Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 264 of 325
Found at i:84211227 original size:37 final size:37
Alignment explanation
Indices: 84211168--84211274 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
84211158 AGCTTAGACG
* *
84211168 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
84211205 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
84211242 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
84211275 TAATATATTT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:84214828 original size:40 final size:40
Alignment explanation
Indices: 84214627--84214821 Score: 284
Period size: 40 Copynumber: 4.9 Consensus size: 40
84214617 ATTCGGATTG
* *
84214627 ATAACCGGGCTAAG-CCCGAATGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
84214666 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
84214706 ATAACCGGGCCAAGTCCCAAAGGCAATTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* **
84214746 ATAACCGGGCTAAGTCCCGAAGGCAATTGTATGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
84214786 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
84214822 AGCTATATCT
Statistics
Matches: 140, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 13 0.09
40 127 0.91
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:84216356 original size:16 final size:16
Alignment explanation
Indices: 84216335--84216369 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
84216325 TTTCCCCCAA
84216335 TCTAATTTCGA-ATTCC
1 TCTAATTTC-ATATTCC
84216351 TCTAATTTCATATTCC
1 TCTAATTTCATATTCC
84216367 TCT
1 TCT
84216370 TTTCTTGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 1 0.06
16 17 0.94
ACGTcount: A:0.23, C:0.26, G:0.03, T:0.49
Consensus pattern (16 bp):
TCTAATTTCATATTCC
Found at i:84232738 original size:10 final size:10
Alignment explanation
Indices: 84232723--84232751 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
84232713 ATTATCACTT
84232723 AAACAATTTC
1 AAACAATTTC
84232733 AAACAATTTC
1 AAACAATTTC
84232743 AAACAATTT
1 AAACAATTT
84232752 AATTCACCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (10 bp):
AAACAATTTC
Found at i:84236338 original size:27 final size:27
Alignment explanation
Indices: 84236281--84236391 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
84236271 AGCATGGCTG
* *
84236281 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
84236307 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
84236334 ACAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
84236361 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
84236388 CCAG
1 CCAG
84236392 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 15 0.20
27 59 0.79
28 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:84237863 original size:24 final size:24
Alignment explanation
Indices: 84237836--84237911 Score: 125
Period size: 24 Copynumber: 3.2 Consensus size: 24
84237826 CTCTAATCAG
84237836 CTCCCTTATCAGCTCCTAAATCCT
1 CTCCCTTATCAGCTCCTAAATCCT
*
84237860 CTCCCTTATTAGCTCCTAAATCCT
1 CTCCCTTATCAGCTCCTAAATCCT
* *
84237884 CTCCCTTATCAGCTCCCAAATCTT
1 CTCCCTTATCAGCTCCTAAATCCT
84237908 CTCC
1 CTCC
84237912 TGACAGCCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.20, C:0.42, G:0.04, T:0.34
Consensus pattern (24 bp):
CTCCCTTATCAGCTCCTAAATCCT
Found at i:84243490 original size:30 final size:29
Alignment explanation
Indices: 84243456--84243519 Score: 119
Period size: 30 Copynumber: 2.2 Consensus size: 29
84243446 ATGAATCGAA
84243456 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
84243486 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
84243515 AGCTT
1 AGCTT
84243520 CAGCTACTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:84253719 original size:39 final size:39
Alignment explanation
Indices: 84253635--84253745 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 39
84253625 AGATACTAAT
** *
84253635 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
84253675 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
84253715 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
84253746 GAGCTATATC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
39 25 0.42
40 35 0.58
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:84261454 original size:46 final size:46
Alignment explanation
Indices: 84261387--84261515 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
84261377 TGTAACCCGC
* * * *
84261387 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
84261433 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
84261479 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84261516 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:84261534 original size:46 final size:45
Alignment explanation
Indices: 84261395--84261534 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
84261385 GCCCATAAGC
* ** * *
84261395 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
84261441 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
84261487 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
84261533 GA
1 GA
84261535 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:84263478 original size:45 final size:45
Alignment explanation
Indices: 84263409--84263495 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
84263399 CATACTTTCA
*
84263409 CACCAGCATTATAGCCTGTTAGGCTCAAAGGCCCGAATAGTATAT
1 CACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATAT
*
84263454 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 CACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
84263496 CTGTACGATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (45 bp):
CACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATAT
Found at i:84264305 original size:25 final size:25
Alignment explanation
Indices: 84264276--84264394 Score: 157
Period size: 25 Copynumber: 4.8 Consensus size: 25
84264266 AACTTATTCA
* *
84264276 GAAATAATAAGGGCAAATTTAACCG
1 GAAATATTAAGAGCAAATTTAACCG
*
84264301 AAAATATTAAGAGCAAATTTAACCG
1 GAAATATTAAGAGCAAATTTAACCG
* * *
84264326 GAATTATTAAGAACAACTTTAACCG
1 GAAATATTAAGAGCAAATTTAACCG
*
84264351 GAATTATTAAGAGCAAATTTAACCG
1 GAAATATTAAGAGCAAATTTAACCG
* *
84264376 GAACTATTAAGAACAAATT
1 GAAATATTAAGAGCAAATT
84264395 AAGAAGCTTA
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 83 1.00
ACGTcount: A:0.48, C:0.13, G:0.14, T:0.25
Consensus pattern (25 bp):
GAAATATTAAGAGCAAATTTAACCG
Found at i:84280186 original size:27 final size:27
Alignment explanation
Indices: 84280156--84280208 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
84280146 CCTCGCTGCA
*
84280156 ATCTGGTGGCCTAGCCACAATATCTGT
1 ATCTGGTGACCTAGCCACAATATCTGT
* * *
84280183 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGACCTAGCCACAATATCTG
84280209 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
ATCTGGTGACCTAGCCACAATATCTGT
Found at i:84280188 original size:67 final size:67
Alignment explanation
Indices: 84280071--84280220 Score: 239
Period size: 67 Copynumber: 2.2 Consensus size: 67
84280061 GAGGAAGCGT
* *
84280071 TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCCTAGCCACATATATCTGTTCTGGTGACTTCGTCACAA
84280136 CA
66 CA
*
84280138 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTAGCCACA-ATATCTGTATCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCCTAGCCACATATATCTGT-TCTGGTGACTTCGTCACA
*
84280202 ATA
65 ACA
*
84280205 TCTGGCAACCTCGCTG
1 TCTGGCAGCCTCGCTG
84280221 TAATTTCTGT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
66 8 0.10
67 69 0.90
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.29
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTAGTGGCCTAGCCACATATATCTGTTCTGGTGACTTCGTCACAA
CA
Found at i:84295938 original size:39 final size:38
Alignment explanation
Indices: 84295860--84296132 Score: 168
Period size: 39 Copynumber: 6.9 Consensus size: 38
84295850 AAATTCAATC
* *
84295860 ACCAACACAAAGCCTACAGGACTTGAAGCCCGGATATAGT
1 ACCAGCACAAAGCCTAC-GGACTT-AAGTCCGGATATAGT
* *
84295900 ACCCGTACAAAGCCTACGGACCTTAAGTCCGGATATAGT
1 ACCAGCACAAAGCCTACGGA-CTTAAGTCCGGATATAGT
* * * *
84295939 ACCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAAT
1 ACCAGCACAAAGCCTACGGA-CTTAAGTCCGGATATAGT
* * ** * * * * *
84295978 TCTAGCATGAAGCCTGCGGGTCTTTAAGCCCGAATATAAT
1 ACCAGCACAAAGCCTAC-GGAC-TTAAGTCCGGATATAGT
* * * * * *
84296018 TCCAGCACGAAGCCTGCGGACCTTAAGTCCAGATACAAT
1 ACCAGCACAAAGCCTACGGA-CTTAAGTCCGGATATAGT
* ** * * * *
84296057 TCCAGCAGGAAGCCTGCGGACCTTAAGTTCGGATACAAT
1 ACCAGCACAAAGCCTACGGA-CTTAAGTCCGGATATAGT
* * *
84296096 TCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATA
1 ACCAGCACAAAGCCTACGGA-CTTAAGTCCGGATATA
84296133 CATCAAATAT
Statistics
Matches: 198, Mismatches: 31, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
39 149 0.75
40 49 0.25
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.20
Consensus pattern (38 bp):
ACCAGCACAAAGCCTACGGACTTAAGTCCGGATATAGT
Found at i:84296015 original size:79 final size:78
Alignment explanation
Indices: 84295909--84296130 Score: 318
Period size: 79 Copynumber: 2.8 Consensus size: 78
84295899 TACCCGTACA
* * * *
84295909 AAGCCTACGGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGCGGATCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
* *
84295974 CAATTCTAGCATG
66 CAATTCCAGCAGG
* * * * *
84295987 AAGCCTGCGGGTCTTTAAGCCCGAATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCAGAT
1 AAGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
84296052 ACAATTCCAGCAGG
65 ACAATTCCAGCAGG
* *
84296066 AAGCCTGCGGACCTTAAGTTCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
84296131 TACATCAAAT
Statistics
Matches: 125, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
78 57 0.46
79 68 0.54
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (78 bp):
AAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
CAATTCCAGCAGG
Found at i:84296019 original size:40 final size:39
Alignment explanation
Indices: 84295921--84296126 Score: 216
Period size: 39 Copynumber: 5.3 Consensus size: 39
84295911 GCCTACGGAC
* * * * *
84295921 CTTAAGTCCGGATATAGTACCAGCACGAAGCCTGCGGAT
1 CTTAAGTCCGAATACAATTCCAGCACGAAGCCTGCGGGT
* * *
84295960 CTTAAGTCCGGATACAATTCTAGCATGAAGCCTGCGGGT
1 CTTAAGTCCGAATACAATTCCAGCACGAAGCCTGCGGGT
* * **
84295999 CTTTAAGCCCGAATATAATTCCAGCACGAAGCCTGCGGAC
1 C-TTAAGTCCGAATACAATTCCAGCACGAAGCCTGCGGGT
* **
84296039 CTTAAGTCC-AGATACAATTCCAGCAGGAAGCCTGCGGAC
