Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 267 of 325
Found at i:85301838 original size:79 final size:80
Alignment explanation
Indices: 85301698--85301909 Score: 247
Period size: 79 Copynumber: 2.7 Consensus size: 80
85301688 TATTCGAATG
* * **
85301698 ATATCCGGGCTAAGTCCCGAAGG-ATTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGG
85301762 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* *
85301779 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGG
85301841 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* * * *
85301858 ATAACCGGGCTATGTCCTGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAA
85301910 ATTCTGAAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
78 1 0.01
79 59 0.52
80 40 0.35
81 13 0.12
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:85305802 original size:44 final size:44
Alignment explanation
Indices: 85305739--85305913 Score: 217
Period size: 44 Copynumber: 3.9 Consensus size: 44
85305729 TGTAACCCGC
*
85305739 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
*
85305783 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGC-A--T
* *** *
85305829 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCAT
*
85305876 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
85305914 GCTCAACCAT
Statistics
Matches: 112, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 41 0.37
46 33 0.29
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
Found at i:85305904 original size:93 final size:91
Alignment explanation
Indices: 85305747--85305915 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 91
85305737 GCCCATAAGT
*
85305747 GAACTCGGACTCAACTCAACGAGCTCGGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
85305812 AGCTCGGATGCCTAGTTACATCTCTC
66 AGCTCGGATGCCTAGTTACATCTCTC
*
85305838 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
85305903 CGAGTTCGGATGC
64 CGAGCTCGGATGC
85305916 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 27 0.37
93 46 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTC
Found at i:85313421 original size:30 final size:30
Alignment explanation
Indices: 85313336--85313432 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
85313326 TAAACTAAAA
* *
85313336 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * * * *
85313366 TGAGTTGACATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
*
85313396 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
85313425 ATGAGCTA
1 -TGAGCTA
85313433 GGAGGGAGCT
Statistics
Matches: 49, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
29 1 0.02
30 48 0.98
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:85315587 original size:30 final size:29
Alignment explanation
Indices: 85315542--85315625 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 29
85315532 TTCTTTTGTT
*
85315542 TCAATTTCTTTTTCATCTTCTTTTTCACTC
1 TCAATTTCTTTTTCAT-TTCTTTTTCAATC
85315572 TCAAATTTC-TTTTCATTCTCTTTTTCAATC
1 TC-AATTTCTTTTTCATT-TCTTTTTCAATC
*
85315602 TCATTTTCTTTTTCATTTTCTTTT
1 TCAATTTCTTTTTCA-TTTCTTTT
85315626 GCTTTTCAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
29 6 0.12
30 34 0.71
31 8 0.17
ACGTcount: A:0.14, C:0.23, G:0.00, T:0.63
Consensus pattern (29 bp):
TCAATTTCTTTTTCATTTCTTTTTCAATC
Found at i:85315643 original size:12 final size:12
Alignment explanation
Indices: 85315628--85315658 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
85315618 TTTCTTTTGC
85315628 TTTTCAAAGGCT
1 TTTTCAAAGGCT
85315640 TTTTCAAAGGCT
1 TTTTCAAAGGCT
85315652 TTTTCAA
1 TTTTCAA
85315659 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:85315716 original size:5 final size:5
Alignment explanation
Indices: 85315706--85315762 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
85315696 CTCTTGTCCC
*
85315706 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
85315753 TCTTT TCTTT
1 TCTTT TCTTT
85315763 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:85315746 original size:15 final size:14
Alignment explanation
Indices: 85315706--85315762 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
85315696 CTCTTGTCCC
*
85315706 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
85315721 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
85315736 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
85315753 TCTTTTCTTT
1 TCTTTTCTTT
85315763 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:85315763 original size:21 final size:21
Alignment explanation
Indices: 85315706--85315773 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
85315696 CTCTTGTCCC
* *
85315706 TCTTTTCTTTT-TATTTCATTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
85315727 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
85315748 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
85315768 CTCTTT
1 -TCTTT
85315774 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:85316695 original size:11 final size:12
Alignment explanation
Indices: 85316679--85316721 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
85316669 TAAAACACTT
85316679 TTTTTTTTAG-A
1 TTTTTTTTAGAA
*
85316690 -TTTTTTTCGAA
1 TTTTTTTTAGAA
*
85316701 TTTTTTTTCGAA
1 TTTTTTTTAGAA
85316713 TTTTTTTTA
1 TTTTTTTTA
85316722 ACTTGTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 8 0.29
11 1 0.04
12 19 0.68
ACGTcount: A:0.16, C:0.05, G:0.07, T:0.72
Consensus pattern (12 bp):
TTTTTTTTAGAA
Found at i:85316705 original size:12 final size:12
Alignment explanation
Indices: 85316690--85316720 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
85316680 TTTTTTTAGA
85316690 TTTTTTTCGAAT
1 TTTTTTTCGAAT
85316702 TTTTTTTCGAAT
1 TTTTTTTCGAAT
85316714 TTTTTTT
1 TTTTTTT
85316721 AACTTGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.74
Consensus pattern (12 bp):
TTTTTTTCGAAT
Found at i:85318424 original size:30 final size:30
Alignment explanation
Indices: 85318390--85318489 Score: 112
Period size: 30 Copynumber: 3.3 Consensus size: 30
85318380 TAAACTAAAA
* *
85318390 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * *
85318420 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
*
85318450 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
85318479 ATGAGCTAAGA
1 -TGAGCTAAGA
85318490 GTGAGCTCAG
Statistics
Matches: 55, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
29 1 0.02
30 54 0.98
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:85319603 original size:4 final size:4
Alignment explanation
Indices: 85319594--85319625 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
85319584 TCATGGAACA
85319594 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
85319626 TTCATCTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:85323352 original size:30 final size:29
Alignment explanation
Indices: 85323318--85323381 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 29
85323308 ATGATTCGGA
*
85323318 AGCTTTGGCACTAAGTG-GTTGATTTAAACT
1 AGCTTTGGCACTAAGTGTG-CGATTT-AACT
85323348 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
85323377 AGCTT
1 AGCTT
85323382 CGACTACTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 9 0.28
30 22 0.69
31 1 0.03
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:85324001 original size:25 final size:26
Alignment explanation
Indices: 85323972--85324023 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
85323962 AAAGGTTTAC
*
85323972 GATATGTTATGTTAATTTGCAA-TAT
1 GATATGTAATGTTAATTTGCAACTAT
85323997 GATATGTAATGTTAATTTGCAACTAT
1 GATATGTAATGTTAATTTGCAACTAT
85324023 G
1 G
85324024 GCATGAATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (26 bp):
GATATGTAATGTTAATTTGCAACTAT
Found at i:85324032 original size:25 final size:25
Alignment explanation
Indices: 85323975--85324032 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
85323965 GGTTTACGAT
* *
85323975 ATGTTATGTTAATTTGCAATATGAT
1 ATGTAATGTTAATTTGCAATATGAC
*
85324000 ATGTAATGTTAATTTGCAACTATGGC
1 ATGTAATGTTAATTTGCAA-TATGAC
85324026 ATG-AATG
1 ATGTAATG
85324033 ATGTATGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 22 0.76
26 7 0.24
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (25 bp):
ATGTAATGTTAATTTGCAATATGAC
Found at i:85325088 original size:480 final size:480
Alignment explanation
Indices: 85324185--85325128 Score: 1597
Period size: 480 Copynumber: 2.0 Consensus size: 480
85324175 CTTGTGGCCA
* * *
85324185 TGTAAGAAAAGCAGTATTCTCTAAAAAAATTACACGGCCTTGACGCACGTGCGTGTCACATGACC
1 TGTAAGAAAAGCAGTATTCTCTAAAAAAATTACACGACCTTGACACACGGGCGTGTCACATGACC
*
85324250 GTGGGCTAAAGTCAGTAGCTAGCTTAGTATCACACGGCCATAGAACACGGGCGTGCCTATTGGCC
66 GTGGGCTAAAGTCAGTAGCTAGCTTAGTATCACACAGCCATAGAACACGGGCGTGCCTATTGGCC
*
85324315 GTGGGTAAAAGTCAGTATGGTCACCCTATTTTGGCACAGTTGGTTCACATGGGTGTGTATGATGC
131 GTGGGTAAAAGTCAGTATGGTCACCCTATTTTGGCACAGCTGGTTCACATGGGTGTGTATGATGC
*
85324380 CCGTGTAAGGCACACGGCCTGGACACATGGGCATGTAACCTTAACAGAATAGAAAAATTTTCTAA
196 CCGTGTAAGGCACACGGCCTGGACACATGAGCATGTAACCTTAACAGAATAGAAAAATTTTCTAA
*
85324445 GTGTGGAAAGTTGTGAACGTGTTCGGTTTAGTCCCGACCTCTTCCTAATGCATGTTTAAGGTCTC
261 GTGTGGAAAGTTGTGAACATGTTCGGTTTAGTCCCGACCTCTTCCTAATGCATGTTTAAGGTCTC
* *
85324510 ATTGACCTAAGAAAGGGACTTATGTTGATGTTTGAATATGATGCCATGATGTTTGTGAAATGGAT
326 ATTGACCTAAGAAAGAGACTTATGTTGATGTTTGAATATGATGCCATGATGTTTGTGAAATGAAT
*
85324575 GCAAAGTGTTTTGATATGTTTAGTAACGCCGCTTAACCCTAGT-TCGGTGATGGATACGAGTTAG
391 ACAAAGTGTTTTGATATGTTTAGTAACGCCGCTTAACCCTAGTCT-GGTGATGGATACGAGTTAG
85324639 GGGTGTTACATTTGGTCCCCTGACCG
455 GGGTGTTACATTTGGTCCCCTGACCG
* *
85324665 TGTAAGAAAAGCAGTATTCTTTAAAAAAATTACACGACCTTGACACACGGGCGTGTCACATGGCC
1 TGTAAGAAAAGCAGTATTCTCTAAAAAAATTACACGACCTTGACACACGGGCGTGTCACATGACC
** * *
85324730 GTGGGCTAAAGTCAGTAGCTAGCTTAGTATCACACATTCATAGAGCGCGGGCGTGCCTATTGGCC
66 GTGGGCTAAAGTCAGTAGCTAGCTTAGTATCACACAGCCATAGAACACGGGCGTGCCTATTGGCC
* * * *
85324795 GTGGGTGAAAGTCAGTATGGTTACCCTGTTTTGGCACGGCTGGTTCACATGGGTGTGTAT-ATTG
131 GTGGGTAAAAGTCAGTATGGTCACCCTATTTTGGCACAGCTGGTTCACATGGGTGTGTATGA-TG
* *
85324859 CCCGTGTAAGGCACATGGCCTGGACACATGAGCGTGTAACCTTAACAGAATAGAAAAATTTTCTA
195 CCCGTGTAAGGCACACGGCCTGGACACATGAGCATGTAACCTTAACAGAATAGAAAAATTTTCTA
*
85324924 AGTGTGGAAAGTTGTGAACATGTTCGGTTTAGTCCCGATCTCTTCCTAATGCATGTTTAAGGTCT
260 AGTGTGGAAAGTTGTGAACATGTTCGGTTTAGTCCCGACCTCTTCCTAATGCATGTTTAAGGTCT
*
85324989 CATTGACCTAAGAAAGAGACTTATGTTGATGTTT-AACTATGATGCCATGATGTTTGTTAAATGA
325 CATTGACCTAAGAAAGAGACTTATGTTGATGTTTGAA-TATGATGCCATGATGTTTGTGAAATGA
* * *
