Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 268 of 325
Found at i:85615984 original size:57 final size:57
Alignment explanation
Indices: 85615854--85615984 Score: 126
Period size: 57 Copynumber: 2.3 Consensus size: 57
85615844 ATTAACCTTG
* * *
85615854 TTATAGAAAGGATTTAGCCTGGATGGGTAATCCTGAATAATACCTCTTGAGCATACA
1 TTATATAAAGGATTTAGCCTAGATGGGTAATCCTGAATAATACCCCTTGAGCATACA
* * * * *
85615911 TAATGAT-TAGGGTTTAGGCTAGACT-GGTAATCCT-AATTAA-GCCCCTATGAGCATACA
1 TTAT-ATAAAGGATTTAGCCTAGA-TGGGTAATCCTGAA-TAATACCCCT-TGAGCATACA
85615968 TTATATAAAGGATTTAG
1 TTATATAAAGGATTTAG
85615985 TTTGGATTGT
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
56 8 0.14
57 48 0.83
58 2 0.03
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.31
Consensus pattern (57 bp):
TTATATAAAGGATTTAGCCTAGATGGGTAATCCTGAATAATACCCCTTGAGCATACA
Found at i:85622091 original size:43 final size:43
Alignment explanation
Indices: 85622043--85622209 Score: 155
Period size: 43 Copynumber: 3.9 Consensus size: 43
85622033 GTTATCGAGA
*
85622043 TGTGATTACATGTAAGACTATGTCTGGGACATTGGCATTGCAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGCAT
* *
85622086 TGTGATTACATGTAATACCATTTCTGGGACATTGGCATTGTC-T
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-CAT
* * * * * * **
85622129 TATGATTTCGTGTAAAACCCTCTCTTAGACA-TGGCATTG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGCAT
* *
85622170 ATGTGA-TAGCATGTAAGACCATATCTGGGATA-TGGCATTG
1 -TGTGATTA-CATGTAAGACCATGTCTGGGACATTGGCATTG
85622210 TACGAGCTTT
Statistics
Matches: 100, Mismatches: 20, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
41 2 0.02
42 36 0.36
43 61 0.61
44 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGCAT
Found at i:85632725 original size:43 final size:43
Alignment explanation
Indices: 85632691--85632867 Score: 300
Period size: 43 Copynumber: 4.1 Consensus size: 43
85632681 CGGTATTACA
85632691 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAAG
* * *
85632734 CCTACTAGGCATGAAGGCCCGAATATACATCACCGGCATGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAAG
*
85632777 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAAG
* *
85632820 CCTGCTAGGCACGAAGGCCCGAATATACATCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAAG
85632863 CCTGC
1 CCTGC
85632868 GGGATTTAAC
Statistics
Matches: 126, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 126 1.00
ACGTcount: A:0.30, C:0.33, G:0.25, T:0.12
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAAG
Found at i:85640826 original size:56 final size:56
Alignment explanation
Indices: 85640750--85640865 Score: 223
Period size: 56 Copynumber: 2.1 Consensus size: 56
85640740 TACATTAGCT
*
85640750 TCCCGATGTGGGATCCCTCCATCATCAGAGTTTAAAACCAACACCAACTCTTGCCG
1 TCCCGATGTGGGATCCCTCCATCACCAGAGTTTAAAACCAACACCAACTCTTGCCG
85640806 TCCCGATGTGGGATCCCTCCATCACCAGAGTTTAAAACCAACACCAACTCTTGCCG
1 TCCCGATGTGGGATCCCTCCATCACCAGAGTTTAAAACCAACACCAACTCTTGCCG
85640862 TCCC
1 TCCC
85640866 AACATAGCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (56 bp):
TCCCGATGTGGGATCCCTCCATCACCAGAGTTTAAAACCAACACCAACTCTTGCCG
Found at i:85651780 original size:30 final size:30
Alignment explanation
Indices: 85651746--85651806 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
85651736 TCATTAACTC
*
85651746 AAACTTTGGTAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
85651776 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
85651806 A
1 A
85651807 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:85656663 original size:30 final size:30
Alignment explanation
Indices: 85656605--85656665 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
85656595 TTCCCGAGCC
*
85656605 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
* * * *
85656635 TAGGGGCAAAATTGTAATTTTACCAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
85656665 T
1 T
85656666 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATACAAAAGTT
Found at i:85659675 original size:27 final size:26
Alignment explanation
Indices: 85659644--85659820 Score: 176
Period size: 27 Copynumber: 6.6 Consensus size: 26
85659634 TAAATTGTAC
*
85659644 AGCACTAAGTGTGCGATTCAACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
85659671 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
85659697 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
85659725 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
85659752 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
85659779 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
85659806 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85659821 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 124 0.98
28 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:85659705 original size:54 final size:54
Alignment explanation
Indices: 85659644--85659820 Score: 198