1 CTTAAGTCCGA-ATACAATTCCAGCACGAAGCCTGCGGGT
* * **
84296078 CTTAAGTTCGGATACAATTCCAGCACGAAGCCTGCGGAC
1 CTTAAGTCCGAATACAATTCCAGCACGAAGCCTGCGGGT
84296117 CTTAAGTCCG
1 CTTAAGTCCG
84296127 GATATACATC
Statistics
Matches: 144, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 111 0.77
40 32 0.22
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.21
Consensus pattern (39 bp):
CTTAAGTCCGAATACAATTCCAGCACGAAGCCTGCGGGT
Found at i:84306465 original size:27 final size:27
Alignment explanation
Indices: 84306435--84306487 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
84306425 CCTCGCTGCA
*
84306435 ATCTGGTGGCCTAGCCACAATATCTGT
1 ATCTGGTGACCTAGCCACAATATCTGT
* * *
84306462 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGACCTAGCCACAATATCTG
84306488 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
ATCTGGTGACCTAGCCACAATATCTGT
Found at i:84306467 original size:67 final size:67
Alignment explanation
Indices: 84306350--84306499 Score: 230
Period size: 67 Copynumber: 2.2 Consensus size: 67
84306340 GAGGAAGCGT
* *
84306350 TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTATTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCCTAGCCACATATATCTATTCTGGTGACTTCGTCACAA
84306415 CA
66 CA
* *
84306417 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTAGCCACA-ATATCTGTATCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCCTAGCCACATATATCTAT-TCTGGTGACTTCGTCACA
*
84306481 ATA
65 ACA
*
84306484 TCTGGCAACCTCGCTG
1 TCTGGCAGCCTCGCTG
84306500 TAATTTCTGT
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
66 7 0.09
67 69 0.91
ACGTcount: A:0.20, C:0.30, G:0.21, T:0.29
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTAGTGGCCTAGCCACATATATCTATTCTGGTGACTTCGTCACAA
CA
Found at i:84326583 original size:40 final size:39
Alignment explanation
Indices: 84326532--84326804 Score: 179
Period size: 39 Copynumber: 6.9 Consensus size: 39
84326522 GAATTCAATC
*
84326532 ACCAACACAAAGCCTACAGGA-CTTGAAGCCCGGATATAGT
1 ACCAGCACAAAGCCTAC-GGACCTT-AAGCCCGGATATAGT
* *
84326572 ACCAGTACAAAGCCTACGGACCTTAAGTCCGGATATAGT
1 ACCAGCACAAAGCCTACGGACCTTAAGCCCGGATATAGT
* * * * * *
84326611 ACCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAAT
1 ACCAGCACAAAGCCTACGGACCTTAAGCCCGGATATAGT
* * ** * * * * *
84326650 TCTAGCATGAAGCCTGCGGGTCTTTAAGCCCGAATATAAT
1 ACCAGCACAAAGCCTAC-GGACCTTAAGCCCGGATATAGT
* * * * * * * *
84326690 TCCAGCACGAAGCTTGCGGACCTTAAGTCCAGATACAAT
1 ACCAGCACAAAGCCTACGGACCTTAAGCCCGGATATAGT
* ** * * * *
84326729 TCCAGCATGAAGCCTGCGGACCTTAAGTCCGGATACAAT
1 ACCAGCACAAAGCCTACGGACCTTAAGCCCGGATATAGT
* * * *
84326768 TCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATA
1 ACCAGCACAAAGCCTACGGACCTTAAGCCCGGATATA
84326805 CATCAAATAT
Statistics
Matches: 199, Mismatches: 32, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
39 151 0.76
40 48 0.24
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (39 bp):
ACCAGCACAAAGCCTACGGACCTTAAGCCCGGATATAGT
Found at i:84326610 original size:39 final size:39
Alignment explanation
Indices: 84326561--84326804 Score: 299
Period size: 39 Copynumber: 6.2 Consensus size: 39
84326551 GACTTGAAGC
* * * * *
84326561 CCGGATATAGTACCAGTACAAAGCCTACGGACCTTAAGT
1 CCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGT
* * *
84326600 CCGGATATAGTACCAGCACGAAGCCTGCGGATCTTAAGT
1 CCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGT
* * * * * *
84326639 CCGGATACAATTCTAGCATGAAGCCTGCGGGTCTTTAAGC
1 CCGGATATAATTCCAGCACGAAGCCTGC-GGACCTTAAGT
* *
84326679 CCGAATATAATTCCAGCACGAAGCTTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGT
* * *
84326718 CCAGATACAATTCCAGCATGAAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGT
*
84326757 CCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGT
84326796 CCGGATATA
1 CCGGATATA
84326805 CATCAAATAT
Statistics
Matches: 175, Mismatches: 29, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 145 0.83
40 30 0.17
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGT
Found at i:84326687 original size:79 final size:78
Alignment explanation
Indices: 84326581--84326802 Score: 327
Period size: 79 Copynumber: 2.8 Consensus size: 78
84326571 TACCAGTACA
* * * *
84326581 AAGCCTACGGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTGCGGATCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
*
84326646 CAATTCTAGCATG
66 CAATTCCAGCATG
* * * * * *
84326659 AAGCCTGCGGGTCTTTAAGCCCGAATATAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCAGAT
1 AAGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
84326724 ACAATTCCAGCATG
65 ACAATTCCAGCATG
*
84326738 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
84326803 TACATCAAAT
Statistics
Matches: 125, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
78 57 0.46
79 68 0.54
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (78 bp):
AAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
CAATTCCAGCATG
Found at i:84330816 original size:43 final size:42
Alignment explanation
Indices: 84330768--84330924 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
84330758 ATCTTGTACA
* *
84330768 ATGCCAACGTCCCAAATGTGGTCTTACATGTAATCAAATATAG
1 ATGCCAACGTCCCAAA-GTGGTCTTACACGTAATCAAATATCG
* *
84330811 ATGCC-ACTATCCCAGACAG-GGTCTTACACGAAATCAAATA-CG
1 ATGCCAAC-GTCCCA-A-AGTGGTCTTACACGTAATCAAATATCG
* * * * * *
84330853 ATGCTAACGTCCTAGACTGGTCTTACACATAAATCATAA-GTCG
1 ATGCCAACGTCCCAAAGTGGTCTTACACGT-AATCA-AATATCG
*
84330896 ATGCCAACGTCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCA-AAGTGGTCTTACAC
84330925 TATAACACAT
Statistics
Matches: 88, Mismatches: 17, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
40 1 0.01
41 10 0.11
42 16 0.18
43 47 0.53
44 13 0.15
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAAAGTGGTCTTACACGTAATCAAATATCG
Found at i:84338272 original size:42 final size:42
Alignment explanation
Indices: 84338207--84338405 Score: 226
Period size: 42 Copynumber: 4.7 Consensus size: 42
84338197 AGCTCGTACA
*
84338207 ATGCCAACGTCCCAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAACATCCCAGA-AGTGGTCTTACACGAAATCAAATACG
*
84338249 ATGCCAACATCCCAGAAGTGGTCTTACACGTAATCAAATATCG
1 ATGCCAACATCCCAGAAGTGGTCTTACACGAAATCAAATA-CG
* *
84338292 ATGCC-ACTATCCCAAATAG-GGTTTTACACGAAATCAAATACG
1 ATGCCAAC-ATCCCAGA-AGTGGTCTTACACGAAATCAAATACG
* *
84338334 ATGCCAACATCCCAGACGTGGTCTTACACGTAAATCATAAGT-TG
1 ATGCCAACATCCCAGAAGTGGTCTTACACG-AAATCA-AA-TACG
* * *
84338378 ATGCCAACGTCCTAGATGTGGTCTTACA
1 ATGCCAACATCCCAGAAGTGGTCTTACA
84338406 TGATAACACA
Statistics
Matches: 136, Mismatches: 12, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
41 3 0.02
42 61 0.45
43 41 0.30
44 30 0.22
45 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAACATCCCAGAAGTGGTCTTACACGAAATCAAATACG
Found at i:84342991 original size:54 final size:54
Alignment explanation
Indices: 84342798--84343002 Score: 207
Period size: 55 Copynumber: 3.8 Consensus size: 54
84342788 TTTCCTTTTT
* * * * * * * * *
84342798 GAACTTACCATTGACATGTCATGGCATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGTCTTGGCATGGTCTTACATGATATCTTTTCCATATA
* * ** *
84342851 GAACTCACCAATGCGATGCCTTGGCATGGTCTTACATGGGACCTTTT-CATTATA
1 GAACTCACCAATGCCATGTCTTGGCATGGTCTTACATGATATCTTTTCCA-TATA
* * *
84342905 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCTTTTCCATATA
1 G-AACTCACCAATGCCATGTCTTGGCATGGTCTTACATGATATCTTTTCCATATA
* *
84342960 GAACTTATCAATGCCATGTCTTGGCATGGTCTTACATGATATC
1 GAACTCACCAATGCCATGTCTTGGCATGGTCTTACATGATATC
84343003 CTTATCTTAC
Statistics
Matches: 125, Mismatches: 23, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
52 1 0.01
53 39 0.31
54 40 0.32
55 43 0.34
56 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGTCTTGGCATGGTCTTACATGATATCTTTTCCATATA
Found at i:84343040 original size:47 final size:47
Alignment explanation
Indices: 84342984--84343105 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
84342974 CATGTCTTGG
* *
84342984 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
84343031 CATGGTCTTACATGGTATCCTTGTCTTATCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
84343078 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
84343106 GTGCCAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:84343195 original size:47 final size:48
Alignment explanation
Indices: 84343077--84343196 Score: 120
Period size: 47 Copynumber: 2.5 Consensus size: 48
84343067 CATGTTCCAA
* *
84343077 ACATGGTCTTACATGGTATCCTT-GTCTTAGTGCCAATGCCACATCTTG
1 ACATGGTCTTACATGGTATCCTTAATC-TAATGCCAATGCCACATCTTG
** * * ** *
84343125 ATGTGGTCTTACATGG-AGACCTTAATC-AATGCCGATGCCATGTGTTG
1 ACATGGTCTTACATGGTA-TCCTTAATCTAATGCCAATGCCACATCTTG
84343172 ACATGGTCTTACATGGTATCCTTAA
1 ACATGGTCTTACATGGTATCCTTAA
84343197 CCGTCAATTC
Statistics
Matches: 57, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
47 36 0.63
48 19 0.33
49 2 0.04
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (48 bp):
ACATGGTCTTACATGGTATCCTTAATCTAATGCCAATGCCACATCTTG
Found at i:84347532 original size:68 final size:66
Alignment explanation
Indices: 84347460--84347635 Score: 187
Period size: 67 Copynumber: 2.6 Consensus size: 66
84347450 CATCATGTGT
* * *
84347460 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATTCTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGGGTGATTCCAGTGAAGGACACCA
84347523 TGTAG
62 TGTAG
** * *
84347528 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATTCCA-GTGAAGGACACCATGT
84347593 AG
65 AG
* * * *
84347595 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTG
84347636 GTACTGAGTG
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 25 0.27
65 3 0.03
66 20 0.22
67 32 0.34
68 13 0.14
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATTCCAGTGAAGGACACCATGTA
G
Found at i:84347565 original size:64 final size:64
Alignment explanation
Indices: 84347484--84347667 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
84347474 AGACATTATG
* * *
84347484 ATGTAGCTAGGTCGCATGGGTGATTCTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTTCTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
84347548 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTTCTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
84347613 AA
63 AA
* * * *
84347615 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTTCT-ATGTGTACACCATGTAG-ACAAGAGAGC
84347668 CGAACTATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 26 0.26