85325053 ATACGAAGTGTTTTGATATGTTTAGTAATGCCGCTTAACCCTAGTCTGGTGATGGATACGGGTTA
389 ATACAAAGTGTTTTGATATGTTTAGTAACGCCGCTTAACCCTAGTCTGGTGATGGATACGAGTTA
85325118 GGGGTGTTACA
454 GGGGTGTTACA
85325129 AGATTATTAG
Statistics
Matches: 434, Mismatches: 27, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
479 3 0.01
480 430 0.99
481 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (480 bp):
TGTAAGAAAAGCAGTATTCTCTAAAAAAATTACACGACCTTGACACACGGGCGTGTCACATGACC
GTGGGCTAAAGTCAGTAGCTAGCTTAGTATCACACAGCCATAGAACACGGGCGTGCCTATTGGCC
GTGGGTAAAAGTCAGTATGGTCACCCTATTTTGGCACAGCTGGTTCACATGGGTGTGTATGATGC
CCGTGTAAGGCACACGGCCTGGACACATGAGCATGTAACCTTAACAGAATAGAAAAATTTTCTAA
GTGTGGAAAGTTGTGAACATGTTCGGTTTAGTCCCGACCTCTTCCTAATGCATGTTTAAGGTCTC
ATTGACCTAAGAAAGAGACTTATGTTGATGTTTGAATATGATGCCATGATGTTTGTGAAATGAAT
ACAAAGTGTTTTGATATGTTTAGTAACGCCGCTTAACCCTAGTCTGGTGATGGATACGAGTTAGG
GGTGTTACATTTGGTCCCCTGACCG
Found at i:85328429 original size:79 final size:81
Alignment explanation
Indices: 85328293--85328477 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
85328283 TTGAATGATG
* *
85328293 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
85328357 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
85328372 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
85328434 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
85328452 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85328478 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:85328491 original size:40 final size:40
Alignment explanation
Indices: 85328294--85328477 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
85328284 TGAATGATGT
* * * *
85328294 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
85328334 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
85328374 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
85328412 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
85328453 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
85328478 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:85328499 original size:79 final size:79
Alignment explanation
Indices: 85328346--85328510 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
85328336 GGACTAAGAT
* * **
85328346 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
85328411 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
85328425 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
85328488 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
85328504 CCGAAGG
1 CCGAAGG
85328511 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:85340341 original size:50 final size:49
Alignment explanation
Indices: 85340219--85340530 Score: 192
Period size: 47 Copynumber: 6.6 Consensus size: 49
85340209 GGATAAGTTG
*
85340219 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGC
* * * * *
85340268 CCAATGCCATATCCCAGACATGGTCCTACACTAGCTCTCGTAT-ATACGTG-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATC--ATCAT-CGAGC
* * * *
85340318 CTGATGCCATGTCCCAGACATGGTCTTATACTAGC-A-CAAC-TCTTAG-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATC-GAGC
* * * * * *
85340364 CCGATG-CATGACCCAGACAT-GTTTTACACTGGCTATCATCTTCGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGC
* * *
85340411 CCGATG-CATGTCCCAGACAT-GTCTTACAGTAGC-ACTCGTC-TCAATG-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCATCGA-GC
** * * * * *
85340457 AAGATGCCAT-TCCCCGACATGGTCTTACACTGGCTCTCAT-AGT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCA-TCGAGC
*
85340504 CTGATG-CATGTCCCAGACAT-GTCTTAC
1 CCGATGCCATGTCCCAGACATGGTCTTAC
85340531 CTGGCACACA
Statistics
Matches: 203, Mismatches: 42, Indels: 39
0.71 0.15 0.14
Matches are distributed among these distances:
44 10 0.05
45 15 0.07
46 39 0.19
47 66 0.33
48 2 0.01
49 34 0.17
50 32 0.16
51 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGC
Found at i:85347608 original size:29 final size:29
Alignment explanation
Indices: 85347551--85347608 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
85347541 TGTATATAAA
**
85347551 TAATTACATTTAGGCAATCATTTAGTCAC
1 TAATTACATTTAGGCAATCATAAAGTCAC
* *
85347580 TAATTACATTTAGGCAGTCATAAATTCAC
1 TAATTACATTTAGGCAATCATAAAGTCAC
85347609 ATCTTAGGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (29 bp):
TAATTACATTTAGGCAATCATAAAGTCAC
Found at i:85351290 original size:60 final size:60
Alignment explanation
Indices: 85351217--85351335 Score: 229
Period size: 60 Copynumber: 2.0 Consensus size: 60
85351207 ATTGGTCTCG
*
85351217 AATGCATGAGTTAGGCTTTGTATGCTTGATTTAAGTTCTTATTGAATGTGAATGAATAAA
1 AATGCATGAGTTAGGCTTTGTATGCTCGATTTAAGTTCTTATTGAATGTGAATGAATAAA
85351277 AATGCATGAGTTAGGCTTTGTATGCTCGATTTAAGTTCTTATTGAATGTGAATGAATAA
1 AATGCATGAGTTAGGCTTTGTATGCTCGATTTAAGTTCTTATTGAATGTGAATGAATAA
85351336 CATATACTAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (60 bp):
AATGCATGAGTTAGGCTTTGTATGCTCGATTTAAGTTCTTATTGAATGTGAATGAATAAA
Found at i:85353717 original size:40 final size:40
Alignment explanation
Indices: 85353585--85353727 Score: 191
Period size: 40 Copynumber: 3.5 Consensus size: 40
85353575 ACCCAAGTAT
* *
85353585 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATGC
85353624 CTTCGGGACTTAGCCCGG-TATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACT--T-GCACAAATGC
* * * *
85353666 CTTCGAGACTTAGCCCGGATATAGTAACTTGCACCAATAC
1 CTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATGC
85353706 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
85353728 CATCCGAATA
Statistics
Matches: 92, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
39 22 0.24
40 33 0.36
41 1 0.01
42 27 0.29
43 9 0.10
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATGC
Found at i:85363141 original size:46 final size:46
Alignment explanation
Indices: 85363088--85363263 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
85363078 TGGTTGAGCA
85363088 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATG
* * * *
85363134 TCCGAACTTGTTGAGTTGAGTTCGAGTTC-GTGA--G-TT-GTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCG-AA-T--G
* * *
85363179 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATG
* * *
85363227 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85363264 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 22
0.74 0.11 0.16
Matches are distributed among these distances:
41 1 0.01
42 4 0.04
43 2 0.02
45 3 0.03
46 60 0.58
47 26 0.25
48 3 0.03
50 1 0.01
51 3 0.03
52 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATG
Found at i:85363244 original size:93 final size:93
Alignment explanation
Indices: 85363085--85363256 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
85363075 GGATGGTTGA
* * * * *
85363085 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
85363150 TGAGTTCGAGTTCGTGAGTTGTAACTAG
66 TGAGTCCGAGTTCGTGAGTTGTAACTAG
*
85363178 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85363243 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
85363257 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGTTGTAACTAG
Found at i:85372209 original size:46 final size:47
Alignment explanation
Indices: 85372159--85372287 Score: 145
Period size: 47 Copynumber: 2.7 Consensus size: 47
85372149 ATGGATGTGT
** *
85372159 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATCAAGACGAGA
* * * *
85372205 GCTAGTGTAAAACCATGTTTGGGACATGGCATCAG-CATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATCAAGACGAGA
* *
85372253 GCAATTGTAAGACATGTCTGGGACATGCATCGGCC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
85372288 TCGAGATTTC
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
46 17 0.25
47 29 0.43
48 21 0.31
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATCAAGACGAGA
Found at i:85372413 original size:49 final size:49
Alignment explanation
Indices: 85372350--85372477 Score: 179
Period size: 49 Copynumber: 2.6 Consensus size: 49
85372340 CACGTGTCAG
*
85372350 TGTAAGACCTATTTGGGACATGGCATCGACAC-CGATAGATGAAAGCCAA
1 TGTAAGACCTATTTGGGACATGGCATCGAC-CTCGATAAATGAAAGCCAA
* * *
85372399 TGTAAGACCTATTTGGGACATGACATC-AGCCTCGATAAATGAAAGTCAG
1 TGTAAGACCTATTTGGGACATGGCATCGA-CCTCGATAAATGAAAGCCAA
*
85372448 TGTAAGACCTGTTTGGGACATGGCATCGAC
1 TGTAAGACCTATTTGGGACATGGCATCGAC
85372478 TTAGATGTCT
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
48 2 0.03
49 67 0.96
50 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTATTTGGGACATGGCATCGACCTCGATAAATGAAAGCCAA
Found at i:85374536 original size:43 final size:42
Alignment explanation
Indices: 85374485--85374654 Score: 177
Period size: 43 Copynumber: 4.0 Consensus size: 42
85374475 CATAGGATTT
*
85374485 TCGATATGTG-TTCTTGAGTAAGACCATGTTTAGGACATTGGCA
1 TCGATATGTGATTC--GAGTAAGACCATGTCTAGGACATTGGCA
* *
85374528 TTGATATGTGATTACGTGTAAGACCATGTCTAGGACATTGGCA
1 TCGATATGTGATT-CGAGTAAGACCATGTCTAGGACATTGGCA
* * * * *
85374571 TCG-TATTTGATTCGTGTAAGACC-TATCTGGGACAGTGGCA
1 TCGATATGTGATTCGAGTAAGACCATGTCTAGGACATTGGCA
* *
85374611 TCGATATGTGATTTC-ATGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGA-TTCGA-GTAAGACCATGTCTAGGACATTGGCA
85374654 T
1 T
85374655 TGTATGATAT
Statistics
Matches: 108, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
40 17 0.16
41 17 0.16
42 19 0.18
43 52 0.48
44 2 0.02
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (42 bp):
TCGATATGTGATTCGAGTAAGACCATGTCTAGGACATTGGCA
Found at i:85395871 original size:28 final size:28
Alignment explanation
Indices: 85395828--85395966 Score: 163
Period size: 28 Copynumber: 5.0 Consensus size: 28
85395818 CATAACTGTA
*
85395828 AATGTGATTGGGCCTAAT-GGCCGTATG
1 AATGTGATTGGGCCTAATGGGCCATATG
** *
85395855 AATGTGATTTGGGCCTAATGGGCCACGTA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
85395884 AATGTGATTGGGCCTAATGGGCCATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* * *
85395912 AAAGAGATTGAGCCTAATGGGCCATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
*** *
85395940 AAAAAGATTGGGCCTAATGGGCTATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
85395967 ACAGGTATGT
Statistics
Matches: 97, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
27 7 0.07
28 78 0.80
29 12 0.12
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:85399255 original size:28 final size:28
Alignment explanation
Indices: 85399215--85399288 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
85399205 CATATACCTC
* * * **
85399215 GCACGCTAAGTGCTATTTTGGATGTTTT
1 GCACACTAAGTGCCATTTTCGATACTTT
**
85399243 GCACACTAAGTGCCATCCTCGATACTTT
