Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 266 of 325
Found at i:84982236 original size:40 final size:40
Alignment explanation
Indices: 84981931--84982246 Score: 470
Period size: 40 Copynumber: 7.9 Consensus size: 40
84981921 GTTATATATG
* *
84981931 ATCCGGGCTAAGTCCCAAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
84981971 ATCCGGGCTAAGTCCCGAAGAGCATGCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
84982011 ATCCGGGCTAAGTCTCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * *
84982051 ATCTGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
84982091 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
84982131 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * * *
84982171 ATCAGGGTTAAGTCCCAAAGAGCATTCGTACTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
84982211 ATCCGGGCTAAGTCCCGAAGAGCATTCATGTTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
84982247 ATGTGTATTC
Statistics
Matches: 252, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 252 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:84982460 original size:25 final size:25
Alignment explanation
Indices: 84982410--84982462 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
84982400 TGTATAACAA
* *
84982410 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
84982435 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
84982460 CAA
1 CAA
84982463 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:84985377 original size:40 final size:40
Alignment explanation
Indices: 84985322--84985545 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
84985312 TATTCGGATG
84985322 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
84985362 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
84985405 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
84985445 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
84985485 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
**
84985525 ATATCC-GGCTAAAACCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
84985546 ATACTTGGGT
Statistics
Matches: 166, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 14 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:84985465 original size:83 final size:80
Alignment explanation
Indices: 84985326--84985545 Score: 293
Period size: 83 Copynumber: 2.7 Consensus size: 80
84985316 CGGATGATAT
* **
84985326 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
84985391 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
84985409 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
84985474 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * **
84985489 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAAACCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
84985546 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
79 15 0.12
80 45 0.36
81 2 0.02
83 64 0.51
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:84989684 original size:47 final size:47
Alignment explanation
Indices: 84989630--84990012 Score: 579
Period size: 47 Copynumber: 8.1 Consensus size: 47
84989620 TTAGGATTTT
** * *
84989630 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
84989677 ATGTGATGAATATGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
84989724 ATGTGATGAATGTGAACATGCATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATA--TGTGATAAGGCCGAATGGCCA
84989773 ATGTGATGAATGTGAACATGCATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATA--TGTGATAAGGCCGAATGGCCA
*
84989822 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
84989869 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
84989916 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
84989963 ATGTGATGAACGTAGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
84990010 ATG
1 ATG
84990013 CGAAATGTGT
Statistics
Matches: 313, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 214 0.68
48 3 0.01
49 96 0.31
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:84989887 original size:192 final size:188
Alignment explanation
Indices: 84989630--84990012 Score: 624
Period size: 192 Copynumber: 2.0 Consensus size: 188
84989620 TTAGGATTTT
** *
84989630 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
*
84989695 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGTGATAA
66 TGCATATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATA--TGTGATAA
* *
84989760 GGCCGAATGGCCAATGTGATGAATGT-GAACATGCATATATGTGTGATAAGGCCGAATGGCCA
129 GGCCGAATGGCCAATGTGATGAACGTAGAA-ATGCATATATGTG-G-TAAAGCCGAATGGCCA
*
84989822 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
84989887 TGCATATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
* * *
84989952 CCGAATGGCCAATGTGATGAACGTAGAAGTGTATATATGTGGTAAAGCCGAATGGCTA
131 CCGAATGGCCAATGTGATGAACGTAGAAATGCATATATGTGGTAAAGCCGAATGGCCA
84990010 ATG
1 ATG
84990013 CGAAATGTGT
Statistics
Matches: 180, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
188 17 0.09
189 1 0.01
190 44 0.24
191 3 0.02
192 115 0.64
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (188 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
TGCATATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
CCGAATGGCCAATGTGATGAACGTAGAAATGCATATATGTGGTAAAGCCGAATGGCCA
Found at i:84990042 original size:46 final size:46
Alignment explanation
Indices: 84989986--84990122 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
84989976 AGAAGTGTAT
84989986 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
84990032 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * **
84990078 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATACGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
84990123 TGTATATATA
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:84995520 original size:25 final size:25
Alignment explanation
Indices: 84995472--84995529 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
84995462 ATAAAACCTA
*
84995472 AAAATGAAATAGTATTAAAGGAAGAT
1 AAAAT-AAAAAGTATTAAAGGAAGAT
84995498 AAAATAAAAAGTATTCAAA-GAAGAT
1 AAAATAAAAAGTATT-AAAGGAAGAT
84995523 -AAATAAA
1 AAAATAAA
84995530 GATAAAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 7 0.23
25 15 0.50
26 8 0.27
ACGTcount: A:0.64, C:0.02, G:0.14, T:0.21
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAAGGAAGAT
Found at i:85000022 original size:19 final size:19
Alignment explanation
Indices: 84999998--85000043 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
84999988 CTTTCTTTCC
84999998 TTTGCATT-CATCACATGCA
1 TTTGCATTGCATCACAT-CA
**
85000017 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATCACATCA
85000036 TTTGCATT
1 TTTGCATT
85000044 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATCACATCA
Found at i:85003960 original size:22 final size:23
Alignment explanation
Indices: 85003929--85003973 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
85003919 TAAGAGCATT
85003929 TAATTCATTTCATCAT-AGCATCA
1 TAATTCATTTCA-CATAAGCATCA
*
85003952 TAATT-ATTTGACATAAGCATCA
1 TAATTCATTTCACATAAGCATCA
85003974 CATCTAGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 3 0.15
22 12 0.60
23 5 0.25
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (23 bp):
TAATTCATTTCACATAAGCATCA
Found at i:85003965 original size:63 final size:63
Alignment explanation
Indices: 85003846--85004014 Score: 275
Period size: 63 Copynumber: 2.7 Consensus size: 63
85003836 CATTCATAAT
* *
85003846 ACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATC
1 ACATCTAGTTAGGAGCATTTAATTCATTTC-ATCATAGCATCATAATTATTTGACATAAGCATC
* *
85003910 ACATCTAGGTAAGAGCATTTAATTCATTTCATCATAGCATCATAATTATTTGACATAAGCATC
1 ACATCTAGTTAGGAGCATTTAATTCATTTCATCATAGCATCATAATTATTTGACATAAGCATC
*
85003973 ACATCTAGTTAGGAGCATTTAATTCATTTTGATCATAGCATC
1 ACATCTAGTTAGGAGCATTTAATTCA-TTTCATCATAGCATC
85004015 CTAGTCATTT
Statistics
Matches: 97, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
63 56 0.58
64 41 0.42
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (63 bp):
ACATCTAGTTAGGAGCATTTAATTCATTTCATCATAGCATCATAATTATTTGACATAAGCATC
Found at i:85004274 original size:44 final size:44
Alignment explanation
Indices: 85004225--85004455 Score: 116
Period size: 44 Copynumber: 5.3 Consensus size: 44
85004215 GGCCTTAACC
*
85004225 CCCTAAATAGTAGGGTAACAGGCTGAATATTGTAGATCTTGTCT
1 CCCTAAATAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCT
* * ** ** * * ** *
85004269 CCCTAAACAGTAGTGG-AGCA-AATCGAAGAAGGAAG-CCTTAACC
1 CCCTAAATAGTAG-GGTAACAGGCT-GAAGATTGTAGATCTTGTCT
* * *
85004312 CCCTAAGTAGTAGCGTAACAGGCTAAAGATTGTAGATCTTGTCT
1 CCCTAAATAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCT
* ** * * * ** *
85004356 CCCTAAATAGTAGTGG-AGCA-AATCGAAGA-AGCA-AGCCTTAACC
1 CCCTAAATAGTAG-GGTAACAGGCT-GAAGATTGTAGA-TCTTGTCT
* *
85004399 CCCTAAATAATAGGGTAACAGGCTAAAGATTGTAGATCTTGTCT
1 CCCTAAATAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCT
* *
85004443 TCCTAAACAGTAG
1 CCCTAAATAGTAG
85004456 TAGAGCAAAT
Statistics
Matches: 123, Mismatches: 52, Indels: 24
0.62 0.26 0.12
Matches are distributed among these distances:
42 4 0.03
43 52 0.42
44 63 0.51
45 4 0.03
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (44 bp):
CCCTAAATAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCT
Found at i:85004274 original size:87 final size:87
Alignment explanation
Indices: 85004119--85004760 Score: 781
Period size: 87 Copynumber: 7.4 Consensus size: 87
85004109 GTAGTAGATA
* * *
85004119 GAAGAAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACA-GCTGAAGATTGTAGATATTGTCTT
1 GAAG-AAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATCTTGTCTC
*
85004183 CCTAAACAATAGTGGAGCAAATC
65 CCTAAACAGTAGTGGAGCAAATC
** * * * *
85004206 GAAGAAATAGGCCTTAACCCCCTAAATAGTAGGGTAACAGGCTGAATATTGTAGATCTTGTCTCC
1 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATCTTGTCTCC
85004271 CTAAACAGTAGTGGAGCAAATC
66 CTAAACAGTAGTGGAGCAAATC
* *
85004293 GAAGAAGGAAGCCTTAACCCCCTAAGTAGTAGCGTAACAGGCTAAAGATTGTAGATCTTGTCTCC
1 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATCTTGTCTCC
*
85004358 CTAAATAGTAGTGGAGCAAATC
66 CTAAACAGTAGTGGAGCAAATC
* * *
85004380 GAAGAAGCAAGCCTTAACCCCCTAAATAATAGGGTAACAGGCTAAAGATTGTAGATCTTGTCTTC
1 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATCTTGTCTCC
*
85004445 CTAAACAGTAGTAGAGCAAATC
66 CTAAACAGTAGTGGAGCAAATC
*
85004467 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATCTTCTCTCC
1 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATCTTGTCTCC
* *
85004532 CTAATCAATAGTGGAGCAAATC
66 CTAAACAGTAGTGGAGCAAATC
* * *
85004554 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGTGTAACAGGCTAAAGATTGCAAATCTTGTCTCC
1 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATCTTGTCTCC
* * * ** *
85004619 CTGAAGCTGAAGTGGAATAGATC
66 CT-AAACAGTAGTGGAGCAAATC
* * ** * * * * * *
85004642 AAAGACGGTGAGCCTTGACCCCCTAAGCAGTAGGGT-ACAAGGCT-GA-ATTATTGATCTTATCT
1 GAAGA-AGCAAGCCTTAACCCCCTAAGTAGTAGGGTAAC-AGGCTAAAGATTGTAGATCTTGTCT
** * **
85004704 CCCTAAGTAGTAGTTGAGCGGATC
64 CCCTAAACAGTAGTGGAGCAAATC
