCTATACAT-GTCTTACACTGGCT-TACAT-CTCGAGGTCGAT
1 GCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAATCG-TGCCGAT
* * * ** ** *
83830663 GCATGTCCCAAAAAT-GTCTTACATCTAGCTCTCGTCTTAATGCTGAT
1 GCATGTCCCAGACATGGTCTTACA-CTAGCTCTCATAATCGTGCCGAT
* * *
83830710 GTCATGTCCCGGCCATGGTCATACACTAGCTCTCATAAT-GTGGCCGAT
1 G-CATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCGT-GCCGAT
83830758 GCATGTCCCAGACAT-GTCTTACACTAGC
1 GCATGTCCCAGACATGGTCTTACACTAGC
83830786 ACACAAATAA
Statistics
Matches: 205, Mismatches: 42, Indels: 36
0.72 0.15 0.13
Matches are distributed among these distances:
44 11 0.05
45 18 0.09
46 53 0.26
47 52 0.25
48 34 0.17
49 8 0.04
50 29 0.14
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCGTGCCGAT
Found at i:83835406 original size:55 final size:54
Alignment explanation
Indices: 83835281--83835577 Score: 314
Period size: 55 Copynumber: 5.5 Consensus size: 54
83835271 AACTTACCAT
* ** * *
83835281 TGCCATGTCTTGACATGGTCTTATGTGGCATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTATAGAACTCATCAA
*
83835334 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAG-AACTCATCAA
* * * * *
83835389 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTA-CGAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAGAACTCATCAA
* * * *
83835442 TGCCATGCCCTGGCATGGTCTTATATGGGACCTTTGCTTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAG-AACTCATCAA
* * *** *
83835497 TACCATGTCTTGACATGGTCTTACATGATTTCC-TTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GGACCTTTGCCTTATAGAACTCATCAA
* * *
83835551 TTCCATGCCTTGGCATGGCCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
83835578 ATATCCTTAT
Statistics
Matches: 203, Mismatches: 35, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
52 2 0.01
53 77 0.38
54 35 0.17
55 87 0.43
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAGAACTCATCAA
Found at i:83835470 original size:108 final size:108
Alignment explanation
Indices: 83835281--83835577 Score: 441
Period size: 108 Copynumber: 2.7 Consensus size: 108
83835271 AACTTACCAT
** * *
83835281 TGCCATGTCTTGACATGGTCTTATGTGGCATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAAGAACTCACCAATGCCATGCCTTG
83835346 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
* * *
83835389 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTACGAACTCACCAATGCCATGCCCTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAAGAACTCACCAATGCCATGCCTTG
* *
83835454 GCATGGTCTTATATGGGACCTTTGCTTTATAGTAACTCATCAA
66 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
* * * * * *
83835497 TACCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATTCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-AGAACTCACCAATGCCATGCCTT
*
83835562 GGCATGGCCTTACATG
65 GGCATGGTCTTACATG
83835578 ATATCCTTAT
Statistics
Matches: 169, Mismatches: 19, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
108 137 0.81
109 32 0.19
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAAGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
Found at i:83835799 original size:45 final size:45
Alignment explanation
Indices: 83835739--83835852 Score: 210
Period size: 45 Copynumber: 2.5 Consensus size: 45
83835729 ATCAATTCCG
*
83835739 ATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCTTACCA
1 ATGCCATGTCTTGACATGGTCTTACACGAGATCCTTGCCTTACCA
*
83835784 ATGCCATGTCTTGACATGGTCTTACATGAGATCCTTGCCTTACCA
1 ATGCCATGTCTTGACATGGTCTTACACGAGATCCTTGCCTTACCA
83835829 ATGCCATGTCTTGACATGGTCTTA
1 ATGCCATGTCTTGACATGGTCTTA
83835853 AATGGTATCC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.33
Consensus pattern (45 bp):
ATGCCATGTCTTGACATGGTCTTACACGAGATCCTTGCCTTACCA
Found at i:83835819 original size:92 final size:91
Alignment explanation
Indices: 83835657--83835852 Score: 227
Period size: 92 Copynumber: 2.1 Consensus size: 91
83835647 CATGTTCCAA
* * * **
83835657 ACATGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGAA
1 ACATGGTCTTACACGGGATCCTTGCCTTA--GCCAATGCCACATCTTGACATGGTCTTACATGAA
* *
83835722 GTCCTTAATCAATT-CCGATGCCATGTCTTG
64 GTCCTT--GC-ATTACCAATGCCATGTCTTG