1 GCACACTAAGTGCCATTTTCGATACTTT
85399271 GCACACTAAGTGCCATTT
1 GCACACTAAGTGCCATTT
85399289 ATATATATAT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (28 bp):
GCACACTAAGTGCCATTTTCGATACTTT
Found at i:85399365 original size:40 final size:39
Alignment explanation
Indices: 85399300--85399385 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
85399290 TATATATATA
**
85399300 TAGCCGAAGCTATCTCAAATTGCACACCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCA-TTT
* * * *
85399340 TAGCCGAAGCTATTTCGAACCGCACACTAAGTGTCATTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCATTT
85399379 TAGCCGA
1 TAGCCGA
85399386 TAAGTCGTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCATTT
Found at i:85407612 original size:46 final size:46
Alignment explanation
Indices: 85407562--85407737 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
85407552 TGATTGAGCA
85407562 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
85407608 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
85407653 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
85407701 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85407738 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:85407718 original size:93 final size:93
Alignment explanation
Indices: 85407559--85407730 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
85407549 GGATGATTGA
*
85407559 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
85407624 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
85407652 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
85407716 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
85407731 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85410184 original size:47 final size:47
Alignment explanation
Indices: 85410115--85410456 Score: 459
Period size: 47 Copynumber: 7.1 Consensus size: 47
85410105 CATAAGCTAT
85410115 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
85410162 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
*
85410211 TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
85410258 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * **
85410307 TGACAGGGCCGAGTGGCCAACATGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
85410354 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * * * *
85410403 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
85410450 TTATAAG
1 TGATAAG
85410457 TCCCGAAGGG
Statistics
Matches: 258, Mismatches: 31, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
47 134 0.52
49 124 0.48
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:85410226 original size:49 final size:49
Alignment explanation
Indices: 85410115--85410445 Score: 467
Period size: 49 Copynumber: 6.9 Consensus size: 49
85410105 CATAAGCTAT
85410115 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
85410162 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
*
85410211 TGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
*
85410258 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
* * * * * **
85410307 TGACAGGGCCGAGTGGCCAACATGATGAATGTGAAAGTG--TATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
*
85410354 TGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
* * * * * * *
85410403 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
85410446 AATGTTATAA
Statistics
Matches: 251, Mismatches: 27, Indels: 10
0.87 0.09 0.03
Matches are distributed among these distances:
47 123 0.49
49 128 0.51
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (49 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
Found at i:85410279 original size:96 final size:96
Alignment explanation
Indices: 85410121--85410456 Score: 546
Period size: 96 Copynumber: 3.5 Consensus size: 96
85410111 CTATTGATAA
* * *
85410121 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
85410186 ATGAATGTGAAAGTGTATATATATGTGATAG
66 ATGAATGTGGAAGTGTATATATATGTGACAG
* * *
85410217 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
85410282 ATGAATGTGGAAGTGTATATATATGTGACAG
66 ATGAATGTGGAAGTGTATATATATGTGACAG
* *
85410313 GGCCGAGTGGCCAACATGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
85410378 ATGAATGTGGAAGTGTATATATATGTGACAG
66 ATGAATGTGGAAGTGTATATATATGTGACAG
* * * *
85410409 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTTATAAG
1 GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAG
85410457 TCCCGAAGGG
Statistics
Matches: 229, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 229 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (96 bp):
GGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGGAAGTGTATATATATGTGACAG
Found at i:85412501 original size:15 final size:15
Alignment explanation
Indices: 85412481--85412515 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
85412471 TTTTCAGCAC
85412481 TAAGTGTCCGGGCAA
1 TAAGTGTCCGGGCAA
*
85412496 TAAGTGTGCGGGCAA
1 TAAGTGTCCGGGCAA
85412511 TAAGT
1 TAAGT
85412516 TTTCATGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (15 bp):
TAAGTGTCCGGGCAA
Found at i:85412545 original size:43 final size:43
Alignment explanation
Indices: 85412491--85412594 Score: 181
Period size: 43 Copynumber: 2.4 Consensus size: 43
85412481 TAAGTGTCCG
* * *
85412491 GGCAATAAGTGTGCGGGCAATAAGTTTTCATGGTTGTGAGATT
1 GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
85412534 GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
85412577 GGCACTAAGTGTGCGGGC
1 GGCACTAAGTGTGCGGGC
85412595 TTGAAATGCA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.23, C:0.13, G:0.36, T:0.28
Consensus pattern (43 bp):
GGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT
Found at i:85412611 original size:29 final size:29
Alignment explanation
Indices: 85412576--85412649 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
85412566 GTTGTGAGAT
* *
85412576 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
85412605 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
85412634 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
85412650 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:85413234 original size:40 final size:40
Alignment explanation
Indices: 85412960--85413220 Score: 278
Period size: 40 Copynumber: 6.5 Consensus size: 40
85412950 TCGAATGATG
* *
85412960 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * * *
85413000 TCCGGACTAAGAT-CTGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
* *
85413040 TTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
85413080 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
85413120 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * * *
85413160 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
85413200 TCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAG
85413221 TAATCATGAT
Statistics
Matches: 183, Mismatches: 34, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 163 0.89
41 19 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:85416857 original size:47 final size:47
Alignment explanation
Indices: 85416750--85417180 Score: 693
Period size: 47 Copynumber: 9.1 Consensus size: 47
85416740 GAAATGATAG
85416750 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
85416799 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85416846 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85416893 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85416940 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85416986 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
85417033 TAGGGCCTAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
85417080 TAAGGCCTAAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
85417130 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85417177 TAAG
1 TAAG
85417181 TCCCGAAGGG
Statistics
Matches: 358, Mismatches: 20, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 46 0.13
47 213 0.59
48 24 0.07
49 59 0.16
50 16 0.04
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:85417005 original size:140 final size:141
Alignment explanation
Indices: 85416750--85417180 Score: 693
Period size: 140 Copynumber: 3.0 Consensus size: 141
85416740 GAAATGATAG
85416750 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
85416815 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
64 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
85416880 TGTATATATGTGA
129 TGTATATATGTGA
85416893 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
85416957 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
85417022 TATATATGTGA
131 TATATATGTGA
* * * *
85417033 TAGGGCCTAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAATGGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGA
* * * * * * * *
85417098 TGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
65 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
85417163 GTGTATAAATGTGA
128 GTGTATATATGTGA
85417177 TAAG
1 TAAG
85417181 TCCCGAAGGG
Statistics
Matches: 270, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
140 136 0.50
141 18 0.07
142 27 0.10
143 36 0.13
144 53 0.20
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (141 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGA
Found at i:85417069 original size:187 final size:189
Alignment explanation
Indices: 85416752--85417180 Score: 700
Period size: 187 Copynumber: 2.3 Consensus size: 189
85416742 AATGATAGTA
85416752 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
* *
85416817 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
64 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTG
*
85416882 TATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGAT
129 TATATATGTGATAAGGCCTAAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGAC
85416941 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
85417006 GATGAATGTGAAAGTGTATATATGTGATAGGGCCTAGTGGCCAACGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTA
*
85417071 TATATGTGATAAGGCCTAAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGAC
131 TATATGTGATAAGGCCTAAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGAC
* * * * * *
85417131 AGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 A-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
85417181 TCCCGAAGGG
Statistics
Matches: 224, Mismatches: 12, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
187 109 0.49
188 27 0.12
189 34 0.15
190 12 0.05
191 42 0.19