Period size: 54 Copynumber: 3.3 Consensus size: 54
85659634 TAAATTGTAC
* * **
85659644 AGCACTAAGTGTGCGATTCAACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* ** *
85659699 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * *
85659752 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
85659806 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85659821 GGCTCAATAT
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
53 2 0.02
54 99 0.95
55 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:85659784 original size:81 final size:81
Alignment explanation
Indices: 85659645--85659799 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
85659635 AAATTGTACA
* *
85659645 GCACTAAGTGTGCGATTCAACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
85659710 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
85659726 GCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
85659789 GTGCGAGTTGA
64 GTGCGAATTGA
85659800 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 1 0.02
81 62 0.95
82 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85659811 original size:81 final size:81
Alignment explanation
Indices: 85659641--85659820 Score: 211
Period size: 81 Copynumber: 2.2 Consensus size: 81
85659631 GATTAAATTG
* *
85659641 TACAGCACTAAGTGTGCGATTCAACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
85659706 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
85659722 TGCGGCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
85659785 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
85659803 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85659821 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.01
81 79 0.96
82 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85661520 original size:46 final size:45
Alignment explanation
Indices: 85661467--85661627 Score: 155
Period size: 46 Copynumber: 3.5 Consensus size: 45
85661457 TGGTTGAGCA
85661467 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA-G
* *** * *
85661513 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-T-GCGAAG
* *
85661560 TCCGAGCTCGTTGAATTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA-G
* * *
85661606 CCCGAGCTTGTTGAGTTGAGTC
1 TCCGAACTCGTTGAGTTGAGTC
85661628 CGGGCGGGTT
Statistics
Matches: 91, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 51 0.56
47 30 0.33
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAG
Found at i:85666792 original size:49 final size:49
Alignment explanation
Indices: 85666727--85666971 Score: 274
Period size: 49 Copynumber: 4.9 Consensus size: 49
85666717 CTATTGTGAG
* *
85666727 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
* * * * * *
85666776 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTC
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTTA
* * *
85666826 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 G-TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
** * * * * *
85666876 GGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATTG
1 -GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
* * *
85666926 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
85666972 CTTCGGCTAC
Statistics
Matches: 161, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 76 0.47
50 47 0.29
51 38 0.24
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTA
Found at i:85666969 original size:99 final size:100
Alignment explanation
Indices: 85666728--85666969 Score: 317
Period size: 100 Copynumber: 2.4 Consensus size: 100
85666718 TATTGTGAGG
* * *
85666728 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGTCACATGTGTAGTACT
* *
85666793 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCGGATAACTTCGA
* * **
85666828 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTA-GTCACATGTGTAGTAC
* * * *
85666893 TAAGTGTAGGCTACTACGTGTATCGGATAA-TT-GG
65 TAAGTGCAGGCTACTACGCGTACCGGATAACTTCGA
* * *
85666927 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
85666970 AGCTTCGGCT
Statistics
Matches: 125, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
99 39 0.31
100 48 0.38
101 38 0.30
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAACTTCGA
Found at i:85672574 original size:50 final size:50
Alignment explanation
Indices: 85672441--85672624 Score: 246
Period size: 50 Copynumber: 3.7 Consensus size: 50
85672431 AGCTATTGTG
* * *
85672441 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTA-ATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATAA-TT
* * **
85672492 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
*
85672542 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* *
85672592 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
85672625 TGCGTACCAG
Statistics
Matches: 117, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 30 0.26
50 48 0.41
51 39 0.33