**
83835752 ACATGGTCTTACACGGGATCCTTGCCTTA-CCAATGCCATGTCTTGACATGGTCTTACATG-AGA
1 ACATGGTCTTACACGGGATCCTTGCCTTAGCCAATGCCACATCTTGACATGGTCTTACATGAAG-
*
83835815 TCCTTGCCTTACCAATGCCATGTCTTG
65 TCCTTGCATTACCAATGCCATGTCTTG
83835842 ACATGGTCTTA
1 ACATGGTCTTA
83835853 AATGGTATCC
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
89 2 0.02
90 27 0.30
91 2 0.02
92 32 0.36
95 26 0.29
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (91 bp):
ACATGGTCTTACACGGGATCCTTGCCTTAGCCAATGCCACATCTTGACATGGTCTTACATGAAGT
CCTTGCATTACCAATGCCATGTCTTG
Found at i:83835863 original size:45 final size:45
Alignment explanation
Indices: 83835543--83835864 Score: 263
Period size: 47 Copynumber: 7.0 Consensus size: 45
83835533 CCTTATAGAA
* * * * * * **
83835543 CTTATCAATTCCATGCCTTGGCATGGCCTTACATGATATCCTTAT
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGC
*** * *
83835588 CTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTATCATTGT
1 CTTACC-AATGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGC
*** *
83835635 CTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTATCCTTGT
1 CTTACC-AATGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGC
** ** * *
83835682 CTTAGTGCCAATGCCACATCTTGATGTGGTCTTACAT-GAAGTCCTTAATC
1 CTTA---CCAATGCCATGTCTTGACATGGTCTTACATGGTA-TCCTT--GC
* * * *
83835732 AATT-CCGATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGC
1 -CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGC
83835777 CTTACCAATGCCATGTCTTGACATGGTCTTACATGAG-ATCCTTGC
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATG-GTATCCTTGC
*
83835822 CTTACCAATGCCATGTCTTGACATGGTCTTAAATGGTATCCTT
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
83835865 AACCGTCAAT
Statistics
Matches: 229, Mismatches: 35, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
44 3 0.01
45 83 0.36
46 9 0.04
47 102 0.45
48 21 0.09
49 7 0.03
50 2 0.01
51 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (45 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGC
Found at i:83840417 original size:18 final size:19
Alignment explanation
Indices: 83840394--83840432 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
83840384 CTATAATTAC
83840394 TCTATTACACT-GATTTTT
1 TCTATTACACTCGATTTTT
* *
83840412 TCTATTCCACTCTATTTTT
1 TCTATTACACTCGATTTTT
83840431 TC
1 TC
83840433 AAAATTCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.18, C:0.23, G:0.03, T:0.56
Consensus pattern (19 bp):
TCTATTACACTCGATTTTT
Found at i:83846241 original size:27 final size:27
Alignment explanation
Indices: 83846202--83846282 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
83846192 AGCATGGCTG
* *
83846202 CCAGAA-CTGATATTGTGACAGAGTCA
1 CCAGAATCAGATATTGTGACAGAGCCA
*
83846228 CCAG-ATGCAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATATTGTGACAGAGCCA
* * *
83846255 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATATTGTGACAGAGCCA
83846282 C
1 C
83846283 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 40 0.85
28 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGACAGAGCCA
Found at i:83846555 original size:98 final size:98
Alignment explanation
Indices: 83846304--83846542 Score: 363
Period size: 98 Copynumber: 2.4 Consensus size: 98
83846294 CGTGGCACAA
* * * * *
83846304 AGCCATCGATAACGGGTCTATAATCGGAATGAAG-CTCACAATGTCGATACGAAGCCCACAATAA
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCT-ACAATATCGATACAAAGCCCACAATAA
* *
83846368 CGGTACAGAGCCTTCGGTAACAGGATCGGCACTC
65 CAGCACAGAGCCTTCGGTAACAGGATCGGCACTC
* *
83846402 AGCCATTGATAACGGGTCTATAATCGGCACGAACCCTACAATATCGATACAAAGCCCACACTAAC
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACAAAGCCCACAATAAC
* *
83846467 AGCACATAGCCTTCGGTAACATGATCGGCACTC
66 AGCACAGAGCCTTCGGTAACAGGATCGGCACTC
83846500 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATA
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATA
83846543 ATGGCACAAA
Statistics
Matches: 128, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
98 126 0.98
99 2 0.02
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (98 bp):
AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACAAAGCCCACAATAAC