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (189 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCTAAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGAC
Found at i:85426007 original size:46 final size:46
Alignment explanation
Indices: 85425957--85426132 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
85425947 TGATTGAGCA
85425957 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACTG
* * *
85426003 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACT--G
* *
85426048 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCAACCG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACTG
* *
85426096 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85426133 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 28 0.25
48 3 0.03
50 7 0.06
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACTG
Found at i:85426113 original size:93 final size:93
Alignment explanation
Indices: 85425954--85426125 Score: 285
Period size: 93 Copynumber: 1.8 Consensus size: 93
85425944 GGATGATTGA
*
85425954 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
85426019 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
85426047 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGC-AACCG-CCTGAGCTCGTTGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CGTCC-GAACTCGTTGA
85426110 GTTGAGTCCGAGTTCG
64 GTTGAGTCCGAGTTCG
85426126 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
92 4 0.05
93 70 0.95
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85432898 original size:41 final size:41
Alignment explanation
Indices: 85432841--85432923 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
85432831 AAAATAGGAG
*
85432841 TAAATAAAGGAAATATGATATCATCCCTTTTTCATCTTCTT
1 TAAATAAAAGAAATATGATATCATCCCTTTTTCATCTTCTT
85432882 TAAATAAAAGAAATATGATATCATCCCTTTTTCATCTTCTT
1 TAAATAAAAGAAATATGATATCATCCCTTTTTCATCTTCTT
85432923 T
1 T
85432924 TTCCACCGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42
Consensus pattern (41 bp):
TAAATAAAAGAAATATGATATCATCCCTTTTTCATCTTCTT
Found at i:85434955 original size:46 final size:45
Alignment explanation
Indices: 85434888--85435059 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 45
85434878 AACCCGCCCC
* *
85434888 TAAGTGAACTCGGAGTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
* * *
85434934 TAAGTGAACTCGGACTTAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * ** *
85434982 TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCA
85435027 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
85435060 ATGCCCAAAC
Statistics
Matches: 102, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 57 0.56
47 26 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:85435001 original size:93 final size:93
Alignment explanation
Indices: 85434893--85435064 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
85434883 GCCCCTAAGT
* ** * *
85434893 GAACTCGGAGTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
85434958 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
85434986 GAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
85435051 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
85435065 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:85435079 original size:46 final size:47
Alignment explanation
Indices: 85434886--85435079 Score: 161
Period size: 46 Copynumber: 4.2 Consensus size: 47
85434876 GTAACCCGCC
* * * *
85434886 CCTAAGTGAACTCGGAGTCAACTCAACGAGCTCGG--GCGT-TCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAT-ACAT
*
85434931 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACAT
* * * * * * *
85434981 -TTCA-CGAACTCGGACTCAACTCAACGAGTTC-GA-ACATTTGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACAT
* *
85435024 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACAT
85435072 CCT-AGTGA
1 CCTAAGTGA
85435080 CATGTCACTT
Statistics
Matches: 116, Mismatches: 22, Indels: 21
0.73 0.14 0.13
Matches are distributed among these distances:
43 4 0.03
45 6 0.05
46 63 0.54
47 28 0.24
48 11 0.09
50 3 0.03
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (47 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACAT
Found at i:85435520 original size:30 final size:30
Alignment explanation
Indices: 85435486--85435545 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
85435476 ATTTAATACG
85435486 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
85435516 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
85435546 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:85436663 original size:46 final size:46
Alignment explanation
Indices: 85436577--85436736 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 46
85436567 ATGAGAGCTT
* *
85436577 GTGTAAGACTATGTCTGGGACATGGCATCGGCATTGAGACGAGTGTCA
1 GTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTCGAGACGAGTGTCA
* *
85436625 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA-AGACA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AGTGTCA
* * *
85436671 GTGTAAGACATGTCTTAGG-CATGCATCAG-CTACGAGA--TGTGTCA
1 GTGTAAGACATGTC-TGGGACATGCATCGGCCT-CGAGACGAGTGTCA
*
85436715 GTGTAAGACCATGTTTGGGACA
1 GTGTAAGA-CATGTCTGGGACA
85436737 CGTCATCCGC
Statistics
Matches: 95, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
44 14 0.15
45 9 0.09
46 46 0.48
47 17 0.18
48 9 0.09
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGTGTCA
Found at i:85442618 original size:29 final size:29
Alignment explanation
Indices: 85442555--85442658 Score: 113
Period size: 29 Copynumber: 3.6 Consensus size: 29
85442545 TTCATATACC
* * * *
85442555 TGTATCTGGCCCACTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
85442583 T-TCATATGGTCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
85442612 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
85442641 TTTATATGGCCCGTTAGG
1 TGTATATGGCCCATTAGG
85442659 ACCAGTCACA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
27 1 0.02
28 15 0.24
29 46 0.73
30 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:85442919 original size:8 final size:8
Alignment explanation
Indices: 85442886--85442936 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
85442876 GTAGCCAAAC
*
85442886 TTTCAGCT
1 TTTCGGCT
85442894 TTTCGGCAT
1 TTTCGGC-T
85442903 TTT-GGCT
1 TTTCGGCT
85442910 TTTCGGCT
1 TTTCGGCT
* *
85442918 TTTCGACA
1 TTTCGGCT
*
85442926 TTTCAGCT
1 TTTCGGCT
85442934 TTT
1 TTT
85442937 GCCGATACAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 4 0.11
8 27 0.77
9 4 0.11
ACGTcount: A:0.10, C:0.22, G:0.18, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:85444075 original size:26 final size:26
Alignment explanation
Indices: 85444046--85444102 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
85444036 TGATACAAAT
85444046 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85444072 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85444098 TGATA
1 TGATA
85444103 GGAATTTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85446663 original size:39 final size:39
Alignment explanation
Indices: 85446616--85446870 Score: 395
Period size: 39 Copynumber: 6.5 Consensus size: 39
85446606 GTGTGAGATA
* *
85446616 TATATCCGGGCTAATTCCCGAAGGTATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
85446655 TATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
85446694 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
85446733 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
85446772 TATACCCGGGCTAAGTCCCGAAGGCATTCGTGATGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
** * *
85446811 TATATCCGGGCTAAGTCTTGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
85446849 TACATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
85446871 CATGCTTTGT
Statistics
Matches: 199, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
38 20 0.10
39 173 0.87
40 6 0.03
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:85446822 original size:117 final size:116
Alignment explanation
Indices: 85446583--85446870 Score: 393
Period size: 117 Copynumber: 2.5 Consensus size: 116
85446573 AGGATTTTAA
* * * *
85446583 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAG-ATATATATCCGGGCTAATTCCCGAAGGTATTC
1 CCGGGCTAAGTCCCGAAGG-CTTCGTGCTG-GTAT-TATATCCGGGCTAAGTCCCGAAGGCATTC
* * *
85446645 GTGCTGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTGTTATAT
63 GTGCTGGTGTTATACCCGGGCTAAGTCCCGAAGGCATTCGTGATGGTGTTATAT
*
85446699 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGC-TTCGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGT
85446764 GCTGGTGTTATACCCGGGCTAAGTCCCGAAGGCATTCGTGATGGTGTTATAT
65 GCTGGTGTTATACCCGGGCTAAGTCCCGAAGGCATTCGTGATGGTGTTATAT
** * *
85446816 CCGGGCTAAGTCTTGAAGGCTTTGTGCTGGTATTACATCCGGGCTTAAAGTCCCG
1 CCGGGCTAAGTCCCGAAGGCTTCGTGCTGGTATTATATCCGGGC-T-AAGTCCCG
85446871 CATGCTTTGT
Statistics
Matches: 153, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
115 1 0.01
116 40 0.26
117 101 0.66
118 11 0.07
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (116 bp):
CCGGGCTAAGTCCCGAAGGCTTCGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
CTGGTGTTATACCCGGGCTAAGTCCCGAAGGCATTCGTGATGGTGTTATAT
Found at i:85453662 original size:46 final size:46
Alignment explanation
Indices: 85453612--85453784 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
85453602 TGGTTGAGCA
* *
85453612 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
85453658 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* * *
85453705 TCCGAACTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
85453751 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
85453785 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:85453768 original size:93 final size:93
Alignment explanation
Indices: 85453609--85453779 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
85453599 GGATGGTTGA
* *
85453609 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
85453674 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * ** *
85453702 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
85453767 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85453780 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85454045 original size:19 final size:20
Alignment explanation
Indices: 85454008--85454045 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
85453998 ATAAGGTGGT
85454008 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
