Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 265 of 325
Found at i:84632428 original size:26 final size:26
Alignment explanation
Indices: 84632399--84632449 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
84632389 TCATACAACC
* *
84632399 CATGTAATAGTAATTTAACATTCAAT
1 CATGTAACAATAATTTAACATTCAAT
**
84632425 CATGTAACAATAATTTGCCATTCAA
1 CATGTAACAATAATTTAACATTCAA
84632450 ATTCACATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (26 bp):
CATGTAACAATAATTTAACATTCAAT
Found at i:84637391 original size:83 final size:83
Alignment explanation
Indices: 84637301--84637463 Score: 290
Period size: 83 Copynumber: 2.0 Consensus size: 83
84637291 TAATTCCTTA
*
84637301 TTTTTTTGAAATCTAATTCAACTTACACAATTTTTGGTAAAATTTCAAAGTCACGCAACTGCTGC
1 TTTTTTTGAAATCTAATTCAACTTACACAATTTTTGGTAAAATTTCAAAGTCACGCAACTGCAGC
84637366 TGTCCAACACTGTTTAAT
66 TGTCCAACACTGTTTAAT
* * *
84637384 TTTTTTTGAAATTTAATTCAACTTACACAATTTTTGGTGAAATTTCAAAGTCACGCAATTGCAGC
1 TTTTTTTGAAATCTAATTCAACTTACACAATTTTTGGTAAAATTTCAAAGTCACGCAACTGCAGC
84637449 TGTCCAACACTGTTT
66 TGTCCAACACTGTTT
84637464 TACTACTAAA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 76 1.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (83 bp):
TTTTTTTGAAATCTAATTCAACTTACACAATTTTTGGTAAAATTTCAAAGTCACGCAACTGCAGC
TGTCCAACACTGTTTAAT
Found at i:84637821 original size:100 final size:100
Alignment explanation
Indices: 84637694--84637886 Score: 273
Period size: 100 Copynumber: 1.9 Consensus size: 100
84637684 TAGACAAGGC
* * *
84637694 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
* *
84637759 GTAG-TTGCAGTTAGTACTACACACGTGATCGAAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* ** *
84637794 TATCGGGTATGCATAGTAGCCAT-CACTTAGTACTACACATGCGACCAATTATCCGGTACACGTA
1 TATCGGGTATGCATAGTAGCC-TGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTA
84637858 GTAGCCTGCACTTAGTACTACACACGTGA
65 GTAGCCTGCACTTAGTACTACACACGTGA
84637887 CCTCACAATA
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
99 18 0.22
100 63 0.77
101 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (100 bp):
TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:84638165 original size:27 final size:27
Alignment explanation
Indices: 84638135--84638188 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
84638125 TCATACAACC
* *
84638135 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
84638162 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
84638189 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:84642555 original size:47 final size:47
Alignment explanation
Indices: 84642492--84642744 Score: 353
Period size: 47 Copynumber: 5.4 Consensus size: 47
84642482 CCCTTCGGGA
* * *
84642492 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * ** *
84642539 CTTATCACATATATACACCTTCACATCCATCACATCAGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
84642586 CTTATCTCATGTATACACTTTCATATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
84642633 CTTATCTCATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
84642680 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
84642727 CTTATCACATATACACAC
1 CTTATCACATATATACAC
84642745 CTTGTACATC
Statistics
Matches: 183, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 183 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:84647493 original size:21 final size:20
Alignment explanation
Indices: 84647467--84647505 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
84647457 TCAAATTGGT
*
84647467 CACACGGGCGTGTTGCCCTTC
1 CACACGAGCGTGTT-CCCTTC
84647488 CACACGAGCGTGTTCCCT
1 CACACGAGCGTGTTCCCT
84647506 GTTTCAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.13, C:0.38, G:0.26, T:0.23
Consensus pattern (20 bp):
CACACGAGCGTGTTCCCTTC
Found at i:84658533 original size:40 final size:39
Alignment explanation
Indices: 84658433--84658666 Score: 288
Period size: 40 Copynumber: 5.9 Consensus size: 39
84658423 ATTTGGATGA
* ** * *
84658433 AAACCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACT
1 AAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
84658472 AATCCAGGCTAAGTCCTGAAGGCATCTGTGCGAGTTACT
1 AAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
84658511 AAACTCGGGCTAAGTCCCGAAGGCATTTGTGAGAATTACT
1 AAAC-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
84658551 AAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 AAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
84658591 AAATCCGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTACT
1 AAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
84658631 CTAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 -AAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
84658667 AGTTATATCC
Statistics
Matches: 170, Mismatches: 22, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 35 0.21
40 132 0.78
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
AAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:84658648 original size:120 final size:119
Alignment explanation
Indices: 84658436--84658659 Score: 319
Period size: 120 Copynumber: 1.9 Consensus size: 119
84658426 TGGATGAAAA
*
84658436 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAATCCAGGCTAAGTCCTGAAGGCATCTGT
1 CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAATCCAGGCTAAGTCCTGAAGGCATCTGT
84658501 GCGAGTTACTAAACTCGGGCTAAGTCCCGAAGGCATTTGTGAGAATTACTAAAT
66 GCGAGTTACTAAACTCGGGCTAAGTCCCGAAGGCATTTGTGAGAATTACTAAAT
* ** * *
84658555 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGT-CTCGAAGGCAAT-
1 CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACT-AATCCAGGCTAAGTCCT-GAAGGC-ATC
* *
84658618 TGTGCGAGTTACTCTAAC-CGGGCTATGTCCCGAAGGCATTTG
63 TGTGCGAGTTACT-AAACTCGGGCTAAGTCCCGAAGGCATTTG
84658660 AGCGAGTAGT
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
119 33 0.35
120 55 0.59
121 5 0.05
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAATCCAGGCTAAGTCCTGAAGGCATCTGT
GCGAGTTACTAAACTCGGGCTAAGTCCCGAAGGCATTTGTGAGAATTACTAAAT
Found at i:84668210 original size:12 final size:13
Alignment explanation
Indices: 84668178--84668215 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
84668168 GAGTAGCATT
*
84668178 TTATTATTATGTAG
1 TTATTGTTAT-TAG
84668192 TTATTGTTATTAG
1 TTATTGTTATTAG
84668205 -TATTGTTATTA
1 TTATTGTTATTA
84668216 TTGAGTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.48
13 3 0.13
14 9 0.39
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (13 bp):
TTATTGTTATTAG
Found at i:84668571 original size:47 final size:47
Alignment explanation
Indices: 84668510--84668631 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
84668500 GCATTGGCAC
* *
84668510 TAAGACAAGGATACCATGTATGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACACGGCATTTGG
**
84668557 TAAGACAATAATACCATGTAAGACCATGTTTGGAACACGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACACGGCATTTGG
* *
84668604 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
84668632 GCAAGGCATG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACACGGCATTTGG
Found at i:84668674 original size:54 final size:56
Alignment explanation
Indices: 84668610--84668756 Score: 192
Period size: 54 Copynumber: 2.7 Consensus size: 56
84668600 TTGGTAAGAT
*
84668610 AAGGATATCATGTAAGACCATGGCAAGGCATGGCATTGATAAGTT-CTATAAGGC-
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGCA
* * ** * *
84668664 AAGGAAATCATGTAAGAACATATCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGCA
**
84668720 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTG
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTG
84668757 GTGAGTTCAT
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
54 39 0.50
55 35 0.45
56 4 0.05
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.22
Consensus pattern (56 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGCA
Found at i:84668734 original size:55 final size:54
Alignment explanation
Indices: 84668618--84668803 Score: 189
Period size: 55 Copynumber: 3.4 Consensus size: 54
84668608 ATAAGGATAT
* * *
84668618 CATGTAAGACCATGGCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGAAAC
* ** * **
84668672 CATGTAAGAACATATCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC-AAGGAAAC
* *
84668727 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATATA-GCAAGGATAC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATA-AGGCAAGGAAAC
* * * *
84668780 CACGTACGACCATGTCAAGACATG
1 CATGTAAGACCATGCCAAGGCATG
84668804 ACAATAGTAA
Statistics
Matches: 110, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 4 0.04
53 27 0.25
54 34 0.31
55 41 0.37
56 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGAAAC
Found at i:84670725 original size:13 final size:13
Alignment explanation
Indices: 84670709--84670741 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
84670699 TTTAATTAAA
*
84670709 TTAGTTAATTAGT
1 TTAGATAATTAGT
84670722 TTAGATAATTAGT
1 TTAGATAATTAGT
84670735 TTA-ATAA
1 TTAGATAA
84670742 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:84676043 original size:5 final size:5
Alignment explanation
Indices: 84676033--84676102 Score: 70
Period size: 5 Copynumber: 13.0 Consensus size: 5
84676023 TGAATCCTCC
84676033 TATTT TATTT TATTTT TATTT ATATTT TA-TT TATTT TATTCT TATTTT
1 TATTT TATTT TA-TTT TATTT -TATTT TATTT TATTT TATT-T TA-TTT
*
84676081 TCTTT TGATTT TATTT TCATTT
1 TATTT T-ATTT TATTT T-ATTT
84676103 CAATTTTCTT
Statistics
Matches: 56, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
4 4 0.07
5 27 0.48
6 23 0.41
7 2 0.04
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (5 bp):
TATTT
Found at i:84676051 original size:6 final size:6
Alignment explanation
Indices: 84676035--84676102 Score: 50
Period size: 6 Copynumber: 11.3 Consensus size: 6
84676025 AATCCTCCTA
* * * *
84676035 TTTTA- TTTTAT TTTTAT TTATAT TTTATTT ATTTTAT TCTTAT TTTTCT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT -TTTTAT TTTTAT TTTTAT
* *
84676084 TTTGA- TTTTAT TTTCAT TT
1 TTTTAT TTTTAT TTTTAT TT
84676103 CAATTTTCTT
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
5 9 0.19
6 32 0.67
7 4 0.08
8 3 0.06
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:84676051 original size:11 final size:11
Alignment explanation
Indices: 84676035--84676102 Score: 63
Period size: 11 Copynumber: 6.2 Consensus size: 11
84676025 AATCCTCCTA
84676035 TTTTATTTTAT
1 TTTTATTTTAT
84676046 TTTTA-TTTAT
1 TTTTATTTTAT
84676056 ATTTTA-TTTA-
1 -TTTTATTTTAT
84676066 TTTTATTCTTAT
1 TTTTATT-TTAT
*
84676078 TTTTCTTTTGA-
1 TTTTATTTT-AT
84676089 TTTTATTTTCAT
1 TTTTATTTT-AT
84676101 TT
1 TT
84676103 CAATTTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
9 5 0.10
10 6 0.12
11 28 0.58
12 9 0.19
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:84676092 original size:32 final size:31
Alignment explanation
Indices: 84676033--84676096 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 31
84676023 TGAATCCTCC
84676033 TATTTTATTTTATTTTTATTTATATTTTATT
1 TATTTTATTTTATTTTTATTTATATTTTATT
*
84676064 TATTTTATTCTTATTTTTCTTT-TGATTTTATT
1 TATTTTATT-TTATTTTTATTTAT-ATTTTATT
84676096 T
1 T
84676097 TCATTTCAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 10 0.33
32 20 0.67