AGCACAGAGCCTTCGGTAACAGGATCGGCACTC
Found at i:83846655 original size:26 final size:27
Alignment explanation
Indices: 83846621--83846675 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
83846611 GTCACTTGGT
83846621 ACAGATA-TTGTGGCAGAGCCACCAGA
1 ACAGATATTTGTGGCAGAGCCACCAGA
*
83846647 ACAGATATTTGTGGCATAGCCACCAGA
1 ACAGATATTTGTGGCAGAGCCACCAGA
83846674 AC
1 AC
83846676 GCTTCATCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGAGCCACCAGA
Found at i:83846947 original size:27 final size:27
Alignment explanation
Indices: 83846903--83847383 Score: 530
Period size: 27 Copynumber: 18.1 Consensus size: 27
83846893 TAAAATGGTA
* * *
83846903 AATT-TACCCCACAAGGGTATCTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * **
83846929 AATTCTATCCTACGGGGGTATTTCAAT
1 AATTCTACCCTACAGGGGTATTTCGGT
* **
83846956 AATTCTACCCTATAGGGGTATTTTAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* **
83846983 AATTCTAGCCTACAGGGGTATTTTAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * * *
83847010 ATTTTTACCCTACAAGGGTATTTTGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
83847037 AATTCTACCCTATAGGGGTA--TC---
1 AATTCTACCCTACAGGGGTATTTCGGT
* *
83847059 ---TCTACCCTACAAGGGTATTTCGAT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
83847083 AATTCTACCCTACAAGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* **
83847110 AATTCTACCTTACAGGGGTATTTTAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
83847137 AATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* *
83847164 ATTTCTACCCTACAAGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* *
83847191 AATTCTACCCTATAGGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
** *
83847218 AATTCTACCCTATTGGGGTATTTCGAT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * *
83847245 AATTCTACCTTACAAGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
83847272 AATTCTACCCTACAGGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * *
83847299 AATTCTAACCTACAGGGCTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
83847326 AATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * *
83847353 ATTTCTACCCTACAAGGGTATTTCGAT
1 AATTCTACCCTACAGGGGTATTTCGGT
83847380 AATT
1 AATT
83847384 TTACAAATCG
Statistics
Matches: 386, Mismatches: 60, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
19 15 0.04
21 2 0.01
25 1 0.00
26 4 0.01
27 364 0.94
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCGGT
Found at i:83847074 original size:19 final size:19
Alignment explanation
Indices: 83847040--83847076 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
83847030 TTTTGGTAAT
* *
83847040 TCTACCCTATAGGGGTATC
1 TCTACCCTACAAGGGTATC
83847059 TCTACCCTACAAGGGTAT
1 TCTACCCTACAAGGGTAT
83847077 TTCGATAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (19 bp):
TCTACCCTACAAGGGTATC
Found at i:83847397 original size:27 final size:28
Alignment explanation
Indices: 83847367--83847706 Score: 313
Period size: 27 Copynumber: 12.7 Consensus size: 28
83847357 CTACCCTACA
83847367 AGGGTATTTCGA-TAATTTTACAAATCG
1 AGGGTATTTCGAGTAATTTTACAAATCG
* * **
83847394 AGGGTATTT-TAGTAATTTTGCAAATTT
1 AGGGTATTTCGAGTAATTTTACAAATCG
* **
83847421 AGGGTATTT-TAGTAATTTTGTAAA-CTG
1 AGGGTATTTCGAGTAATTTTACAAATC-G
*
83847448 AGGGTATTTCG-GTAATTTTACAAATTG
1 AGGGTATTTCGAGTAATTTTACAAATCG
* *
83847475 AAGGTATTTC-AGTAATTTTACAAATCA
1 AGGGTATTTCGAGTAATTTTACAAATCG
*
83847502 AGGGTATTTC-AGTAATTTTGCAAA-CAG
1 AGGGTATTTCGAGTAATTTTACAAATC-G
83847529 AGGGTATTTCGA-TAATTTTACAAATCG
1 AGGGTATTTCGAGTAATTTTACAAATCG
83847556 AGGGTATTTC-A-TAATTTTAC-AATCG
1 AGGGTATTTCGAGTAATTTTACAAATCG
*** * *
83847581 ACAATATTTC-AGTAATTTTATAAACCG
1 AGGGTATTTCGAGTAATTTTACAAATCG
* *
83847608 GGGGTACTTT-G-GTAATTTTACAAGTCG
1 AGGGTA-TTTCGAGTAATTTTACAAATCG
* * *
83847635 AGGGTA-TTCCAGTAATTTTGCAAATCA
1 AGGGTATTTCGAGTAATTTTACAAATCG
*
83847662 AGGGTATTT-TAGTAATTTTACAAA-CTG
1 AGGGTATTTCGAGTAATTTTACAAATC-G
83847689 AGGGTATTTCG-GTAATTT
1 AGGGTATTTCGAGTAATTT
83847707 GGTAAACTAA
Statistics
Matches: 257, Mismatches: 39, Indels: 34
0.78 0.12 0.10
Matches are distributed among these distances:
25 15 0.06
26 21 0.08
27 214 0.83