85454028 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
85454046 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:85455591 original size:13 final size:13
Alignment explanation
Indices: 85455573--85455597 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85455563 TTGATAAAAT
85455573 CATAATATATAAG
1 CATAATATATAAG
85455586 CATAATATATAA
1 CATAATATATAA
85455598 ATTGTGACCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (13 bp):
CATAATATATAAG
Found at i:85455920 original size:39 final size:39
Alignment explanation
Indices: 85455873--85456125 Score: 357
Period size: 39 Copynumber: 6.5 Consensus size: 39
85455863 GTGAGATATC
*
85455873 TATCCGGGCTAATTCCCGAAGGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
85455912 TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
* ** *
85455951 TATCCAGGCTAAGTCTTGAAGGCATTCGTGCTAGTGTTA
1 TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
**
85455990 TATCCGGGCTAAGTCTGGAAGGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
*
85456029 TA-CACGGGCTAAGTCCCGAAGGTATTCGTGCTGGTGTTA
1 TATC-CGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
* * *
85456068 TATCCGGGCTAAGTCCTGAAGGC-TTTGTGCTGGTATTA
1 TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
*
85456106 CATCCGGGCTTAAAGTCCCG
1 TATCCGGGC-T-AAGTCCCG
85456126 CATGCTTTGT
Statistics
Matches: 193, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 22 0.11
39 163 0.84
40 8 0.04
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (39 bp):
TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
Found at i:85458851 original size:27 final size:27
Alignment explanation
Indices: 85458813--85458947 Score: 152
Period size: 27 Copynumber: 5.0 Consensus size: 27
85458803 GAAGCGTCCA
85458813 GGTGGCTATGCCACAATTATCTAATCT
1 GGTGGCTATGCCACAATTATCTAATCT
* *
85458840 GGTGGCTCTGCCAC-ATATATCT-GTCTT
1 GGTGGCTATGCCACAAT-TATCTAATC-T
85458867 GGTGGCTATGCCACAATTATCTAATCT
1 GGTGGCTATGCCACAATTATCTAATCT
* **
85458894 GGTGGCTCTGCCAC-ATATATCTGTTCT
1 GGTGGCTATGCCACAAT-TATCTAATCT
*
85458921 GGTGGCTTTGCCACAA-TATCTATATCT
1 GGTGGCTATGCCACAATTATCTA-ATCT
85458948 AGTGACTTCG
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
26 11 0.12
27 75 0.82
28 5 0.05
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTGGCTATGCCACAATTATCTAATCT
Found at i:85458895 original size:54 final size:54
Alignment explanation
Indices: 85458813--85458947 Score: 229
Period size: 54 Copynumber: 2.5 Consensus size: 54
85458803 GAAGCGTCCA
85458813 GGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTG-TCTT
1 GGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTTC-T
85458867 GGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTTCT
1 GGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTTCT
*
85458921 GGTGGCTTTGCCACAA-TATCTATATCT
1 GGTGGCTATGCCACAATTATCTA-ATCT
85458948 AGTGACTTCG
Statistics
Matches: 78, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
53 6 0.08
54 70 0.90
55 2 0.03
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (54 bp):
GGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTTCT
Found at i:85458963 original size:81 final size:80
Alignment explanation
Indices: 85458813--85458968 Score: 174
Period size: 81 Copynumber: 1.9 Consensus size: 80
85458803 GAAGCGTCCA
* * * *
85458813 GGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCTTGGTGGCTATGC
1 GGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTATATTAGTGACTATGC
85458878 CACAATTATCTAATCT
66 CACAA-TATCTAATCT
* ** *
85458894 GGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTTTGCCACA-ATATCTATATCTAGTGACT-T
1 GGTGGCTATGCCACAAT-TATCTAATCTGGTGGCTCTGCCACATATATCTATAT-TAGTGACTAT
*
85458956 CGTCACAATATCT
64 -GCCACAATATCT
85458969 GGCAGCCTCG
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
80 16 0.25
81 47 0.75
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (80 bp):
GGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTATATTAGTGACTATGC
CACAATATCTAATCT
Found at i:85464252 original size:15 final size:15
Alignment explanation
Indices: 85464232--85464262 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
85464222 TGGGTTAGGT
85464232 AAATGTTCCATGATA
1 AAATGTTCCATGATA
85464247 AAATGTTCCATGATA
1 AAATGTTCCATGATA
85464262 A
1 A
85464263 TGGGTTAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (15 bp):
AAATGTTCCATGATA
Found at i:85464279 original size:26 final size:26
Alignment explanation
Indices: 85464247--85464338 Score: 175
Period size: 26 Copynumber: 3.5 Consensus size: 26
85464237 TTCCATGATA
85464247 AAATGTTCCATGATAATGGGTTAGGT
1 AAATGTTCCATGATAATGGGTTAGGT
*
85464273 AAATGTTTCATGATAATGGGTTAGGT
1 AAATGTTCCATGATAATGGGTTAGGT
85464299 AAATGTTCCATGATAATGGGTTAGGT
1 AAATGTTCCATGATAATGGGTTAGGT
85464325 AAATGTTCCATGAT
1 AAATGTTCCATGAT
85464339 GGGAATTTCA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 64 1.00
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.36
Consensus pattern (26 bp):
AAATGTTCCATGATAATGGGTTAGGT
Found at i:85465973 original size:27 final size:27
Alignment explanation
Indices: 85465933--85466073 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
85465923 AGGAAGTGTC
* *
85465933 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
85465960 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
85465986 CCTAGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
85466014 CTAGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
85466041 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
85466068 CTGGTG
1 CTGGTG
85466074 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 84 0.85
28 4 0.04
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:85466021 original size:54 final size:54
Alignment explanation
Indices: 85465929--85466069 Score: 221
Period size: 54 Copynumber: 2.6 Consensus size: 54
85465919 ATGGAGGAAG
* *
85465929 TGTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATC
*
85465983 TGTCCTAGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATC
1 TGTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATC
* *
85466037 TGTTCTGGTGGCTCTGCCACAA-TATCTGTATCT
1 TGTCCTGGTGGCTATGCCACAATTATCTG-ATCT
85466070 GGTGACTTCG
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.08
54 74 0.93
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.35
Consensus pattern (54 bp):
TGTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATC
Found at i:85466084 original size:27 final size:26
Alignment explanation
Indices: 85465933--85466091 Score: 131
Period size: 27 Copynumber: 5.9 Consensus size: 26
85465923 AGGAAGTGTC
* * **
85465933 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
85465960 CTGGTGGCTCTGCCACATATATCTGTC
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * * *
85465987 CTAGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
85466014 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
85466041 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
85466068 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
85466092 GCAGCCTTGC
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
26 10 0.09
27 102 0.89
28 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:85466085 original size:81 final size:80
Alignment explanation
Indices: 85465936--85466091 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 80
85465926 AAGTGTCCTG
*
85465936 GTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTAGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTAGTGACTATGCC
85466001 ACAATTATCTGATCTA
66 ACAA-TATCTGATCTA
* ** * *
85466017 GTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT-TC
1 GTGGCTATGCCACAAT-TATCTAATCTGGTGGCTCTGCCACATATATCTGT-CCTAGTGACTAT-
*
85466079 GTCACAATATCTG
63 GCCACAATATCTG
85466092 GCAGCCTTGC
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
80 17 0.26
81 48 0.74
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (80 bp):
GTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTAGTGACTATGCC
ACAATATCTGATCTA
Found at i:85467356 original size:16 final size:16
Alignment explanation
Indices: 85467335--85467383 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
85467325 AGAAAATTGG
85467335 GGATTTCGGGATTTTT
1 GGATTTCGGGATTTTT
*
85467351 GGATTTCGAGATTTTT
1 GGATTTCGGGATTTTT
85467367 GGATTTCGGGATTTTT
1 GGATTTCGGGATTTTT
85467383 G
1 G
85467384 TGGCATTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.14, C:0.06, G:0.31, T:0.49
Consensus pattern (16 bp):
GGATTTCGGGATTTTT
Found at i:85472434 original size:28 final size:28
Alignment explanation
Indices: 85472402--85472455 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
85472392 TCAACAGATA
85472402 TACATAAATACAAGTAAATTATCAAATT
1 TACATAAATACAAGTAAATTATCAAATT
85472430 TACATAAATACAAGTAAATTATCAAA
1 TACATAAATACAAGTAAATTATCAAA
85472456 ATTTGAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.56, C:0.11, G:0.04, T:0.30
Consensus pattern (28 bp):
TACATAAATACAAGTAAATTATCAAATT
Found at i:85475598 original size:28 final size:29
Alignment explanation
Indices: 85475566--85475680 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
85475556 TACCTGTATC
* * *
85475566 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
85475594 TGGCCCATTAGGCCCAAATCATC-TGT-ATA
1 TGGCCCATTAGGCCCAAATCA-CAT-TCATA
*
85475623 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
85475652 TAGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
85475680 T
1 T
85475681 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
28 27 0.36
29 47 0.63
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:85477035 original size:8 final size:8
Alignment explanation
Indices: 85477017--85477050 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
85477007 ATAAAGAAAA
85477017 TTTGAGATT
1 TTTG-GATT
85477026 TTTGGATT
1 TTTGGATT
*
85477034 TTGGGATT
1 TTTGGATT
85477042 TTTGGATT
1 TTTGGATT
85477050 T
1 T
85477051 CGAGATTTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 19 0.83
9 4 0.17
ACGTcount: A:0.15, C:0.00, G:0.26, T:0.59
Consensus pattern (8 bp):
TTTGGATT
Found at i:85477036 original size:16 final size:16
Alignment explanation
Indices: 85477017--85477058 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
85477007 ATAAAGAAAA
85477017 TTTGAGATTTTTGGAT
1 TTTGAGATTTTTGGAT
*
85477033 TTTGGGATTTTTGGAT
1 TTTGAGATTTTTGGAT
*
85477049 TTCGAGATTT
1 TTTGAGATTT
85477059 CGGGATCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.17, C:0.02, G:0.26, T:0.55