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.77
Consensus pattern (31 bp):
TATTTTATTTTATTTTTATTTATATTTTATT
Found at i:84679010 original size:13 final size:13
Alignment explanation
Indices: 84678994--84679026 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
84678984 TTTAATAAAA
*
84678994 TTAGTTAATTAGT
1 TTAGATAATTAGT
84679007 TTAGATAATTAGT
1 TTAGATAATTAGT
84679020 TTA-ATAA
1 TTAGATAA
84679027 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:84684031 original size:192 final size:192
Alignment explanation
Indices: 84683704--84684093 Score: 780
Period size: 192 Copynumber: 2.0 Consensus size: 192
84683694 AGTCATTTGG
84683704 AAAAAAGTTAGTCATATTAAAACATTATTAGTTATAACACATTAAGCTCTTTAAAACAGGTTGCT
1 AAAAAAGTTAGTCATATTAAAACATTATTAGTTATAACACATTAAGCTCTTTAAAACAGGTTGCT
84683769 TATTCGTGGTATTTTTGAAAAGCAATTATCTTTTTGAAAACTCGCGACTTTCCCTACTGCTAGCA
66 TATTCGTGGTATTTTTGAAAAGCAATTATCTTTTTGAAAACTCGCGACTTTCCCTACTGCTAGCA
84683834 GTTATAAATCAAAACAAATGAAAACCCAAATTAAAGTAAAAATCCATAAAGGCCTTATTACA
131 GTTATAAATCAAAACAAATGAAAACCCAAATTAAAGTAAAAATCCATAAAGGCCTTATTACA
84683896 AAAAAAGTTAGTCATATTAAAACATTATTAGTTATAACACATTAAGCTCTTTAAAACAGGTTGCT
1 AAAAAAGTTAGTCATATTAAAACATTATTAGTTATAACACATTAAGCTCTTTAAAACAGGTTGCT
84683961 TATTCGTGGTATTTTTGAAAAGCAATTATCTTTTTGAAAACTCGCGACTTTCCCTACTGCTAGCA
66 TATTCGTGGTATTTTTGAAAAGCAATTATCTTTTTGAAAACTCGCGACTTTCCCTACTGCTAGCA
84684026 GTTATAAATCAAAACAAATGAAAACCCAAATTAAAGTAAAAATCCATAAAGGCCTTATTACA
131 GTTATAAATCAAAACAAATGAAAACCCAAATTAAAGTAAAAATCCATAAAGGCCTTATTACA
84684088 AAAAAA
1 AAAAAA
84684094 AACCCAAAAT
Statistics
Matches: 198, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
192 198 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (192 bp):
AAAAAAGTTAGTCATATTAAAACATTATTAGTTATAACACATTAAGCTCTTTAAAACAGGTTGCT
TATTCGTGGTATTTTTGAAAAGCAATTATCTTTTTGAAAACTCGCGACTTTCCCTACTGCTAGCA
GTTATAAATCAAAACAAATGAAAACCCAAATTAAAGTAAAAATCCATAAAGGCCTTATTACA
Found at i:84705488 original size:15 final size:15
Alignment explanation
Indices: 84705444--84705484 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
84705434 TATTTTAAAA
*
84705444 TTATTTTCTGTG--T
1 TTATTTTGTGTGAAT
84705457 TTATTTTGTGTGAAT
1 TTATTTTGTGTGAAT
84705472 TTATTTT-TGTGAA
1 TTATTTTGTGTGAA
84705485 ATTTTCGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 11 0.44
14 6 0.24
15 8 0.32
ACGTcount: A:0.17, C:0.02, G:0.17, T:0.63
Consensus pattern (15 bp):
TTATTTTGTGTGAAT
Found at i:84709501 original size:23 final size:24
Alignment explanation
Indices: 84709463--84709507 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
84709453 TTTGCTCTTC
*
84709463 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
84709487 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
84709508 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:84709781 original size:55 final size:52
Alignment explanation
Indices: 84709646--84709830 Score: 142
Period size: 55 Copynumber: 3.4 Consensus size: 52
84709636 CATGTCTCGG
* **
84709646 CATGGTCTTACATGGTATCCTTGCGTTATGAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACAT-GTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTAA
* * * * *
84709699 CATGGTCTTACATGGGA-CCTTTTCCTTATGGTAACTTATCAATGCCATGTCTTAA
1 CATGGTCTTACAT-GTATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCTTAA
* * **
84709754 CATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTA-CAATTTGCCATGCCTTGG
1 CATGGTCTTACATG-TATCCTTGCCTTATG-AA-CTCACCAA--TGCCATGCCTTAA
84709809 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACAT-GTATCCTT
84709831 AAACCCTAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
52 2 0.02
53 29 0.27
54 6 0.06
55 67 0.63
56 3 0.03
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (52 bp):
CATGGTCTTACATGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTAA
Found at i:84718763 original size:40 final size:40
Alignment explanation
Indices: 84718692--84718837 Score: 188
Period size: 40 Copynumber: 3.7 Consensus size: 40
84718682 TACCAGCTTG
* * *
84718692 TAGCCTGCGGGTCTCT-AGCCCGGATAGCATTCTAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCA-TA
* * *
84718732 -AGCCTGCGAGTCTTTAAGCCCAGATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCATA
* * *
84718771 TAGCCTGTGGGTCTTTAAGCCCGAAAAACATTCTAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCATA
84718811 TAGCCTGCGGGTCTTTAAGCCCGGATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATA
84718838 CAATTCCTCA
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 14 0.16
40 75 0.84
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCATA
Found at i:84732124 original size:48 final size:49
Alignment explanation
Indices: 84732053--84732146 Score: 181
Period size: 48 Copynumber: 1.9 Consensus size: 49
84732043 TAAAACTATA
84732053 ATACTCCCTAGAGGTATTATTGAAGATGTGCTAGTT-AAATTGATATTT
1 ATACTCCCTAGAGGTATTATTGAAGATGTGCTAGTTAAAATTGATATTT
84732101 ATACTCCCTAGAGGTATTATTGAAGATGTGCTAGTTAAAATTGATA
1 ATACTCCCTAGAGGTATTATTGAAGATGTGCTAGTTAAAATTGATA
84732147 AATTTATATT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 36 0.80
49 9 0.20
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (49 bp):
ATACTCCCTAGAGGTATTATTGAAGATGTGCTAGTTAAAATTGATATTT
Found at i:84733101 original size:55 final size:55
Alignment explanation
Indices: 84733013--84733130 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 55
84733003 CATGCGATAT
** * * * *
84733013 AACCGTGGTCGAGCCTACCAAAACAACATGGGCATGAGATACGCCCGTGTGGAAG
1 AACCGTGGAAGAGCCTACCAAAACAACACGGGCATGAGACACGCCCATGTGGAAC
** *
84733068 AACCGTGGAAGAGCCTACCAAAACAGTACGGGCATGCGACACGCCCATGTGGAAC
1 AACCGTGGAAGAGCCTACCAAAACAACACGGGCATGAGACACGCCCATGTGGAAC
*
84733123 ACCCGTGG
1 AACCGTGG
84733131 TCAAACCTGT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.31, C:0.28, G:0.29, T:0.13
Consensus pattern (55 bp):
AACCGTGGAAGAGCCTACCAAAACAACACGGGCATGAGACACGCCCATGTGGAAC
Found at i:84734155 original size:45 final size:45
Alignment explanation
Indices: 84734014--84734368 Score: 488
Period size: 45 Copynumber: 8.0 Consensus size: 45
84734004 CCGAATTCAT
* * *
84734014 TCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* * *
84734056 TCACCAGCATTATAGCCTGCTAGGCTCGAAGG-CCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
84734100 TCACCGGCATTATAGCATGTTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
84734145 TCACCAGCATTATAGCCTGCTAGGCTCAAAAGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
84734190 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
84734235 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
84734280 TCACTAGG-ATTATAGCATGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCAC-CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
84734325 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGACCGAATAGTAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
84734369 TGTACGATAT
Statistics
Matches: 280, Mismatches: 26, Indels: 11
0.88 0.08 0.03
Matches are distributed among these distances:
42 10 0.04
43 19 0.07
44 36 0.13
45 213 0.76
46 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:84735380 original size:25 final size:25
Alignment explanation
Indices: 84735203--84735382 Score: 270
Period size: 25 Copynumber: 7.2 Consensus size: 25
84735193 TAATAAGGGA
* *
84735203 AAATTTAACCGGAAATATTAAGAGC
1 AAATTTAACCGGAATTATTAAGAAC
84735228 AAATTTAACCGGAATTATTAAGAAC
1 AAATTTAACCGGAATTATTAAGAAC
*
84735253 AAATGTAACCGGAATTATTAAGAAC
1 AAATTTAACCGGAATTATTAAGAAC
* *
84735278 AAATTTAACCAGAATTATTAAGATC
1 AAATTTAACCGGAATTATTAAGAAC
*
84735303 AAATTTAACCGAAATTATTAAGAAC
1 AAATTTAACCGGAATTATTAAGAAC
* * *
84735328 AAGTTTAACCGAAATTATTAAGAGC
1 AAATTTAACCGGAATTATTAAGAAC
*
84735353 AAATTTAACCGGAATTATGAAGAAC
1 AAATTTAACCGGAATTATTAAGAAC
84735378 AAATT
1 AAATT
84735383 AACAAGCTTG
Statistics
Matches: 140, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 140 1.00
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27
Consensus pattern (25 bp):
AAATTTAACCGGAATTATTAAGAAC
Found at i:84745332 original size:16 final size:15
Alignment explanation
Indices: 84745302--84745340 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
84745292 TATATAAAGT
* *
84745302 TAATAATAATTAATA
1 TAATTATAATGAATA
84745317 TATATTATAATGAATA
1 TA-ATTATAATGAATA
84745333 TAATTATA
1 TAATTATA
84745341 TATTAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
TAATTATAATGAATA
Found at i:84745348 original size:16 final size:16
Alignment explanation
Indices: 84745307--84745348 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
84745297 AAAGTTAATA
84745307 ATAATTAATATATATT
1 ATAATTAATATATATT
*
84745323 ATAATGAATATA-ATT
1 ATAATTAATATATATT
84745338 ATATATTAATA
1 ATA-ATTAATA
84745349 ATTATCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
ATAATTAATATATATT
Found at i:84745460 original size:29 final size:30
Alignment explanation
Indices: 84745403--84745460 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
84745393 CTTTTGAAAA
* * *
84745403 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACAAAATTTTAT
*
84745433 TATTTACAAAAATA-GCAACAAAATTTTA
1 TATTTACAAAAAGAGGCAACAAAATTTTA
84745461 AAATAGTTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.36
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACAAAATTTTAT
Found at i:84748765 original size:47 final size:49
Alignment explanation
Indices: 84748654--84748873 Score: 225
Period size: 47 Copynumber: 4.7 Consensus size: 49
84748644 TTTGTATGTG
* *
84748654 AGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCACCTT---ATGA
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-CTTGAGATGA
*
84748699 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-TA-TTGAGACGAA
1 -AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACTTGAGATG-A
84748748 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC--GAGATGA
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACTTGAGATGA
* * *
84748793 TAGTTAGTGTAAGACCATGTTTGGGACATGGCATC-G--ACTTGAGATGTG
1 -AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACTTGAGATG-A
* *
84748841 AGCCAGTGTAAAACCATGTCTGGGACATGGCAT
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCAT
84748874 TAGCACCTTA
Statistics
Matches: 149, Mismatches: 11, Indels: 27
0.80 0.06 0.14
Matches are distributed among these distances:
45 5 0.03
46 37 0.25
47 79 0.53
48 27 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (49 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACTTGAGATGA
Found at i:84748818 original size:94 final size:93
Alignment explanation
Indices: 84748654--84748869 Score: 281
Period size: 94 Copynumber: 2.3 Consensus size: 93
84748644 TTTGTATGTG
* **
84748654 AGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACCTTATGAGAGCTAGTGTAAGACCATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACCAGATGAGAGCTAGTGTAAGACCATGT
84748719 CTGGGACATGGCATCGGTA-TTGAGACGAA
66 CTGGGACATGGCATC-G-ACTTGAGACGAA
* * * *
84748748 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTTAGTGTAAGACCATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACCAGATGAGAGCTAGTGTAAGACCATGT
* * **
84748813 TTGGGACATGGCATCGACTTGAGATGTG
66 CTGGGACATGGCATCGACTTGAGACGAA
* *
84748841 AGCCAGTGTAAAACCATGTCTGGGACATG