* *
85004728 AAAGATTGTCAA-CCTTAACCCCCTAAGTAGTAG
1 GAAGA-AG-CAAGCCTTAACCCCCTAAGTAGTAG
85004761 TGGACCAAGT
Statistics
Matches: 483, Mismatches: 67, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
86 69 0.14
87 365 0.76
88 20 0.04
89 29 0.06
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (87 bp):
GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATCTTGTCTCC
CTAAACAGTAGTGGAGCAAATC
Found at i:85004324 original size:43 final size:43
Alignment explanation
Indices: 85004269--85004407 Score: 109
Period size: 43 Copynumber: 3.2 Consensus size: 43
85004259 GATCTTGTCT
*
85004269 CCCTAAACAGTAGTGGAGCAAATCGAAGAAGGAAGCCTTAACC
1 CCCTAAATAGTAGTGGAGCAAATCGAAGAAGGAAGCCTTAACC
* * * * ** * ** * * ** *
85004312 CCCTAAGTAGTAGCGTAAC-AGGCTAAAGATTGTAGATCTTGTCT
1 CCCTAAATAGTAGTGGAGCAAATC-GAAGAAGGAAG-CCTTAACC
*
85004356 CCCTAAATAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTAACC
1 CCCTAAATAGTAGTGGAGCAAATCGAAGAAGGAAGCCTTAACC
85004399 CCCTAAATA
1 CCCTAAATA
85004408 ATAGGGTAAC
Statistics
Matches: 63, Mismatches: 30, Indels: 6
0.64 0.30 0.06
Matches are distributed among these distances:
42 2 0.03
43 34 0.54
44 25 0.40
45 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (43 bp):
CCCTAAATAGTAGTGGAGCAAATCGAAGAAGGAAGCCTTAACC
Found at i:85004923 original size:44 final size:44
Alignment explanation
Indices: 85004875--85005016 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 44
85004865 ACCATTCGTA
*
85004875 TCTCCTTGAAGTTTCAGCAGAGTAGATCGAAGCTACAAACCTCT
1 TCTCCTTGAAGTTTCAGCAGAGTAGATCGAAGCTACAAATCTCT
* ** * * * *
85004919 TCTCCTTGAAATGGCATTG-A-AGCAGCTCGAAGCCACAATTCT-T
1 TCTCCTTGAAGTTTCA--GCAGAGTAGATCGAAGCTACAAATCTCT
* * * *
85004962 ATCTCATTGAAGTTTCAGCGGAGTAAATCAAAGCTACAAATCTCT
1 -TCTCCTTGAAGTTTCAGCAGAGTAGATCGAAGCTACAAATCTCT
*
85005007 TCTCCCTGAA
1 TCTCCTTGAA
85005017 ATTATAATAG
Statistics
Matches: 71, Mismatches: 21, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 66 0.93
45 2 0.03
46 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (44 bp):
TCTCCTTGAAGTTTCAGCAGAGTAGATCGAAGCTACAAATCTCT
Found at i:85004935 original size:88 final size:86
Alignment explanation
Indices: 85004786--85005018 Score: 313
Period size: 88 Copynumber: 2.6 Consensus size: 86
85004776 TCAATAGCAG
* ** *
85004786 ATCTCCTTGAAGTTTCAGCGGAGTAGATCAAGGCTACAAATCTCCTCTCCCCAGAATGGCATTGG
1 ATCTCCTTGAAGTTTCAGCGGAGTAGATCAA-GCTACAAATCTCTTCTCCTGA-AATGGCATTGA
* *
85004851 AGCGGCTCGAAGCCACCATTCGT
64 AGCAGCTCGAAGCCACAATTCGT
* *
85004874 ATCTCCTTGAAGTTTCAGCAGAGTAGATCGAAGCTACAAACCTCTTCTCCTTGAAATGGCATTGA
1 ATCTCCTTGAAGTTTCAGCGGAGTAGATC-AAGCTACAAATCTCTTCTCC-TGAAATGGCATTGA
*
85004939 AGCAGCTCGAAGCCACAATTCTT
64 AGCAGCTCGAAGCCACAATTCGT
* *
85004962 ATCTCATTGAAGTTTCAGCGGAGTAAATCAAAGCTACAAATCTCTTCTCCCTGAAAT
1 ATCTCCTTGAAGTTTCAGCGGAGTAGATC-AAGCTACAAATCTCTTCT-CCTGAAAT
85005019 TATAATAGAA
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
88 123 0.96
89 5 0.04
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (86 bp):
ATCTCCTTGAAGTTTCAGCGGAGTAGATCAAGCTACAAATCTCTTCTCCTGAAATGGCATTGAAG
CAGCTCGAAGCCACAATTCGT
Found at i:85012710 original size:13 final size:12
Alignment explanation
Indices: 85012692--85012721 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
85012682 AAATAAAGGG
85012692 GTTAATTAGTTTA
1 GTTAATTAG-TTA
85012705 GTTAATTAGTTA
1 GTTAATTAGTTA
85012717 GTTAA
1 GTTAA
85012722 AATGATCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (12 bp):
GTTAATTAGTTA
Found at i:85016975 original size:627 final size:626
Alignment explanation
Indices: 85015783--85017039 Score: 2316
Period size: 627 Copynumber: 2.0 Consensus size: 626
85015773 AGTTCTTGGG
* * * *
85015783 TAAGTCCAGTGCAGGTTGTTCTTAAGAAAGGAGACATGACTGTGGTAGCCAATGAGAAGACTGAA
1 TAAGTCCAGTACAGGTTATTCCTAAGAAAGGAGACATGACTGTGGTAGCCAATGAGAAGAATGAA
**
85015848 CTAATTCCAACTAGAACAGTCACAGGTTGGAGATTTTGCATTGAATATAGGAAGCTAAATGATGC
66 CTAATTCCAACTAGAACAGTCACAGGTTGGAGAGATTGCATTGAATATAGGAAGCTAAATGATGC
* *
85015913 CACAAGGAAAGATCACTTCCCCTTGCCATTCATTGACCAAATGTTGGAAAACCTATCAGGGCACA
131 CACAAGGAAAGATCACTTCCCCTTGCCATTCATTGACCAAATGTTGGAAAAACTATCAGCGCACA
*
85015978 TGTACTACTGCTTGTTAGACGGATTATATGGCTATTTTCAAATCCCAATAGCTCCTGAAGATCAG
196 TGTACTACTGCTTCTTAGACGGATTATATGGCTATTTTCAAATCCCAATAGCTCCTGAAGATCAG
85016043 GAAAAAAATGACATTCACATGTCCATACGGTACATTTGCTTATCGAAGAATGCCCTTTGGATTAT
261 GAAAAAAATGACATTCACATGTCCATACGGTACATTTGCTTATCGAAGAATGCCCTTTGGATTAT
* * *
85016108 GTAATGCTTCTGCTACATTCCAGCGCTGTATGATGGCCATCTTTGATGAACTTGTAGTAGATATC
326 GTAATGCTCCTGCTACATTCCAGCGCTGTATGATGACCATCTTTGACGAACTTGTAGTAGATATC
*
85016173 ATGGAGGTATTTATGGATGATTTCTCGGTATTTGGTAACTCTATCCATCTTTGCCTTAAATTTTT
391 ATGGAGGTATTTATGGATGATTTCTCGGTATTTGGTAACTCTATCCATCTTTGCCTTAAAATTTT
*
85016238 AAAACGAGTTCTAATAAGATGTGAAGAAATGAACCTTGTACTTAATTGGGAAAAATGTCACTTTA
456 AAAACGAGTTCTAATAAGATGTGAAGAAATGAACCTTGTACTTAACTGGGAAAAATGTCACTTTA
* *
85016303 TGGTTCAAGAAGGTATTGTGTTAGGACATAAAATTTCTAGTAAAGGCATTGGGGTTGATAAATCT
521 TGGTTCAAGAAGGTATTGTGCTAGGACATAAAATTTCTAGTAAAGGCATTGAGGTTGATAAATCT
85016368 AAAGTCAAAATCATTGAAAAATTACCTCCTCCTAGTTCGGT
586 AAAGTCAAAATCATTGAAAAATTACCTCCTCCTAGTTCGGT
85016409 TAAGTCCAGTACAGGTTATTCCTAAGAAAGGAGACATGACTGTGGTAGCCAATGAGAAGAATGAA
1 TAAGTCCAGTACAGGTTATTCCTAAGAAAGGAGACATGACTGTGGTAGCCAATGAGAAGAATGAA
85016474 CTAATTCCAACTAGAACAGTCACAGGTTGGAGAGATTGCATTGAATATAGGAAGCTAAATGATGC
66 CTAATTCCAACTAGAACAGTCACAGGTTGGAGAGATTGCATTGAATATAGGAAGCTAAATGATGC
85016539 CACAAGGAAAGATCACTTCCCCTTGCCATTCATTGACCAAATGTTGGAAAAACTATCAGCGCACA
131 CACAAGGAAAGATCACTTCCCCTTGCCATTCATTGACCAAATGTTGGAAAAACTATCAGCGCACA
*
85016604 TGTACTACTGCTTCTTAGACGGATTATCTGGCTATTTTCAAATCCCAATAGCTCCTGAAGATCAG
196 TGTACTACTGCTTCTTAGACGGATTATATGGCTATTTTCAAATCCCAATAGCTCCTGAAGATCAG
*
85016669 GAAAAAAAATGACATTCACATGTCCATACTGTACATTTGCTTATCGAAGAATGCCCTTTGGATTA
261 G-AAAAAAATGACATTCACATGTCCATACGGTACATTTGCTTATCGAAGAATGCCCTTTGGATTA
85016734 TGTAATGCTCCTGCTACATTCCAGCGCTGTATGATGACCATCTTTGACGAACTTGTAGTAGATAT
325 TGTAATGCTCCTGCTACATTCCAGCGCTGTATGATGACCATCTTTGACGAACTTGTAGTAGATAT
85016799 CATGGAGGTATTTATGGATGATTTCTCGGTATTTGGTAACTCTATCCATCTTTGCCTTAAAATTT
390 CATGGAGGTATTTATGGATGATTTCTCGGTATTTGGTAACTCTATCCATCTTTGCCTTAAAATTT
*
85016864 TAAAATGAGTTCTAATAAGATGTGAAGAAATGAACCTTGTACTTAACTGGGAAAAATGTCACTTT
455 TAAAACGAGTTCTAATAAGATGTGAAGAAATGAACCTTGTACTTAACTGGGAAAAATGTCACTTT
85016929 ATGGTTCAAGAAGGTATTGTGCTAGGACATAAAATTTCTAGTAAAGGCATTGAGGTTGATAAATC
520 ATGGTTCAAGAAGGTATTGTGCTAGGACATAAAATTTCTAGTAAAGGCATTGAGGTTGATAAATC
* *
85016994 TAAAGTCGAAATCATTGAAAAATTACTTCCTCCTAGTTCGGT
585 TAAAGTCAAAATCATTGAAAAATTACCTCCTCCTAGTTCGGT
85017036 TAAG
1 TAAG
85017040 GCTATTTGAA
Statistics
Matches: 609, Mismatches: 21, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
626 251 0.41
627 358 0.59
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (626 bp):
TAAGTCCAGTACAGGTTATTCCTAAGAAAGGAGACATGACTGTGGTAGCCAATGAGAAGAATGAA
CTAATTCCAACTAGAACAGTCACAGGTTGGAGAGATTGCATTGAATATAGGAAGCTAAATGATGC
CACAAGGAAAGATCACTTCCCCTTGCCATTCATTGACCAAATGTTGGAAAAACTATCAGCGCACA
TGTACTACTGCTTCTTAGACGGATTATATGGCTATTTTCAAATCCCAATAGCTCCTGAAGATCAG
GAAAAAAATGACATTCACATGTCCATACGGTACATTTGCTTATCGAAGAATGCCCTTTGGATTAT
GTAATGCTCCTGCTACATTCCAGCGCTGTATGATGACCATCTTTGACGAACTTGTAGTAGATATC
ATGGAGGTATTTATGGATGATTTCTCGGTATTTGGTAACTCTATCCATCTTTGCCTTAAAATTTT
AAAACGAGTTCTAATAAGATGTGAAGAAATGAACCTTGTACTTAACTGGGAAAAATGTCACTTTA
TGGTTCAAGAAGGTATTGTGCTAGGACATAAAATTTCTAGTAAAGGCATTGAGGTTGATAAATCT
AAAGTCAAAATCATTGAAAAATTACCTCCTCCTAGTTCGGT
Found at i:85021107 original size:39 final size:40
Alignment explanation
Indices: 85020972--85021195 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
85020962 TTGAATGCTG
* * * * *
85020972 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
85021012 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
85021051 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
85021091 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
85021131 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
85021170 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
85021196 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
39 67 0.43
40 82 0.52
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85021112 original size:79 final size:78
Alignment explanation
Indices: 85020972--85021195 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 78
85020962 TTGAATGCTG
* * * * *
85020972 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
85021036 TGTGCGAGATA-CAAA
63 TGTGCGAGATATCAAA
* * *
85021051 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
* *
85021116 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * * *
85021131 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
85021196 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
78 10 0.08
79 81 0.66
80 24 0.20
81 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATATCAAA
Found at i:85021213 original size:79 final size:79
Alignment explanation
Indices: 85021052--85021228 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 79
85021042 AGATACAAAT
* * * *
85021052 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
85021117 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* * *
85021131 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
85021195 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
*
85021210 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
85021229 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 25 0.30
79 58 0.70
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTGACTAAA
Found at i:85029524 original size:10 final size:10
Alignment explanation
Indices: 85029509--85029537 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
85029499 ACCTATCGAT
85029509 TCAATTCATA
1 TCAATTCATA
85029519 TCAATTCATA
1 TCAATTCATA
85029529 TCAATTCAT
1 TCAATTCAT
85029538 GCATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (10 bp):
TCAATTCATA
Found at i:85029862 original size:27 final size:27
Alignment explanation
Indices: 85029832--85030009 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85029822 ATATTGAGTC
* * * *
85029832 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
85029859 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85029886 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
85029914 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
85029941 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
85029968 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85029995 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85030010 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:85029971 original size:82 final size:81
Alignment explanation
Indices: 85029853--85030008 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85029843 TGCTATATAA
* *
85029853 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
85029918 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
85029935 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