Consensus pattern (16 bp):
TTTGAGATTTTTGGAT
Found at i:85482662 original size:46 final size:46
Alignment explanation
Indices: 85482498--85482706 Score: 152
Period size: 46 Copynumber: 4.5 Consensus size: 46
85482488 TTATTGTGAA
* *
85482498 CTAGTGTAAGACATGTCTGGGACATGCATC-AGCCAC-ATTATAAG-AG-
1 CTAGTGTAAGACATGTCTGGGACATGCATCGA-CCTCGA-GAT--GTAGT
* * * *
85482544 CTTGTGTAAGACCATGTCTGGGACATGGCATTGACATTGAGATG-AGT
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGATGTAGT
* **
85482591 GCTAGTGTAAGA-ATTATCTAAGACATGCATCGACCTCGAGATGTAAGT
1 -CTAGTGTAAGACA-TGTCTGGGACATGCATCGACCTCGAGATGT-AGT
85482639 C-AGTGTAAGACATGTCTGGGACATGCATCTG--CTACGAGATGT-GT
1 CTAGTGTAAGACATGTCTGGGACATGCATC-GACCT-CGAGATGTAGT
85482683 C-AGTGTAAGACCATGTCTGGGACA
1 CTAGTGTAAGA-CATGTCTGGGACA
85482707 CGACATCAGC
Statistics
Matches: 134, Mismatches: 16, Indels: 27
0.76 0.09 0.15
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 59 0.44
47 26 0.19
48 20 0.15
49 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAGT
Found at i:85483861 original size:20 final size:20
Alignment explanation
Indices: 85483833--85483870 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
85483823 GAATTAATTC
*
85483833 CACATGGGCGTATGCCCTTA
1 CACACGGGCGTATGCCCTTA
*
85483853 CACACGGGCGTGTGCCCT
1 CACACGGGCGTATGCCCT
85483871 GTTTCAAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.34, G:0.29, T:0.21
Consensus pattern (20 bp):
CACACGGGCGTATGCCCTTA
Found at i:85486084 original size:45 final size:45
Alignment explanation
Indices: 85486020--85486176 Score: 185
Period size: 45 Copynumber: 3.5 Consensus size: 45
85486010 CCCCTGATAT
* *
85486020 GGTCTTACAC-ATAACCACATAGATCGATGCCAATGTCCCAGATGC
1 GGTCTTACACGA-AAACACATATATCGATGCCAATGTCCCAGATGC
* *
85486065 GGTCTTACACGAAAACACATATATTGATGCCAATGTCCTAGACAT-C
1 GGTCTTACACGAAAACACATATATCGATGCCAATGTCCCAG--ATGC
* * * *
85486111 -GTCTTACACGAAAACACATATATCGATGACAACGTCCCAGACGT
1 GGTCTTACACGAAAACACATATATCGATGCCAATGTCCCAGATGC
*
85486155 GGTCTTACACAAAAACACATAT
1 GGTCTTACACGAAAACACATAT
85486177 TATAATCTTG
Statistics
Matches: 96, Mismatches: 11, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.01
45 91 0.95
46 2 0.02
47 2 0.02
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (45 bp):
GGTCTTACACGAAAACACATATATCGATGCCAATGTCCCAGATGC
Found at i:85487573 original size:18 final size:19
Alignment explanation
Indices: 85487540--85487575 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
85487530 TTAAATTTAG
*
85487540 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
85487559 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
85487576 GTGCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:85488059 original size:64 final size:64
Alignment explanation
Indices: 85487979--85488160 Score: 208
Period size: 66 Copynumber: 2.8 Consensus size: 64
85487969 AGACATTATG
* * *
85487979 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGATACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGATACGAGATAA
* * * * * *
85488043 ATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGATACGAGATA
85488108 A
64 A
* *
85488109 AT-TAGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
85488161 CTGAACTATA
Statistics
Matches: 98, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 25 0.26
65 22 0.22
66 32 0.33
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGATACGAGATAA
Found at i:85493433 original size:33 final size:33
Alignment explanation
Indices: 85493396--85493463 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
85493386 TATCAAAACA
85493396 ACCACATAAGTCACATAATAATGCCGAACACTT
1 ACCACATAAGTCACATAATAATGCCGAACACTT
*
85493429 ACCACATAAGTCACATAATAATGCTGAACACTT
1 ACCACATAAGTCACATAATAATGCCGAACACTT
85493462 AC
1 AC
85493464 TTATGCTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.22
Consensus pattern (33 bp):
ACCACATAAGTCACATAATAATGCCGAACACTT
Found at i:85494616 original size:40 final size:39
Alignment explanation
Indices: 85494553--85494737 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 39
85494543 TCGGATGATA
* * * *
85494553 ACCGGGCTAAGTCTCG-AGAGCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTAAT
*
85494593 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT
* *
85494633 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT
*
85494672 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-AT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT
85494711 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
85494738 AGCTAGTGGC
Statistics
Matches: 132, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 38 0.29
40 91 0.69
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAT
Found at i:85494688 original size:39 final size:39
Alignment explanation
Indices: 85494594--85494737 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 39
85494584 GTGGCTAATT
* * *
85494594 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTATA
85494634 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
* *
85494673 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT-A
85494713 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
85494738 AGCTAGTGGC
Statistics
Matches: 98, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 39 0.40
40 59 0.60
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
Found at i:85494751 original size:40 final size:40
Alignment explanation
Indices: 85494550--85494760 Score: 211
Period size: 40 Copynumber: 5.3 Consensus size: 40
85494540 TGTTCGGATG
* *
85494550 ATAACCGGGCTAAGTCTCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGGCT
* *
85494590 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGCT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
* ***
85494627 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 A-TAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
* **
85494670 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
*
85494709 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
*
85494749 ATATCC-GGCTAA
1 ATAACCGGGCTAA
85494761 ACTCCGAAGG
Statistics
Matches: 146, Mismatches: 15, Indels: 21
0.80 0.08 0.12
Matches are distributed among these distances:
37 4 0.03
38 1 0.01
39 44 0.30
40 90 0.62
41 3 0.02
42 2 0.01
43 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
Found at i:85494770 original size:79 final size:80
Alignment explanation
Indices: 85494550--85494760 Score: 279
Period size: 79 Copynumber: 2.7 Consensus size: 80
85494540 TGTTCGGATG
*
85494550 ATAACCGGGCTAAGTCTCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGG
*
85494613 CATTTGTGCGAGCTACT
64 CATTTGTGCAAGCTACT
* * * ***
85494630 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGC
*
85494693 ATTTGTGCAAGTTACT
65 ATTTGTGCAAGCTACT
85494709 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAA
85494761 ACTCCGAAGG
Statistics
Matches: 111, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
79 76 0.68
80 32 0.29
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCAAGCTACT
Found at i:85501712 original size:40 final size:39
Alignment explanation
Indices: 85501654--85501913 Score: 319
Period size: 40 Copynumber: 6.5 Consensus size: 39
85501644 TGATAATCGA
* * *
85501654 GCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCCGG
1 GCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTAATTCCGG
*
85501694 GCTAAGTCCCGAAGGCATTTGTCCGAGCTACTAATTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATTCCGG
**
85501734 GCTAAGTTACGAAGGCATTTGTGCGAGCTACTAATTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATTCCGG
*
85501774 GCTAAGTCCCGAAGGCATTTGTGTGAGCTACTAATTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATTCCGG
* * *
85501814 GCTAAGTCCCGAAGGCATTTGTACGAGTTA-TTATACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATTCCGG
* *
85501853 GCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT-TCCGG
85501893 GCTAAGTCCCGAAGGCATTTG
1 GCTAAGTCCCGAAGGCATTTG
85501914 AGCTAGTGGC
Statistics
Matches: 199, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
39 37 0.19
40 159 0.80
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATTCCGG
Found at i:85501946 original size:39 final size:40
Alignment explanation
Indices: 85501654--85501946 Score: 133
Period size: 40 Copynumber: 7.4 Consensus size: 40
85501644 TGATAATCGA
* * * *
85501654 GCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGG
1 GCTAACTCCCGAAG-GCATTTGAGCAAGTGACTATA-ACCGG
* ** * *
85501694 GCTAAGTCCCGAAGGCATTTGTCCGAGCT-ACTA-ATTCCGG
1 GCTAACTCCCGAAGGCATTTGAGCAAG-TGACTATA-ACCGG
* ** * * *
85501734 GCTAAGTTACGAAGGCATTTGTGCGAGCT-ACTA-ATTCCGG
1 GCTAACTCCCGAAGGCATTTGAGCAAG-TGACTATA-ACCGG
* * ** *
85501774 GCTAAGTCCCGAAGGCATTTGTGTGAGCT-ACTA-ATTCCGG
1 GCTAACTCCCGAAGGCATTTGAGCAAG-TGACTATA-ACCGG
* * * *
85501814 GCTAAGTCCCGAAGGCATTTGTA-CGAGTTATTAT-ACCGG
1 GCTAACTCCCGAAGGCATTTG-AGCAAGTGACTATAACCGG
* * *
85501853 GCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGG
1 GCTAACTCCCGAAGGCATTTGAGCAAGTGACTATAACCGG
* * * *
85501893 GCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-G
1 GCTAACTCCCGAAGGCATTTGAGCAAGTGACTATAACCGG
85501932 GCTAAACT-CCGAAGG
1 GCT-AACTCCCGAAGG
85501947 TACTTGGTTT
Statistics
Matches: 222, Mismatches: 23, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
39 46 0.21
40 173 0.78
41 3 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
GCTAACTCCCGAAGGCATTTGAGCAAGTGACTATAACCGG
Found at i:85527857 original size:43 final size:42
Alignment explanation
Indices: 85527703--85527858 Score: 113
Period size: 43 Copynumber: 3.6 Consensus size: 42
85527693 ATATTTTTGA
* * * *
85527703 GTAAGACCACGTCTGTAACGTTGGCATCGA-CTTACGATTTATGT
1 GTAAGACCACGTCTGGAACGTTGGCATC-ATATTTC-A-TTACGT
* * * * * *
85527747 GTAAGAACACGTCTGGGACGTTTGCATCGTATTTGATTTCGT
1 GTAAGACCACGTCTGGAACGTTGGCATCATATTTCATTACGT
* *
85527789 GTAAGACC-CTATCTAGGATA-G-TGGCATCTATATTTCATTACAT
1 GTAAGACCAC-GTCT-GGA-ACGTTGGCATC-ATATTTCATTACGT
85527832 GTAAGACCACGTCTGGAACGTTGGCAT
1 GTAAGACCACGTCTGGAACGTTGGCAT
85527859 TGTATGAGCT
Statistics
Matches: 85, Mismatches: 19, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
41 2 0.02
42 24 0.28
43 31 0.36
44 28 0.33
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (42 bp):
GTAAGACCACGTCTGGAACGTTGGCATCATATTTCATTACGT
Found at i:85535051 original size:27 final size:28
Alignment explanation
Indices: 85534942--85535064 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