1 AGCTAGTGTAAGA-CATGTCTGGGACATG
84748870 GCATTAGCAC
Statistics
Matches: 107, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
92 1 0.01
93 19 0.18
94 87 0.81
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (93 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACCAGATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCGACTTGAGACGAA
Found at i:84751341 original size:27 final size:27
Alignment explanation
Indices: 84751310--84751414 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
84751300 CTGCCAGAAT
** *
84751310 AGATAATGTGATAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
84751337 AGATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
84751364 AGATATATGTGGCAAAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
* *
84751391 AGATAATTATGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
84751415 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
26 1 0.01
27 51 0.75
28 16 0.24
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:84751581 original size:28 final size:25
Alignment explanation
Indices: 84751520--84751581 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
84751510 AAAGTAACCT
** *
84751520 TAGGGGTATAATGGTAATTTTCACC
1 TAGGGGTATAACAGTAATTTTCACA
84751545 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTT-C--ACA
84751573 TAGGGGTAT
1 TAGGGGTAT
84751582 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.61
26 1 0.03
28 11 0.35
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (25 bp):
TAGGGGTATAACAGTAATTTTCACA
Found at i:84761963 original size:27 final size:26
Alignment explanation
Indices: 84761932--84762029 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 26
84761922 TGGTTGCCAG
* *
84761932 AACAGATAATGTGACAGAGTCACCAA
1 AACAGATAATGTGGCAGAGCCACCAA
* *
84761958 ACACAGACAATCGTGGCAGAGCCACCAG
1 A-ACAGATAAT-GTGGCAGAGCCACCAA
* *
84761986 AACAGATATATATGGCAGAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAA
* *
84762013 ATCAGAAAATTGTGGCA
1 AACAGATAA-TGTGGCA
84762030 TAGACACTAG
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.03
27 41 0.69
28 16 0.27
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.14
Consensus pattern (26 bp):
AACAGATAATGTGGCAGAGCCACCAA
Found at i:84761978 original size:28 final size:28
Alignment explanation
Indices: 84761933--84761989 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
84761923 GGTTGCCAGA
* *
84761933 ACAGATAATGTGACAGAGTCACCA-AAC
1 ACAGACAATGTGACAGAGCCACCAGAAC
*
84761960 ACAGACAATCGTGGCAGAGCCACCAGAAC
1 ACAGACAAT-GTGACAGAGCCACCAGAAC
84761989 A
1 A
84761990 GATATATATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 8 0.32
28 13 0.52
29 4 0.16
ACGTcount: A:0.42, C:0.26, G:0.21, T:0.11
Consensus pattern (28 bp):
ACAGACAATGTGACAGAGCCACCAGAAC
Found at i:84774573 original size:27 final size:27
Alignment explanation
Indices: 84774357--84774571 Score: 279
Period size: 27 Copynumber: 8.0 Consensus size: 27
84774347 GGGGTAAAAT
* * *
84774357 GGTAATTTTATCCC-ACAAGGGTATCTC
1 GGTAATTCTA-CCCTACAGGGGTATTTC
*
84774384 GGTAATTCTACCCTACAGGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
84774411 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84774438 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84774465 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
84774492 GGTAATTCTAACATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
84774519 AATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84774546 GGTAATTCTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
84774572 TGATAATTTT
Statistics
Matches: 164, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 3 0.02
27 161 0.98
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:84774595 original size:54 final size:54
Alignment explanation
Indices: 84774375--84774714 Score: 235
Period size: 54 Copynumber: 6.3 Consensus size: 54
84774365 TATCCCACAA
* ** * ** *
84774375 GGGTATCTCGGTAATTCTACCCTACAGGGGTA-TTACAGTAATTCTACCCTAC-AA
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGA-TAATTTTACAAT-CGAG
* * * **
84774429 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTAC-AG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGATAATTTTACAAT-CGAG
* * ** * ** **
84774483 GGGTATTTCGGTAATTCTAACATACAGGGGTATTTCAATAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGATAATTTTACAATCGAG
* *
84774537 GGGTATTTTGGTAATTCTACCCTACAAGGGTATTTTGATAATTTTACAAGTCGA-
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGATAATTTTACAA-TCGAG
* * * * * *
84774591 GGGTATTTCAGTAATT-TCACAC-ATCAGGGGTATTTTGGTAATCTTACAAACTAG
1 GGGTATTTCGGTAATTCT-ACCCTA-CAGGGGTATTTTGATAATTTTACAATCGAG
* * ** * * *
84774645 GGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTCTACCCTAC-AGGGGTATTTTGATAATTTTACAATCGAG
*
84774699 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
84774715 TTACTGATCG
Statistics
Matches: 243, Mismatches: 34, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
53 5 0.02
54 232 0.95
55 6 0.02
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (54 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGATAATTTTACAATCGAG
Found at i:84774595 original size:81 final size:80
Alignment explanation
Indices: 84774375--84774714 Score: 282
Period size: 81 Copynumber: 4.2 Consensus size: 80
84774365 TATCCCACAA
* * *** * ** *
84774375 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTACAGTAATTCTACCCTACAAGGGTATTTCGA
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAATAC-AGGGTATTTCAA
*
84774440 TAATTCTACCCTACAG
65 TAATTCTACCCTATAG
* * * *
84774456 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTA-ACATACAGGGGTATTTCA
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACA-ATACA-GGGTATTTCA
84774520 ATAATTCTACCCTATAG
64 ATAATTCTACCCTATAG
* *
84774537 GGGTATTTTGGTAATTCTACCCTACAAGGGTATTTTGATAATTTTACAAGT-CGAGGGTATTTCA
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAA-TAC-AGGGTATTTCA
* *
84774601 GTAATT-TCACAC-ATCAG
64 ATAATTCT-ACCCTAT-AG
**
84774618 GGGTATTTTGGTAA-TCTTA-CAAACTAGGGGTATTTTGGTAATTTTACAA-ACTAGGGGTATTT
1 GGGTATTTTGGTAATTC-TACCCTAC-AGGGGTATTTTGGTAATTTTACAATAC-A-GGGTATTT
*** * **
84774680 TGGTAATTTTA-CAAACTAG
62 CAATAATTCTACCCTA-TAG
84774699 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
84774715 TTACTGATCG
Statistics
Matches: 219, Mismatches: 25, Indels: 29
0.80 0.09 0.11
Matches are distributed among these distances:
80 11 0.05
81 202 0.92
82 6 0.03
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (80 bp):
GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAATACAGGGTATTTCAAT
AATTCTACCCTATAG
Found at i:84774730 original size:54 final size:53
Alignment explanation
Indices: 84774534--84774743 Score: 219
Period size: 54 Copynumber: 3.9 Consensus size: 53
84774524 TTCTACCCTA
* * * *
84774534 TAGGGGTATTTTGGTAATTCTACCCTA-CAAGGGTATTTTGATAATTTTAC-AAG
1 TAGGGGTATTTTGGTAATTTTA--CTATCAGGGGTATTTTGGTAATTTTACAAAC
* ** * * *
84774587 TCGAGGGTATTTCAGTAATTTCACACATCAGGGGTATTTTGGTAATCTTACAAAC
1 TAG-GGGTATTTTGGTAATTTTAC-TATCAGGGGTATTTTGGTAATTTTACAAAC
* *
84774642 TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACTATC-AGGGGTATTTTGGTAATTTTACAAAC
*
84774696 TAGGGGTATTTTGGTAATTTTACTGATC-GAGGGTATTTTGGAAATTTT
1 TAGGGGTATTTTGGTAATTTTACT-ATCAG-GGGTATTTTGGTAATTTT
84774744 GTAAACCAAG
Statistics
Matches: 130, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 6 0.05
54 117 0.90
55 6 0.05
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (53 bp):
TAGGGGTATTTTGGTAATTTTACTATCAGGGGTATTTTGGTAATTTTACAAAC
Found at i:84774730 original size:81 final size:78
Alignment explanation
Indices: 84774454--84774769 Score: 221
Period size: 81 Copynumber: 3.9 Consensus size: 78
84774444 TCTACCCTAC
* * * * * *
84774454 AGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTAACATAC-AG-GGGTATT
1 AGGGGTATTTTGGTAATTTTA--CTACAAGGGTATTTTGGTAATT-TTACA-ACTAGAGGGTATT
* **
84774517 TCAATAA-TTCTACCCTAT
62 TCAGTAATTTC-A-CAAAT
* * * *
84774535 AGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTTGATAATTTTACAAGTCGAGGGTATTTC
1 AGGGGTATTTTGGTAATTTTA--CTACAAGGGTATTTTGGTAATTTTACAACTAGAGGGTATTTC
*
84774600 AGTAATTTCACACAT
64 AGTAATTTCACAAAT
* * *
84774615 CAGGGGTATTTTGGTAATCTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATT
1 -AGGGGTATTTTGGTAATTTTAC-TAC-AAGGGTATTTTGGTAATTTTAC-AACTAGAGGGTATT
** *
84774679 TTGGTAATTTTACAAACT
62 TCAGTAATTTCACAAA-T
* * * *
84774697 AGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGAAATTTTGTA-AACCA-AGGATATT
1 AGGGGTATTTTGGTAATTTTACT-A-CAAGGGTATTTTGGTAA-TTT-TACAACTAGAGGGTATT
84774760 TCAGTAATTT
62 TCAGTAATTT
84774770 TGTAAATCGA
Statistics
Matches: 191, Mismatches: 31, Indels: 26
0.77 0.12 0.10
Matches are distributed among these distances:
79 2 0.01
80 10 0.05
81 165 0.86
82 12 0.06
83 2 0.01
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (78 bp):
AGGGGTATTTTGGTAATTTTACTACAAGGGTATTTTGGTAATTTTACAACTAGAGGGTATTTCAG
TAATTTCACAAAT
Found at i:84774743 original size:27 final size:27
Alignment explanation
Indices: 84774534--84774718 Score: 214
Period size: 27 Copynumber: 6.9 Consensus size: 27
84774524 TTCTACCCTA
* **
84774534 TAGGGGTATTTTGGTAATTCTACCCTAC
1 TAGGGGTATTTTGGTAATTTTA-CAAAC
* * *
84774562 -AAGGGTATTTTGATAATTTTAC-AAG
1 TAGGGGTATTTTGGTAATTTTACAAAC
* ** * *
84774587 TCGAGGGTATTTCAGTAATTTCACACA-
1 TAG-GGGTATTTTGGTAATTTTACAAAC
*
84774614 TCAGGGGTATTTTGGTAATCTTACAAAC
1 T-AGGGGTATTTTGGTAATTTTACAAAC
84774642 TAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
84774669 TAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
84774696 TAGGGGTATTTTGGTAATTTTAC
1 TAGGGGTATTTTGGTAATTTTAC
84774719 TGATCGAGGG
Statistics
Matches: 133, Mismatches: 19, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 128 0.96
28 3 0.02
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:84774770 original size:81 final size:78
Alignment explanation
Indices: 84774510--84774770 Score: 227
Period size: 81 Copynumber: 3.2 Consensus size: 78
84774500 TAACATACAG
* * ** *
84774510 GGGTATTTCAATAATTCTACCCTATAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTT-G
1 GGGTATTTCAGTAATTTTA-CAAATAGGGGTATTTTGGTAATTTTA--CTACAAGGGTATTTTGG
** *
84774574 ATAATTTTACAAGTCGA
63 A-AATTTTACAAACCAA
* * * * *
84774591 GGGTATTTCAGTAATTTCACACATCAGGGGTATTTTGGTAATCTTACAAACTAGGGGTATTTTGG
1 GGGTATTTCAGTAATTTTACAAAT-AGGGGTATTTTGGTAATTTTAC-TAC-AAGGGTATTTTGG
* * *
84774656 TAATTTTACAAACTAG
63 AAATTTTACAAACCAA
** *
84774672 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGG
1 GGGTATTTCAGTAATTTTACAAA-TAGGGGTATTTTGGTAATTTTACT-A-CAAGGGTATTTTGG
**
84774737 AAATTTTGTAAACCAA
63 AAATTTTACAAACCAA
*
84774753 GGATATTTCAGTAATTTT
1 GGGTATTTCAGTAATTTT
84774771 GTAAATCGAG
Statistics
Matches: 142, Mismatches: 31, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
79 1 0.01
80 5 0.04
81 133 0.94
82 3 0.02
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (78 bp):
GGGTATTTCAGTAATTTTACAAATAGGGGTATTTTGGTAATTTTACTACAAGGGTATTTTGGAAA
TTTTACAAACCAA
Found at i:84774794 original size:27 final size:27
Alignment explanation
Indices: 84774772--84774892 Score: 179
Period size: 27 Copynumber: 4.5 Consensus size: 27
84774762 AGTAATTTTG
*
84774772 TAAATCGAGGGTAAAATGATAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