66 21 0.21
67 33 0.33
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTTCTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:84354165 original size:34 final size:35
Alignment explanation
Indices: 84354107--84354178 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
84354097 CGTATCCTAG
*
84354107 CTACAGTCTCAGTCTTCTAAAGTTTTCAGT-TTTCC
1 CTACAGTCTCAGTCTTCTAAAG-TTTCAGTATTACC
* * *
84354142 CTACTGTCTTAGT-TTCTACAGTTTCAGTATTACC
1 CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
84354176 CTA
1 CTA
84354179 ACTACAGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 7 0.22
34 14 0.44
35 11 0.34
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
Found at i:84355639 original size:65 final size:65
Alignment explanation
Indices: 84355535--84355665 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
84355525 AGTCCCATGC
*
84355535 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTTAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
84355600 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
84355665 A
1 A
84355666 ACCCTAGGGG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:84355724 original size:27 final size:26
Alignment explanation
Indices: 84355668--84355724 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
84355658 CAACCTTAAC
* * *
84355668 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
84355694 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
84355721 CCTA
1 CCTA
84355725 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:84359089 original size:20 final size:20
Alignment explanation
Indices: 84359043--84359090 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
84359033 AGTAAGCTCG
*
84359043 GTTGAGCTCACACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
*** *
84359063 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
84359083 GTTGAGCT
1 GTTGAGCT
84359091 AGACGGAGCT
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:84362259 original size:54 final size:54
Alignment explanation
Indices: 84362075--84362271 Score: 254
Period size: 55 Copynumber: 3.6 Consensus size: 54
84362065 AAATTACCAT
* * * * *
84362075 TGCCATGTCTTGGCATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTAATCAA
** *
84362128 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTAATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATAG-AACTAATCAA
* * * *
84362183 TGCCATGTCTTGGCATGGTCTTACATGATTTCGTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTAATCAA
84362237 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
84362272 ATCTTGCCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.02
53 35 0.28
54 42 0.34
55 44 0.35
56 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTAATCAA
Found at i:84362305 original size:47 final size:47
Alignment explanation
Indices: 84362250--84362371 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
84362240 CATGCCTTGG
* * * *
84362250 CATGGTCTTACATGATATCCTTATCTTGCCAAATGCCATGTTCCGAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATACCATGTTCCAAA
* *
84362297 CATGGTCTTACATGGTATCCTTGTTTTACCAAATACCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATACCATGTTCCAAA
84362344 CATGGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
84362372 GTTCCAATGC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATACCATGTTCCAAA
Found at i:84362559 original size:44 final size:44
Alignment explanation
Indices: 84362510--84362594 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
84362500 ATCCTTAATC
* *
84362510 GTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCT
1 GTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCT
* * *
84362554 GTCAATTCTTCTTTAATTGCCATGGTACAACCATGGACTTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
84362595 GAGATATCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCT
Found at i:84365572 original size:11 final size:11
Alignment explanation
Indices: 84365552--84365580 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
84365542 ACCCAATTCA
84365552 TTTC-CTCACT
1 TTTCTCTCACT
84365562 TTTCTCTCACT
1 TTTCTCTCACT
84365573 TTTCTCTC
1 TTTCTCTC
84365581 TTCATTACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.07, C:0.38, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTCTCTCACT
Found at i:84367559 original size:87 final size:90
Alignment explanation
Indices: 84367402--84367664 Score: 292
Period size: 90 Copynumber: 3.0 Consensus size: 90
84367392 TATGCTATCT
* * * * *
84367402 CATATCGATGCC-ACTGT-CCTAAACAGGGTCTTACATG-AATCA-A-ATA-CGATGCCCATGTC
1 CATATCGATGCCAAC-GTCCCT-GACGGGGTCTTACATGAAAACACATATATCGATGCCAACGTC
** * *
84367461 CCAGACATGGTCTTACTC-ATAAC-CA
64 CCAGATGTGGTCTTACACAAAAACACA
* *
84367486 CATATCGATTCCAACGTCCC-GACGTGGTCTTACATGAAAACACATATATCGATGCCAACGTCCC
1 CATATCGATGCCAACGTCCCTGACGGGGTCTTACATGAAAACACATATATCGATGCCAACGTCCC
84367550 AGATGTGGTCTTACACAAAAACACA
66 AGATGTGGTCTTACACAAAAACACA
* * *
84367575 TATATCGATGCCAACGTCCCTGACGGGGTCTTACATGAAAACACATATATTGATGCCAACGTCCT
1 CATATCGATGCCAACGTCCCTGACGGGGTCTTACATGAAAACACATATATCGATGCCAACGTCCC
* * *
84367640 AAATGTGGTCGTACACGAAAACACA
66 AGATGTGGTCTTACACAAAAACACA
84367665 TAGCATAATC
Statistics
Matches: 151, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
83 13 0.09
84 17 0.11
85 5 0.03
86 3 0.02
87 26 0.17
88 4 0.03
89 20 0.13
90 63 0.42
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (90 bp):
CATATCGATGCCAACGTCCCTGACGGGGTCTTACATGAAAACACATATATCGATGCCAACGTCCC
AGATGTGGTCTTACACAAAAACACA
Found at i:84367573 original size:45 final size:45
Alignment explanation
Indices: 84367448--84367666 Score: 255
Period size: 45 Copynumber: 4.9 Consensus size: 45
84367438 GAATCAAATA
* * * * * *
84367448 CGATGCCCATGTCCCAGACATGGTCTTACTC-ATAAC-CACATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATAT
* *
84367491 CGATTCCAACGTCCC-GACGTGGTCTTACATGAAAACACATATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATAT
* *
84367535 CGATGCCAACGTCCCAGATGTGGTCTTACACAAAAACACATATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATAT
* * *
84367580 CGATGCCAACGTCCCTGACGGGGTCTTACATGAAAACACATATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATAT
* * * * *
84367625 TGATGCCAACGTCCTAAATGTGGTCGTACACGAAAACACATA
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATA
84367667 GCATAATCCT
Statistics
Matches: 148, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
42 12 0.08
43 16 0.11
44 20 0.14
45 100 0.68
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.23
Consensus pattern (45 bp):
CGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATAT
Found at i:84369351 original size:46 final size:48
Alignment explanation
Indices: 84369207--84369517 Score: 209
Period size: 47 Copynumber: 6.6 Consensus size: 48
84369197 TTTGTGAGCT
* *
84369207 AGTGTAAGA-CATGTGTGGGACAT-GCATCGGCCAT--A-TTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCGAGATAT-A-AGCC
* * * * * * * * * *
84369253 AATGTAAGACCATTTCTGGTACATGGCCTTGGCATTGAGACCA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGA-TATAAGCC
** *
84369301 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAGCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATAAGCC
* * *
84369347 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-TTACGAGATGA-CAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGAT-ATAAGCC
** * * * * * *
84369393 AGTGTAAGACCATGTAAGGGACATGGCATTGACTTC-AAAAATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATAAGCC
* * *
84369440 AGTGTAAGACCATGTCTGGGACATGGCAT-GGACTTGAGATATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATAAGCC
84369487 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
84369518 ACACCTTACC
Statistics
Matches: 207, Mismatches: 43, Indels: 28
0.74 0.15 0.10
Matches are distributed among these distances:
45 2 0.01
46 71 0.34
47 106 0.51
48 24 0.12
49 3 0.01
51 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATAAGCC
Found at i:84383268 original size:39 final size:40
Alignment explanation
Indices: 84383223--84383407 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
84383213 GCTCCTCGTT
* * *
84383223 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
84383263 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
84383302 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
84383342 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
84383383 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
84383408 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:84383323 original size:40 final size:39
Alignment explanation
Indices: 84383190--84383407 Score: 165
Period size: 40 Copynumber: 5.5 Consensus size: 39
84383180 AAATCACGTA
* * **
84383190 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCG--CACAATG
* * * * *
84383229 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
* *
84383268 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * *
84383308 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * * * *
84383348 CCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTA-GCAAC-TCGCACAATG
*
84383388 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
84383408 CAGCATTCAA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.34
40 85 0.59
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
Found at i:84387876 original size:27 final size:26
Alignment explanation
Indices: 84387834--84387945 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
84387824 AGGAAGCATC
*
84387834 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
84387861 CTGGTGGCTCTCCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
* *
84387888 TTGGTGGCTCTGCCACGATTATCTGTAA
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
84387916 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
84387942 CTGG
1 CTGG
84387946 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
26 7 0.10
27 47 0.67
28 15 0.21
29 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:84388900 original size:16 final size:16
Alignment explanation
Indices: 84388879--84388909 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84388869 TGGGTTTACA
*
84388879 AAAAACAAAGATTTTC
1 AAAAACAAAAATTTTC
84388895 AAAAACAAAAATTTT
1 AAAAACAAAAATTTT
84388910 ATAAAGATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.10, G:0.03, T:0.26
Consensus pattern (16 bp):
AAAAACAAAAATTTTC
Found at i:84392038 original size:79 final size:80