85534932 GAGATTGGCG
* * * *
85534942 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
85534971 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
85534999 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
85535027 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
85535054 CTGAGTGTGCG
1 CTAAGTGTGCG
85535065 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:85535054 original size:55 final size:57
Alignment explanation
Indices: 85534942--85535064 Score: 169
Period size: 55 Copynumber: 2.2 Consensus size: 57
85534932 GAGATTGGCG
* * * *
85534942 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
* *
85534999 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
*
85535054 CTGAGTGTGCG
1 CTAAGTGTGCG
85535065 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.39
56 21 0.36
57 15 0.25
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
Found at i:85535075 original size:27 final size:27
Alignment explanation
Indices: 85534967--85535077 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
85534957 TAAATTGTAC
** * *
85534967 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
85534995 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
85535023 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
85535050 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
85535077 A
1 A
85535078 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:85538243 original size:27 final size:27
Alignment explanation
Indices: 85538213--85538329 Score: 85
Period size: 27 Copynumber: 4.3 Consensus size: 27
85538203 GGCATGATCT
* *
85538213 TCATATTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
85538240 TCATTTTGCTC-TACAAGGGTATTTCGA
1 TCATTTTAC-CATACAAGGGTATTACGG
* *
85538267 TAATTTTA-CACTACAAGGGTATTTCGG
1 TCATTTTACCA-TACAAGGGTATTACGG
* * * * *
85538294 TCATTTTCCCCTATAGGGGCATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
*
85538321 TCAATTTAC
1 TCATTTTAC
85538330 AAACTATGGT
Statistics
Matches: 69, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
25 1 0.01
27 66 0.96
28 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:85540189 original size:25 final size:25
Alignment explanation
Indices: 85540155--85540204 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
85540145 CACCACTGAA
* *
85540155 TCGGGGAATCATCACTTAGCAACCC
1 TCGGGGAATCAGCACATAGCAACCC
85540180 TCGGGGAATCAGCACATAGCAACCC
1 TCGGGGAATCAGCACATAGCAACCC
85540205 CCTTTTCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.30, C:0.32, G:0.22, T:0.16
Consensus pattern (25 bp):
TCGGGGAATCAGCACATAGCAACCC
Found at i:85547824 original size:70 final size:72
Alignment explanation
Indices: 85547710--85547860 Score: 234
Period size: 71 Copynumber: 2.1 Consensus size: 72
85547700 GGGGAATCAT
* *
85547710 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
85547774 GATATCG
66 GATATCG
***
85547781 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
85547845 GATATCG
66 GATATCG
*
85547852 TACTTAGCA
1 CACTTAGCA
85547861 CCACCAATGA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
70 28 0.38
71 45 0.62
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (72 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
GATATCG
Found at i:85547964 original size:104 final size:103
Alignment explanation
Indices: 85547780--85548002 Score: 349
Period size: 104 Copynumber: 2.2 Consensus size: 103
85547770 AATGGATATC
85547780 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* * *
85547845 GATATCGTACTTAGCACCACCAATGAACCGGGGAATCA
66 GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
*
85547883 GCACTTAGCAACCCCTCGGGGGAATCATCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
85547948 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
65 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
85547987 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
85548003 TTTATATACA
Statistics
Matches: 110, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
103 17 0.15
104 92 0.84
105 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.19
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:85548393 original size:30 final size:30
Alignment explanation
Indices: 85548334--85548394 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
85548324 TCCACCACCC
* *
85548334 AACTTTTTGAAAATTACAATTTTGCCCCCA
1 AACTTTTTCAAAATTACAATTTTACCCCCA
* * *
85548364 AACTTTTTCATAATTACACTTTTATCCCCA
1 AACTTTTTCAAAATTACAATTTTACCCCCA
85548394 A
1 A
85548395 GCTCGGAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.39
Consensus pattern (30 bp):
AACTTTTTCAAAATTACAATTTTACCCCCA
Found at i:85550073 original size:42 final size:41
Alignment explanation
Indices: 85549964--85550128 Score: 136
Period size: 43 Copynumber: 3.9 Consensus size: 41
85549954 AGCTCATACA
* * *
85549964 ATGCCAACGTCCCAAACATGGTCTTACATGTAATCAACTATC-
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAA--ATCG
* * *
85550006 AGTGCC-ACTGTCCTACACAAGGTCTTACACGAAATCAAATACG
1 A-TGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAAT-CG
* * *
85550049 ATGTCGATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAA--TCAAATCG
* * *
85550093 ATGCCAACGTCCCAGACTTTGTCTTACATGAAATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
85550129 CGTATCGAAA
Statistics
Matches: 99, Mismatches: 16, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
41 5 0.05
42 26 0.26
43 36 0.36
44 26 0.26
45 6 0.06
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATCG
Found at i:85554481 original size:51 final size:51
Alignment explanation
Indices: 85554403--85554560 Score: 142
Period size: 51 Copynumber: 3.1 Consensus size: 51
85554393 GACCTTCACG
* * *** * *
85554403 TAGTACCACACTTGTGACGAATGCTATCTTTTACACATAGTGGTCAGCACT
1 TAGTACCACACATGTGACAAATGCTATCGGGTACACATAGTAGCCAGCACT
* *
85554454 TAGTACCACACATGTGATCAAAT-CTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTACCACACATGTGA-CAAATGCTATCGGGTACACATAGTAGCCAGCACT
* * * * * *
85554505 TAGTACTACACATGAGACCTAA--CCATCTGGTACACATAGTAGCCTGCACT
1 TAGTACCACACATGTGA-CAAATGCTATCGGGTACACATAGTAGCCAGCACT
85554555 TAGTAC
1 TAGTAC
85554561 TGCACACGTG
Statistics
Matches: 90, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
50 31 0.34
51 55 0.61
52 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (51 bp):
TAGTACCACACATGTGACAAATGCTATCGGGTACACATAGTAGCCAGCACT
Found at i:85554551 original size:50 final size:51
Alignment explanation
Indices: 85554434--85554576 Score: 171
Period size: 50 Copynumber: 2.8 Consensus size: 51
85554424 TGCTATCTTT
* * * * * * *
85554434 TACACATAGTGGTCAGCACTTAGTACCACACATGTGATCAAATCTATCGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCCATCGGG
* * *
85554485 TACGCATAGTAGCCTGCACTTAGTACTACACATGAGACCTAA-CCATCTGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCCATCGGG
* *
85554535 TACACATAGTAGCCTGCACTTAGTACTGCACACGTGACCTAA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
85554577 AACATTTTAA
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 44 0.56
51 34 0.44
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (51 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCCATCGGG
Found at i:85561720 original size:27 final size:27
Alignment explanation
Indices: 85561689--85561745 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
85561679 GTACCTAGAC
85561689 CCCCTA-ATTGATAAAATGACTGAAATG
1 CCCCTATA-TGATAAAATGACTGAAATG
* * *
85561716 CCCCTGTATGGTAAAATGACTGATATG
1 CCCCTATATGATAAAATGACTGAAATG
85561743 CCC
1 CCC
85561746 TATGAGATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (27 bp):
CCCCTATATGATAAAATGACTGAAATG
Found at i:85563992 original size:40 final size:40
Alignment explanation
Indices: 85563913--85564076 Score: 222
Period size: 40 Copynumber: 4.1 Consensus size: 40
85563903 CGGATGATAA
* * * * *
85563913 CCGGACTAAGATCTGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
85563953 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
85563993 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
85564033 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
85564073 CCGG
1 CCGG
85564077 CAAAATCCCG
Statistics
Matches: 107, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 2 0.02
40 103 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:85564357 original size:22 final size:22
Alignment explanation
Indices: 85564317--85564358 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
85564307 GAATGTGCAT
*
85564317 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
85564339 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
85564359 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:85566402 original size:48 final size:47
Alignment explanation
Indices: 85566293--85566581 Score: 292
Period size: 48 Copynumber: 5.8 Consensus size: 47
85566283 TGAGATCCTG
* * * *
85566293 TGTAAGACCATGACTAGGACATGGCATCGGCATTCGAGATGAGAGCCAA
1 TGTAAGACCATGTCT-GGACATGGCATCGGCATT-GATATGTGTGCCAA
*
85566342 TGTAAGACCATGTCTGCGACATGGCATCGGCGTTGATATGTGTGCCAA
1 TGTAAGACCATGTCTG-GACATGGCATCGGCATTGATATGTGTGCCAA
* * *
85566390 TGTAAGACCATGTCTAGGACATGACATTGACATTGATATGTGTGCCAA
1 TGTAAGACCATGTCT-GGACATGGCATCGGCATTGATATGTGTGCCAA
** *
85566438 TGTAAGACCATGTGACCATGTCTAGGACATGGCATCGGGGTTGATATGTGTGCCAG
1 TGT---A--A---GACCATGTCT-GGACATGGCATCGGCATTGATATGTGTGCCAA
* * *
85566494 TGTAAGACCATGTCTGGGACATGGCATCGGGGA-TGATATGTGTGCTAG
1 TGTAAGACCATGTCT-GGACATGGCATC-GGCATTGATATGTGTGCCAA
*
85566542 TGTAAGACCATGTCTGGGACATGGCATCGGCACTGATATG
1 TGTAAGACCATGTCT-GGACATGGCATCGGCATTGATATG
85566582 AGACTTCGTG
Statistics
Matches: 209, Mismatches: 19, Indels: 25
0.83 0.08 0.10
Matches are distributed among these distances:
47 3 0.01
48 128 0.61
49 34 0.16
51 2 0.01
53 2 0.01
56 40 0.19
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGACATGGCATCGGCATTGATATGTGTGCCAA
Found at i:85566462 original size:56 final size:56
Alignment explanation
Indices: 85566395--85566506 Score: 170
Period size: 56 Copynumber: 2.0 Consensus size: 56
85566385 GCCAATGTAA
*
85566395 GACCATGTCTAGGACATGACATTGACATTGATATGTGTGCCAATGTAAGACCATGT
1 GACCATGTCTAGGACATGACATCGACATTGATATGTGTGCCAATGTAAGACCATGT
* *** *
85566451 GACCATGTCTAGGACATGGCATCGGGGTTGATATGTGTGCCAGTGTAAGACCATGT
1 GACCATGTCTAGGACATGACATCGACATTGATATGTGTGCCAATGTAAGACCATGT
85566507 CTGGGACATG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (56 bp):
GACCATGTCTAGGACATGACATCGACATTGATATGTGTGCCAATGTAAGACCATGT