* *
84774799 TAAATTGAGGGTAAAACGATAATTCTG
1 TAAATCGAGGGTAAAACGATAATTCTA
* * *
84774826 TAAATCGAGGGTAAAATGGTAATTTTA
1 TAAATCGAGGGTAAAACGATAATTCTA
*
84774853 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
84774880 TAAATCGAGGGTA
1 TAAATCGAGGGTA
84774893 CTTTGGTAAT
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.29
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGATAATTCTA
Found at i:84774900 original size:27 final size:27
Alignment explanation
Indices: 84774563--84774917 Score: 175
Period size: 27 Copynumber: 13.1 Consensus size: 27
84774553 CTACCCTACA
* * * *
84774563 AGGGTATTTTGATAATTTTACAAGTCG
1 AGGGTAATTTGGTAATTTTATAAATCG
* * * *
84774590 AGGGT-ATTTCAGTAATTTCACACATC-
1 AGGGTAATTT-GGTAATTTTATAAATCG
* * * *
84774616 AGGGGTATTTTGGTAATCTTACAAA-CT
1 A-GGGTAATTTGGTAATTTTATAAATCG
* * *
84774643 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTAATTTGGTAATTTTATAAATCG
* * *
84774670 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTAATTTGGTAATTTTATAAATCG
* *
84774697 AGGGGTATTTTGGTAATTTTACT-GATCG
1 A-GGGTAATTTGGTAATTTTA-TAAATCG
* * * * *
84774725 AGGGTATTTTGGAAATTTTGTAAACCA
1 AGGGTAATTTGGTAATTTTATAAATCG
* * *
84774752 AGGAT-ATTTCAGTAATTTTGTAAATCG
1 AGGGTAATTT-GGTAATTTTATAAATCG
** * * *
84774779 AGGGTAAAATGATAATTCTATAAATTG
1 AGGGTAATTTGGTAATTTTATAAATCG
*** * * *
84774806 AGGGTAAAACGATAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTTTATAAATCG
**
84774833 AGGGTAAAATGGTAATTTTATAAATCG
1 AGGGTAATTTGGTAATTTTATAAATCG
*** *
84774860 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAATTTGGTAATTTTATAAATCG
* *
84774887 AGGGTACTTTGGTAATTTTACAAATCG
1 AGGGTAATTTGGTAATTTTATAAATCG
84774914 AGGG
1 AGGG
84774918 CACTTCAGTA
Statistics
Matches: 270, Mismatches: 49, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
26 9 0.03
27 254 0.94
28 7 0.03
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTTTATAAATCG
Found at i:84774900 original size:54 final size:54
Alignment explanation
Indices: 84774763--84774917 Score: 220
Period size: 54 Copynumber: 2.9 Consensus size: 54
84774753 GGATATTTCA
* * * *
84774763 GTAATTTTGTAAATCGAGGGTAAAATGATAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
*
84774817 ATAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
* *** *
84774871 GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAATCGAGGG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGG
84774918 CACTTCAGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
Found at i:84777497 original size:30 final size:30
Alignment explanation
Indices: 84777463--84777523 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
84777453 TCCTTAACTC
84777463 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * * *
84777493 AAACTTTTGTATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
84777523 A
1 A
84777524 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:84786774 original size:42 final size:42
Alignment explanation
Indices: 84786722--84786846 Score: 144
Period size: 42 Copynumber: 3.0 Consensus size: 42
84786712 GGTTACTGAT
* *
84786722 ATTACGTGTAAGACCATATCTGGGATATGGCATTGATATGAG
1 ATTACGTGTAAGACCATACCTGGGATATGGCATTGATACGAG
* * * *
84786764 ACTT-TGTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAG
1 A-TTACGTGTAAGACCATACCTGGGATA-TGGCATTGATACGAG
* * *
84786807 ATTACATGTAAGACCATACCTTGGATATGGCATTGGTACG
1 ATTACGTGTAAGACCATACCTGGGATATGGCATTGATACG
84786847 GTACTATGTG
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 34 0.50
43 34 0.50
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
ATTACGTGTAAGACCATACCTGGGATATGGCATTGATACGAG
Found at i:84786817 original size:43 final size:42
Alignment explanation
Indices: 84786722--84786839 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
84786712 GGTTACTGAT
* * *
84786722 ATTACGTGTAAGACCATATCTGGGATATGGCATTGATATGAG
1 ATTACGTGTAAGACCATAGCTGGGATATGGCATCGATACGAG
* *
84786764 ACTT-TGTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAG
1 A-TTACGTGTAAGACCATAGCTGGGATA-TGGCATCGATACGAG
* * *
84786807 ATTACATGTAAGACCATACCTTGGATATGGCAT
1 ATTACGTGTAAGACCATAGCTGGGATATGGCAT
84786840 TGGTACGGTA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
ATTACGTGTAAGACCATAGCTGGGATATGGCATCGATACGAG
Found at i:84789891 original size:35 final size:35
Alignment explanation
Indices: 84789845--84789912 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
84789835 AGAAAACTTA
84789845 TTTCTCCAAGTGAACACTTCGGAAAGTAACAATTG
1 TTTCTCCAAGTGAACACTTCGGAAAGTAACAATTG
84789880 TTTCTCCAAGTGAACACTTCGGAAAGTAACAAT
1 TTTCTCCAAGTGAACACTTCGGAAAGTAACAAT
84789913 ATCCGGTGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (35 bp):
TTTCTCCAAGTGAACACTTCGGAAAGTAACAATTG
Found at i:84790056 original size:38 final size:38
Alignment explanation
Indices: 84790008--84790153 Score: 157
Period size: 38 Copynumber: 3.6 Consensus size: 38
84789998 CATGTATAAC
84790008 CGTGGCATATCCACTTAGCACCATGTTACATATTTAAT
1 CGTGGCATATCCACTTAGCACCATGTTACATATTTAAT
* *
84790046 CGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAT
1 CGTGGCATATCCACTTAGCACCATG-T--T--A-C-ATAT-T-TAAT
* * *
84790093 CGTGGCATATCCACTTAGCTCCATGTTACATGTTTAAC
1 CGTGGCATATCCACTTAGCACCATGTTACATATTTAAT
*
84790131 CGTGGTATATCCACTTAGCACCA
1 CGTGGCATATCCACTTAGCACCA
84790154 CATTAATGAA
Statistics
Matches: 90, Mismatches: 9, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
38 47 0.52
39 2 0.02
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 4 0.04
46 2 0.02
47 26 0.29
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (38 bp):
CGTGGCATATCCACTTAGCACCATGTTACATATTTAAT
Found at i:84790096 original size:47 final size:47
Alignment explanation
Indices: 84790037--84790253 Score: 245
Period size: 47 Copynumber: 4.8 Consensus size: 47
84790027 ACCATGTTAC
*
84790037 ATATTTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
1 ATATGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
* * *
84790084 ATATGTAATCGTGGCATATCCACTTAGCTCCATG-T--T--A-C-AT
1 ATATGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
* * *
84790124 GT-T-TAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAAT
1 ATATGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
* * * *
84790169 ATATGTAATCGTGGCATATCCACTTGGCACCACATTACATGTATCAAT
1 ATATGTAATCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
* *
84790217 ATGTGTAATCCTGGTATATCCACTTAGCACCACGTTA
1 ATATGTAATCGTGGTATATCCACTTAGCACCACGTTA
84790254 CACGTATAAC
Statistics
Matches: 140, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
38 24 0.17
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 59 0.42
48 41 0.29
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (47 bp):
ATATGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
Found at i:84790207 original size:85 final size:85
Alignment explanation
Indices: 84790008--84790210 Score: 343
Period size: 85 Copynumber: 2.4 Consensus size: 85
84789998 CATGTATAAC
* * *
84790008 CGTGGCATATCCACTTAGCACCATGTTACATATTTAATCGTGGTATATCCACTTAGCACCACGTT
1 CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACATT
84790073 AATGAATCAATATATGTAAT
66 AATGAATCAATATATGTAAT
*
84790093 CGTGGCATATCCACTTAGCTCCATGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACATT
1 CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACATT
84790158 AATGAATCAATATATGTAAT
66 AATGAATCAATATATGTAAT
* **
84790178 CGTGGCATATCCACTTGGCACCACATTACATGT
1 CGTGGCATATCCACTTAGCACCATGTTACATGT
84790211 ATCAATATGT
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 110 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (85 bp):
CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACATT
AATGAATCAATATATGTAAT
Found at i:84790236 original size:48 final size:48
Alignment explanation
Indices: 84790133--84790260 Score: 186
Period size: 48 Copynumber: 2.7 Consensus size: 48
84790123 TGTTTAACCG
* *
84790133 TGGTATATCCACTTAGCACCACATTA-ATGAATCAATATATGTAATCG
1 TGGTATATCCACTTAGCACCACATTACATGTATCAATATATGTAATCC
* * *
84790180 TGGCATATCCACTTGGCACCACATTACATGTATCAATATGTGTAATCC
1 TGGTATATCCACTTAGCACCACATTACATGTATCAATATATGTAATCC
* *
84790228 TGGTATATCCACTTAGCACCACGTTACACGTAT
1 TGGTATATCCACTTAGCACCACATTACATGTAT
84790261 AACCATAGTA
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 24 0.34
48 47 0.66
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (48 bp):
TGGTATATCCACTTAGCACCACATTACATGTATCAATATATGTAATCC
Found at i:84790254 original size:133 final size:132
Alignment explanation
Indices: 84790037--84790287 Score: 349
Period size: 133 Copynumber: 1.9 Consensus size: 132
84790027 ACCATGTTAC
* * * *
84790037 ATATTTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAATCGTGGCATA
1 ATATGTAATCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAATCCTGGCATA
* * * * * *
84790102 TCCACTTAGCTCCATGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACATTAATGAATCA
66 TCCACTTAGCACCACGTTACACGTATAACCATAGTATATCCACTTAGCACCACATTAATGAATCA
84790167 AT
131 AT
* * * *
84790169 ATATGTAATCGTGGCATATCCACTTGGCACCACATTACATGTATCAATATGTGTAATCCTGGTAT
1 ATATGTAATCGTGGCATATCCACTTAGCACCACATTA-ATGAATCAATATATGTAATCCTGGCAT
* *
84790234 ATCCACTTAGCACCACGTTACACGTATAACCATAGTATATCCATTTAGCTCCAC
65 ATCCACTTAGCACCACGTTACACGTATAACCATAGTATATCCACTTAGCACCAC
84790288 GTTTTTTTTC
Statistics
Matches: 102, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
132 33 0.32
133 69 0.68
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (132 bp):
ATATGTAATCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAATCCTGGCATA
TCCACTTAGCACCACGTTACACGTATAACCATAGTATATCCACTTAGCACCACATTAATGAATCA
AT
Found at i:84793878 original size:27 final size:27
Alignment explanation
Indices: 84793847--84794024 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
84793837 TAAATTGTAC
84793847 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
84793874 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
84793900 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
84793928 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
84793956 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
84793983 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
84794010 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84794025 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:84793961 original size:82 final size:81
Alignment explanation
Indices: 84793848--84794003 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
84793838 AAATTGTACA
* *
84793848 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
84793912 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
84793929 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
84793994 TGCGAGTTGA
65 TGCGAATTGA
84794004 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84794015 original size:82 final size:81
Alignment explanation
Indices: 84793844--84794024 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
84793834 GATTAAATTG
* *
84793844 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
84793909 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
84793925 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
84793989 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