85029999 CACTTAGTGC
65 CACTTAGTGC
85030009 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85032453 original size:80 final size:79
Alignment explanation
Indices: 85032316--85032540 Score: 256
Period size: 80 Copynumber: 2.8 Consensus size: 79
85032306 TTGAATGCTG
* * * * * *
85032316 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
85032380 TGTGCGAGATA-CAAA
64 TGTGCGAGATATCAAA
* *
85032395 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATT
* * *
85032460 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * * * *
85032476 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
85032541 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
79 39 0.32
80 70 0.57
81 14 0.11
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:85032520 original size:39 final size:39
Alignment explanation
Indices: 85032316--85032538 Score: 225
Period size: 40 Copynumber: 5.6 Consensus size: 39
85032306 TTGAATGCTG
* * * * * *
85032316 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** *
85032356 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
* * *
85032395 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
85032436 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
85032476 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
85032515 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
85032539 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 39 0.25
40 105 0.68
41 11 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:85032558 original size:79 final size:80
Alignment explanation
Indices: 85032396--85032573 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
85032386 AGATACAAAT
* * * *
85032396 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
85032461 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
85032476 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
85032540 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
85032555 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
85032574 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:85045355 original size:43 final size:42
Alignment explanation
Indices: 85045242--85045355 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 42
85045232 TGATTATATA
*
85045242 TAAGACCATGTCTGGGACATTGGCATCATTATACAATTACGTG
1 TAAGACCATGTCT-GGACATTGGCATCGTTATACAATTACGTG
* * *
85045285 TAAGACCATGCCTTGAGCATTGGCATCGTTA-ATCAATTTCGTG
1 TAAGACCATGTCTGGA-CATTGGCATCGTTATA-CAATTACGTG
* *
85045328 TAAGACCCTGTCTAGGACAGTGGCATCG
1 TAAGACCATGTCT-GGACATTGGCATCG
85045356 ATATGTGATA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 3 0.05
43 55 0.92
44 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (42 bp):
TAAGACCATGTCTGGACATTGGCATCGTTATACAATTACGTG
Found at i:85046991 original size:53 final size:53
Alignment explanation
Indices: 85046817--85047071 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 53
85046807 GTTAGGGTTT
*
85046817 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * **
85046872 AAGGA-AGTCATGTAAGACCATGTCAAGACATGACATTCATAAGTTACCATAAGGC
1 AAGGATA-CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--CATAAGGC
* * *
85046927 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
85046980 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * * *
85047029 AATGATACCAAGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
85047072 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 8 0.05
53 44 0.26
54 8 0.05
55 65 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:85047279 original size:16 final size:16
Alignment explanation
Indices: 85047258--85047288 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85047248 ATAAATTTGA
85047258 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
85047274 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
85047289 AGAGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:85054725 original size:108 final size:110
Alignment explanation
Indices: 85054526--85054726 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
85054516 TTTAAGGATA
* *
85054526 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAATGCAAGGAAATAATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACAATGTAAGA
*
85054591 CCATGTCAAGACATGGCATTGATAAGTTACCATAAGGAAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGAAAAGGTC
* * * *
85054636 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGAAACAATGTAAG
*
85054698 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
85054727 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACAATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGAAAAGGTC
Found at i:85056168 original size:23 final size:23
Alignment explanation
Indices: 85056138--85056187 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
85056128 AATTTTCAAT
85056138 GTAAATTTTTATGCCCCAAATTA
1 GTAAATTTTTATGCCCCAAATTA
*
85056161 GTAAATTTTTATTCCCCAAATTA
1 GTAAATTTTTATGCCCCAAATTA
85056184 GTAA
1 GTAA
85056188 GCTAGGTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (23 bp):
GTAAATTTTTATGCCCCAAATTA
Found at i:85057889 original size:21 final size:22
Alignment explanation
Indices: 85057856--85057896 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
85057846 TTCATTTATG
*
85057856 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
85057877 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
85057897 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:85058374 original size:28 final size:28
Alignment explanation
Indices: 85058306--85058375 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
85058296 GAATCATTCG
* *
85058306 ATATTTCGCACACTAAGTGTCGTTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
85058334 ATATCTT-GCACACTAAGTGCCATTCTCA
1 ATAT-TTCGCACACTAAGTGCCATTCTCA
*
85058362 ATATTTCGTACACT
1 ATATTTCGCACACT
85058376 GAGTTCAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 2 0.05
28 33 0.89
29 2 0.05
ACGTcount: A:0.27, C:0.26, G:0.11, T:0.36
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:85062963 original size:28 final size:27
Alignment explanation
Indices: 85062919--85062973 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
85062909 ATGCAATTAG
* *
85062919 AATTCTTACTCATCCATCCTCTACACTC
1 AATTCTTACCCACCCATCCT-TACACTC
85062947 AATTCTTACCCACCCATCCTTACACTC
1 AATTCTTACCCACCCATCCTTACACTC
85062974 CAAAATATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.25, C:0.42, G:0.00, T:0.33
Consensus pattern (27 bp):
AATTCTTACCCACCCATCCTTACACTC
Found at i:85070646 original size:24 final size:24
Alignment explanation
Indices: 85070619--85070667 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
85070609 CATTTGAAAT
85070619 TTCCATTGAATATGTGTGTATGCA
1 TTCCATTGAATATGTGTGTATGCA
85070643 TTCCATTGAATATGTGTGTATGCA
1 TTCCATTGAATATGTGTGTATGCA
85070667 T
1 T
85070668 GAGTTGTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.43
Consensus pattern (24 bp):
TTCCATTGAATATGTGTGTATGCA
Found at i:85071690 original size:17 final size:17
Alignment explanation
Indices: 85071668--85071722 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
85071658 TCTTTCATGC
85071668 ATGTTAGTATTCATACT
1 ATGTTAGTATTCATACT
* * * *
85071685 ATGTTA-TGTGCCTA-A
1 ATGTTAGTATTCATACT
85071700 ATGTTAGTATTCATACT
1 ATGTTAGTATTCATACT
85071717 ATGTTA
1 ATGTTA
85071723 CATGCGTAAC
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
15 6 0.21
16 10 0.36
17 12 0.43
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (17 bp):
ATGTTAGTATTCATACT
Found at i:85072078 original size:46 final size:48
Alignment explanation
Indices: 85072011--85072131 Score: 147
Period size: 48 Copynumber: 2.6 Consensus size: 48
85072001 TGTGAGCCAA
* * * **
85072011 TGTAAGACATGTCTATGACATGCATTG-GCT-TTGAGACGAGAGCTAG
1 TGTAAGACATGTCTAGGACATGCATCGACCTCAAGAGACGAGAGCTAG
* * * *
85072057 TGTAAGACATGTCTAGGACATGCATCGACCTCAAGATATGCGTGCTAG
1 TGTAAGACATGTCTAGGACATGCATCGACCTCAAGAGACGAGAGCTAG
85072105 TGTAAGACATGTCTAGGACATGCATCG
1 TGTAAGACATGTCTAGGACATGCATCG
85072132 GCAGCATTGT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 25 0.39
47 2 0.03
48 37 0.58
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (48 bp):
TGTAAGACATGTCTAGGACATGCATCGACCTCAAGAGACGAGAGCTAG
Found at i:85076780 original size:39 final size:39
Alignment explanation
Indices: 85076717--85076798 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
85076707 ATTACCAACA
*
85076717 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTT
* *
85076756 CCAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTT
85076795 CCAG
1 CCAG
85076799 TGTCTTGCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTT
Found at i:85087239 original size:162 final size:162
Alignment explanation
Indices: 85086972--85087296 Score: 596
Period size: 162 Copynumber: 2.0 Consensus size: 162
85086962 AATTAATCAG
*
85086972 CCAAACTAATCTCAAATCATCAATTTATAGACCATTTCAATACCAATCTGATCAAAGCTGATACC
1 CCAAACTAATCTCAAATCATCAATTTATAGACCATTTCAATACCAATCTCATCAAAGCTGATACC
* *
85087037 AGAACCATTTACTTAACTAAATCACATACCAATTAACAAGATTCATAATCCAAGGTTTACATAAA
66 AGAACCATTTACTTAACTAAATCACATACCAATTAACAAGATTCATAAGCCAAGATTTACATAAA
*
85087102 TATCATATACTATTTCAACCTTCTTTATTAAC
131 AATCATATACTATTTCAACCTTCTTTATTAAC
85087134 CCAAACTAATCTCAAATCATCAATTTATAGACCATTTCAATACCAATCTCATCAAAGCTGATACC
1 CCAAACTAATCTCAAATCATCAATTTATAGACCATTTCAATACCAATCTCATCAAAGCTGATACC
*
85087199 AGAACCATTTACTTAACTAAATCACATACCAATTAACAAGATTCCTAAGCCAAGATTTACATAAA
66 AGAACCATTTACTTAACTAAATCACATACCAATTAACAAGATTCATAAGCCAAGATTTACATAAA
*
85087264 AATCATTTACTATTTCAACCTTCTTTATTAAC
131 AATCATATACTATTTCAACCTTCTTTATTAAC
85087296 C
1 C
85087297 AATTTGGCAT
Statistics
Matches: 157, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
162 157 1.00
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.31
Consensus pattern (162 bp):
CCAAACTAATCTCAAATCATCAATTTATAGACCATTTCAATACCAATCTCATCAAAGCTGATACC
AGAACCATTTACTTAACTAAATCACATACCAATTAACAAGATTCATAAGCCAAGATTTACATAAA
AATCATATACTATTTCAACCTTCTTTATTAAC
Found at i:85088244 original size:43 final size:42
Alignment explanation
Indices: 85088178--85088290 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 42
85088168 TACCATACCA
* * * * *
85088178 ATGCCATATCCCAGATATGGTCTTACAGGTAATTTCATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
85088220 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
*
85088263 ATACCCATAGCCCAGCTATGGTCTTACA
1 AT-GCCATAGCCCAGCTATGGTCTTACA
85088291 TGTATTATAA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 5 0.08
43 56 0.89
44 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
Found at i:85097991 original size:39 final size:40
Alignment explanation
Indices: 85097914--85098060 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
85097904 TAGCTCCTCG
* * *
85097914 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
85097954 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
85097993 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
85098033 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