Alignment explanation
Indices: 84391939--84392159 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 80
84391929 CTCGTTCAAG
* * ** * *
84391939 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
84392002 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
84392018 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
84392083 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
84392098 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
84392160 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 74 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:84392090 original size:80 final size:80
Alignment explanation
Indices: 84391979--84392159 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
84391969 CTCATTCAAT
* * *
84391979 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
84392042 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
84392058 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
84392122 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
84392139 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
84392160 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:84392119 original size:40 final size:40
Alignment explanation
Indices: 84391976--84392159 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
84391966 TAACTCATTC
* *
84391976 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
84392016 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
84392056 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
84392096 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
84392137 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
84392160 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:84399985 original size:39 final size:39
Alignment explanation
Indices: 84399858--84400040 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 39
84399848 TAACTCATTC
* * *
84399858 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTATAACTCGCACA
*
84399898 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-TAACTCGCACA
*
84399938 AAGGCCTTCGGGACTTAACCCGGAATTATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTATAACTCGCACA
* ** * *
84399977 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TA-TAAC-TCGCACA
*
84400018 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
84400041 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
38 5 0.04
39 30 0.25
40 76 0.62
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTATAACTCGCACA
Found at i:84399987 original size:79 final size:80
Alignment explanation
Indices: 84399861--84400040 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
84399851 CTCATTCAAT
* * *
84399861 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
84399924 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
* **
84399940 GGCCTTCGGGACTTAACCCGGA-ATTATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATAT
1 -GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATAT
84400004 AGTCACTTAGCACAAA
65 AGTCACTTAGCACAAA
*
84400020 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
84400041 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 31 0.35
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:84401048 original size:13 final size:13
Alignment explanation
Indices: 84401030--84401054 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84401020 GATGAGCATT
84401030 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
84401043 TTTTTTTTCTTT
1 TTTTTTTTCTTT
84401055 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:84404237 original size:38 final size:38
Alignment explanation
Indices: 84404178--84404267 Score: 139
Period size: 38 Copynumber: 2.4 Consensus size: 38
84404168 CTACTCCTCA
*
84404178 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACC
1 AATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCA-C
84404218 AATGCCTTCGGACTT-GCCCGGATATAGTAACTCGCAC
1 AATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCAC
84404255 AATG-CTTCGGACT
1 AATGCCTTCGGACT
84404268 AGGTGCTCTT
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
36 9 0.18
37 5 0.10
38 20 0.41
39 6 0.12
40 9 0.18
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.24
Consensus pattern (38 bp):
AATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCAC
Found at i:84412468 original size:40 final size:39
Alignment explanation
Indices: 84412413--84412561 Score: 201
Period size: 40 Copynumber: 3.7 Consensus size: 39
84412403 GGATTTAACT
*
84412413 GGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCC
1 GGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
84412453 GGATATAGTAGCTCGCACCAATGCCTTCGGGACTTGGCCC
1 GGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCC
84412493 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
84412533 GGA-ATTAGGCACTAGCACAAATGCCTTCG
1 GGATA-TA-GTACTCGCACAAATGCCTTCG
84412562 TTATCATCCA
Statistics
Matches: 98, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 93 0.95
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
GGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:84416743 original size:20 final size:22
Alignment explanation
Indices: 84416714--84416757 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 22
84416704 ATCTTCTCGA
*
84416714 TTTGGTTTG-TTTTGTC-CCTT
1 TTTGGCTTGTTTTTGTCTCCTT
84416734 TTTGGCTTGTTTTTGTCTCCTT
1 TTTGGCTTGTTTTTGTCTCCTT
84416756 TT
1 TT
84416758 AACTCTTGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
21 7 0.33
22 6 0.29
ACGTcount: A:0.00, C:0.16, G:0.18, T:0.66
Consensus pattern (22 bp):
TTTGGCTTGTTTTTGTCTCCTT
Found at i:84424185 original size:39 final size:40
Alignment explanation
Indices: 84424080--84424287 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
84424070 TATTCGAATG
* * * *
84424080 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGAAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
84424121 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
84424161 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
84424200 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
84424240 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
84424280 ATATCCGG
1 ATATCCGG
84424288 TTAAATTCCG
Statistics
Matches: 146, Mismatches: 15, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 37 0.25
40 80 0.55
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:84424220 original size:79 final size:79
Alignment explanation
Indices: 84424080--84424301 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 79
84424070 TATTCGAATG
* * * * **
84424080 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGC
84424145 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
84424161 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGC
84424224 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
84424240 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
84424302 TATGTGATTC
Statistics
Matches: 121, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 63 0.52
80 45 0.37
81 12 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:84428860 original size:31 final size:31
Alignment explanation
Indices: 84428825--84428886 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
84428815 AACTACTCGT
*
84428825 GATCTTTCAAAACCTCAAGTCTTTAACACTA
1 GATCTTTCAAAACCTAAAGTCTTTAACACTA
* *
84428856 GATCTTTCAATAGCTAAAGTCTTTAACACTA
1 GATCTTTCAAAACCTAAAGTCTTTAACACTA
84428887 TCTTAACTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (31 bp):
GATCTTTCAAAACCTAAAGTCTTTAACACTA
Found at i:84430753 original size:105 final size:99
Alignment explanation
Indices: 84430574--84430778 Score: 286
Period size: 105 Copynumber: 2.0 Consensus size: 99
84430564 GCCTCAAGTA
* * * *
84430574 AAATTTTCTGAATCAACCCAGTGTCCTTAGGAATCCTACCTCAGAACCTCAAGCAACCATCGGAA
1 AAATTTTCTAAATCAACCCAGTGTCCTTAGAAATCCTACCCCAGAACCTCAAGCAACCATCGAAA
84430639 TCAACCCAAAAATCTGATTCAACACCCGATTCAC
66 TCAACCCAAAAATCTGATTCAACACCCGATTCAC
84430673 AAATTTTCTAAATCAACCCAGTGTCCTTCGGAACGCAAATCCTACCCC-GAAACCTCAAGCAACC
1 AAATTTTCTAAATCAACCCAGTGTCCTT----A-G-AAATCCTACCCCAG-AACCTCAAGCAACC
* *
84430737 ATCGAAATCAATCCAAAAATCTGATTCAACACCCTATTCAC
59 ATCGAAATCAACCCAAAAATCTGATTCAACACCCGATTCAC
84430778 A
1 A
84430779 CTGTGTTCTC
Statistics
Matches: 93, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
99 27 0.29
103 1 0.01
104 2 0.02
105 63 0.68
ACGTcount: A:0.37, C:0.32, G:0.10, T:0.22
Consensus pattern (99 bp):
AAATTTTCTAAATCAACCCAGTGTCCTTAGAAATCCTACCCCAGAACCTCAAGCAACCATCGAAA
TCAACCCAAAAATCTGATTCAACACCCGATTCAC
Found at i:84436163 original size:30 final size:29
Alignment explanation
Indices: 84436129--84436189 Score: 92
Period size: 26 Copynumber: 2.2 Consensus size: 29
84436119 AAAATGATTG
84436129 ATTAATAGAAATCACGATATGTATGAATGA
1 ATTAATA-AAATCACGATATGTATGAATGA
84436159 A-T--TAAAATCACGATATGTATGAATGA
1 ATTAATAAAATCACGATATGTATGAATGA
84436185 ATTAA
1 ATTAA
84436190 ATTAACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
26 23 0.82
27 3 0.11
29 1 0.04
30 1 0.04
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.31
Consensus pattern (29 bp):
ATTAATAAAATCACGATATGTATGAATGA
Found at i:84436166 original size:26 final size:26
Alignment explanation
Indices: 84436137--84436190 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
84436127 TGATTAATAG
84436137 AAATCACGATATGTATGAATGAATTA
1 AAATCACGATATGTATGAATGAATTA
84436163 AAATCACGATATGTATGAATGAATTA
1 AAATCACGATATGTATGAATGAATTA
84436189 AA
1 AA
84436191 TTAACATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (26 bp):
AAATCACGATATGTATGAATGAATTA
Found at i:84438670 original size:44 final size:43
Alignment explanation
Indices: 84438534--84438691 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 43
84438524 AGCTCGTACA
*
84438534 ATGCCAACGTCCTAAACGTGGTCTTACA-TGT-AATCAAATATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACT-TAAATCAAA-ATCG
* * ** * *
84438577 ATGCC-ACTATCCCAGACAAGGTCTTACAC-GAAATCAAAAACG
1 ATGCCAAC-GTCCTAGACGTGGTCTTACACTTAAATCAAAATCG
*
84438619 ATGCCAACGTCCTAGACGTGGTCTTACACTTAAATCATAAGTCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACTTAAATCA-AAATCG
84438663 ATGCCAACGTCCTAGACGTGGTCTTACAC
1 ATGCCAACGTCCTAGACGTGGTCTTACAC
84438692 GATAACACAT
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 27 0.28
43 35 0.37
44 33 0.35