84794007 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
84794025 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84796508 original size:71 final size:67
Alignment explanation
Indices: 84796431--84796572 Score: 178
Period size: 67 Copynumber: 2.1 Consensus size: 67
84796421 TCACCAGATA
* * * *
84796431 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGTGAA-GCCACCAGATTACAACG
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGG-CAAGGCCACCAGATTACAACG
84796495 AGGCTGC
61 AGGCTGC
* *
84796502 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCAAGGCCACCAGATTACAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAGGCCACCAGATTACAACGAGGCT
84796567 GC
66 GC
84796569 CAGA
1 CAGA
84796573 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
66 2 0.03
67 37 0.58
71 25 0.39
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAGGCCACCAGATTACAACGAGGCT
GC
Found at i:84799070 original size:48 final size:48
Alignment explanation
Indices: 84799018--84799147 Score: 161
Period size: 48 Copynumber: 2.7 Consensus size: 48
84799008 TATCTCGGAT
*
84799018 ATGGTCTTACATGGGATCACATATTGATGCCGATGCCATGTCCTAGAC
1 ATGGTCTTACATGGGATCACATATTGATGCCGATGCCATGTCCCAGAC
* ** * * *
84799066 ATGGTCTTACAAGGGATCGTAGATTGATGCCGATGCTATGTCCCAGAG
1 ATGGTCTTACATGGGATCACATATTGATGCCGATGCCATGTCCCAGAC
* * * *
84799114 ATAGTCTTACATGGTATCAGATATTGATTCCGAT
1 ATGGTCTTACATGGGATCACATATTGATGCCGAT
84799148 AGCCCAGCTA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATTGATGCCGATGCCATGTCCCAGAC
Found at i:84810087 original size:43 final size:42
Alignment explanation
Indices: 84810030--84810170 Score: 133
Period size: 43 Copynumber: 3.3 Consensus size: 42
84810020 AGTTCTGAGG
84810030 TGTGATT-TCGTGTAAGACCATGTCTGGGACATTGGCATCGGTA
1 TGTGATTAT-GTGTAAGACCATGTCTGGGACA-TGGCATCGGTA
* * * *
84810073 TGAGATTATGTGTAAGACCCTGTCTGGGACAGAGGCATCGATA
1 TGTGATTATGTGTAAGACCATGTCTGGGACA-TGGCATCGGTA
* ** * * * *
84810116 TGTGATAACATGTAAGACCATATATGGGATATGGCAT-TGTA
1 TGTGATTATGTGTAAGACCATGTCTGGGACATGGCATCGGTA
84810157 TGTGATATATGTGT
1 TGTGAT-TATGTGT
84810171 TTCCGAGAAT
Statistics
Matches: 77, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
41 8 0.10
42 9 0.12
43 59 0.77
44 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (42 bp):
TGTGATTATGTGTAAGACCATGTCTGGGACATGGCATCGGTA
Found at i:84822125 original size:42 final size:42
Alignment explanation
Indices: 84822078--84822243 Score: 136
Period size: 48 Copynumber: 3.6 Consensus size: 42
84822068 GGTAGGATGC
* * *
84822078 CAATGCCATATCCCGGATATGCTCTTACATGGGATCACATAT
1 CAATGCCATATCCCAGACATGGTCTTACATGGGATCACATAT
*
84822120 CAATGCCGATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATCGAT
1 CAATGCC-AT---A--TCCCAGACATGGTCTTACATGGGATC--ACAT--AT
*
84822172 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAT
1 --CAATGCCATATCCCAGACATGGTCTTACATGGGATCACATAT
* *
84822216 CAATGCTGATAGCCCAG-CTATGGTCTTA
1 CAATGC-CATATCCCAGAC-ATGGTCTTA
84822244 TAAGAAATTT
Statistics
Matches: 101, Mismatches: 9, Indels: 27
0.74 0.07 0.20
Matches are distributed among these distances:
42 14 0.14
43 18 0.18
44 2 0.02
46 4 0.04
48 49 0.49
50 3 0.03
52 2 0.02
53 2 0.02
54 7 0.07
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (42 bp):
CAATGCCATATCCCAGACATGGTCTTACATGGGATCACATAT
Found at i:84822132 original size:48 final size:48
Alignment explanation
Indices: 84822074--84822221 Score: 215
Period size: 48 Copynumber: 3.1 Consensus size: 48
84822064 ACATGGTAGG
* * * *
84822074 ATGCCAATGCCATATCCCGGATATGCTCTTACATGGGATCACATATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
* ** * *
84822122 ATGCCGATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
84822170 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
84822218 ATGC
1 ATGC
84822222 TGATAGCCCA
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
Found at i:84825987 original size:48 final size:46
Alignment explanation
Indices: 84825885--84825987 Score: 125
Period size: 46 Copynumber: 2.2 Consensus size: 46
84825875 GACAGGACAG
* * * *
84825885 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGATATATAGCATTGGA
* * *
84825931 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATATCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATA-T-CAGATATATAGCATTGGA
84825979 GACAGGAAT
1 GACAGGAAT
84825988 AATTCATGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
46 25 0.52
47 1 0.02
48 22 0.46
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGATATATAGCATTGGA
Found at i:84830295 original size:46 final size:48
Alignment explanation
Indices: 84830228--84830324 Score: 135
Period size: 48 Copynumber: 2.1 Consensus size: 48
84830218 ACAGGACAAA
* *
84830228 AATGAGCCATGTAAGTCCATA-T-CAGATATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGAGACAGG
* * *
84830274 AATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGAGATAGG
1 AATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGAGACAGG
84830322 AAT
1 AAT
84830325 AATTCATGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
46 20 0.45
47 1 0.02
48 23 0.52
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (48 bp):
AATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGAGACAGG
Found at i:84833903 original size:13 final size:13
Alignment explanation
Indices: 84833885--84833911 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84833875 TTAATTTACA
84833885 TTTGTCATTATAC
1 TTTGTCATTATAC
84833898 TTTGTCATTATAC
1 TTTGTCATTATAC
84833911 T
1 T
84833912 CTGAGAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (13 bp):
TTTGTCATTATAC
Found at i:84834265 original size:17 final size:18
Alignment explanation
Indices: 84834243--84834283 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
84834233 AAAATAAAAC
* *
84834243 ATTAAAAA-TATGTTTTA
1 ATTAAAAATTATCTTTAA
84834260 ATTAAAAATTATCTTTAA
1 ATTAAAAATTATCTTTAA
84834278 ATTAAA
1 ATTAAA
84834284 TAGAGAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (18 bp):
ATTAAAAATTATCTTTAA
Found at i:84835395 original size:17 final size:17
Alignment explanation
Indices: 84835369--84835402 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
84835359 TTCTGCACGT
*
84835369 ATATGTAAAACATGAAA
1 ATATGGAAAACATGAAA
*
84835386 ATATGGAAAACTTGAAA
1 ATATGGAAAACATGAAA
84835403 TATAAAGTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.24
Consensus pattern (17 bp):
ATATGGAAAACATGAAA
Found at i:84839595 original size:6 final size:6
Alignment explanation
Indices: 84839577--84839642 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
84839567 AAGAAACATT
* *
84839577 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
*
84839626 ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAG
84839643 GTAACAGAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
5 2 0.04
6 44 0.88
7 3 0.06
8 1 0.02
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:84839622 original size:31 final size:31
Alignment explanation
Indices: 84839586--84839652 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
84839576 TATCAGAACT
* *
84839586 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
84839617 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
84839648 AGAAT
1 AGAAT
84839653 AAAAAATCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:84839844 original size:27 final size:27
Alignment explanation
Indices: 84839800--84839903 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 27
84839790 CTGCTCAGTT
* *
84839800 ATCAGATATTGTGACAGAGTCACCAG-
1 ATCAGATATTGTGGCAGAGCCACCAGA
84839826 ATCCAGATATTGTGGCAGAGCCACCAGA
1 AT-CAGATATTGTGGCAGAGCCACCAGA
* *
84839854 AT-AGATATTTGTGGCATAGCCACCAAA
1 ATCAGATA-TTGTGGCAGAGCCACCAGA
** * *
84839881 AAGAGATAATGTGGCAAAGCCAC
1 ATCAGATATTGTGGCAGAGCCAC
84839904 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
26 7 0.10
27 53 0.79
28 7 0.10
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
ATCAGATATTGTGGCAGAGCCACCAGA
Found at i:84840090 original size:22 final size:22
Alignment explanation
Indices: 84840062--84840126 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
84840052 GCAAATACGT
*
84840062 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
84840084 TTGGCACAGAGCCAT-GTGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
84840106 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
84840127 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:84840610 original size:27 final size:27
Alignment explanation
Indices: 84840553--84840738 Score: 268
Period size: 27 Copynumber: 7.0 Consensus size: 27
84840543 GGGGCAAAAT
* * * *
84840553 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
84840579 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84840606 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
84840633 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84840660 GGTAATTCTACCCTACA-TGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
84840686 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
84840713 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
84840739 AATATTTTGT
Statistics
Matches: 142, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 37 0.26
27 105 0.74
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:84840611 original size:53 final size:53
Alignment explanation
Indices: 84840553--84840738 Score: 255
Period size: 53 Copynumber: 3.5 Consensus size: 53
84840543 GGGGCAAAAT
* * * * *
84840553 GGTAATTTTACCCCACAAGGTATCTCGGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
84840606 AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-AGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
84840660 GGTAATTCTACCCTACATGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
84840713 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACA-AGGTATTT
84840739 AATATTTTGT
Statistics
Matches: 119, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
53 64 0.54
54 55 0.46
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (53 bp):
GGTAATTCTACCCTACAAGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:84840683 original size:80 final size:81
Alignment explanation
Indices: 84840553--84840738 Score: 286
Period size: 80 Copynumber: 2.3 Consensus size: 81
84840543 GGGGCAAAAT
* * * * *
84840553 GGTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCCACCCTACAGGGGTATTTCAGTAATTCTAC
84840617 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
* *
84840633 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACA-TGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCCACCCTACAGGGGTATTTCAGTAATTCTAC
*
84840697 CCTATAGGGGTATTTC
66 CCTACAGGGGTATTTC
84840713 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
84840739 AATATTTTGT
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 74 0.76
81 23 0.24
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCCACCCTACAGGGGTATTTCAGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:84840825 original size:28 final size:27
Alignment explanation
Indices: 84840776--84840913 Score: 72
Period size: 27 Copynumber: 5.1 Consensus size: 27
84840766 GTAATTCTGT
*
84840776 AAATCG-GAGGTACTTTGGTAATTTTTAC
1 AAATCGAG-GGTACTTTAGTAA-TTTTAC
* *
84840804 AAGTCGAGGGTATTTTAGTAATTTTAC