85098061 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:85098071 original size:80 final size:80
Alignment explanation
Indices: 85097960--85098140 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
85097950 CTCATTCAAT
* * *
85097960 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
85098023 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
85098039 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
85098103 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
85098120 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
85098141 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:85098100 original size:40 final size:40
Alignment explanation
Indices: 85097957--85098140 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
85097947 TAACTCATTC
* *
85097957 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
85097997 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
85098037 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
85098077 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
85098118 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
85098141 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:85105893 original size:39 final size:40
Alignment explanation
Indices: 85105816--85105962 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
85105806 TAGCTCCTCG
* * *
85105816 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
85105856 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
85105895 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
85105935 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
85105963 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:85105973 original size:80 final size:80
Alignment explanation
Indices: 85105862--85106042 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
85105852 CTCATTCAAT
* * *
85105862 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
85105925 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
85105941 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
85106005 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
85106022 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
85106043 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:85106002 original size:40 final size:40
Alignment explanation
Indices: 85105859--85106042 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
85105849 TAACTCATTC
* *
85105859 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
85105899 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
85105939 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
85105979 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
85106020 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
85106043 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:85111763 original size:22 final size:22
Alignment explanation
Indices: 85111738--85111788 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
85111728 GAGTTTATCC
*
85111738 ACAAATTAGTGGTGGCATGTCA
1 ACAAATGAGTGGTGGCATGTCA
85111760 ACAAATGAGTGGTGGCATGTCA
1 ACAAATGAGTGGTGGCATGTCA
85111782 ACAAATG
1 ACAAATG
85111789 GTGTTTCGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (22 bp):
ACAAATGAGTGGTGGCATGTCA
Found at i:85116864 original size:40 final size:40
Alignment explanation
Indices: 85116820--85116902 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
85116810 CATAATAAGG
*
85116820 TATGTTACCATCTTTTTAAATCTTATAATATTTTTGCGAC
1 TATGTTACCATCTTTTTAAATCTTATAATATTTTTGCAAC
85116860 TATGTTACCATCTTTTTAAATCTTATAATATTTTTGCAAC
1 TATGTTACCATCTTTTTAAATCTTATAATATTTTTGCAAC
85116900 TAT
1 TAT
85116903 CTTAACTATA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.29, C:0.14, G:0.06, T:0.51
Consensus pattern (40 bp):
TATGTTACCATCTTTTTAAATCTTATAATATTTTTGCAAC
Found at i:85116904 original size:22 final size:22
Alignment explanation
Indices: 85116839--85116906 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 22
85116829 ATCTTTTTAA
*
85116839 ATCTTATAATATTTTTGCGACT
1 ATCTTATAATATTTTTGCAACT
* ** *
85116861 ATGTTACCATCTTTTT--AA--
1 ATCTTATAATATTTTTGCAACT
85116879 ATCTTATAATATTTTTGCAACT
1 ATCTTATAATATTTTTGCAACT
85116901 ATCTTA
1 ATCTTA
85116907 ACTATACTTG
Statistics
Matches: 33, Mismatches: 9, Indels: 8
0.66 0.18 0.16
Matches are distributed among these distances:
18 12 0.36
20 3 0.09
22 18 0.55
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.50
Consensus pattern (22 bp):
ATCTTATAATATTTTTGCAACT
Found at i:85124451 original size:79 final size:79
Alignment explanation
Indices: 85124352--85124531 Score: 240
Period size: 79 Copynumber: 2.3 Consensus size: 79
85124342 GGCTAATTTA
* * *
85124352 GGGCTAAG-CCCGAAGACATTTGTGCGAGCTACTAATTCTGGGCTAAGT-CCGAAGGCATTTGTA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-TAATACCGGGCTAAGTCCCGAAGGCATTTGTA
* *
85124415 CGAGCTACTA-ATTCC
65 CAAGCTACTATA-ACC
* * *
85124430 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATACCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATAATACCGGGCTAAGTCCCGAAGGCATTTGTAC
*
85124495 AAGTTACTATAACC
66 AAGCTACTATAACC
85124509 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
85124532 AGCTAGTGGC
Statistics
Matches: 90, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
78 21 0.23
79 68 0.76
80 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATAATACCGGGCTAAGTCCCGAAGGCATTTGTAC
AAGCTACTATAACC
Found at i:85124521 original size:40 final size:40
Alignment explanation
Indices: 85124309--85124531 Score: 242
Period size: 39 Copynumber: 5.7 Consensus size: 40
85124299 TCGGATGATA
* * *
85124309 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGCT-ACTAAT
*** *
85124349 TTAGGGCTAAG-CCCGAAGACATTTGTGCGAGCTACTAAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
* * *
85124388 TCTGGGCTAAGT-CCGAAGGCATTTGTACGAGCTACTAAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
* * *
85124427 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
* *
85124466 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-AT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
85124505 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
85124532 AGCTAGTGGC
Statistics
Matches: 160, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 102 0.64
40 58 0.36
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
Found at i:85124545 original size:40 final size:40
Alignment explanation
Indices: 85124306--85124554 Score: 186
Period size: 39 Copynumber: 6.3 Consensus size: 40
85124296 TGTTCGGATG
* *
85124306 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTAGCT
* *
85124346 AATTTA--GGGCTAAG-CCCGAAGACATTTGTGC--G-AGCT
1 -A-TAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCT
* *
85124382 ACTAATTCTGGGCTAAGT-CCGAAGGCATTTGTAC--G-AGCT
1 A-TAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCT
* *
85124421 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TT
1 A-TAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAGCT
*
85124464 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAGCT
* *
85124503 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCT
*
85124543 ATATCC-GGCTAA
1 ATAACCGGGCTAA
85124555 ACTCCGAAGG
Statistics
Matches: 177, Mismatches: 17, Indels: 30
0.79 0.08 0.13
Matches are distributed among these distances:
35 3 0.02
36 3 0.02
37 1 0.01
39 99 0.56
40 62 0.35
41 2 0.01
42 4 0.02
43 2 0.01
44 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCT
Found at i:85124553 original size:79 final size:78
Alignment explanation
Indices: 85124352--85124564 Score: 218
Period size: 79 Copynumber: 2.7 Consensus size: 78
85124342 GGCTAATTTA
* * * *
85124352 GGGCTAAG-CCCGAAGACATTTGTGCGAGCT-ACTAATTCTGGGCTAAGTCCGAAGGCATTTGTA
1 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TGACT-ATACCGGGCTAAGTCCGAAGGCATTTGTA
* *
85124415 CGAGCTACTAATTCC
64 CAAGCTACTAATACC
* * * *
85124430 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATACCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTATACCGGGCTAAGT-CCGAAGGCATTTGTAC
*
85124495 AAGTTACT-ATAACC
65 AAGCTACTAAT-ACC
* * *
85124509 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAACTCCGAAGG
1 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTATA-CCGGGCT-AAGTCCGAAGG
85124565 TACTTGGTTT
Statistics
Matches: 115, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 23 0.20
79 87 0.76
80 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
GGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTATACCGGGCTAAGTCCGAAGGCATTTGTACA
AGCTACTAATACC
Found at i:85132511 original size:40 final size:40
Alignment explanation
Indices: 85132417--85132600 Score: 241
Period size: 39 Copynumber: 4.7 Consensus size: 40
85132407 TCGGATGATA
* * **
85132417 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
* *
85132457 -TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
85132496 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
85132535 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-AT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
85132574 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
85132601 AGCTAGTGGC
Statistics
Matches: 129, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 68 0.53
40 61 0.47
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:85132614 original size:40 final size:40
Alignment explanation
Indices: 85132414--85132623 Score: 218
Period size: 40 Copynumber: 5.3 Consensus size: 40
85132404 TGTTCGGATG
*
85132414 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGGCT
** *
85132454 A-ATTCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
* ***
85132490 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 A-TAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
* **
85132533 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
*
85132572 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
*
85132612 ATATCC-GGCTAA
1 ATAACCGGGCTAA
85132624 ACTCCGAAGG
Statistics
Matches: 145, Mismatches: 16, Indels: 19
0.81 0.09 0.11
Matches are distributed among these distances:
36 4 0.03
37 1 0.01
38 1 0.01
39 66 0.46
40 68 0.47
41 1 0.01
42 2 0.01
43 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
Found at i:85132633 original size:79 final size:79
Alignment explanation
Indices: 85132414--85132623 Score: 275
Period size: 79 Copynumber: 2.7 Consensus size: 79
85132404 TGTTCGGATG
*
85132414 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGCTAAGTCCCGAAGGC
*
85132477 ATTTGTGCGAGCTACT
64 ATTTGTGCAAGCTACT
* * * ***
85132493 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAGTCCCGAAGGC
*
85132556 ATTTGTGCAAGTTACT
64 ATTTGTGCAAGCTACT
85132572 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
85132624 ACTCCGAAGG
Statistics
Matches: 110, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
78 2 0.02
79 102 0.93
80 6 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAAGTCCCGAAGGCAT
TTGTGCAAGCTACT
Found at i:85136193 original size:28 final size:28
Alignment explanation