28 7 0.03
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (28 bp):
AGGGTATTTCGAGTAATTTTACAAATCG
Found at i:83847399 original size:54 final size:53
Alignment explanation
Indices: 83847070--83847565 Score: 276
Period size: 54 Copynumber: 9.2 Consensus size: 53
83847060 CTACCCTACA
* * * **
83847070 AGGGTATTTCGATAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTAC-
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACAAT-CG
** * * ** *
83847123 AGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGT-ATTTCTACCCTACA
1 A-GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTT-TACAAT-CG
* * * * *
83847178 AGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTATTG
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTA--CAATCG
* * * **
83847233 -GGGTATTTCGATAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTAC-
1 AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACAAT-CG
* * * **
83847285 AGGGGTATTTCAGTAATTCTAACCTAC-AGGGCTATTTCAGTAATTCTACCCTAC-
1 A-GGGTATTTCGGTAATTCTACCCTACAAGGG-TATTTCAGTAATTTTACAAT-CG
*
83847339 AGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-GATAATTTTACAAATCG
1 A-GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAG-TAATTTTAC-AATCG
** ** ** ** * ** *
83847394 AGGGTATTTTAGTAATT-TTGCAAATTTAGGGTATTTTAGTAATTTTGTAAACTG
1 AGGGTATTTCGGTAATTCTACCCTA-CAAGGGTATTTCAGTAATTTTACAATC-G
* ** ** *
83847448 AGGGTATTTCGGTAATTTTACAAATTGAA-GGTATTTCAGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTCTAC-CCTACAAGGGTATTTCAGTAATTTTAC-AATCG
* ** **
83847502 AGGGTATTTCAGTAATT-TTGCAAACAGAGGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTCTACCCTACA-AGGGTATTTCAG-TAATTTTAC-AATCG
83847556 AGGGTATTTC
1 AGGGTATTTC
83847566 ATAATTTTAC
Statistics
Matches: 353, Mismatches: 67, Indels: 45
0.76 0.14 0.10
Matches are distributed among these distances:
52 4 0.01
53 18 0.05
54 312 0.88
55 16 0.05
56 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTTTACAATCG
Found at i:83847402 original size:81 final size:82
Alignment explanation
Indices: 83847070--83847571 Score: 358
Period size: 81 Copynumber: 6.2 Consensus size: 82
83847060 CTACCCTACA
* * *
83847070 AGGGTATTTC-GATAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTT-
1 AGGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* **
83847133 TAGTAATTCTAC-CCTAC-
65 GAGTAATTCTACAAAT-CG
* * * * *
83847150 AGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
1 A-GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
** *
83847215 -AGTAATTCTACCCTATTG
65 GAGTAATTCTA-CAAATCG
* *
83847233 -GGGTATTTC-GATAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
1 AGGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
**
83847296 -AGTAATTCTA-ACCTAC-
65 GAGTAATTCTACAAAT-CG
* * *
83847312 AGGGCTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 AGGG-TATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
*
83847377 GA-TAATTTTACAAATCG
65 GAGTAATTCTACAAATCG
* ** ** ** * * ** *
83847394 AGGGTATTTTAGTAATT-TTGCAAATTTAGGGTATTTTAGTAATTTTGTAAACT--GAGGGTATT
1 AGGGTATTTCAGTAATTCTACCCTA-CAAGGGTATTTCAGTAA--TTCTACCCTACAAGGGTATT
* *
83847456 TCG-GTAATTTTACAAATTG
63 TCGAGTAATTCTACAAATCG
* * ** ** **
83847475 AAGGTATTTCAGTAATTTTA-CAAATCAAGGGTATTTCAGTAATT-TTGCAAACAGAGGGTATTT
1 AGGGTATTTCAGTAATTCTACCCTA-CAAGGGTATTTCAGTAATTCTACCCTACA-AGGGTATTT
*
83847538 CGA-TAATTTTACAAATCG
64 CGAGTAATTCTACAAATCG
83847556 AGGGTATTTCA-TAATT
1 AGGGTATTTCAGTAATT
83847572 TTACAATCGA
Statistics
Matches: 347, Mismatches: 52, Indels: 46
0.78 0.12 0.10
Matches are distributed among these distances:
78 1 0.00
79 3 0.01
80 13 0.04
81 312 0.90
82 11 0.03
83 7 0.02
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (82 bp):
AGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCG
AGTAATTCTACAAATCG
Found at i:83847703 original size:81 final size:81
Alignment explanation
Indices: 83847367--83847706 Score: 434
Period size: 81 Copynumber: 4.2 Consensus size: 81
83847357 CTACCCTACA
* * * ** *
83847367 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAATTTAGGGTATTTTA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCA