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCTAGACGTGGTCTTACACTTAAATCAAAATCG
Found at i:84441515 original size:38 final size:38
Alignment explanation
Indices: 84441464--84441540 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
84441454 ATGCTTCAAC
84441464 TAAATATTAACACAAAAAATCAATTCTTATACTTACTT
1 TAAATATTAACACAAAAAATCAATTCTTATACTTACTT
84441502 TAAATATTAACACAAAAAATCAATTCTTATACTTACTT
1 TAAATATTAACACAAAAAATCAATTCTTATACTTACTT
84441540 T
1 T
84441541 TTATACAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.38
Consensus pattern (38 bp):
TAAATATTAACACAAAAAATCAATTCTTATACTTACTT
Found at i:84442116 original size:31 final size:32
Alignment explanation
Indices: 84442078--84442145 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 32
84442068 TCTAAAACCC
*
84442078 TAAAACCCCAAACAACCTAAAACCCT-AGTAA
1 TAAAACCCCAAAAAACCTAAAACCCTAAGTAA
* *
84442109 TAAAACCCTAAAAAACCTAAAACCCTAATTAA
1 TAAAACCCCAAAAAACCTAAAACCCTAAGTAA
84442141 TAAAA
1 TAAAA
84442146 ACCTAAACCA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 24 0.73
32 9 0.27
ACGTcount: A:0.56, C:0.26, G:0.01, T:0.16
Consensus pattern (32 bp):
TAAAACCCCAAAAAACCTAAAACCCTAAGTAA
Found at i:84442151 original size:32 final size:31
Alignment explanation
Indices: 84442091--84442152 Score: 97
Period size: 32 Copynumber: 2.0 Consensus size: 31
84442081 AACCCCAAAC
*
84442091 AACCTAAAACCCTAGTAATAAAACCCTAAAA
1 AACCTAAAACCCTAGTAATAAAAACCTAAAA
*
84442122 AACCTAAAACCCTAATTAATAAAAACCTAAA
1 AACCTAAAACCCT-AGTAATAAAAACCTAAA
84442153 CCACTAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.56, C:0.24, G:0.02, T:0.18
Consensus pattern (31 bp):
AACCTAAAACCCTAGTAATAAAAACCTAAAA
Found at i:84442152 original size:8 final size:8
Alignment explanation
Indices: 84442069--84442136 Score: 52
Period size: 8 Copynumber: 8.5 Consensus size: 8
84442059 TTTTATCAAT
84442069 CTAAAACC
1 CTAAAACC
84442077 CTAAAACC
1 CTAAAACC
* *
84442085 CCAAACAAC
1 CTAAA-ACC
84442094 CTAAAACC
1 CTAAAACC
*
84442102 CTAGTAA--
1 CTA-AAACC
84442109 -TAAAACC
1 CTAAAACC
*
84442116 CTAAAAAAC
1 CT-AAAACC
84442125 CTAAAACC
1 CTAAAACC
84442133 CTAA
1 CTAA
84442137 TTAATAAAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
5 2 0.04
6 2 0.04
8 27 0.59
9 15 0.33
ACGTcount: A:0.53, C:0.32, G:0.01, T:0.13
Consensus pattern (8 bp):
CTAAAACC
Found at i:84448448 original size:28 final size:28
Alignment explanation
Indices: 84448404--84448469 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
84448394 TAAATTTTAA
* *
84448404 AAGATT-AAATTATTTTTCTTATAT-TT
1 AAGATTAAAATTAATTTTATTATATATT
84448430 AAGATTAAAATATAATTTTATTATATATT
1 AAGATTAAAAT-TAATTTTATTATATATT
*
84448459 AA-TTTAAAATT
1 AAGATTAAAATT
84448470 TTTAAATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 6 0.18
27 5 0.15
28 19 0.56
29 4 0.12
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (28 bp):
AAGATTAAAATTAATTTTATTATATATT
Found at i:84455580 original size:15 final size:16
Alignment explanation
Indices: 84455560--84455597 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
84455550 ATTGAGTAGA
*
84455560 AAATAAATTAA-TATT
1 AAATAAATAAAGTATT
84455575 AAATAAATAAAGTATT
1 AAATAAATAAAGTATT
84455591 AATATAA
1 AA-ATAA
84455598 TGTGAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 10 0.50
16 6 0.30
17 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (16 bp):
AAATAAATAAAGTATT
Found at i:84457259 original size:23 final size:23
Alignment explanation
Indices: 84457210--84457259 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
84457200 AGTTAGGGGC
* *
84457210 AAATGTATAATTTTTGTAAATAG
1 AAATGTATAATTTTTGTAAAAAA
*
84457233 AAATGTATAATTTTTTTAAAAAA
1 AAATGTATAATTTTTGTAAAAAA
84457256 AAAT
1 AAAT
84457260 ATTAATAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (23 bp):
AAATGTATAATTTTTGTAAAAAA
Found at i:84457586 original size:40 final size:40
Alignment explanation
Indices: 84457542--84457710 Score: 203
Period size: 40 Copynumber: 4.2 Consensus size: 40
84457532 AGGTTATATA
* *
84457542 TGAATGCACATACATGCCCCCGTTTGTACTTCGGTACCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * *
84457582 TGAATGCACATACGTGCCCTTGTTTGTACTTCGATACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * ** * *
84457622 TGAATGCATATATGTGTCGTTTTTTGTACTTCAGTACCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
*
84457662 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
*
84457702 CTAAATGCA
1 -TGAATGCA
84457711 TTTTAATGTC
Statistics
Matches: 106, Mismatches: 22, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
40 99 0.93
41 7 0.07
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.35
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
Found at i:84458932 original size:19 final size:19
Alignment explanation
Indices: 84458908--84458951 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
84458898 GACCCCTACA
* *
84458908 TCTCAAATTTTCATG-TTTT
1 TCTCAAAATTT-ATGATTTG
84458927 TCTCAAAATTTATGATTTG
1 TCTCAAAATTTATGATTTG
84458946 TCTCAA
1 TCTCAA
84458952 TTTGATCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.50
Consensus pattern (19 bp):
TCTCAAAATTTATGATTTG
Found at i:84459488 original size:86 final size:86
Alignment explanation
Indices: 84459331--84459491 Score: 218
Period size: 86 Copynumber: 1.9 Consensus size: 86
84459321 TTTAAATTTG
* * * *
84459331 GTGAATTCATCAAGTCTGTCTCACTAGGACCACCTAAACTATGGATATGAACTCATTAAGAGTAA
1 GTGAATTCATCAAGTCTGTCTCAATAGGACCACCCAAACTATGGACATGAACTAATTAAGAGTAA
84459396 TAAACTCAACCTCACATGTTA
66 TAAACTCAACCTCACATGTTA
* * *
84459417 GTGAATTCATCAAGTTTGTCTCAATAGGACCACCCAAACCT-TGGGCCATGAATTAATTAAGAGT
1 GTGAATTCATCAAGTCTGTCTCAATAGGACCACCCAAA-CTAT-GGACATGAACTAATTAAGAGT
*
84459481 AA-GAACTCAAC
64 AATAAACTCAAC
84459492 TGTAACACCC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
86 44 0.68
87 21 0.32
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.27
Consensus pattern (86 bp):
GTGAATTCATCAAGTCTGTCTCAATAGGACCACCCAAACTATGGACATGAACTAATTAAGAGTAA
TAAACTCAACCTCACATGTTA
Found at i:84465830 original size:6 final size:6
Alignment explanation
Indices: 84465819--84465844 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
84465809 CTATCTCTGA
84465819 TCACTT TCACTT TCACTT TCACTT TC
1 TCACTT TCACTT TCACTT TCACTT TC
84465845 TGTTCAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.00, T:0.50
Consensus pattern (6 bp):
TCACTT
Found at i:84467417 original size:46 final size:46
Alignment explanation
Indices: 84467350--84467471 Score: 208
Period size: 46 Copynumber: 2.7 Consensus size: 46
84467340 CGCCCCTAAG
* *
84467350 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* *
84467396 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
84467442 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
84467472 TGCTCAACCA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:84467928 original size:30 final size:30
Alignment explanation
Indices: 84467894--84467953 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
84467884 ATTTAATACG
84467894 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
84467924 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
84467954 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:84473114 original size:28 final size:28
Alignment explanation
Indices: 84473051--84473201 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
84473041 ATATTAAGTC
*
84473051 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
84473078 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
84473106 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
*
84473134 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
84473162 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
84473191 CGCACACTTAG
1 CGCACACTTAG
84473202 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84478263 original size:46 final size:46
Alignment explanation
Indices: 84478196--84478317 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 46
84478186 CGCCCCTAAG
* * * *
84478196 TGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* *
84478242 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
*
84478288 TGAACTCGGACTTAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
84478318 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:84496111 original size:61 final size:61
Alignment explanation
Indices: 84496041--84496162 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
84496031 CTTATGATGA
84496041 CACAATCAAAACCAAACATCTTAGAATACATACATGCATATACACTATTAAAAATAAAACC
1 CACAATCAAAACCAAACATCTTAGAATACATACATGCATATACACTATTAAAAATAAAACC
* * * *
84496102 CACAATCAAAACCAAACATCTTAGTATACATACATGTATCTACACTATTAATAATAAAACC
1 CACAATCAAAACCAAACATCTTAGAATACATACATGCATATACACTATTAAAAATAAAACC
84496163 AAAACTGAGA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.50, C:0.23, G:0.03, T:0.24
Consensus pattern (61 bp):
CACAATCAAAACCAAACATCTTAGAATACATACATGCATATACACTATTAAAAATAAAACC
Found at i:84499547 original size:40 final size:39
Alignment explanation
Indices: 84499457--84499680 Score: 256
Period size: 39 Copynumber: 5.6 Consensus size: 39
84499447 TCGAATGATG
* *
84499457 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-GAGTTACTAAT
* *
84499496 ATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
*
84499537 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
84499576 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
*
84499615 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
* * *
84499654 AACCGGGCTATGTTCTGAAGGCATTTG
1 -TCCGGGCTAAG-TCCGAAGGCATTTG
84499681 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 75 0.47
40 73 0.45
41 13 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:84499557 original size:39 final size:40
Alignment explanation
Indices: 84499457--84499680 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
84499447 TCGAATGATG
* * *
84499457 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
84499496 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
84499537 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
84499576 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
84499615 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
84499654 AACCGGGCTATGTTCTGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
84499681 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 75 0.47
40 76 0.47
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:84499660 original size:79 final size:80