Found at i:85566474 original size:104 final size:104
Alignment explanation
Indices: 85566347--85566554 Score: 303
Period size: 104 Copynumber: 2.0 Consensus size: 104
85566337 GCCAATGTAA
85566347 GACCATGTCTGCGACATGGCATCGGCGTTGATATGTGTGCCAATGTAAGACCATGTCTAGGACAT
1 GACCATGTCTGCGACATGGCATCGGCGTTGATATGTGTGCCAATGTAAGACCATGTCTAGGACAT
*
85566412 GACAT-TGACATTGATATGTGTGCCAATGTAAGACCATGT
66 GACATCGGACA-TGATATGTGTGCCAATGTAAGACCATGT
* * *
85566451 GACCATGTCTAG-GACATGGCATCGGGGTTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACA
1 GACCATGTCT-GCGACATGGCATCGGCGTTGATATGTGTGCCAATGTAAGACCATGTCTAGGACA
* ** * *
85566515 TGGCATCGGGGATGATATGTGTGCTAGTGTAAGACCATGT
65 TGACATCGGACATGATATGTGTGCCAATGTAAGACCATGT
85566555 CTGGGACATG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
104 90 0.97
105 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (104 bp):
GACCATGTCTGCGACATGGCATCGGCGTTGATATGTGTGCCAATGTAAGACCATGTCTAGGACAT
GACATCGGACATGATATGTGTGCCAATGTAAGACCATGT
Found at i:85566579 original size:152 final size:153
Alignment explanation
Indices: 85566298--85566581 Score: 408
Period size: 152 Copynumber: 1.9 Consensus size: 153
85566288 TCCTGTGTAA
85566298 GACCATGACTAGGACATGGCATCGGCATTCGAGATGAGAGCCAATGTAAGACCATGTCTGCGACA
1 GACCATGACTAGGACATGGCATCGGCATTCGAGATGAGAGCCAATGTAAGACCATGTCTGCGACA
* * *
85566363 TGGCATCGGCGTTGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGACATTGACATTGATA
66 TGGCATCGGCGATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGACATCGACACTGATA
85566428 TGTGTGCCAATGTAAGACCATGT
131 TGTGTGCCAATGTAAGACCATGT
* ** * * * * *
85566451 GACCATGTCTAGGACATGGCATCGGGGTT-GATATGTGTGCCAGTGTAAGACCATGTCTGGGACA
1 GACCATGACTAGGACATGGCATCGGCATTCGAGATGAGAGCCAATGTAAGACCATGTCTGCGACA
* * * * * *
85566515 TGGCATCGGGGATGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATA
66 TGGCATCGGCGATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGACATCGACACTGATA
85566580 TG
131 TG
85566582 AGACTTCGTG
Statistics
Matches: 114, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
152 88 0.77
153 26 0.23
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (153 bp):
GACCATGACTAGGACATGGCATCGGCATTCGAGATGAGAGCCAATGTAAGACCATGTCTGCGACA
TGGCATCGGCGATGATATGTGTGCCAATGTAAGACCATGTCTAGGACATGACATCGACACTGATA
TGTGTGCCAATGTAAGACCATGT
Found at i:85566593 original size:48 final size:48
Alignment explanation
Indices: 85566451--85566597 Score: 172
Period size: 48 Copynumber: 3.1 Consensus size: 48
85566441 AAGACCATGT
* ** * * *
85566451 GACCATGTCTAGGACATGGCATCGGGGTTGATATGTGTGCCAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGGCATGATATGAGTACTAGTGTAA
* * *
85566499 GACCATGTCTGGGACATGGCATCGGGGATGATATGTGTGCTAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGGCATGATATGAGTACTAGTGTAA
*
85566547 GACCATGTCTGGGACATGGCATC-GGCACTGATATGAG-ACTTCGTGTAA
1 GACCATGTCTGGGACATGGCATCGGGCA-TGATATGAGTAC-TAGTGTAA
85566595 GAC
1 GAC
85566598 GATATCTAGG
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 4 0.04
48 86 0.96
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.26
Consensus pattern (48 bp):
GACCATGTCTGGGACATGGCATCGGGCATGATATGAGTACTAGTGTAA
Found at i:85568198 original size:21 final size:21
Alignment explanation
Indices: 85568174--85568215 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
85568164 GACATGACTA
*
85568174 TGAATGCTAGATGACTAAGTT
1 TGAATGCTAAATGACTAAGTT
85568195 TGAATGCTAAATGACTAAGTT
1 TGAATGCTAAATGACTAAGTT
85568216 GAGAATATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (21 bp):
TGAATGCTAAATGACTAAGTT
Found at i:85583554 original size:30 final size:30
Alignment explanation
Indices: 85583510--85583598 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
85583500 CAAAGATAAC
*
85583510 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
85583539 GAGAAACCCGGAATAAAGAAATCCATA-ATA
1 AAGAAACCCGGAATAAAGAAATCCA-AGATA
* * *
85583569 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
85583599 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 8 0.16
30 36 0.72
31 6 0.12
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:85583598 original size:15 final size:15
Alignment explanation
Indices: 85583521--85583598 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
85583511 AGAAAACCGA
85583521 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
85583536 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
85583550 AATAAAGAAATCCATA-
1 -ATAAAGAAATCCA-AG
* *
85583566 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAAG
*
85583581 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
85583596 ATA
1 ATA
85583599 CGATACTATG
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
14 3 0.06
15 43 0.90
16 2 0.04
ACGTcount: A:0.55, C:0.15, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:85590915 original size:43 final size:44
Alignment explanation
Indices: 85590804--85590915 Score: 142
Period size: 43 Copynumber: 2.6 Consensus size: 44
85590794 CAATGCAACG
* *
85590804 TCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCCACTA
*
85590847 TCCCAGACAGGGTCTTACATG-AAATCAAATAT-GATGCCGA-TA
1 TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCC-ACTA
* *
85590889 TCCCAGGCATGGTCTTACACGTAAATC
1 TCCCAGACATGGTCTTACATGTAAATC
85590916 TCGAATCGAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
42 25 0.42
43 35 0.58
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCCACTA
Found at i:85592124 original size:13 final size:13
Alignment explanation
Indices: 85592106--85592130 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85592096 CCATTTCGAA
85592106 GGGTACACGGGCT
1 GGGTACACGGGCT
85592119 GGGTACACGGGC
1 GGGTACACGGGC
85592131 GTATGGTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.48, T:0.12
Consensus pattern (13 bp):
GGGTACACGGGCT
Found at i:85594520 original size:29 final size:28
Alignment explanation
Indices: 85594453--85594539 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 28
85594443 AAGTCCACAT
85594453 ACATTC-TCATGGCCCACTAGGCCCAATC
1 ACATTCAT-ATGGCCCACTAGGCCCAATC
* * *
85594481 TCATTCATATGGCCCATTACGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCC-AATC
*
85594510 ACA-TCTATATGACCCACTAGGCCCAATC
1 ACATTC-ATATGGCCCACTAGGCCCAATC
85594538 AC
1 AC
85594540 TTTTATAGTC
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
28 27 0.55
29 22 0.45
ACGTcount: A:0.29, C:0.37, G:0.11, T:0.23
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCCAATC
Found at i:85594546 original size:28 final size:28
Alignment explanation
Indices: 85594465--85594546 Score: 92
Period size: 29 Copynumber: 2.9 Consensus size: 28
85594455 ATTCTCATGG
* * *
85594465 CCCACTAGGCCCAATCTCATTCATATGG
1 CCCACTAGGCCCAATCACATTTATATGA
* * *
85594493 CCCATTACGCCCAAATCACATCTATATGA
1 CCCACTAGGCCC-AATCACATTTATATGA
*
85594522 CCCACTAGGCCCAATCACTTTTATA
1 CCCACTAGGCCCAATCACATTTATA
85594547 GTCATGCTCA
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
28 21 0.49
29 22 0.51
ACGTcount: A:0.29, C:0.35, G:0.10, T:0.26
Consensus pattern (28 bp):
CCCACTAGGCCCAATCACATTTATATGA
Found at i:85594799 original size:16 final size:16
Alignment explanation
Indices: 85594764--85594802 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
85594754 AAACTTTCAT
*
85594764 CTTTTCGACATTTTAC
1 CTTTTCGACATTTGAC
85594780 CTTTTCGACATTTCGA-
1 CTTTTCGACATTT-GAC
85594796 CTTTTCG
1 CTTTTCG
85594803 GGATTTGCCG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.95
17 1 0.05
ACGTcount: A:0.15, C:0.26, G:0.10, T:0.49
Consensus pattern (16 bp):
CTTTTCGACATTTGAC
Found at i:85596672 original size:28 final size:29
Alignment explanation
Indices: 85596603--85596677 Score: 109
Period size: 28 Copynumber: 2.6 Consensus size: 29
85596593 TAAAAGTGAG
*
85596603 TGGGCCTAGTGGGCCATATAGATGTGATT
1 TGGGCCTAGTGGGCCATATAGATGTGAAT
*
85596632 TGGGCCTAATGGGCCATAT-GAT-TGAGAT
1 TGGGCCTAGTGGGCCATATAGATGTGA-AT
85596660 TGGGCCTAGTGGGCCATA
1 TGGGCCTAGTGGGCCATA
85596678 AGCGTGTATG
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 3 0.07
28 21 0.50
29 18 0.43
ACGTcount: A:0.21, C:0.16, G:0.35, T:0.28
Consensus pattern (29 bp):
TGGGCCTAGTGGGCCATATAGATGTGAAT
Found at i:85600412 original size:40 final size:40
Alignment explanation
Indices: 85600348--85600519 Score: 294
Period size: 40 Copynumber: 4.3 Consensus size: 40
85600338 CCTTTGGAAT
* *
85600348 TTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGAC
85600387 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
*
85600427 TTAGCCCGGATATAGTCACTAGCACAAATGTCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
85600467 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
85600507 TTAGCCCGGATAT
1 TTAGCCCGGATAT
85600520 CATTCGAATA
Statistics
Matches: 127, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 4 0.03
40 122 0.96
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
Found at i:85608469 original size:40 final size:40
Alignment explanation
Indices: 85608401--85608611 Score: 338
Period size: 40 Copynumber: 5.3 Consensus size: 40
85608391 CCTTCAGAAT
* *
85608401 TTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGAC
*
85608440 TTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
* *
85608480 TTAGCCCGGATATAGTCACTAGCACAAATG-TTTTGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
*
85608519 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
85608559 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
85608599 TTAGCCCGGATAT
1 TTAGCCCGGATAT
85608612 CATTCGAATA
Statistics
Matches: 161, Mismatches: 8, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
39 41 0.25
40 119 0.74
41 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
Found at i:85608525 original size:79 final size:80
Alignment explanation
Indices: 85608401--85608611 Score: 338
Period size: 79 Copynumber: 2.7 Consensus size: 80
85608391 CCTTCAGAAT
* *
85608401 TTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
*
85608464 TAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGAC
* *
85608480 TTAGCCCGGATATAGTCACTAGCACAAATG-TTTTGGGACTTAGCCCGGATATAGTCACTAGCAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC
*
85608544 AAATGCCTTTGGGAC
66 AAATGCCTTCGGGAC
85608559 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
85608612 CATTCGAATA
Statistics
Matches: 121, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
79 78 0.64
80 42 0.35
81 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC
AAATGCCTTCGGGAC
Done.