**
83847432 GTAATTTTGTAAACTG
66 GTAATTTTACAAACTG
* *
83847448 AGGGTATTTCGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCA
* *
83847513 GTAATTTTGCAAACAG
66 GTAATTTTACAAACTG
* * ***
83847529 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCA-TAATTTTAC-AATCGACAATATTTCA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCA
* *
83847592 GTAATTTTATAAACCG
66 GTAATTTTACAAACTG
* * * * *
83847608 GGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTCCAGTAATTTTGCAAATCAAGGGTATTTT
1 AGGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTC
83847672 AGTAATTTTACAAACTG
65 AGTAATTTTACAAACTG
83847689 AGGGTATTTCGGTAATTT
1 AGGGTATTTCGGTAATTT
83847707 GGTAAACTAA
Statistics
Matches: 222, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
79 55 0.25
80 23 0.10
81 144 0.65
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCA
GTAATTTTACAAACTG
Found at i:83849878 original size:27 final size:27
Alignment explanation
Indices: 83849848--83849904 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
83849838 GTGACATTGT
* * *
83849848 CACCAG-ATACAGATATTGTGTCAGAGC
1 CACCAGAAT-CAGATAATGTGGCAAAGC
83849875 CACCAGAATCAGATAATGTGGCAAAGC
1 CACCAGAATCAGATAATGTGGCAAAGC
83849902 CAC
1 CAC
83849905 TTAACATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.18
Consensus pattern (27 bp):
CACCAGAATCAGATAATGTGGCAAAGC
Found at i:83850059 original size:32 final size:32
Alignment explanation
Indices: 83850018--83850080 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
83850008 AACATGATCG
83850018 GCACTCAACCATTGATAACGAGTCTATAATCA
1 GCACTCAACCATTGATAACGAGTCTATAATCA
83850050 GCACTCAACCATTGATAACGAGTCTATAATC
1 GCACTCAACCATTGATAACGAGTCTATAATC
83850081 GGCATGAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.25
Consensus pattern (32 bp):
GCACTCAACCATTGATAACGAGTCTATAATCA
Found at i:83850199 original size:27 final size:27
Alignment explanation
Indices: 83850149--83850230 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
83850139 TCGATCGGTC
* *
83850149 AACAGATATTGTGACAAAGTCACCAGA
1 AACAGATATTGTGGCAAAGCCACCAGA
* *
83850176 TACAGATATTGTGGCAGAGCCACCA-A
1 AACAGATATTGTGGCAAAGCCACCAGA
*
83850202 AATAGATATTTGTGGCATAA-CCACCAGA
1 AACAGATA-TTGTGGCA-AAGCCACCAGA
83850230 A
1 A
83850231 CGCTTCCTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.16
27 35 0.78
28 3 0.07
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.21
Consensus pattern (27 bp):
AACAGATATTGTGGCAAAGCCACCAGA
Found at i:83850513 original size:27 final size:27
Alignment explanation
Indices: 83850455--83851162 Score: 818
Period size: 27 Copynumber: 25.9 Consensus size: 27
83850445 GGTTAAAATG
* * * *
83850455 GTAATTTTAGCCC-ACAAGGGTATCTCG
1 GTAATTCTA-CCCTACAGGGGTATTTCA
83850482 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
83850509 ATAATTCTACCCTACAGAGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
83850536 GAAATTCTATCTTACAGGGGTATTTTGGTATTTCA
1 GTAATTCTACCCTACA--GG------GGTATTTCA
* *
83850571 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
83850598 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
83850625 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
83850652 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
83850679 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
83850706 GTAATTCTACCCTAGAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
83850732 GATATTTCTACCCTACAAGGGAATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
83850760 GTAATTCTACCCTATAGGGGAATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
83850787 GTAATTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
** *
83850813 GATAATTCTACCCTACAAAGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
83850841 GTAATTCTACCCTATAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
83850867 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
**
83850895 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
83850922 GCATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
83850949 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