Indices: 85136151--85136208 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
85136141 AGTGAAGAAA
85136151 GGTCCAAACTATCAAACAGAGAAACAGG
1 GGTCCAAACTATCAAACAGAGAAACAGG
* * * *
85136179 GGTCGAAACTGTCAAACAGCGAAATAGG
1 GGTCCAAACTATCAAACAGAGAAACAGG
85136207 GG
1 GG
85136209 AGACTTTGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.41, C:0.19, G:0.28, T:0.12
Consensus pattern (28 bp):
GGTCCAAACTATCAAACAGAGAAACAGG
Found at i:85138774 original size:40 final size:40
Alignment explanation
Indices: 85138598--85138820 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
85138588 TCCTCGTTCA
* * * * *
85138598 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
85138637 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
85138677 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
85138717 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
85138757 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
85138797 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
85138821 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:85141576 original size:4 final size:5
Alignment explanation
Indices: 85141560--85141623 Score: 55
Period size: 5 Copynumber: 13.2 Consensus size: 5
85141550 ACATGGGATT
* *
85141560 TGATA T-ATA TGAT- TGATA TGATA TGCACA TGATA TG-TA TGATA TGCACA
1 TGATA TGATA TGATA TGATA TGATA TG-ATA TGATA TGATA TGATA TG-ATA
*
85141609 TGACA TG-TA TGATA T
1 TGATA TGATA TGATA T
85141624 ACACATAATG
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
4 15 0.31
5 26 0.53
6 8 0.16
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.38
Consensus pattern (5 bp):
TGATA
Found at i:85141599 original size:20 final size:20
Alignment explanation
Indices: 85141576--85141629 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
85141566 ATATGATTGA
*
85141576 TATGATATGCACATGATATG
1 TATGATATGCACATGACATG
85141596 TATGATATGCACATGACATG
1 TATGATATGCACATGACATG
*
85141616 TATGATATACACAT
1 TATGATATGCACAT
85141630 AATGTATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (20 bp):
TATGATATGCACATGACATG
Found at i:85141600 original size:9 final size:10
Alignment explanation
Indices: 85141560--85141623 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 10
85141550 ACATGGGATT
85141560 TGATAT-ATA
1 TGATATGATA
85141569 TGAT-TGATA
1 TGATATGATA
*
85141578 TGATATGCACA
1 TGATATG-ATA
85141589 TGATATG-TA
1 TGATATGATA
*
85141598 TGATATGCACA
1 TGATATG-ATA
*
85141609 TGACATG-TA
1 TGATATGATA
85141618 TGATAT
1 TGATAT
85141624 ACACATAATG
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
8 1 0.02
9 25 0.57
10 2 0.05
11 16 0.36
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.38
Consensus pattern (10 bp):
TGATATGATA
Found at i:85141708 original size:26 final size:26
Alignment explanation
Indices: 85141680--85141775 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
85141670 AGGAAGTGCA
*
85141680 AAAAGGGC-TATGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
85141705 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
* *
85141731 AAAAGGGCTTTTGCCCTAGTTTATC-
1 AAAAGGGCTTTTGCCCCAGTTTACCG
85141756 AAAAGGGC-TTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
85141776 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
24 11 0.17
25 16 0.24
26 39 0.59
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCG
Found at i:85142035 original size:31 final size:31
Alignment explanation
Indices: 85141997--85142060 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
85141987 CGTTTACAAT
85141997 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
85142028 AAAGGCTTCGGCCCAGTGCTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
85142059 AA
1 AA
85142061 CATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:85149396 original size:20 final size:20
Alignment explanation
Indices: 85149371--85149417 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
85149361 GATTTGATTT
85149371 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
85149391 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
85149411 ACATGAT
1 ACATGAT
85149418 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:85149518 original size:25 final size:25
Alignment explanation
Indices: 85149490--85149572 Score: 125
Period size: 25 Copynumber: 3.4 Consensus size: 25
85149480 TAGTTTACCG
*
85149490 AAAAGGGCTTTTGCCCTAGTTTATT
1 AAAAGGGCTTTTGCCCCAGTTTATT
*
85149515 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTATT
85149540 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATT
85149563 AAAAGAGGCT
1 AAAAG-GGCT
85149573 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
23 9 0.17
24 13 0.25
25 31 0.58
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATT
Found at i:85149556 original size:24 final size:24
Alignment explanation
Indices: 85149465--85149572 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 24
85149455 AGGAAGTGTA
* * *
85149465 AAAAGGGCTATGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
* *
85149489 GAAAAGGGCTTTTGCCCTAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
85149515 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
85149540 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
85149563 AAAAGAGGCT
1 AAAAG-GGCT
85149573 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
23 9 0.12
24 14 0.19
25 39 0.52
26 13 0.17
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:85149816 original size:31 final size:31
Alignment explanation
Indices: 85149781--85149844 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
85149771 CATTTATAGT
85149781 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
85149812 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
85149843 AA
1 AA
85149845 CATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:85151980 original size:39 final size:39
Alignment explanation
Indices: 85151937--85152011 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
85151927 AATGCTATGC
*
85151937 TTGAATTGAAAATTCTATATTATTATTGCATGAATGGCT
1 TTGAATTGAAAATTCTATATTATTATTGCACGAATGGCT
*
85151976 TTGAATTGAAAATTCTATATTGTTATTGCACGAATG
1 TTGAATTGAAAATTCTATATTATTATTGCACGAATG
85152012 ACATGATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (39 bp):
TTGAATTGAAAATTCTATATTATTATTGCACGAATGGCT
Found at i:85152504 original size:50 final size:50
Alignment explanation
Indices: 85152450--85152746 Score: 281
Period size: 50 Copynumber: 5.9 Consensus size: 50
85152440 TAAAATGGTT
* *
85152450 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * ** * *** * *
85152500 TTAGGTCGCATGTATAGTACTAAGTGCAACCTATTATGCGTACCTGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * * ** * * *
85152550 CTTCGATCACGTGTACAGTACTAATTGCAAGCTACTACGTGTACCAGATTG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * *
85152601 TTAGATCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTATCC-GATGG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTA-CCAGATTG
** * * *
85152651 AGAGGTTACATGTGTTGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * * *
85152701 TTAGGTCGCATGTGTAGTTCTAAGTGCAGGCTACTATACGTACCAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAG
85152747 TGAGCTTTGG
Statistics
Matches: 194, Mismatches: 50, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
49 2 0.01
50 152 0.78
51 40 0.21
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
Found at i:85152710 original size:100 final size:98
Alignment explanation
Indices: 85152460--85152753 Score: 331
Period size: 100 Copynumber: 2.9 Consensus size: 98
85152450 TTAGGTCACG
* * *
85152460 TGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTATAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGT
** * ** *
85152525 GCAACCTATTATGCGTACCTGATAGCTTCGATCA
66 GCAGGCTACTACACGTACCTGAGAGCTTC-ATCA
* * * *
85152559 CGTGTACAGTACTAATTGCAAGCTACTACGTGTACCAGATTGTTAGATCGCATGTGTAGTACTAA
1 TGTGT--AGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAA
* *
85152624 GTGCAGGCTACTACATGTATCCGATGGAGAGGTT-A-CA
64 GTGCAGGCTACTACACGTA-CC--T-GAGAGCTTCATCA
* *
85152661 TGTGTTGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTTCTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGT
* * *
85152726 GCAGGCTACTATACGTACCAGTGAGCTT
66 GCAGGCTACTACACGTACCTGAGAGCTT
85152754 TGGTTAGAAG
Statistics
Matches: 163, Mismatches: 26, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
96 6 0.04
99 6 0.04
100 70 0.43
101 65 0.40
102 8 0.05
103 1 0.01
104 1 0.01
105 6 0.04
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGT
GCAGGCTACTACACGTACCTGAGAGCTTCATCA
Found at i:85156513 original size:15 final size:15
Alignment explanation
Indices: 85156493--85156552 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
85156483 TATGATATTG
85156493 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
85156508 TATCTTGGATTTCTC
1 TATCTTGGATTTCTT
*
85156523 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
* * *
85156538 AATCCTGGTTTTCTT
1 TATCTTGGATTTCTT
85156553 GTTATTTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.13, C:0.18, G:0.13, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:85159110 original size:39 final size:39
Alignment explanation
Indices: 85159067--85159144 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
85159057 CAATGCTATG
85159067 TTTGAATTGAAAATTCTATATTATTATTGCACGAATGGC
1 TTTGAATTGAAAATTCTATATTATTATTGCACGAATGGC
85159106 TTTGAATTGAAAATTCTATATTATTATTGCACGAATGGC
1 TTTGAATTGAAAATTCTATATTATTATTGCACGAATGGC
85159145 ATGATTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (39 bp):
TTTGAATTGAAAATTCTATATTATTATTGCACGAATGGC
Found at i:85159788 original size:50 final size:50
Alignment explanation
Indices: 85159548--85159942 Score: 301
Period size: 50 Copynumber: 7.8 Consensus size: 50
85159538 GTTGTGAGAA
* * *** * *
85159548 CACATTTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG--TTAGGT
* * * * ** *
85159600 CTCGTGTGTAGTACTAAGTCCAGACTACTACATGTACTAGATTA-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAGTTAGGT
** * *
85159650 CACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCA-ATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATAG-TTAGGT
** * * * * *
85159701 CATGTGTTTAGTACTAAGTGTAGGCTACCACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * * * * * *
85159751 CGCATATGTAGTACTAAGTGCAGGCGACTATGCGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG-TTAGGT
* * * *
85159802 CACGTGTGTAGTGCTAAGTGCAGGCTACTATGTGTATTC-GATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATAGTTAGGT
** * * * *
85159852 CATGTGTGTTGTACTAAGTGTAGGCTACTACGTGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
** *
85159902 CGTATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
85159943 GAGCTTCAGT
Statistics
Matches: 264, Mismatches: 71, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
49 3 0.01
50 155 0.59
51 75 0.28
52 30 0.11
53 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
Found at i:85159837 original size:101 final size:101
Alignment explanation