1 AAATCGAGGGTACTTTAGTAATTTTAC
* * * *
84840831 AAATCGATGGCA-TTTCA-TTATTTTGC
1 AAATCGAGGGTACTTT-AGTAATTTTAC
* *
84840857 AAA-CTGAGGGTA-TTTCGGTAATTTCAC
1 AAATC-GAGGGTACTTT-AGTAATTTTAC
* * *
84840884 AAATC-AGGGGTATTTTGGTAAATTTAC
1 AAATCGA-GGGTACTTTAGTAATTTTAC
84840911 AAA
1 AAA
84840914 CCCAGGCCAC
Statistics
Matches: 87, Mismatches: 16, Indels: 15
0.74 0.14 0.13
Matches are distributed among these distances:
25 1 0.01
26 23 0.26
27 42 0.48
28 20 0.23
29 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
AAATCGAGGGTACTTTAGTAATTTTAC
Found at i:84846075 original size:12 final size:12
Alignment explanation
Indices: 84846058--84846082 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84846048 GTAATACGAA
84846058 TGTTTTGAACGC
1 TGTTTTGAACGC
84846070 TGTTTTGAACGC
1 TGTTTTGAACGC
84846082 T
1 T
84846083 TCGATGTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (12 bp):
TGTTTTGAACGC
Found at i:84854485 original size:20 final size:23
Alignment explanation
Indices: 84854440--84854485 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 23
84854430 ATTACGAATG
*
84854440 CATACATAATAATTTATAAAACA
1 CATACATAATAATTTATAAAAAA
84854463 CATA-ATAA-AATTT-TAAAAAA
1 CATACATAATAATTTATAAAAAA
84854483 CAT
1 CAT
84854486 TAACATTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 9 0.41
21 5 0.23
22 4 0.18
23 4 0.18
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (23 bp):
CATACATAATAATTTATAAAAAA
Found at i:84856981 original size:37 final size:37
Alignment explanation
Indices: 84856922--84857059 Score: 213
Period size: 37 Copynumber: 3.7 Consensus size: 37
84856912 CGCTTAGACG
* *
84856922 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
84856959 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
84856996 TACTCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
84857033 TAATCTCCACACGTAGTCATCGGGTCT
1 AAATCTCCACACGTAGTCATCGGGTCT
84857060 CACCAAGAAT
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 93 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:84857183 original size:48 final size:48
Alignment explanation
Indices: 84857112--84857825 Score: 1088
Period size: 48 Copynumber: 14.6 Consensus size: 48
84857102 TGTTACAACA
*
84857112 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
84857160 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
84857208 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
84857256 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
84857304 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
84857352 TTCACATTAGCCATTCGGCTTTACCACATATACATATCCACATATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT-CTCATAT--ATAT
* * * *
84857403 CTCATACATATTTCA-CATTCGCCATTCGGCTTCACCACATATACATATCACACATATAT
1 -T--T-CACA-TT-AGC------CATTCGGCTTTACCACATATACATATCTCATATATAT
*
84857462 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
84857510 TTTACATTCGCCATTCGTCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
84857558 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
84857606 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
84857654 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
84857702 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
84857750 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
84857798 TTCACATTAGCCATTCGGCTTCACCACA
1 TTCACATTAGCCATTCGGCTTTACCACA
84857826 CACATATATA
Statistics
Matches: 614, Mismatches: 36, Indels: 32
0.90 0.05 0.05
Matches are distributed among these distances:
48 551 0.90
49 6 0.01
51 4 0.01
52 1 0.00
53 1 0.00
54 4 0.01
55 6 0.01
56 4 0.01
57 1 0.00
58 1 0.00
59 4 0.01
61 6 0.01
62 25 0.04
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:84857394 original size:14 final size:14
Alignment explanation
Indices: 84857375--84857403 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
84857365 TTCGGCTTTA
84857375 CCACATATACATAT
1 CCACATATACATAT
84857389 CCACATATACATAT
1 CCACATATACATAT
84857403 C
1 C
84857404 TCATACATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (14 bp):
CCACATATACATAT
Found at i:84857400 original size:62 final size:62
Alignment explanation
Indices: 84857327--84857460 Score: 214
Period size: 62 Copynumber: 2.1 Consensus size: 62
84857317 TTCGGCTTTA
* *
84857327 CCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCACCACATATACATAT
* * *
84857389 CCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATAT
1 CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCACCACATATACATAT
84857451 CACACATATA
1 C-CACATATA
84857461 TTTCACATTA
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
62 58 0.88
63 8 0.12
ACGTcount: A:0.35, C:0.29, G:0.04, T:0.31
Consensus pattern (62 bp):
CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCACCACATATACATAT
Found at i:84861701 original size:40 final size:40
Alignment explanation
Indices: 84861669--84862460 Score: 1145
Period size: 40 Copynumber: 19.8 Consensus size: 40
84861659 CCAGCATGAT
* * *
84861669 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * * * *
84861709 TGCTCTTCAGAACTTAGCACGAATATATCACTAACATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
84861749 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
84861789 TGCTCTTTGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
84861829 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
84861869 TGCTCTTTGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
84861909 TGCTCTTCGGGATTTAGCTCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
84861949 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
84861989 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
84862029 TGCTCTTCGGGATTTAGCCCGGACATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
84862069 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
84862109 TGCTCTTCGGGATTTAGCCCGGACATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
84862149 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
84862189 TGCTCTTCGGGATTTAGCCAGGACATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
84862229 TGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
84862269 TACTCTTCGAGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
84862309 TGCTCTTCGAGATTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
84862349 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
84862389 TGCTCTTCGGGACTTAGCCCGGATACA-CAACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATC-ACTAGCACGAA
* * *
84862429 TGCTCTTCGGGATTTCGCCCGGACATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
84862461 CTCAATTCTC
Statistics
Matches: 672, Mismatches: 78, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.00
40 670 1.00
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:84861966 original size:23 final size:23
Alignment explanation
Indices: 84861940--84862006 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
84861930 GATATATCAC
84861940 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
84861963 TAGCCCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
84861980 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
84862003 TAGC
1 TAGC
84862007 CCGGATACAT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 3 0.10
19 2 0.07
21 2 0.07
22 3 0.10
23 12 0.40
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:84864655 original size:27 final size:28
Alignment explanation
Indices: 84864571--84864668 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
84864561 CATGAGATTG
* * * * *
84864571 GCACTAAGTATGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
84864600 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
84864628 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
84864655 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
84864669 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.35
29 17 0.27
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:84864682 original size:29 final size:27
Alignment explanation
Indices: 84864599--84864682 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
84864589 TAAATTGTAC
* *
84864599 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
84864627 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
84864654 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
84864683 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:84872762 original size:27 final size:28
Alignment explanation
Indices: 84872678--84872775 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
84872668 CATGAGATTG
* * * *
84872678 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
84872707 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
84872735 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
84872762 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
84872776 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:84872786 original size:27 final size:27
Alignment explanation
Indices: 84872706--84872788 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
84872696 TAAATTGTAC
* *
84872706 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
84872734 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
84872761 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
84872788 A
1 A
84872789 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:84872789 original size:29 final size:27
Alignment explanation
Indices: 84872678--84872789 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
84872668 CATGAGATTG
** * *
84872678 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
84872707 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
84872735 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
84872762 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
84872790 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:84875182 original size:37 final size:37
Alignment explanation
Indices: 84875123--84875265 Score: 205
Period size: 37 Copynumber: 3.9 Consensus size: 37
84875113 AGCTCAGACG
* * *
84875123 AAATATCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
84875160 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
84875197 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
84875234 TAATCTCCACACGTAGTCATCGGGTCTCACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
84875266 AGAATATATT
Statistics
Matches: 95, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:84875222 original size:74 final size:74
Alignment explanation
Indices: 84875128--84875265 Score: 231
Period size: 74 Copynumber: 1.9 Consensus size: 74
84875118 AGACGAAATA
* * *
84875128 TCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACATGTAGTCATCGGGTCTTACCCG
1 TCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTCACCCG
84875193 GACGTACTC
66 GACGTACTC
* *
84875202 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTCACCC
1 TCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTCACCC
84875266 AGAATATATT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 59 1.00
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.24
Consensus pattern (74 bp):
TCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTCACCCG
GACGTACTC
Found at i:84875384 original size:48 final size:48
Alignment explanation