83850976 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
83851002 GATAATTCTACCCTACAGGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
83851030 GTAATTCTACCCTACAGGAGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
83851056 GATAATTCTACCCTATAGGAGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
83851084 GTAATTCTACCCTACAGGGCTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
83851111 GTAATTCTACCCTACAAGGGTATTT-T
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
83851137 GATATTTCTACCCTACAAGGGTATTT
1 G-TAATTCTACCCTACAGGGGTATTT
83851163 TGGTAATTTT
Statistics
Matches: 594, Mismatches: 67, Indels: 40
0.85 0.10 0.06
Matches are distributed among these distances:
26 9 0.02
27 557 0.94
28 5 0.01
29 1 0.00
33 1 0.00
35 21 0.04
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:83850577 original size:35 final size:35
Alignment explanation
Indices: 83850527--83850596 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
83850517 ACCCTACAGA
* * * *
83850527 GGTATTTTAGAAATTCTATCTTACAGGGGTATTTT
1 GGTATTTCAGAAATTCTACCCTACAAGGGTATTTT
*
83850562 GGTATTTCAGTAATTCTACCCTACAAGGGTATTTT
1 GGTATTTCAGAAATTCTACCCTACAAGGGTATTTT
83850597 AGTAATTCTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.43
Consensus pattern (35 bp):
GGTATTTCAGAAATTCTACCCTACAAGGGTATTTT
Found at i:83851184 original size:27 final size:27
Alignment explanation
Indices: 83851154--83851628 Score: 432
Period size: 27 Copynumber: 17.7 Consensus size: 27
83851144 CTACCCTACA
**
83851154 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
83851181 AGGGTATTTCAGTAATTTTAC-AATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
83851207 ACGGTATTTCTGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
83851234 AGGGTACTTT-GGAAATTTTACAAGTCA
1 AGGGTA-TTTCAGTAATTTTACAAATCG
** *
83851261 AGGGTATTTCAGTAATTTTGTAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
83851288 AAGGTATTTCAGTAATTTTGC-AATCTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
83851315 AGGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
*
83851342 AGGGTATTTCAGCAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
83851368 ATGGTATTTCGGTAATTTTATAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* * * * *
83851395 GGGGTACTTCGGTAATTTTGCAAGTCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
83851422 AGGGTATTTTAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
83851449 AGGGTATTTTAGTAATTTTGA-AAA-CTG
1 AGGGTATTTCAGTAATTTT-ACAAATC-G
*
83851476 AAGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* * *
83851503 AGGGTATTTTAGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
83851530 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* * *
83851557 AGGATATTTCAGTAATTTTGCAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
83851584 AGGGTATTTCAATAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
*
83851611 AGGGTATTTCGGTAATTT
1 AGGGTATTTCAGTAATTT
83851629 GGTAAACTAA
Statistics
Matches: 363, Mismatches: 66, Indels: 38
0.78 0.14 0.08
Matches are distributed among these distances:
26 58 0.16
27 290 0.80
28 15 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:83851321 original size:161 final size:161
Alignment explanation
Indices: 83851154--83851522 Score: 540
Period size: 161 Copynumber: 2.3 Consensus size: 161
83851144 CTACCCTACA
* * *
83851154 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGGTATTTCTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGGTATTTCGG
* **
83851219 TAATTTTATAAACCGAGGGTACTTTGGAAATTTTACAAGTCAAGGGTATTTCAGTAATTTTGTAA
66 TAATTTTATAAACCGAGGGTACTTCGGAAATTTTACAAGTCAAGGGTATTTCAGTAATTTTACAA
* * *
83851284 ATTGAAGGTATTTCAGTAATTTTGCAATCTG
131 ATCGAAGGTATTTCAGTAATTTTGAAAACTG
* * *
83851315 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGCAATTTTACAATCGATGGTATTTCGG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGGTATTTCGG
* * * * * *
83851380 TAATTTTATAAACTGGGGGTACTTCGGTAATTTTGCAAGTCGAGGGTATTTTAGTAATTTTACAA
66 TAATTTTATAAACCGAGGGTACTTCGGAAATTTTACAAGTCAAGGGTATTTCAGTAATTTTACAA
* *
83851445 ATCGAGGGTATTTTAGTAATTTTGAAAACTG
131 ATCGAAGGTATTTCAGTAATTTTGAAAACTG
* *