Indices: 85159602--85159942 Score: 362
Period size: 101 Copynumber: 3.4 Consensus size: 101
85159592 TTTTAGGTCT
* * * * *
85159602 CGTGTGTAGTACTAAGTCCAGACTACTACATGTACTAGATTATTAGGTCACATGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAA
* *
85159667 GTGCAGGCTACTATGCATACCCAATAGCTTCGATCA
66 GTGCAGGCTACTATGCGTACCCGATAGCTTCGATCA
* * * * * *
85159703 TGTGTTTAGTACTAAGTGTAGGCTACCACGTGTACCAGATTGTTAGGTCGCATATGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAA
*
85159768 GTGCAGGCGACTATGCGTACCCGATAGCTTCGATCA
66 GTGCAGGCTACTATGCGTACCCGATAGCTTCGATCA
* * * * ** *
85159804 CGTGTGTAGTGCTAAGTGCAGGCTACTATGTGTATTC-GATGGTTAGGTCATGTGTGTTGTACTA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTGTTAGGTCACATGTGTAGTACTA
* * * * * * * *
85159868 AGTGTAGGCTACTACGTGTACCAGAT-GGTTAGGTCG
65 AGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCA
** * *
85159904 TATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
85159943 GAGCTTCAGT
Statistics
Matches: 197, Mismatches: 41, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
99 1 0.01
100 38 0.19
101 157 0.80
102 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (101 bp):
CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAA
GTGCAGGCTACTATGCGTACCCGATAGCTTCGATCA
Found at i:85159857 original size:151 final size:152
Alignment explanation
Indices: 85159649--85159949 Score: 426
Period size: 151 Copynumber: 2.0 Consensus size: 152
85159639 GATTATTAGG
*
85159649 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCAATAGCTTCGATCATGTGT-TTAGT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCAATAGCTTAGATCATGTGTGTT-GT
*
85159713 ACTAAGTGTAGGCTACCACGTGTACCAGATTGTTAGGTCGCATATGTAGTACTAAGTGCAGGCGA
65 ACTAAGTGTAGGCTACCACGTGTACCAGATGGTTAGGTCGCATATGTAGTACTAAGTGCAGGCGA
* *
85159778 CTATGCGTACCCGATAGCTTCGA
130 CTATGCGTACCAGAGAGCTTCGA
* * ** ** * * *
85159801 TCACGTGTGTAGTGCTAAGTGCAGGCTACTATGTGTATTCGAT-GGTTAGGTCATGTGTGTTGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCAATAGCTTAGATCATGTGTGTTGTA
* * * *
85159865 CTAAGTGTAGGCTACTACGTGTACCAGATGGTTAGGTCGTATGTGTAGTACTAAGTGCAGGCTAC
66 CTAAGTGTAGGCTACCACGTGTACCAGATGGTTAGGTCGCATATGTAGTACTAAGTGCAGGCGAC
85159930 TATGCGTACCAGAGAGCTTC
131 TATGCGTACCAGAGAGCTTC
85159950 AGTTACAAGG
Statistics
Matches: 131, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
151 93 0.71
152 38 0.29
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (152 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCAATAGCTTAGATCATGTGTGTTGTA
CTAAGTGTAGGCTACCACGTGTACCAGATGGTTAGGTCGCATATGTAGTACTAAGTGCAGGCGAC
TATGCGTACCAGAGAGCTTCGA
Found at i:85170900 original size:13 final size:13
Alignment explanation
Indices: 85170882--85170911 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
85170872 GTTTAAAAAC
85170882 TTTTTATTTATTA
1 TTTTTATTTATTA
85170895 TTTTTATTTATTA
1 TTTTTATTTATTA
85170908 TTTT
1 TTTT
85170912 CACTTTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTATTTATTA
Found at i:85179785 original size:15 final size:15
Alignment explanation
Indices: 85179765--85179794 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
85179755 CATATCTTTC
85179765 AATAATATCATCATA
1 AATAATATCATCATA
85179780 AATAATATCATCATA
1 AATAATATCATCATA
85179795 TACTAAGTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAATATCATCATA
Found at i:85184909 original size:21 final size:21
Alignment explanation
Indices: 85184881--85184936 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
85184871 GATCTATACA
*
85184881 AGTA-AATTTAACATCAATTT
1 AGTACAATTTAACATCAATTC
85184901 AGTACAATTTAA-ACTCAATTC
1 AGTACAATTTAACA-TCAATTC
*
85184922 AGTCCAATTT-ACATC
1 AGTACAATTTAACATC
85184937 TTAGGCAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 8 0.26
21 23 0.74
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (21 bp):
AGTACAATTTAACATCAATTC
Found at i:85197736 original size:46 final size:46
Alignment explanation
Indices: 85197686--85197858 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
85197676 TGGTTGAGCA
85197686 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
85197732 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
85197777 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
85197825 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
85197859 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:85197842 original size:93 final size:93
Alignment explanation
Indices: 85197683--85197853 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
85197673 GGATGGTTGA
* *
85197683 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85197748 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
85197776 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85197841 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85197854 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85199672 original size:79 final size:80
Alignment explanation
Indices: 85199534--85199691 Score: 300
Period size: 79 Copynumber: 2.0 Consensus size: 80
85199524 CGATGCCTCA
*
85199534 AGGAGTGGATATGATAAAATTTCACAGAACCCCCGTTGATAGAATTCGTAAACAAGGGGCTGAAG
1 AGGAGTGGATATGATAAAATTTCACAGAACCCCCGTTGACAGAATTCGTAAACAAGGGGCTGAAG
85199599 AATTTAGAGCAAATC
66 AATTTAGAGCAAATC
85199614 AGGAGT-GATATGATAAAATTTCACAGAACCCCCGTTGACAGAATTCGTAAACAAGGGGCTGAAG
1 AGGAGTGGATATGATAAAATTTCACAGAACCCCCGTTGACAGAATTCGTAAACAAGGGGCTGAAG
85199678 AATTTAGAGCAAAT
66 AATTTAGAGCAAAT
85199692 ATTGATGATG
Statistics
Matches: 77, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
79 71 0.92
80 6 0.08
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (80 bp):
AGGAGTGGATATGATAAAATTTCACAGAACCCCCGTTGACAGAATTCGTAAACAAGGGGCTGAAG
AATTTAGAGCAAATC
Found at i:85205384 original size:46 final size:46
Alignment explanation
Indices: 85205334--85205506 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
85205324 TGGTTGAGCA
85205334 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
85205380 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
85205425 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
85205473 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
85205507 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:85205490 original size:93 final size:93
Alignment explanation
Indices: 85205331--85205501 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
85205321 GGATGGTTGA
* *
85205331 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85205396 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
85205424 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85205489 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85205502 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85210193 original size:40 final size:40
Alignment explanation
Indices: 85210088--85210294 Score: 287
Period size: 40 Copynumber: 5.2 Consensus size: 40
85210078 CGGATGATAA
* *
85210088 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
85210128 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
85210167 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
85210207 CCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACAATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
85210247 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
85210287 CC-GGCTAA
1 CCGGGCTAA
85210295 ATTTCGAAGG
Statistics
Matches: 152, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 43 0.28
40 109 0.72
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:85210302 original size:119 final size:119
Alignment explanation
Indices: 85210084--85210304 Score: 322
Period size: 119 Copynumber: 1.9 Consensus size: 119
85210074 TATTCGGATG
* * *
85210084 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
85210149 TTGTGCGAGTTACTATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACT
66 TTGAGCAAGTTACTATATCCGGGCTAAATCTCGAAGGCATTTGTGCGAGTTACT
*
85210203 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTAC-AATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
85210267 ATTTGAGCAAG-TAGCTATATCC-GGCTAAATTTCGAAGG
64 ATTTGAGCAAGTTA-CTATATCCGGGCTAAATCTCGAAGG
85210305 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
118 3 0.03
119 62 0.68
120 26 0.29
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACTATATCCGGGCTAAATCTCGAAGGCATTTGTGCGAGTTACT
Found at i:85214957 original size:31 final size:31
Alignment explanation
Indices: 85214939--85215000 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
85214929 AAGGCCTAAT
85214939 GGCCGATGTGATGAATGTGAAAGTGTATATA
1 GGCCGATGTGATGAATGTGAAAGTGTATATA
85214970 GGCCGATGTGATGAATGTGAAAGTGTATATA
1 GGCCGATGTGATGAATGTGAAAGTGTATATA
85215001 TGTGACAGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.06, G:0.32, T:0.29
Consensus pattern (31 bp):
GGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:85216955 original size:26 final size:26
Alignment explanation
Indices: 85216926--85217102 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 26
85216916 ATATTGAGCC
* *
85216926 CGCACACTCAGTGCTA-TACATCAACT
1 CGCACACTTAGTGCTACTA-ATCAAAT
*
85216952 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* * *
85216979 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTAC-TAATCA-AAT
** ** *
85217007 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* **
85217034 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-C-TAATCAAAT
* * *
85217061 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
85217088 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85217103 GTACAATTTA
Statistics
Matches: 124, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 14 0.11
27 85 0.69
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTACTAATCAAAT
Found at i:85216983 original size:27 final size:27
Alignment explanation
Indices: 85216946--85217101 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
85216936 GTGCTATACA
* * *
85216946 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
85216973 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* * * *
85217000 TTAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAG
* *
85217028 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
85217055 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
*
85217082 TCGAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
85217102 TGTACAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 82 0.77
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:85217018 original size:55 final size:55
Alignment explanation
Indices: 85216926--85217102 Score: 202
Period size: 55 Copynumber: 3.3 Consensus size: 55
85216916 ATATTGAGCC
* * * *
85216926 CGCACACTCAGTGCTAT-ACA-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
85216979 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
85217034 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
85217088 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85217103 GTACAATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
53 17 0.17
54 41 0.40
55 45 0.44