Alignment explanation
Indices: 84499457--84499663 Score: 278
Period size: 79 Copynumber: 2.6 Consensus size: 80
84499447 TCGAATGATG
* * * * * *
84499457 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATATCTGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
* *
84499521 TGTGCGAGTTACTAAT
65 GGTGCGAGTTACTAAA
84499537 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCATT
84499599 GGTGCGAGTTACTAAA
65 GGTGCGAGTTACTAAA
* *
84499615 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTA
84499664 TGTTCTGAAG
Statistics
Matches: 113, Mismatches: 10, Indels: 9
0.86 0.08 0.07
Matches are distributed among these distances:
78 36 0.32
79 58 0.51
80 19 0.17
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTG
GTGCGAGTTACTAAA
Found at i:84499702 original size:79 final size:79
Alignment explanation
Indices: 84499457--84499713 Score: 220
Period size: 79 Copynumber: 3.3 Consensus size: 79
84499447 TCGAATGATG
* * * * * * *
84499457 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACT-ATATCTGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA-CCGGGCTAAG-CCCGAAGGCAT
* ** *
84499520 TTGTGCGAGTTACTAAT
63 TGGAACGAGTTACTAAA
* *
84499537 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
**
84499601 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
* * *
84499615 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTTCTGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
* *
84499679 TGAACGAG-TAGCTATA
64 GGAACGAGTTA-CTAAA
* *
84499695 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
84499714 TACGTGATTC
Statistics
Matches: 151, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 37 0.25
79 72 0.48
80 42 0.28
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
AACGAGTTACTAAA
Found at i:84502864 original size:45 final size:45
Alignment explanation
Indices: 84502800--84502890 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
84502790 AGGATTATGC
*
84502800 TATGTGTTTTTGTGTAAGACCACATCT-AGGATGTTGGCACCGATA
1 TATGTGTTTTCGTGTAAGACCACATCTGA-GATGTTGGCACCGATA
** *
84502845 TATGTGTTTTCGTGTAAGACCATGTCTGAGATGTTGGCATCGATA
1 TATGTGTTTTCGTGTAAGACCACATCTGAGATGTTGGCACCGATA
84502890 T
1 T
84502891 GTGATTACGA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 40 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.37
Consensus pattern (45 bp):
TATGTGTTTTCGTGTAAGACCACATCTGAGATGTTGGCACCGATA
Found at i:84502905 original size:43 final size:43
Alignment explanation
Indices: 84502844--84503011 Score: 139
Period size: 43 Copynumber: 4.0 Consensus size: 43
84502834 TGGCACCGAT
* * * *
84502844 ATATGTGTTTTCGTGTAAGACCATGTCTGAGATGTTGGCATCG
1 ATATGTGATTACGAGTAAGACCATGTCTGAGACGTTGGCATCG
* * *
84502887 ATATGTGATTACGAGTAAGACCATGTATGAGACATCGGCATC-
1 ATATGTGATTACGAGTAAGACCATGTCTGAGACGTTGGCATCG
* * * * *
84502929 ATATTTGATT-CGTGTAAGACCTTGTTTGGGACAG-TGGCATCG
1 ATATGTGATTACGAGTAAGACCATGTCTGAGAC-GTTGGCATCG
* * *
84502971 ATATGAGA-TA-GCATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGATTACG-A-GTAAGACCATGTCTGAGACGTTGGCAT
84503012 TGTTTGATAT
Statistics
Matches: 99, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 26 0.26
42 16 0.16
43 57 0.58
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.31
Consensus pattern (43 bp):
ATATGTGATTACGAGTAAGACCATGTCTGAGACGTTGGCATCG
Found at i:84503011 original size:84 final size:89
Alignment explanation
Indices: 84502812--84503011 Score: 191
Period size: 84 Copynumber: 2.3 Consensus size: 89
84502802 TGTGTTTTTG
* * * * * *
84502812 TGTAAGACCACATCTAGGATGTTGGCACCGATATATGTGTTTTCGTGTAAGACCATGTCTGAGAT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTATTCGTGTAAGACCATGTCTGAGAA
*
84502877 GTTGGCATCGATATGTGATTACGA
66 GTTGGCATCGATATGAGATTACGA
* * * * * * * *
84502901 -GTAAGACCATGTATGAGACATCGGCATC-ATAT-T-TG-ATTCGTGTAAGACCTTGTTTGGGAC
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTATTCGTGTAAGACCATGTCTGAGA-
84502961 AG-TGGCATCGATATGAGA-TA-GCA
65 AGTTGGCATCGATATGAGATTACG-A
84502984 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
84503012 TGTTTGATAT
Statistics
Matches: 88, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
82 1 0.01
83 3 0.03
84 57 0.65
85 3 0.03
86 1 0.01
87 4 0.05
88 19 0.22
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (89 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTATTCGTGTAAGACCATGTCTGAGAA
GTTGGCATCGATATGAGATTACGA
Found at i:84504618 original size:38 final size:38
Alignment explanation
Indices: 84504567--84504643 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
84504557 CCTTGTCATG
84504567 AAGTGCCACACGCCCGCGTAGACGGGCTGTGCGGACTC
1 AAGTGCCACACGCCCGCGTAGACGGGCTGTGCGGACTC
* * *
84504605 AAGTGTCACACGCCCGTGTAGACGGGCTGTGTGGACTC
1 AAGTGCCACACGCCCGCGTAGACGGGCTGTGCGGACTC
84504643 A
1 A
84504644 CACGCTCATG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.17
Consensus pattern (38 bp):
AAGTGCCACACGCCCGCGTAGACGGGCTGTGCGGACTC
Found at i:84508377 original size:27 final size:27
Alignment explanation
Indices: 84508345--84508403 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
84508335 GGGCATAATC
84508345 ATCATTCTACCATACAGGGGTATTACA
1 ATCATTCTACCATACAGGGGTATTACA
* * *
84508372 GTCATTTTACCCTACAGGGGTATTACA
1 ATCATTCTACCATACAGGGGTATTACA
84508399 ATCAT
1 ATCAT
84508404 CTTACAAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (27 bp):
ATCATTCTACCATACAGGGGTATTACA
Found at i:84508973 original size:51 final size:51
Alignment explanation
Indices: 84508897--84508999 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
84508887 ATGTTTCACG
*
84508897 ACGTACAGTTACACACCTGTTATGGATTGTAGTCGAACCGCTTCCAAGATT
1 ACGTACAATTACACACCTGTTATGGATTGTAGTCGAACCGCTTCCAAGATT
*
84508948 ACGTACAATTACACACTTGTTATGGATTGTAGTCGAACCGCTTCCAAGATT
1 ACGTACAATTACACACCTGTTATGGATTGTAGTCGAACCGCTTCCAAGATT
84508999 A
1 A
84509000 AGCACCTATG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (51 bp):
ACGTACAATTACACACCTGTTATGGATTGTAGTCGAACCGCTTCCAAGATT
Found at i:84512414 original size:28 final size:28
Alignment explanation
Indices: 84512371--84512424 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
84512361 CCACCACAGA
* * *
84512371 AACAGTATCAGGTGGGCCTTAGCCCATT
1 AACAGAATCAGATGGGCCTAAGCCCATT
84512399 AACAGAATCAGATGGGCCTAAGCCCA
1 AACAGAATCAGATGGGCCTAAGCCCA
84512425 ATATAGAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.26, G:0.24, T:0.19
Consensus pattern (28 bp):
AACAGAATCAGATGGGCCTAAGCCCATT
Found at i:84518376 original size:13 final size:13
Alignment explanation
Indices: 84518358--84518386 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
84518348 TTAAAAATTA
84518358 TTATATATATATT
1 TTATATATATATT
84518371 TTATATATATATT
1 TTATATATATATT
84518384 TTA
1 TTA
84518387 AGTTATTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTATATATATATT
Found at i:84518563 original size:25 final size:25
Alignment explanation
Indices: 84518529--84518576 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
84518519 TTAAATTAAC
84518529 TATTATATATTA-CTTAATTTAAAAT
1 TATTATATA-TACCTTAATTTAAAAT
* *
84518554 TATTTTATATACCTTATTTTAAA
1 TATTATATATACCTTAATTTAAA
84518577 CCCATTTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (25 bp):
TATTATATATACCTTAATTTAAAAT
Found at i:84530985 original size:205 final size:202
Alignment explanation
Indices: 84530619--84531325 Score: 982
Period size: 205 Copynumber: 3.4 Consensus size: 202
84530609 ACAAATCTGG
*
84530619 CCTTCAGATGTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAGCAAA
1 CCTTCAGATGTT-TACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAA
* * * *
84530684 TCGAAGACATAGCTTATTTGGCTTTCATGTGATTACGATAAAGCAAATCTAAGATGATTTGTCGT
65 TCGAAGACATAGCTGATTTGGCTTTCACGTGATTACAATGAAGCAAATCTAAGATGATTTGTCGT
* *
84530749 CTCTGTATTATCAGAGAACGAATCGAAGTTTGGCATCTTCAGTTTGATGGAGAGCAGACACATAG
130 CTCTGTATTGTCAGAGAAAGAATCGAAGTTTGGCATCTTCA-TTTGATGGAGAGCAGACACATAG
84530814 CAGATCTAA
194 CAGATCTAA
* * *
84530823 CCTTTAGATGATTTCACTGAAGTAGATCCAAGATGGTTTGGCATCTTTGTGTTTACAAGGAACAA
1 CCTTCAGATG-TTT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAA
84530888 ATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACAATGAAGCAAATCTAAGATGATTTGTCG
64 ATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACAATGAAGCAAATCTAAGATGATTTGTCG
* *
84530953 TCTCTGTATTGTCAGAGAAGGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATA
129 TCTCTGTATTGTCAGAGAAAGAATCGAAGTTTGGCATCTTCA-TTTGATGGAGAGCAGACACATA
**
84531018 GCAGATCTCG
193 GCAGATCTAA
* * *
84531028 CCTTCGGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGAATCCTTGTGTTTACAAGGAACAA
1 CCTTCAGATGTTTA--CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAA
* * * * *
84531093 ATCGAAGACACAGCTGATTTGGTTTTCACGTGTTTACATTGAAACAAATCTAAGATGATTTGTCG
64 ATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACAATGAAGCAAATCTAAGATGATTTGTCG
* * * * * *
84531158 TCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATCTCCATTTCAATAGAGAGCAGATACATA
129 TCTCTGTATTGTCAGAGAAAGAATCGAAGTTTGGCATCTTCATTT-GATGGAGAGCAGACACATA
*
84531223 GCAGATCTGA
193 GCAGATCTAA
* * * *
84531233 TCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAACA
1 CCTTCAGATG-TT-TACTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
** * *
84531298 AATTAAAGACATAGCAGATTTGACTTTC
63 AATCGAAGACATAGCTGATTTGGCTTTC
84531326 GGATGTTCCC
Statistics
Matches: 447, Mismatches: 48, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
203 1 0.00
204 16 0.04
205 368 0.82
206 60 0.13
207 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (202 bp):
CCTTCAGATGTTTACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAAT
CGAAGACATAGCTGATTTGGCTTTCACGTGATTACAATGAAGCAAATCTAAGATGATTTGTCGTC
TCTGTATTGTCAGAGAAAGAATCGAAGTTTGGCATCTTCATTTGATGGAGAGCAGACACATAGCA
GATCTAA
Found at i:84533157 original size:12 final size:12
Alignment explanation
Indices: 84533140--84533164 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84533130 TTAAAAATTG
84533140 TTATATATATTT
1 TTATATATATTT
84533152 TTATATATATTT
1 TTATATATATTT
84533164 T
1 T
84533165 AAGTTATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATATATATTT
Found at i:84533338 original size:25 final size:25
Alignment explanation
Indices: 84533305--84533352 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
84533295 TTAAATTAAC
*
84533305 TATTATATATTA-TTTATTTTAAAAT
1 TATTATATA-TACCTTATTTTAAAAT