83851476 AAGGTATTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTTA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
83851523 TAAACCGGGG
Statistics
Matches: 185, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
161 185 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (161 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGGTATTTCGG
TAATTTTATAAACCGAGGGTACTTCGGAAATTTTACAAGTCAAGGGTATTTCAGTAATTTTACAA
ATCGAAGGTATTTCAGTAATTTTGAAAACTG
Found at i:83857506 original size:46 final size:44
Alignment explanation
Indices: 83857453--83857628 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 44
83857443 TATTTGGGCA
83857453 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
*** * *
83857499 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
*
83857546 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * *
83857592 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83857629 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:83857608 original size:93 final size:93
Alignment explanation
Indices: 83857449--83857620 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
83857439 AGGATATTTG
* *
83857449 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
83857514 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
83857542 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
83857607 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
83857621 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:83864079 original size:193 final size:193
Alignment explanation
Indices: 83863750--83864137 Score: 677
Period size: 193 Copynumber: 2.0 Consensus size: 193
83863740 TGATATGAAT
*
83863750 AACTTATAACTAGCTCATTTAATAAGCTTAGTATATGGTTTGATTTGCATATCTGGTTAGTCTTG
1 AACTTATAACTAGCTCATTTAATAAGCTTAGTATATGGTTTGATTTGCATATCTAGTTAGTCTTG
83863815 TGATTCAATTTTGTAATGGAGTAAATGATGAATTTATAACCGATTGTATAATGGTTATTTTGATT
66 TGATTCAATTTTGTAATGGAGTAAATGATGAATTTATAACCGATTGTATAATGGTTATTTTGATT
* ** *
83863880 AAATTGTATTGGTTAAGTACACAAATATTTTATGTTTGAATGAGTAAGTTTTATGTATGGTTC
131 AAATTGTATTGGTTAAGTACACAAATAGTGCATGTTTGAATGAGTAAGTTTAATGTATGGTTC
* *
83863943 AACTTATAACTAGCTCATTTAATAATCTTGGTATATGGTTTGATTTGCATATCTAGTTAGTCTTG
1 AACTTATAACTAGCTCATTTAATAAGCTTAGTATATGGTTTGATTTGCATATCTAGTTAGTCTTG
*
83864008 TGATTCAATTTTGTAATGGAGTAAATGATGAATTTATAGCCGATTGTATAATGGTTATTTTGATT
66 TGATTCAATTTTGTAATGGAGTAAATGATGAATTTATAACCGATTGTATAATGGTTATTTTGATT
** *
83864073 AAATTGTATTGGTTAAGTACGTAGATAGTGCATGTTTGAATGAGTAAGTTTAATGTATGGTTC
131 AAATTGTATTGGTTAAGTACACAAATAGTGCATGTTTGAATGAGTAAGTTTAATGTATGGTTC
83864136 AA
1 AA
83864138 AACGAATGTG
Statistics
Matches: 184, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
193 184 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.43
Consensus pattern (193 bp):
AACTTATAACTAGCTCATTTAATAAGCTTAGTATATGGTTTGATTTGCATATCTAGTTAGTCTTG
TGATTCAATTTTGTAATGGAGTAAATGATGAATTTATAACCGATTGTATAATGGTTATTTTGATT
AAATTGTATTGGTTAAGTACACAAATAGTGCATGTTTGAATGAGTAAGTTTAATGTATGGTTC
Found at i:83869280 original size:40 final size:42
Alignment explanation
Indices: 83869225--83869387 Score: 122
Period size: 41 Copynumber: 4.0 Consensus size: 42
83869215 GTTTGACGAT
83869225 GATTT-GAGATAGCTTCGGCTAT-ATATGGCACTTAGTGTGC
1 GATTTAGAGATAGCTTCGGCTATGATATGGCACTTAGTGTGC
** * *
83869265 GATTTAGA-ATAGCTTCGATTAT-AAATGGCACTTAGTATGC
1 GATTTAGAGATAGCTTCGGCTATGATATGGCACTTAGTGTGC
**** * * *
83869305 GAGACCGAGTTAGCTTCGGCTATGA-AAGGCAATTAGTGTGC
1 GATTTAGAGATAGCTTCGGCTATGATATGGCACTTAGTGTGC
* * * * * *
83869346 GAGATTA-AAATAGCTTAGGCTATGTTTTGGCACTTGGTGTGC
1 GA-TTTAGAGATAGCTTCGGCTATGATATGGCACTTAGTGTGC
83869388 AAGAATTTGA
Statistics
Matches: 92, Mismatches: 26, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
40 37 0.40
41 42 0.46
42 13 0.14
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (42 bp):
GATTTAGAGATAGCTTCGGCTATGATATGGCACTTAGTGTGC
Found at i:83875609 original size:48 final size:48
Alignment explanation
Indices: 83875538--83875643 Score: 158
Period size: 48 Copynumber: 2.2 Consensus size: 48
83875528 AAAGTGTTGA
* *
83875538 CCAAATCAATAGAGCTCAAACCCGAAGTGCTAATATCATGGGCTGAAG