Indices: 84875313--84875928 Score: 921
Period size: 48 Copynumber: 12.8 Consensus size: 48
84875303 TGTTACAACA
84875313 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
84875361 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
84875409 TTCACATTAGCCATTTGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
84875457 TTCACATTCGCCATTCGGCTTCACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
84875505 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* ** *
84875553 TTTACATTCA-CCATTCGGCTTTACCACATATACATATAACACATATAT
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
84875601 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* ** *
84875649 TTTACATTCA-CCATTCGGCTTTACCACATATACATATAACACATATAT
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATATAT
84875697 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
84875745 TTCACATTAGCCATTCGGCTTTACACACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTAC-CACATATACATATCTCATATATAT
*
84875794 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
84875842 TTCACATTCGCCATTCGGCTTCACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
84875890 TTCACATTAGCCATTCGGCTTCACGACACATATATATAT
1 TTCACATTAGCCATTCGGCTTTAC--CACATATACATAT
84875929 TTATCTTGTA
Statistics
Matches: 511, Mismatches: 50, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
47 2 0.00
48 448 0.88
49 49 0.10
50 12 0.02
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:84878918 original size:43 final size:43
Alignment explanation
Indices: 84878864--84879291 Score: 502
Period size: 43 Copynumber: 10.0 Consensus size: 43
84878854 ATATCGTACA
* * * *
84878864 ATGCCAATGTCCTAGACGTGGTCTTACATGTAATCACATATAG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
**
84878907 ATGCCATTGTCCCAGACAG-GGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
** *
84878950 ATGCCATTGTCTCAGACAG-GGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * *
84878993 TTGCCAACGTCCCAGATGTGGTCTTACACGTAAGCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
** * * *
84879036 ATGCCAATATTCCAGACGTGGTCTTACATGTAATCATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* ** * *
84879079 ATGCCAATGTCCCAGACGCAGACTTACACGTAATCACATATGG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * * *
84879122 GTGCCAACGTCTCAGACGTGGTCTTACATGTAATCAGATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
84879165 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATCAGATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
84879208 ATGCCAACGTCCCAAACGTGG-CATTACACGTAACCACATATCG
1 ATGCCAACGTCCCAGACGTGGTC-TTACACGTAATCACATATCG
*
84879251 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
84879292 ATCATTTCAA
Statistics
Matches: 334, Mismatches: 47, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
42 2 0.01
43 330 0.99
44 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:84882569 original size:48 final size:48
Alignment explanation
Indices: 84882498--84882791 Score: 480
Period size: 48 Copynumber: 6.1 Consensus size: 48
84882488 CAAGATAAAT
* * * * *
84882498 ATATATATGTGTGGTAAAGCCGAATGTCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
84882546 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
84882594 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
84882642 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
84882690 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
84882738 ATATGTATATTTGGTAAAGCCAAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
84882786 ATATGT
1 ATATGT
84882792 GTATATTGTG
Statistics
Matches: 232, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 232 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:84882978 original size:37 final size:37
Alignment explanation
Indices: 84882928--84883030 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
84882918 GGAAATATAT
84882928 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
84882965 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
84883002 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
84883031 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:84889764 original size:38 final size:38
Alignment explanation
Indices: 84889722--84889795 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
84889712 ACTCAGCACC
84889722 ATACGTATGACCTAGCTACACTCCATCTATATTATTTA
1 ATACGTATGACCTAGCTACACTCCATCTATATTATTTA
* *
84889760 ATACGTGTGACCTAGCTACGCTCCATCTATATTATT
1 ATACGTATGACCTAGCTACACTCCATCTATATTATT
84889796 CAATCTTTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.36
Consensus pattern (38 bp):
ATACGTATGACCTAGCTACACTCCATCTATATTATTTA
Found at i:84901041 original size:27 final size:27
Alignment explanation
Indices: 84901011--84901189 Score: 216
Period size: 27 Copynumber: 6.7 Consensus size: 27
84901001 TAAATTAATT
* * *
84901011 AAATGACTATTTTACCCGTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* *
84901038 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
84901065 AAATGACTATTTTGCCCTTATAT-GTA
1 AAATGACTATTTTGCCCTTATATGGTA
* *
84901091 AAATGACTATTTTGCCTTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* * * *
84901118 AAGTCATTGTTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
*
84901145 AAATGACTATTTTTCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* * *
84901172 ATATGACTGTTTCGCCCT
1 AAATGACTATTTTGCCCT
84901190 ATGTGATGTA
Statistics
Matches: 129, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
26 24 0.19
27 105 0.81
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.42
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATATGGTA
Found at i:84901144 original size:80 final size:81
Alignment explanation
Indices: 84901011--84901179 Score: 250
Period size: 80 Copynumber: 2.1 Consensus size: 81
84901001 TAAATTAATT
* *
84901011 AAATGACTATTTTACCCGTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATT
1 AAATGACTATTTTACCCGTATGTGGTAAAATCACTGTTTTGCCCTTATATGGTAAAATGACTATT
84901076 TTGCCCTTATAT-GTA
66 TTGCCCTTATATGGTA
* ** * *
84901091 AAATGACTATTTTGCCTTTATGTGGTAAAGTCATTGTTTTGCCCTTATATGGTAAAATGACTATT
1 AAATGACTATTTTACCCGTATGTGGTAAAATCACTGTTTTGCCCTTATATGGTAAAATGACTATT
*
84901156 TTTCCCTTATATGGTA
66 TTGCCCTTATATGGTA
*
84901172 ATATGACT
1 AAATGACT
84901180 GTTTCGCCCT
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 69 0.87
81 10 0.13
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (81 bp):
AAATGACTATTTTACCCGTATGTGGTAAAATCACTGTTTTGCCCTTATATGGTAAAATGACTATT
TTGCCCTTATATGGTA
Found at i:84902669 original size:28 final size:28
Alignment explanation
Indices: 84902640--84902739 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 28
84902630 GTGATCTTTG
*
84902640 ATGAAGGAAGCCTTTGTGATAACCCCTG
1 ATGAAGGAAGCCTTTGTGATAACCCCTA
* * * * * *
84902668 ATGATGGAAGCCATTATGATGATCTCTA
1 ATGAAGGAAGCCTTTGTGATAACCCCTA
**
84902696 ATGAAGGAAGCCTTTGTGGCAACCCCTA
1 ATGAAGGAAGCCTTTGTGATAACCCCTA
84902724 ATGAAGGAAGCCTTTG
1 ATGAAGGAAGCCTTTG
84902740 AGGCGATCCT
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (28 bp):
ATGAAGGAAGCCTTTGTGATAACCCCTA
Found at i:84902824 original size:28 final size:28
Alignment explanation
Indices: 84902618--84902826 Score: 118
Period size: 28 Copynumber: 7.5 Consensus size: 28
84902608 CCAATAAATA
* * * *
84902618 GAAGCCTTTTTGGTGATCTTTGATGAAG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
* *** * * * *
84902646 GAAGCCTTTGTGATAACCCCTGATGATG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
* **
84902674 GAAGCCATTATGATGATCTCTAATGAAG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
* * * *
84902702 GAAGCCTTTGTGGCAACCCCTAATGAAG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
*
84902730 GAAGCCTTTGA-GGCGATC-CTTGA-GAAAG
1 GAAGCCTTT-ATGGCGATCTC-TAATG-AAG
* * * * *
84902758 AAAACCTTTGTGGTGATCTCTGATGAAG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
**
84902786 GTTGCCTTTATGGCGATCTCTAATGAAG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
*
84902814 GAAGCCATTATGG
1 GAAGCCTTTATGG
84902827 AAACATTTGA
Statistics
Matches: 136, Mismatches: 39, Indels: 12
0.73 0.21 0.06
Matches are distributed among these distances:
27 2 0.01
28 132 0.97
29 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (28 bp):
GAAGCCTTTATGGCGATCTCTAATGAAG
Found at i:84902908 original size:17 final size:17
Alignment explanation
Indices: 84902886--84902920 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
84902876 GCAGCTATCA
84902886 TTTGAAGGGAATGCCTT
1 TTTGAAGGGAATGCCTT
84902903 TTTGAAGGGAATGCCTT
1 TTTGAAGGGAATGCCTT
84902920 T
1 T
84902921 GTGGTAAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.11, G:0.29, T:0.37
Consensus pattern (17 bp):
TTTGAAGGGAATGCCTT
Found at i:84903306 original size:96 final size:96
Alignment explanation
Indices: 84903142--84903334 Score: 314
Period size: 96 Copynumber: 2.0 Consensus size: 96
84903132 CTACGACTAT
* ** *
84903142 ATGGTAATAGATAAGAAATCATAGAGAAGGTTAACAAAGAACATAAGCTATGGGCCGATAGGGTG
1 ATGGTAATAGATAAGAAATCATAGAAAAGGTTAACAAAGAACATAAGCTATGGAACGATAGGATG
84903207 GAAAGAAATGTATAATAACTATGACATGAAG
66 GAAAGAAATGTATAATAACTATGACATGAAG
* * *
84903238 ATGGTAATGGATAAGAAATCATATAAAAGGTTAACGAAGAACATAAGCTATGGAACGATAGGATG
1 ATGGTAATAGATAAGAAATCATAGAAAAGGTTAACAAAGAACATAAGCTATGGAACGATAGGATG
*
84903303 GAAAGAAATGTATAATGACTATGACATGAAG
66 GAAAGAAATGTATAATAACTATGACATGAAG
84903334 A
1 A
84903335 ATGAGAGTCT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 89 1.00
ACGTcount: A:0.47, C:0.08, G:0.24, T:0.21
Consensus pattern (96 bp):
ATGGTAATAGATAAGAAATCATAGAAAAGGTTAACAAAGAACATAAGCTATGGAACGATAGGATG
GAAAGAAATGTATAATAACTATGACATGAAG
Found at i:84909174 original size:12 final size:12
Alignment explanation
Indices: 84909157--84909183 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
84909147 GAAATTGGGC
84909157 CCAGCTCCAAGT
1 CCAGCTCCAAGT
84909169 CCAGCTCCAAGT
1 CCAGCTCCAAGT
84909181 CCA
1 CCA
84909184 CCAACTAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.44, G:0.15, T:0.15
Consensus pattern (12 bp):
CCAGCTCCAAGT
Found at i:84916747 original size:25 final size:25
Alignment explanation
Indices: 84916719--84916767 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
84916709 CTGTTTTAGA
*
84916719 TAGTATATCCTGAAACTACTATAGG
1 TAGTATATACTGAAACTACTATAGG
* *
84916744 TAGTATATATTGAGACTACTATAG
1 TAGTATATACTGAAACTACTATAG
84916768 ATAGACCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:84919296 original size:40 final size:39
Alignment explanation
Indices: 84919236--84919328 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 39
84919226 ATCGGTATCG
** *
84919236 CACACTTAGTGCCTCATATAGCCGAAGTTATTCCAATTCA
1 CACACTTAGTG-CTCATATAGCCGAAACTATTCCAAATCA
* * *
84919276 CACACTTAGTGCT-ATTTATAGCTGAAACTATTTCAAATCG
1 CACACTTAGTGCTCA--TATAGCCGAAACTATTCCAAATCA
84919316 CACACTTAGTGCT
1 CACACTTAGTGCT
84919329 GAACATAGTC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 42 0.93
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (39 bp):
CACACTTAGTGCTCATATAGCCGAAACTATTCCAAATCA
Found at i:84925419 original size:22 final size:22
Alignment explanation
Indices: 84925391--84925446 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
84925381 TATTTTTTAT
84925391 TTTTTATTTTTATTA-AAATTA