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:85217045 original size:82 final size:81
Alignment explanation
Indices: 85216946--85217101 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
85216936 GTGCTATACA
* * *
85216946 TCAACTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGC
85217010 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * ** *
85217028 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
85217093 ACTTAGTGC
66 ACTTAGTGC
85217102 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85223336 original size:45 final size:45
Alignment explanation
Indices: 85223269--85223376 Score: 132
Period size: 45 Copynumber: 2.4 Consensus size: 45
85223259 TTGACTTGAT
* * *
85223269 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGA-TAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGA-ACTAA
** *
85223314 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATTCCGGTGAACTAA
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAACTAA
85223359 TA-TCGGGCC-TCGAGCCTA
1 TATTCGGGCCTTCGAGCCTA
85223377 ACAGGCGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
43 9 0.16
44 8 0.14
45 39 0.70
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAACTAA
Found at i:85225573 original size:21 final size:20
Alignment explanation
Indices: 85225549--85225604 Score: 50
Period size: 21 Copynumber: 2.9 Consensus size: 20
85225539 TTCTCCTCTC
85225549 TTCTTCCATTCTCTTTCTTT
1 TTCTTCCATTCTCTTTCTTT
85225569 GTTCTT---TTCT-TTTCTTT
1 -TTCTTCCATTCTCTTTCTTT
85225586 TTCTCTCCA-TCTACTTTCT
1 TTCT-TCCATTCT-CTTTCT
85225605 CCTCTTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
16 4 0.14
17 8 0.28
18 4 0.14
19 3 0.10
21 10 0.34
ACGTcount: A:0.05, C:0.29, G:0.02, T:0.64
Consensus pattern (20 bp):
TTCTTCCATTCTCTTTCTTT
Found at i:85225589 original size:16 final size:18
Alignment explanation
Indices: 85225557--85225589 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
85225547 TCTTCTTCCA
85225557 TTCTCTTTCTTTGTTCTT
1 TTCTCTTTCTTTGTTCTT
85225575 TTCT-TTTCTTT-TTCT
1 TTCTCTTTCTTTGTTCT
85225590 CTCCATCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (18 bp):
TTCTCTTTCTTTGTTCTT
Found at i:85226814 original size:20 final size:20
Alignment explanation
Indices: 85226789--85226828 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
85226779 TTGTTATCGG
*
85226789 CCAACTGTATTGAAATGGGC
1 CCAACTATATTGAAATGGGC
* *
85226809 CCAACTATGTTGATATGGGC
1 CCAACTATATTGAAATGGGC
85226829 AAGGCCCAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (20 bp):
CCAACTATATTGAAATGGGC
Found at i:85226921 original size:60 final size:60
Alignment explanation
Indices: 85226819--85226957 Score: 167
Period size: 60 Copynumber: 2.3 Consensus size: 60
85226809 CCAACTATGT
*
85226819 TGATATGGGCAAGGCCCAATATATCTTGACTCGTAATAGGGCTACAACCCAGATTAATAC
1 TGATATGGGCTAGGCCCAATATATCTTGACTCGTAATAGGGCTACAACCCAGATTAATAC
* *** *
85226879 TGATATGGGCTAGGCCCAATATA-CTCTGA-TACTGTAA-GGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCTAGGCCCAATATATCT-TGACT-C-GTAATAGGGCTACAACCCAGATTAATAC
85226939 TGATATGGGCTAAGGCCCA
1 TGATATGGGCT-AGGCCCA
85226958 GTTAACACTG
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
59 3 0.04
60 55 0.80
61 11 0.16
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (60 bp):
TGATATGGGCTAGGCCCAATATATCTTGACTCGTAATAGGGCTACAACCCAGATTAATAC
Found at i:85252412 original size:42 final size:43
Alignment explanation
Indices: 85252324--85252429 Score: 162
Period size: 42 Copynumber: 2.5 Consensus size: 43
85252314 TAATGTTGAC
**
85252324 GTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCGAT
*
85252367 GTCCCAGACAGGGTCTTACACG-AATTCAG-ATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAATTCAGTAT-CGATGCCGAT
85252409 GTCCCAGACATGGTCTTACAC
1 GTCCCAGACATGGTCTTACAC
85252430 ATAAATCTCA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
41 2 0.03
42 35 0.60
43 21 0.36
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCGAT
Found at i:85256462 original size:44 final size:43
Alignment explanation
Indices: 85256395--85256482 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 43
85256385 TTGTTCTGAC
**
85256395 TAGGCCCAAAATCGGGCTATTACAATGAATGTTTTTTAAATGGT
1 TAGGCCCAAAATCCAGCTATTACAATGAAT-TTTTTTAAATGGT
* * *
85256439 TAGGCCCGAAATCCAGCTGTTACAATGAATTTTTTTGAATGGT
1 TAGGCCCAAAATCCAGCTATTACAATGAATTTTTTTAAATGGT
85256482 T
1 T
85256483 TAAATTAAGT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 13 0.33
44 26 0.67
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (43 bp):
TAGGCCCAAAATCCAGCTATTACAATGAATTTTTTTAAATGGT
Found at i:85260125 original size:43 final size:42
Alignment explanation
Indices: 85260001--85260157 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
85259991 TGTGTTATCG
* * * * *
85260001 TGTAAGACCACATCTGGGACGTTGGCATCG-ACTTATAATTTACG
1 TGTAAGACCACGTCTAGGATGTTGGCATCGTA-TT-TGA-TTACA
* * * *
85260045 CGTAAGACCACGTCTAGGATGTTGGTATCGTATTTGATTTCG
1 TGTAAGACCACGTCTAGGATGTTGGCATCGTATTTGATTACA
*
85260087 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTAGGAT-GTTGGCATCG-TATTTGATTACA
*
85260130 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTAGGATGTTGGCAT
85260158 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.30
43 35 0.38
44 28 0.30
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTAGGATGTTGGCATCGTATTTGATTACA
Found at i:85262522 original size:24 final size:24
Alignment explanation
Indices: 85262495--85262540 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
85262485 TCAAGGAATG
*
85262495 GATTATGGAGAAAATCAAGGAGAA
1 GATTAGGGAGAAAATCAAGGAGAA
* *
85262519 GATTAGGGAGGAAATCATGGAG
1 GATTAGGGAGAAAATCAAGGAG
85262541 GGATTTTAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.04, G:0.35, T:0.17
Consensus pattern (24 bp):
GATTAGGGAGAAAATCAAGGAGAA
Found at i:85264153 original size:26 final size:26
Alignment explanation
Indices: 85264019--85264493 Score: 358
Period size: 27 Copynumber: 17.9 Consensus size: 26
85264009 AAGGCCCCGG
* * *
85264019 TTTGTAAAATTACCGAAATACCCTAGG
1 TTTGTAAAATTACTGAAATACCCCA-A
*
85264046 TTTGTAAAATTA-TCGAAATACTCCCGA
1 TTTGTAAAATTACT-GAAATAC-CCCAA
* * *
85264073 TTTGCAAAATTACCGAAATACCTTCAA
1 TTTGTAAAATTACTGAAATACC-CCAA
* * *
85264100 ATTATAAAATTATTGAAATACCCCCAA
1 TTTGTAAAATTACTGAAATA-CCCCAA
* *
85264127 TTTGTAAAATTACTAAAATACCTCAA
1 TTTGTAAAATTACTGAAATACCCCAA
* ** *
85264153 TTTTTAAAATTACCAAAATACCCCCGA
1 TTTGTAAAATTACTGAAATA-CCCCAA
*
85264180 -TTGTAAAATTACTGAAATACCCCTGA
1 TTTGTAAAATTACTGAAATACCCC-AA
*
85264206 TTTGTAAAATTATTGAAATACCCTCAA
1 TTTGTAAAATTACTGAAATACCC-CAA
*
85264233 TTTGTAAAATTACTGAAATACCCCTA
1 TTTGTAAAATTACTGAAATACCCCAA
* ***
85264259 TTTGTAAAATTACTGAAATACGCTTG
1 TTTGTAAAATTACTGAAATACCCCAA
* *
85264285 TAATGTAAAATTA-TCAAAATACCCCCTAA
1 T-TTGTAAAATTACT-GAAATA-CCCC-AA
* *
85264314 -TTGTAAAATTATTGAAATACCCCTA
1 TTTGTAAAATTACTGAAATACCCCAA
**
85264339 TTTGTAAAATTACCAAAATACCCTCAAA
1 TTTGTAAAATTACTGAAATACCC-C-AA
* * *
85264367 TTT-AAAAATTA-TCAAAATAGCCCCGGA
1 TTTGTAAAATTACT-GAAATA-CCCC-AA
* **
85264394 -CTGTAAAATTACT-AAATACCCCTGG
1 TTTGTAAAATTACTGAAATACCCC-AA
*
85264419 TTTGTAAAATTAC-AAAATACCCCAA
1 TTTGTAAAATTACTGAAATACCCCAA
**
85264444 TTTGTAAAATTACCAAAATACCCCTAA
1 TTTGTAAAATTACTGAAATACCCC-AA
85264471 TTTGTAAAATTA-TCGAAATACCC
1 TTTGTAAAATTACT-GAAATACCC
85264494 TTCTGGTGTA
Statistics
Matches: 363, Mismatches: 59, Indels: 52
0.77 0.12 0.11
Matches are distributed among these distances:
25 23 0.06
26 128 0.35
27 196 0.54
28 16 0.04
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (26 bp):
TTTGTAAAATTACTGAAATACCCCAA
Found at i:85264214 original size:53 final size:54
Alignment explanation
Indices: 85264013--85264493 Score: 425
Period size: 53 Copynumber: 9.0 Consensus size: 54
85264003 GTCGTTAAGG
* * *
85264013 CCCCGGTTTGTAAAATTACCGAAATA-CCCTAGGTTTGTAAAATTATCGAAATAC
1 CCCCGATTTGTAAAATTACTGAAATACCCCTA-ATTTGTAAAATTATCGAAATAC
* * * * * * *
85264067 TCCCGATTTGCAAAATTACCGAAATA-CCTTCAAATTATAAAATTATTGAAATAC
1 CCCCGATTTGTAAAATTACTGAAATACCCCT-AATTTGTAAAATTATCGAAATAC
* * * * * *
85264121 CCCCAATTTGTAAAATTACTAAAATACCTC-AATTTTTAAAATTACCAAAATAC
1 CCCCGATTTGTAAAATTACTGAAATACCCCTAATTTGTAAAATTATCGAAATAC
* *
85264174 CCCCGA-TTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTATTGAAATAC
1 CCCCGATTTGTAAAATTACTGAAATACCCCTAATTTGTAAAATTATCGAAATAC
* *
85264227 CCTCAATTTGTAAAATTACTGAAATACCCCT-ATTTGTAAAATTA-CTGAAATAC
1 CCCCGATTTGTAAAATTACTGAAATACCCCTAATTTGTAAAATTATC-GAAATAC
* ** * * *
85264280 GCTTG-TAATGTAAAATTA-TCAAAATACCCCCTAA-TTGTAAAATTATTGAAATA-
1 CCCCGAT-TTGTAAAATTACT-GAAATA-CCCCTAATTTGTAAAATTATCGAAATAC
* ** * * *
85264333 CCCCTATTTGTAAAATTACCAAAATACCCTCAAATTT-AAAAATTATCAAAATAGC
1 CCCCGATTTGTAAAATTACTGAAATACCC-CTAATTTGTAAAATTATCGAAATA-C
* * ** *
85264388 CCCGGA-CTGTAAAATTACT-AAATACCCCTGGTTTGTAAAATTA-CAAAATA-
1 CCCCGATTTGTAAAATTACTGAAATACCCCTAATTTGTAAAATTATCGAAATAC
* **
85264438 CCCCAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCGAAATAC
1 CCCCGATTTGTAAAATTACTGAAATACCCCTAATTTGTAAAATTATCGAAATAC
85264492 CC
1 CC
85264494 TTCTGGTGTA
Statistics
Matches: 344, Mismatches: 62, Indels: 42
0.77 0.14 0.09
Matches are distributed among these distances:
50 4 0.01
51 11 0.03
52 59 0.17
53 136 0.40
54 127 0.37
55 7 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
CCCCGATTTGTAAAATTACTGAAATACCCCTAATTTGTAAAATTATCGAAATAC
Found at i:85264241 original size:80 final size:80
Alignment explanation
Indices: 85264020--85264523 Score: 383
Period size: 80 Copynumber: 6.3 Consensus size: 80
85264010 AGGCCCCGGT
* * * * *
85264020 TTGTAAAATTACCGAAATA-CCCTAGGTTTGTAAAATTATCGAAATACTCCC-GATTTGCAAAAT
1 TTGTAAAATTACTGAAATACCCCT-GATTTGTAAAATTATCAAAATAC-CCCTAATTTGTAAAAT
* **
85264083 TACCGAAATACCTTCAAA
64 TACCGAAATACC-CCCGA
* * ** * *
85264101 TTATAAAATTATTGAAATACCCCCAATTTGTAAAATTA-CTAAAATACCTC-AATTTTTAAAATT
1 TTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTATC-AAAATACCCCTAATTTGTAAAATT
*
85264164 ACCAAAATACCCCCGA
65 ACCGAAATACCCCCGA
**
85264180 TTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTATTGAAATA-CCCTCAATTTGTAAAATT
1 TTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTATCAAAATACCCCT-AATTTGTAAAATT
* *
85264244 ACTGAAATA-CCCCTA
65 ACCGAAATACCCCCGA
* * *
85264259 TTTGTAAAATTACTGAAATACGCTTG-TAATGTAAAATTATCAAAATACCCCCTAA-TTGTAAAA
1 -TTGTAAAATTACTGAAATACCCCTGAT-TTGTAAAATTATCAAAATA-CCCCTAATTTGTAAAA
** *
85264322 TTATTGAAATA-CCCCTA
63 TTACCGAAATACCCCCGA
** ** * ** *
85264339 TTTGTAAAATTACCAAAATACCCTCAAATTT-AAAAATTATCAAAATAGCCCCGGA-CTGTAAAA
1 -TTGTAAAATTACTGAAATACCC-CTGATTTGTAAAATTATCAAAATA-CCCCTAATTTGTAAAA
* * *
85264402 TTA-CTAAATACCCCTGGT
63 TTACCGAAATACCCC-CGA
* * *
85264420 TTGTAAAATTAC-AAAATACCCC-AATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTA
1 TTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTAATTTGTAAAATTA
* *
85264483 TCGAAATACCCTTCTG-
66 CCGAAATACCC--CCGA
*
85264499 GTGTAAAATTAC-GAAAATACCCCTG
1 TTGTAAAATTACTG-AAATACCCCTG
85264524 TAGGGTAAAA
Statistics
Matches: 344, Mismatches: 59, Indels: 40
0.78 0.13 0.09