1 CCAAATCAATAAAGCTCAAACCCGAAGTGCTAATATCATGGCCTGAAG
***
83875586 CCAAATCAATAAAGCTTGCACCCGAAGTGCTAATATCATGGCCTGAAG
1 CCAAATCAATAAAGCTCAAACCCGAAGTGCTAATATCATGGCCTGAAG
*
83875634 GCAAATCAAT
1 CCAAATCAAT
83875644 GAATTTCCTA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.20
Consensus pattern (48 bp):
CCAAATCAATAAAGCTCAAACCCGAAGTGCTAATATCATGGCCTGAAG
Found at i:83878025 original size:93 final size:93
Alignment explanation
Indices: 83877912--83878083 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
83877902 CGCCCATAAG
* *
83877912 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83877977 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
83878005 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83878070 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
83878084 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83878080 original size:46 final size:46
Alignment explanation
Indices: 83877905--83878080 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
83877895 TGTAACCCGC
* * *
83877905 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
83877951 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
83878001 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
83878044 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
83878081 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83885521 original size:93 final size:93
Alignment explanation
Indices: 83885408--83885579 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
83885398 CGCCCATAAG
* *
83885408 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83885473 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
83885501 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83885566 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
83885580 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83885576 original size:46 final size:46
Alignment explanation
Indices: 83885401--83885576 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
83885391 TGTAACCCGC
* * *
83885401 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
83885447 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
83885497 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
83885540 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
83885577 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83890385 original size:93 final size:93
Alignment explanation
Indices: 83890270--83890441 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
83890260 GCCCATAAGT
* * *
83890270 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGGCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
83890335 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
83890363 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
*
83890428 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
83890442 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:83890437 original size:46 final size:46
Alignment explanation
Indices: 83890262--83890437 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
83890252 TGTAACCCGC
* *
83890262 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
83890308 CCACAAGTGAACTCGGGCTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
83890354 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
83890401 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
83890438 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:83893384 original size:40 final size:40
Alignment explanation
Indices: 83893212--83893377 Score: 237
Period size: 40 Copynumber: 4.2 Consensus size: 40
83893202 AACCCAAGTA
* * * * *
83893212 CCTTCGGAATTTAG-CCGGATAT-AGCAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATG
* * *
83893251 CCTTCGGGACTTAGCCCGGACATAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
83893291 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
83893331 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
83893371 CCTTCGG
1 CCTTCGG
83893378 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 12 0.11
40 101 0.89
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
Done.