1 TTTTTATTTTTATTAGAAATTA
**
84925412 CTTTTTATTTTTATTAGATTTTA
1 -TTTTTATTTTTATTAGAAATTA
84925435 TTTTTATTTTTA
1 TTTTTATTTTTA
84925447 ATTATCAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 27 0.87
23 4 0.13
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTTATTTTTATTAGAAATTA
Found at i:84925427 original size:16 final size:16
Alignment explanation
Indices: 84925408--84925442 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
84925398 TTTTATTAAA
*
84925408 ATTACTTTTTATTTTT
1 ATTACATTTTATTTTT
*
84925424 ATTAGATTTTATTTTT
1 ATTACATTTTATTTTT
84925440 ATT
1 ATT
84925443 TTTAATTATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (16 bp):
ATTACATTTTATTTTT
Found at i:84952876 original size:26 final size:26
Alignment explanation
Indices: 84952843--84952894 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
84952833 AATGGTAGTT
84952843 AAATGTTA-AATTTATATGCTGTTATG
1 AAATGTTAGAATTTATAT-CTGTTATG
*
84952869 AAATGTTAGAATTTATATTTGTTATG
1 AAATGTTAGAATTTATATCTGTTATG
84952895 TCAGAATATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (26 bp):
AAATGTTAGAATTTATATCTGTTATG
Found at i:84956106 original size:23 final size:23
Alignment explanation
Indices: 84956076--84956121 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
84956066 CCCATCTTGT
84956076 CGAAATCCCTTGTTGCCAATTGC
1 CGAAATCCCTTGTTGCCAATTGC
84956099 CGAAATCCCTTGTTGCCAATTGC
1 CGAAATCCCTTGTTGCCAATTGC
84956122 TGAATCTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.30
Consensus pattern (23 bp):
CGAAATCCCTTGTTGCCAATTGC
Found at i:84961120 original size:17 final size:17
Alignment explanation
Indices: 84961082--84961122 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
84961072 AGAGCTCCAA
*
84961082 CGAGCTTCCAAACTGGT
1 CGAGCTTCCAAACTGAT
84961099 CGAGCTTCCAAACTGAT
1 CGAGCTTCCAAACTGAT
*
84961116 TGAGCTT
1 CGAGCTT
84961123 TTGATTATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (17 bp):
CGAGCTTCCAAACTGAT
Found at i:84965234 original size:43 final size:43
Alignment explanation
Indices: 84965186--84965284 Score: 137
Period size: 43 Copynumber: 2.3 Consensus size: 43
84965176 CCAGAATTGA
* *
84965186 TCTTACATATTATCAC-ATATCGATGCCAATGTCCCAAACATGG
1 TCTTACATATAATCACAATA-CAATGCCAATGTCCCAAACATGG
* *
84965229 TCTTACATGTAATCACAATACAATGCCAATGTCCCAGACATGG
1 TCTTACATATAATCACAATACAATGCCAATGTCCCAAACATGG
*
84965272 TCTTACATGTAAT
1 TCTTACATATAAT
84965285 TACATCTCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 48 0.94
44 3 0.06
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.30
Consensus pattern (43 bp):
TCTTACATATAATCACAATACAATGCCAATGTCCCAAACATGG
Found at i:84967459 original size:47 final size:45
Alignment explanation
Indices: 84967313--84967486 Score: 178
Period size: 47 Copynumber: 3.8 Consensus size: 45
84967303 TACGCGTACT
* **
84967313 GATGCATGTCCCATACATGTCTTACACTAGCAAAAT-TCT-TAGCC
1 GATGCATGTCCCAGACATGTCTTACACT-GCACTATCTCTGTAGCC
* *
84967357 GATGCATGTCCTAGACACGTCTTACACTG-ACTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGCACTATCTCTGT--A-GCC
84967404 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGT-GCC
1 GATGCATGTCCCAGACATGTCTTACACT-GCACT-ATCTCTGTAGCC
* *
84967450 AATGCCATGTCCCAGACATGGTCTTACAATG-ACTATC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGCACTATC
84967487 ATAGTATGGC
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 26 0.23
45 3 0.03
46 10 0.09
47 44 0.40
48 10 0.09
49 3 0.03
50 8 0.07
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGCACTATCTCTGTAGCC
Found at i:84967506 original size:47 final size:45
Alignment explanation
Indices: 84967313--84967507 Score: 141
Period size: 47 Copynumber: 4.2 Consensus size: 45
84967303 TACGCGTACT
* **
84967313 GATGCATGTCCCATACATGTCTTACACTAGCAAAATTC-T-TA--GCC
1 GATGCATGTCCCAGACATGTCTTACACT-G-ACTA-TCATGTATGGCC
* * *
84967357 GATGCATGTCCTAGACACGTCTTACACTGACTATCTCTGTCGA-GGCC
1 GATGCATGTCCCAGACATGTCTTACACTGACTATC-ATGT--ATGGCC
* * *
84967404 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCTCTGTGCC
1 GATGCATGTCCCAGACATGTCTTACACTGACTA-TCATGTATG-GCC
* * *
84967450 AATGCCATGTCCCAGACATGGTCTTACAATGACTATCATAGTATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTATCAT-GTATGGCC
84967498 GATGCATGTC
1 GATGCATGTC
84967508 TTACACTAGC
Statistics
Matches: 120, Mismatches: 18, Indels: 23
0.75 0.11 0.14
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 2 0.02
44 26 0.22
45 1 0.01
46 10 0.08
47 53 0.44
48 20 0.17
49 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTATCATGTATGGCC
Found at i:84967572 original size:83 final size:83
Alignment explanation
Indices: 84967419--84967590 Score: 202
Period size: 83 Copynumber: 2.1 Consensus size: 83
84967409 ATGTCCCAGA
* * * * * *
84967419 CATGTCTTACACTGGCACTCATCTCTGTGCCAATGCCATGTCCCAGACATGGTCTTACAATGACT
1 CATGTCTTACACTAGCACACATCTCGGTGCCAATGCCATGCCCCAGACATGGTCCTACAACGACT
* * *
84967484 ATCATAGTATGGCTGATG
66 ATCATAATATGGCCGAAG
* * * *
84967502 CATGTCTTACACTAGCACACGTCT-GGATGCCGATGCCATGCCCCAGACATGGTCCTACACCGGC
1 CATGTCTTACACTAGCACACATCTCGG-TGCCAATGCCATGCCCCAGACATGGTCCTACAACGAC
*
84967566 TCTCATAATATGGCCGAAG
65 TATCATAATATGGCCGAAG
84967585 CATGTC
1 CATGTC
84967591 CCAGACATAT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
82 1 0.01
83 73 0.99
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (83 bp):
CATGTCTTACACTAGCACACATCTCGGTGCCAATGCCATGCCCCAGACATGGTCCTACAACGACT
ATCATAATATGGCCGAAG
Found at i:84975011 original size:47 final size:45
Alignment explanation
Indices: 84974904--84975119 Score: 176
Period size: 47 Copynumber: 4.7 Consensus size: 45
84974894 TAAGCGTGCT
* * *
84974904 GATGCATGTCCTAGACAT-GTCTTACACTAGCACAACTCT-TAGCC
1 GATGCATGTCCCAGACATCGTCTTACACTAGC-TATCTCTGTAGCC
* *
84974948 GATACATGTCCCAGACA-CGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATCGTCTTACACTAGCTATCTCTGT--A-GCC
* *
84974995 GATGCATGTCCTAGACATC-TCTTACACTGGCACTCATCTCTGT-GCC
1 GATGCATGTCCCAGACATCGTCTTACACTAG--CT-ATCTCTGTAGCC
* * **
84975041 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-AGTATGGTT
1 GATG-CATGTCCCAGACATCGTCTTACACTAGCTATC-TCTGTA--GCC
*
84975089 GATGCATGTCCCAGACAT-GTTTTACACTAGC
1 GATGCATGTCCCAGACATCGTCTTACACTAGC
84975120 CCTTGTCTAG
Statistics
Matches: 143, Mismatches: 14, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
43 5 0.03
44 28 0.20
45 5 0.03
46 23 0.16
47 56 0.39
48 16 0.11
49 2 0.01
50 8 0.06
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATCGTCTTACACTAGCTATCTCTGTAGCC
Found at i:84975018 original size:91 final size:94
Alignment explanation
Indices: 84974904--84975077 Score: 248
Period size: 91 Copynumber: 1.9 Consensus size: 94
84974894 TAAGCGTGCT
*
84974904 GATGCATGTCCTAGACATGTCTTACACTAGCA-CAACTCT-TAGCCGAT-ACATGTCCCAGACA-
1 GATGCATGTCCTAGACATCTCTTACACTAGCACCAACTCTGT-GCCGATGACATGTCCCAGACAT
*
84974965 CGTCTTACACTGGCTATCTCTGTCGAGGCC
65 CGTCTTACACTAGCTATCTCTGTCGAGGCC
* * *
84974995 GATGCATGTCCTAGACATCTCTTACACTGGCACTCATCTCTGTGCCGATGCCATGTCCCAGACAT
1 GATGCATGTCCTAGACATCTCTTACACTAGCAC-CAACTCTGTGCCGATGACATGTCCCAGACAT
*
84975060 GGTCTTACACTAGCTATC
65 CGTCTTACACTAGCTATC
84975078 ATAGTATGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
91 30 0.42
93 12 0.17
94 14 0.19
95 16 0.22
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (94 bp):
GATGCATGTCCTAGACATCTCTTACACTAGCACCAACTCTGTGCCGATGACATGTCCCAGACATC
GTCTTACACTAGCTATCTCTGTCGAGGCC
Found at i:84975114 original size:94 final size:92
Alignment explanation
Indices: 84974850--84975174 Score: 313
Period size: 94 Copynumber: 3.5 Consensus size: 92
84974840 TGGGATATAT
* *
84974850 TGCCGTTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TAAGCGTGCTGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGT-AG-GT--TGATGCATGTC
*
84974914 CTAGACATGTCTTACACTAGCA-CAACTCT-
62 CTAGACATGTCTTACACTAGCACCATCTCTG
* * * **
84974943 TAGCCGAT-ACATGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGAGGCCGATGCATGTC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--AGGTTGATGCATGTC
* *
84975005 CTAGACATCTCTTACACTGGCACTCATCTCTG
62 CTAGACATGTCTTACACTAGCAC-CATCTCTG
* *
84975037 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTATGGTTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA-GGTTGATGCATGTCCTA
* * *
84975102 GACATGTTTTACACTAGC-CCTTGTCTAG
65 GACATGTCTTACACTAGCACCATCTCT-G
* * ** *
84975130 ATACCGATGCCATGCCCCAGACATAATCTTACACTGGCTCTCATA
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATA
84975175 ATGTGGCCGA
Statistics
Matches: 190, Mismatches: 29, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
91 31 0.16
92 21 0.11
93 31 0.16
94 88 0.46
95 18 0.09
96 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTAGGTTGATGCATGTCCTAG
ACATGTCTTACACTAGCACCATCTCTG
Found at i:84975208 original size:94 final size:94
Alignment explanation
Indices: 84975039--84975210 Score: 211
Period size: 94 Copynumber: 1.8 Consensus size: 94
84975029 CATCTCTGTG
* ** * ** *
84975039 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTATGGTTGATGCATGTCCCAGA
1 CCGATGCCATGCCCCAGACATAATCTTACACTAGCTATCATAATATGGCCGAAGCATGTCCCAGA
* *
84975104 CATGTTTTACACTAGCCCTTGTCTAGATA
66 CACGTCTTACACTAGCCCTTGTCTAGATA
* * *
84975133 CCGATGCCATGCCCCAGACATAATCTTACACTGGCTCTCATAATGTGGCCGAAGCATG-CCACAG
1 CCGATGCCATGCCCCAGACATAATCTTACACTAGCTATCATAATATGGCCGAAGCATGTCC-CAG
*
84975197 GCACGTCTTACACT
65 ACACGTCTTACACT
84975211 GGCGCACAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
93 2 0.03
94 62 0.97
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (94 bp):
CCGATGCCATGCCCCAGACATAATCTTACACTAGCTATCATAATATGGCCGAAGCATGTCCCAGA
CACGTCTTACACTAGCCCTTGTCTAGATA
Found at i:84980002 original size:47 final size:47
Alignment explanation
Indices: 84979948--84980330 Score: 561
Period size: 47 Copynumber: 8.1 Consensus size: 47
84979938 TTAGGATTTT
** * *
84979948 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
84979995 ATGTGATGAATGTGAACATGCATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATA--TGTGATAAGGCCGAATGGCCA
* *
84980044 ATGTGACGAATGTGAATATGCATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATA--TGTGATAAGGCCGAATGGCCA
*
84980093 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
84980140 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
84980187 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
84980234 ATGTGATGAATGTGAACATGCATATATATGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
84980281 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
84980328 ATG
1 ATG
84980331 CGAAATGTGT
Statistics
Matches: 309, Mismatches: 24, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
47 215 0.70
48 3 0.01
49 91 0.29
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:84980360 original size:46 final size:46
Alignment explanation
Indices: 84980304--84980440 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
84980294 GGAAGTGTAT
84980304 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
84980350 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * **
84980396 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATACGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
84980441 TGTATATATA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Done.