*
84533330 TATTTTATATACCTTATTTTAAA
1 TATTATATATACCTTATTTTAAA
84533353 CCCATTTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTATATATACCTTATTTTAAAAT
Found at i:84536107 original size:41 final size:42
Alignment explanation
Indices: 84536045--84536208 Score: 179
Period size: 44 Copynumber: 3.8 Consensus size: 42
84536035 GGATGGTTGA
84536045 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GATGTACTG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGGATGTACTG
* ** *
84536086 GCATCCGAACTCGTTGTGTTGAGTCCGAGTTCACTTATGGA-TG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT--CGGATGTACTG
* **
84536129 CGAATGTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC--G-GATGT-ACT-G
84536177 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
84536209 ACTTATGGAT
Statistics
Matches: 100, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
41 30 0.30
42 1 0.01
43 3 0.03
44 31 0.31
45 3 0.03
46 1 0.01
47 30 0.30
48 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (42 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGGATGTACTG
Found at i:84536203 original size:91 final size:87
Alignment explanation
Indices: 84536049--84536255 Score: 301
Period size: 91 Copynumber: 2.3 Consensus size: 87
84536039 GGTTGAGCAT
*
84536049 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GATGTACTGGCATCCGAACTCGTTGTGTTGAGTCCG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCGGATGTACTGGCATCCGAACTCGTTGAGTTGAGTCCG
*
84536113 AGTTCACTTATGGATGCGAATG
66 AGTTCACTTATGGATGCGAACG
*
84536135 -TGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC--G-GATGT-ACT-GGCATCCGAACTCGTTGAGTTGA
84536199 GTCCGAGTTCACTTATGGATGCGAACG
61 GTCCGAGTTCACTTATGGATGCGAACG
* *
84536226 CCCAAGCTCGTTGAGTTGAGTCTGAGTTCG
1 CCGAA-CTCGTTGAGTTGAGTCCGAGTTCG
84536256 CTTATGGGCG
Statistics
Matches: 107, Mismatches: 6, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
85 26 0.24
89 5 0.05
90 3 0.03
91 49 0.46
92 2 0.02
93 22 0.21
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (87 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCGGATGTACTGGCATCCGAACTCGTTGAGTTGAGTCCG
AGTTCACTTATGGATGCGAACG
Found at i:84543221 original size:46 final size:46
Alignment explanation
Indices: 84543169--84543344 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
84543159 TGGTTGAGCA
84543169 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
84543215 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
84543260 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * ** *
84543308 CCCGAGCTCGTTGAGTTGAGTCATAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84543345 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84543336 original size:93 final size:93
Alignment explanation
Indices: 84543166--84543337 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
84543156 GGATGGTTGA
* **
84543166 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
84543231 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCAGAGTTCGTGAGATGTAACTAG
*
84543259 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
84543324 TGAGTCATAGTTCG
66 TGAGTCAGAGTTCG
84543338 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCAGAGTTCGTGAGATGTAACTAG
Found at i:84555448 original size:205 final size:203
Alignment explanation
Indices: 84555082--84555788 Score: 1056
Period size: 205 Copynumber: 3.4 Consensus size: 203
84555072 ACAAATCTGG
*
84555082 CCTTCAGATGTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAGCAAA
1 CCTTCAGATGTT-TACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAA
*
84555147 TCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGAAAATCTAAGATGATTTGTCGT
65 TCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGATTTGTCGT
84555212 CTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAG
130 CTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAG
84555277 CAGATCTCA
195 CAGATCTCA
* *
84555286 CCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGTATCTTTGTGTTTACAAGGAACAA
1 CCTTCAGATG-TTT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAA
*
84555351 ATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACAATGAAGCAAATCTAAGATGATTTGTCG
64 ATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGATTTGTCG
* * *
84555416 TCTCTGTGTTGTCAGAGAACGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGTAGACACATA
129 TCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATA
*
84555481 GCAGATCTCG
194 GCAGATCTCA
* * *
84555491 CCTTCGGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGAATCCTTGTGTTTACAAGGAACAA
1 CCTTCAGATGTTTA--CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAA
* * * * *
84555556 ATCGAAGACATAGCTGATTTTGTTTTCACGTGTTTACGTTGAAACAAATCTAAGATGATTTGTCG
64 ATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGATTTGTCG
* * * * *
84555621 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCA-TTTCAATGGAGAGCAGATACAT
129 TCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTT-GATGGAGAGCAGACACAT
*
84555685 AGCAGATCTGA
193 AGCAGATCTCA
* * * *
84555696 TCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAACA
1 CCTTCAGATG-TT-TACTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACA
* * *
84555761 AATCAAAGACATAGCAGATTTGACTTTC
63 AATCGAAGACATAGCTGATTTGGCTTTC
84555789 GGATGTTCCC
Statistics
Matches: 454, Mismatches: 41, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
203 1 0.00
204 17 0.04
205 373 0.82
206 61 0.13
207 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (203 bp):
CCTTCAGATGTTTACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAAT
CGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGATTTGTCGTC
TCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGC
AGATCTCA
Found at i:84555953 original size:44 final size:44
Alignment explanation
Indices: 84555871--84555957 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
84555861 GAGATCAGCA
* *
84555871 TGGCATCCCTGTGCTTATAGGGAACAAGTTGGAAATAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAATAGCAGATT
* *
84555915 TGGCATCCCTGTGTTTATAGGGGACAA-ATCGAAGATAGCAGAT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAA-ATAGCAGAT
84555958 CTAACATTCC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 4 0.11
44 34 0.89
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAATAGCAGATT
Found at i:84556036 original size:13 final size:13
Alignment explanation
Indices: 84556018--84556042 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84556008 TCCCTATGAA
84556018 CAGATCGAAGAAG
1 CAGATCGAAGAAG
84556031 CAGATCGAAGAA
1 CAGATCGAAGAA
84556043 CTCAAAACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.28, T:0.08
Consensus pattern (13 bp):
CAGATCGAAGAAG
Found at i:84557800 original size:25 final size:25
Alignment explanation
Indices: 84557767--84557814 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
84557757 TTAAATTAAC
84557767 TATTATATATTA-CTTATTTTAAAAT
1 TATTATATA-TACCTTATTTTAAAAT
*
84557792 TATTTTATATACCTTATTTTAAA
1 TATTATATATACCTTATTTTAAA
84557815 CCCATTTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (25 bp):
TATTATATATACCTTATTTTAAAAT
Found at i:84565949 original size:15 final size:15
Alignment explanation
Indices: 84565929--84565959 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
84565919 AAATATGAAA
84565929 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
84565944 GATATGTTTTGTATT
1 GATATGTTTTGGATT
84565959 G
1 G
84565960 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:84566591 original size:45 final size:43
Alignment explanation
Indices: 84566509--84566683 Score: 124
Period size: 43 Copynumber: 4.1 Consensus size: 43
84566499 AGGATTATGC
* **
84566509 TATGTGTTTTTGTGTAAGACCACATCT-AGGACATTGGCACCGATA
1 TATGTGTTTTCGTGTAAGACCATGTCTGA-GACATTGGCACCG--A
** *
84566554 TATGTGTTTTCGTGTAAGACCATGTCTGAGATGTTGGCATCGA
1 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCACCGA
* * * * * * *
84566597 TATGTGGTTACGAGTAAGACCATGTATGAGACATCGGTATC-A
1 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCACCGA
* * * * * *
84566639 TATTTG-ATTCG-GTAAGACCTTGTCTGGGACAGTGGCATCGA
1 TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCACCGA
84566680 TATG
1 TATG
84566684 AGATAGCATG
Statistics
Matches: 104, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
40 22 0.21
41 7 0.07
42 6 0.06
43 34 0.33
45 34 0.33
46 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
TATGTGTTTTCGTGTAAGACCATGTCTGAGACATTGGCACCGA
Found at i:84578929 original size:28 final size:27
Alignment explanation
Indices: 84578886--84578969 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 27
84578876 GGAGGAAGCA
* *
84578886 TCCTGGTGGCTA-TGCCATAAATTATTTG
1 TCCTGGTGGC-ACTGCCACAAA-TATCTG
* *
84578914 TCCTGGTGGCCCTGCCACATATATCTG
1 TCCTGGTGGCACTGCCACAAATATCTG
*
84578941 TTCTGGTGGCACTGCCACAAAATATCTG
1 TCCTGGTGGCACTGCCAC-AAATATCTG
84578969 T
1 T
84578970 ATCTGGTGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
27 21 0.45
28 26 0.55
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
TCCTGGTGGCACTGCCACAAATATCTG
Found at i:84578955 original size:27 final size:29
Alignment explanation
Indices: 84578916--84578977 Score: 92
Period size: 27 Copynumber: 2.2 Consensus size: 29
84578906 ATTATTTGTC
* *
84578916 CTGGTGGCCCTGCCAC-ATATATCTGT-T
1 CTGGTGGCACTGCCACAAAATATCTGTAT
84578943 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGTAT
84578972 CTGGTG
1 CTGGTG
84578978 ACTCTGTCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 15 0.48
28 9 0.29
29 7 0.23
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (29 bp):
CTGGTGGCACTGCCACAAAATATCTGTAT
Found at i:84586764 original size:28 final size:29
Alignment explanation
Indices: 84586733--84586795 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
84586723 AGGAAGCGTC
* * *
84586733 CTGGTGGCTATGCCACAAATTATCTG-TT
1 CTGGTGGCCATGCCACAAAATATCTGCAT
*
84586761 CTGGTGGCCCTGCCACAAAATATCTGCAT
1 CTGGTGGCCATGCCACAAAATATCTGCAT
84586790 CTGGTG
1 CTGGTG
84586796 ACTCTGTCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 23 0.77
29 7 0.23
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (29 bp):
CTGGTGGCCATGCCACAAAATATCTGCAT
Found at i:84586806 original size:29 final size:28
Alignment explanation
Indices: 84586743--84586806 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
84586733 CTGGTGGCTA
* * *
84586743 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGATCTGGTGACCC
*
84586771 TGCCACAAAATATCTGCATCTGGTGACTC
1 TGCCACAAAATATCTG-ATCTGGTGACCC
*
84586800 TGTCACA
1 TGCCACA
84586807 TTTTCTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (28 bp):
TGCCACAAAATATCTGATCTGGTGACCC
Found at i:84593808 original size:48 final size:48
Alignment explanation
Indices: 84593749--84594065 Score: 327
Period size: 48 Copynumber: 6.6 Consensus size: 48
84593739 TATGTGTGCT
* * * * *
84593749 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACG-ATATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTA-ACGAGAGCC
* * * *
84593797 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGTAACGAGTGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTAACGAGAGCC
* * * * *
84593845 ACTGTAAAACCATGTTTGGAACATGGCATTGGCAATGTAACGAGAACC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTAACGAGAGCC
*
84593893 AATGTAAGACCATGTTTGGAACATGGCATCGACAATGTAACGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTAACGAGAGCC
* * * *
84593941 AGTGTAAGACCATGTTTGGAACATGACATCGGC-AT-TAAGACAAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGT-A-ACGAGAGCC
* * * *** * *
84593989 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCCCG-ACATGTGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTA-ACGAGAGCC
84594037 AGTGTAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACCATGTTTGGAACATGGCAT
84594066 TGGCAATTCA
Statistics
Matches: 230, Mismatches: 34, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
46 1 0.00
47 3 0.01
48 225 0.98
49 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.21
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTAACGAGAGCC
Found at i:84593917 original size:96 final size:97
Alignment explanation
Indices: 84593790--84594073 Score: 369
Period size: 96 Copynumber: 2.9 Consensus size: 97
84593780 ACCACGATAT
* * *
84593790 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGTAACGAGTGCCACTGTAAAAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGTAACGAGAGCCAGTGTAAGAC
84593855 CATGTTTGGAACATGGCATTGGCAATGT-A-AC
66 CATGTTTGGAACATGGCATTGGCAAT-TAAGAC
* * * * *
84593886 GAGAACCAATGTAAGACCATGTTTGGAACATGGCATCGACAATGTAACGAGAGCCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGTAACGAGAGCCAGTGTAAGAC
* *
84593951 CATGTTTGGAACATGACATCGGC-ATTAAGAC
66 CATGTTTGGAACATGGCATTGGCAATTAAGAC
* * *** * *
84593982 AAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCCG-ACATGTGAGCCAGTGTAAGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGTA-ACGAGAGCCAGTGTAAGA
84594046 CCATGTTTGGAACATGGCATTGGCAATT
65 CCATGTTTGGAACATGGCATTGGCAATT
84594074 CACCCTCTTG
Statistics
Matches: 160, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
94 1 0.01
95 4 0.03
96 152 0.95
97 3 0.02
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (97 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGTAACGAGAGCCAGTGTAAGAC
CATGTTTGGAACATGGCATTGGCAATTAAGAC
Found at i:84595931 original size:40 final size:39
Alignment explanation
Indices: 84595870--84595962 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 39
84595860 TCTCGGTATT
* *
84595870 ACACACTTAGTGCCTCATATAGCCAAAGCTATTCCAATTT
1 ACACACTTAGTG-CTCATATAGCCAAAGCTATTCCAAATC
* *
84595910 TCACACTTAGTGCT-ATTTATAGCCAAAGCTATTTCAAATC
1 ACACACTTAGTGCTCA--TATAGCCAAAGCTATTCCAAATC
84595950 ACACACTTAGTGC
1 ACACACTTAGTGC
84595963 CGAACATAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 43 0.93
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.31
Consensus pattern (39 bp):
ACACACTTAGTGCTCATATAGCCAAAGCTATTCCAAATC
Found at i:84598933 original size:64 final size:64
Alignment explanation
Indices: 84598853--84599036 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
84598843 AGACATTATG
* * * *
84598853 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACAACATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
84598917 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
84598982 AA
63 AA
* * *
84598984 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
84599037 CAAAATTATG
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 21 0.21
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:84602984 original size:30 final size:30
Alignment explanation
Indices: 84602950--84603010 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
84602940 TTCCCAAGCC
*
84602950 TAGGGGGAAAAGTGTAAATATGAAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
* * * *
84602980 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
84603010 T
1 T
84603011 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.03, G:0.26, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGAAAAAGTT
Found at i:84605225 original size:27 final size:27
Alignment explanation
Indices: 84605167--84605256 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
84605157 AGGAAGCGTC
84605167 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
84605195 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
* *
84605222 CTGGTGGCACTACCACAAAATATCTGCAT
1 CTGGTGGCACTGCCAC-AAATATCTG-TT
84605251 CTGGTG
1 CTGGTG
84605257 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:84616587 original size:31 final size:31
Alignment explanation
Indices: 84616552--84616614 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
84616542 CCATGTGCTA
84616552 GGCTGTGTGGAGGACACGATTGAGACACACG
1 GGCTGTGTGGAGGACACGATTGAGACACACG
84616583 GGCTGTGTGGAGGACACGATTGAGACACACG
1 GGCTGTGTGGAGGACACGATTGAGACACACG
84616614 G
1 G
84616615 CCGTGTCTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.19, G:0.40, T:0.16
Consensus pattern (31 bp):
GGCTGTGTGGAGGACACGATTGAGACACACG
Found at i:84620935 original size:20 final size:20
Alignment explanation
Indices: 84620910--84620947 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
84620900 GTTATACATA
84620910 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
84620930 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
84620948 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:84621278 original size:102 final size:102
Alignment explanation
Indices: 84621102--84621300 Score: 398
Period size: 102 Copynumber: 2.0 Consensus size: 102
84621092 AATGCTCACT
84621102 TATATCAACAACATAACATTTAAATTTACAAAATAACAAAGTATTATACATGATACATATTGCAT
1 TATATCAACAACATAACATTTAAATTTACAAAATAACAAAGTATTATACATGATACATATTGCAT
84621167 TATTCACATATGAACTTACCTTTGTAACAGCCCAAAA
66 TATTCACATATGAACTTACCTTTGTAACAGCCCAAAA
84621204 TATATCAACAACATAACATTTAAATTTACAAAATAACAAAGTATTATACATGATACATATTGCAT
1 TATATCAACAACATAACATTTAAATTTACAAAATAACAAAGTATTATACATGATACATATTGCAT
84621269 TATTCACATATGAACTTACCTTTGTAACAGCC
66 TATTCACATATGAACTTACCTTTGTAACAGCC
84621301 TGATTTTGGG
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 97 1.00
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (102 bp):
TATATCAACAACATAACATTTAAATTTACAAAATAACAAAGTATTATACATGATACATATTGCAT
TATTCACATATGAACTTACCTTTGTAACAGCCCAAAA
Found at i:84624731 original size:13 final size:13
Alignment explanation
Indices: 84624713--84624741 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
84624703 GGTTGTTTAT
84624713 TAAACTAATTAAC
1 TAAACTAATTAAC
84624726 TAAACTAATTAAC
1 TAAACTAATTAAC
84624739 TAA
1 TAA
84624742 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:84629142 original size:46 final size:46
Alignment explanation
Indices: 84629090--84629456 Score: 495
Period size: 46 Copynumber: 8.0 Consensus size: 46
84629080 AGTGTGCTCT
84629090 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
84629136 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATTGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
84629182 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
84629228 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *
84629274 ATGATA-GAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
84629320 GTGACATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** *
84629366 ATGACGGGAAAATGAATAAGAACATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
84629413 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
84629457 TCATGTCAAA
Statistics
Matches: 295, Mismatches: 23, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.00
46 252 0.85
47 42 0.14
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:84629414 original size:24 final size:24
Alignment explanation
Indices: 84629341--84629415 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
84629331 TGTATAAGAC
84629341 CATGGTTGAAAGATACCATGGCAA
1 CATGGTTGAAAGATACCATGGCAA
* *
84629365 CATGACG-GGAAA-ATGA--ATAAG-AA
1 CATG--GTTGAAAGAT-ACCAT-GGCAA
84629388 CATGGTTGAAAGATACCATGGCAA
1 CATGGTTGAAAGATACCATGGCAA
84629412 CATG
1 CATG
84629416 ACAGAAAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 18
0.63 0.07 0.30
Matches are distributed among these distances:
21 1 0.03
22 5 0.13
23 11 0.29
24 15 0.39
25 5 0.13
26 1 0.03
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (24 bp):
CATGGTTGAAAGATACCATGGCAA
Found at i:84629763 original size:16 final size:17
Alignment explanation
Indices: 84629742--84629774 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
84629732 ATGATGGAGT
84629742 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
84629758 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
84629775 TATACTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:84631947 original size:49 final size:49
Alignment explanation
Indices: 84631875--84632145 Score: 326
Period size: 49 Copynumber: 5.5 Consensus size: 49
84631865 GTACGCATAA
* *
84631875 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGTTACATGTAG
1 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
* ** *
84631924 TAGCCTACACTTAGTACTACACATGAAACCAATTATCCGTTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
* * ** ** * *
84631973 TAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACATGTAG
1 TAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACGTAG
* * * * * * *
84632023 TAGTCTGCACTTAGAACTACACATGTGATCGAAGTTATCGGGTACGCATAG
1 TAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACGTAG
84632074 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
84632123 TAGCCTGCACTTAGTACTACACA
1 TAGCCTGCACTTAGTACTACACA
84632146 CGTGACCTCA
Statistics
Matches: 186, Mismatches: 33, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
49 108 0.58
50 43 0.23
51 35 0.19
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
Done.