Matches are distributed among these distances:
77 10 0.03
78 27 0.08
79 81 0.24
80 180 0.52
81 38 0.11
82 8 0.02
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (80 bp):
TTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTAATTTGTAAAATTA
CCGAAATACCCCCGA
Found at i:85274211 original size:26 final size:26
Alignment explanation
Indices: 85274181--85274231 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
85274171 ACCAATGAAC
*
85274181 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
85274207 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
85274232 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:85274271 original size:103 final size:104
Alignment explanation
Indices: 85274087--85274308 Score: 362
Period size: 103 Copynumber: 2.2 Consensus size: 104
85274077 AATGGATATC
85274087 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
85274152 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
85274191 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
85274255 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
85274294 GCCAC--AGCAACCCCT
1 G-CACTTAGCAACCCCT
85274309 TTTATATACA
Statistics
Matches: 112, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
102 10 0.09
103 81 0.72
104 21 0.19
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:85274669 original size:28 final size:29
Alignment explanation
Indices: 85274637--85274699 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
85274627 TAATCCACCA
85274637 CCCAACTTTTTG-AAAATTACAATTTTG-C
1 CCCAAC-TTTTGCAAAATTACAATTTTGTC
* *
85274665 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGTC
85274695 CCCAA
1 CCCAA
85274700 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 8 0.27
29 18 0.60
30 4 0.13
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGTC
Found at i:85274673 original size:29 final size:30
Alignment explanation
Indices: 85274644--85274699 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
85274634 CCACCCAACT
85274644 TTTTG-AAAATTACAATTTTG-CCCCAAAC
1 TTTTGCAAAATTACAATTTTGTCCCCAAAC
* *
85274672 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGTCCCCAA
85274700 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.21
29 13 0.54
30 6 0.25
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGTCCCCAAAC
Found at i:85281591 original size:26 final size:26
Alignment explanation
Indices: 85281555--85281606 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
85281545 CACCACTGAA
* *
85281555 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
85281581 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
85281607 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:85281682 original size:69 final size:71
Alignment explanation
Indices: 85281567--85281716 Score: 241
Period size: 70 Copynumber: 2.1 Consensus size: 71
85281557 GGGGAATCAT
*
85281567 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTT-CATTTCAAATATA-AATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATATAATGG
85281630 ATATCG
66 ATATCG
* **
85281636 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATATAATG
85281701 GATATCG
65 GATATCG
85281708 CACTTAGCA
1 CACTTAGCA
85281717 CCACCAATGA
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
69 16 0.22
70 28 0.38
71 12 0.16
72 18 0.24
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATATAATGG
ATATCG
Found at i:85281748 original size:77 final size:70
Alignment explanation
Indices: 85281567--85281753 Score: 234
Period size: 70 Copynumber: 2.6 Consensus size: 70
85281557 GGGGAATCAT
* *
85281567 CACTTAGCAACCCCT-CGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATAAATGGA
1 CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATAAATGGA
85281631 TATCG
66 TATCG
* **
85281636 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATA-AATG
85281701 GATATCG
64 GATATCG
*
85281708 CACTTAGC-ACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCC
1 CACTTAGCAACC-CC--T---CCGGGGAATCAGCACATAGCAACCCC
85281754 TCGGGGGAAT
Statistics
Matches: 102, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
69 15 0.15
70 28 0.27
71 15 0.15
72 19 0.19
74 1 0.01
77 24 0.24
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (70 bp):
CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATAAATGGA
TATCG
Found at i:85281820 original size:104 final size:104
Alignment explanation
Indices: 85281635--85281856 Score: 374
Period size: 104 Copynumber: 2.1 Consensus size: 104
85281625 AATGGATATC
85281635 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
85281700 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
85281739 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
85281804 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
85281843 GCACACAGCAACCC
1 GCACTTAGCAACCC
85281857 TTTTATATAC
Statistics
Matches: 111, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 110 0.99
105 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:85282218 original size:29 final size:29
Alignment explanation
Indices: 85282185--85282248 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
85282175 TAATCCACCA
85282185 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
85282214 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
85282244 CCCAA
1 CCCAA
85282249 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:85282222 original size:30 final size:30
Alignment explanation
Indices: 85282192--85282248 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
85282182 CCACCCAACT
85282192 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
85282221 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
85282249 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:85286229 original size:32 final size:31
Alignment explanation
Indices: 85286147--85286225 Score: 117
Period size: 32 Copynumber: 2.6 Consensus size: 31
85286137 ATATTATATA
*
85286147 TAATACTTATATAATTATT-AATATTTTTAC
1 TAATAGTTATATAATTATTAAATATTTTTAC
*
85286177 TAATAGTTATATAGTGTATTAAATATTTTTAC
1 TAATAGTTATATAAT-TATTAAATATTTTTAC
85286209 TAATAGTTATAT-ATTAT
1 TAATAGTTATATAATTAT
85286226 ATTATTAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
30 16 0.36
31 5 0.11
32 23 0.52
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.52
Consensus pattern (31 bp):
TAATAGTTATATAATTATTAAATATTTTTAC
Found at i:85286235 original size:22 final size:22
Alignment explanation
Indices: 85286199--85286254 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
85286189 AGTGTATTAA
*
85286199 ATATTT-TTACTAATAGT-TAT
1 ATATTTATTATTAATAGTATAT
85286219 ATATTATATTATTAATAGTATAT
1 ATATT-TATTATTAATAGTATAT
*
85286242 ATATTTGTTATTA
1 ATATTTATTATTA
85286255 GTTTATGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 5 0.16
21 1 0.03
22 17 0.55
23 8 0.26
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (22 bp):
ATATTTATTATTAATAGTATAT
Found at i:85286986 original size:21 final size:21
Alignment explanation
Indices: 85286947--85286986 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
85286937 TAACTTGAAT
* *
85286947 TTTTTATTTTTTTAAAATTAA
1 TTTTGATTTTTATAAAATTAA
*
85286968 TTTTGATTTTTATATAATT
1 TTTTGATTTTTATAAAATT
85286987 TTTTAGAACT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (21 bp):
TTTTGATTTTTATAAAATTAA
Found at i:85290204 original size:146 final size:145
Alignment explanation
Indices: 85289941--85290232 Score: 557
Period size: 146 Copynumber: 2.0 Consensus size: 145
85289931 TGTGCATGTC
85289941 TACGACTATTTGCAGTAAAATAGAGCACTCAAATGTATTAGGTAAAAAATATGCTTGTTCACTTG
1 TACGACTATTTGCAGTAAAATAGAGCACTCAAATGTATTAGGTAAAAAATATGCTTGTTCACTTG
* *
85290006 AATGCAAGGGTTGTACTAAACTGTTGTTCTAAATGTACATGGCTTATATTGAGTTGGTACCTATT
66 AATGCAAGGGCTGTACTAAACTGTTGTTCTAAATGTACATGGCTTATATTGAGTTGATACCTATT
85290071 GTCTTTAGTGCTTTG
131 GTCTTTAGTGCTTTG
85290086 TACGACTATTTGCAGTAAAAATAGAGCACTCAAATGTATTAGGTAAAAAATATGCTTGTTCACTT
1 TACGACTATTTGCAGT-AAAATAGAGCACTCAAATGTATTAGGTAAAAAATATGCTTGTTCACTT
85290151 GAATGCAAGGGCTGTACTAAACTGTTGTTCTAAATGTACATGGCTTATATTGAGTTGATACCTAT
65 GAATGCAAGGGCTGTACTAAACTGTTGTTCTAAATGTACATGGCTTATATTGAGTTGATACCTAT
85290216 TGTCTTTAGTGCTTTG
130 TGTCTTTAGTGCTTTG
85290232 T
1 T
85290233 GGCTTGTGTT
Statistics
Matches: 144, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
145 16 0.11
146 128 0.89
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (145 bp):
TACGACTATTTGCAGTAAAATAGAGCACTCAAATGTATTAGGTAAAAAATATGCTTGTTCACTTG
AATGCAAGGGCTGTACTAAACTGTTGTTCTAAATGTACATGGCTTATATTGAGTTGATACCTATT
GTCTTTAGTGCTTTG
Found at i:85296992 original size:46 final size:46
Alignment explanation
Indices: 85296775--85296990 Score: 267
Period size: 46 Copynumber: 4.7 Consensus size: 46
85296765 TGTAACCCGC
* *
85296775 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
*
85296821 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
* *
85296867 CCATAAGTGAACTCGGACTCAACTCAATGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGC-A--T
* *** * * *
85296913 ACATCTCTCGAACTCGGACTCAACTTAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
85296960 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
85296991 TTTGGATGCT
Statistics
Matches: 145, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 2 0.01
46 105 0.72
47 28 0.19
48 1 0.01
49 4 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
Found at i:85296998 original size:93 final size:93
Alignment explanation
Indices: 85296775--85296999 Score: 285
Period size: 93 Copynumber: 2.4 Consensus size: 93
85296765 TGTAACCCGC
* * * * ***
85296775 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCATCCATAAGT-GAACTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAG-TTACATCTCTCGAACTCGG
* *
85296837 ACTCAACTCAACGAGCTCAGGCGTTCGCAT
64 ACTCAACTCAACGAGCTCAGACATTCGCAT
*
85296867 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
* *
85296932 TCAACTTAACGAGTTCAGACATTCGCAT
66 TCAACTCAACGAGCTCAGACATTCGCAT
* *
85296960 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC
85297000 TCAACCATCC
Statistics
Matches: 115, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
92 40 0.35
93 73 0.63
94 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
TCAACTCAACGAGCTCAGACATTCGCAT
Found at i:85301803 original size:39 final size:40
Alignment explanation
Indices: 85301698--85301905 Score: 246
Period size: 40 Copynumber: 5.2 Consensus size: 40
85301688 TATTCGAATG
* *
85301698 ATATCCGGGCTAAGTCCCGAAGG-ATTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGC-GAGTTACT
*
85301739 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
85301779 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
85301818 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
85301858 ATAACCGGGCTATGTCCTGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
85301898 ATATCCGG
1 ATATCCGG
85301906 TTAAATTCTG
Statistics
Matches: 146, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
39 37 0.25
40 80 0.55
41 27 0.18
42 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Done.