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
Found at i:85676619 original size:15 final size:15
Alignment explanation
Indices: 85676598--85676635 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
85676588 TGTAGGTTCT
*
85676598 ATAGACATGTTCATG
1 ATAGACACGTTCATG
*
85676613 CTAGACACGTTCATG
1 ATAGACACGTTCATG
85676628 ATAGACAC
1 ATAGACAC
85676636 CAATTTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (15 bp):
ATAGACACGTTCATG
Found at i:85682333 original size:19 final size:19
Alignment explanation
Indices: 85682309--85682351 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
85682299 ACATCCGCAC
85682309 ACTTAGTACCTTAAAGATT
1 ACTTAGTACCTTAAAGATT
*
85682328 ACTTAGTACTTTAAAGATT
1 ACTTAGTACCTTAAAGATT
85682347 ACTTA
1 ACTTA
85682352 AAGCTATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (19 bp):
ACTTAGTACCTTAAAGATT
Found at i:85692774 original size:50 final size:51
Alignment explanation
Indices: 85692713--85692808 Score: 140
Period size: 50 Copynumber: 1.9 Consensus size: 51
85692703 AGAGCTACAA
* * * *
85692713 TTATCTGATCAAGGACAAGTGA-AAGTGATAAGTGATTACTTCGGCAACAT
1 TTATCTAATCAAGGACAAATGACAAGTGAAAAGTGATAACTTCGGCAACAT
*
85692763 TTATCTAATCAAGGACAAATGACAAGTGAAAAGTGGTAACTTCGGC
1 TTATCTAATCAAGGACAAATGACAAGTGAAAAGTGATAACTTCGGC
85692809 TACCTGATCA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
50 20 0.50
51 20 0.50
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.26
Consensus pattern (51 bp):
TTATCTAATCAAGGACAAATGACAAGTGAAAAGTGATAACTTCGGCAACAT
Found at i:85692825 original size:31 final size:31
Alignment explanation
Indices: 85692787--85692904 Score: 164
Period size: 31 Copynumber: 3.8 Consensus size: 31
85692777 ACAAATGACA
*
85692787 AGTGAAAAGTGGTAACTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
85692818 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * * *
85692849 AGTAAAAAATGGTAGCTCCAGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
85692880 AATGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
85692905 AAGTGACAAG
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:85693079 original size:48 final size:48
Alignment explanation
Indices: 85692926--85693192 Score: 268
Period size: 48 Copynumber: 5.7 Consensus size: 48
85692916 GATTTCCATA
* * * * * * *
85692926 TAAGACCATATCTGGGATATGGGATCG--GTGTGATATATGCTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATAC-GTG
* * * * * *
85692973 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATACGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATACGTG
*
85693019 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATACGTG
*
85693067 TAAGACCTTAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA-TACGTG
*
85693116 TAAGACCATAGCTGGGCTATGGCATCTATATGTGA-A--T-AT--GTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATACGTG
* *
85693158 CAAGACCATAACTGGGCTATGGCATC-ATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
85693193 AGATGTGTAA
Statistics
Matches: 196, Mismatches: 19, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.01
42 34 0.17
44 1 0.01
45 1 0.01
46 27 0.14
47 37 0.19
48 57 0.29
49 38 0.19
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATACGTG
Found at i:85693132 original size:97 final size:95
Alignment explanation
Indices: 85692973--85693157 Score: 273
Period size: 97 Copynumber: 1.9 Consensus size: 95
85692963 TGCTACTGTA
* *
85692973 TAAGACCATATCTGGGATATGGCATCAGTGAGATACGTGATTCGTGTAAGACCATAGCTGGGCTA
1 TAAGACCATAGCTGGGATATGGCATCAATGAGATACGTGATTCGTGTAAGACCATAGCTGGGCTA
85693038 TGGCATCGATATGTG-ATATGTGATCCGTG
66 TGGCATCGATATGTGAATATGTGATCCGTG
* * * *
85693067 TAAGACCTTAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTGTAAGACCATAGCTGGG
1 TAAGACCATAGCTGGGATATGGCATC-A-ATGAGATACGTGATT-CGTGTAAGACCATAGCTGGG
*
85693132 CTATGGCATCTATATGTGAATATGTG
63 CTATGGCATCGATATGTGAATATGTG
85693158 CAAGACCATA
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
94 23 0.29
95 1 0.01
96 12 0.15
97 37 0.46
98 7 0.09
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (95 bp):
TAAGACCATAGCTGGGATATGGCATCAATGAGATACGTGATTCGTGTAAGACCATAGCTGGGCTA
TGGCATCGATATGTGAATATGTGATCCGTG
Found at i:85693163 original size:42 final size:41
Alignment explanation
Indices: 85693101--85693224 Score: 158
Period size: 42 Copynumber: 3.0 Consensus size: 41
85693091 TCGATATGTG
* *
85693101 ATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATC
1 ATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
* *
85693142 TATATGTGAATATGTGCAAGACCATAACTGGGCTATGGCATC
1 -ATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
* * **
85693184 ATTATGTGAAGATGTGTAAGACCATAGTTGAACTATGGCAT
1 A-TATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCAT
85693225 TGAGAAAACG
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 1 0.01
42 70 0.99
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (41 bp):
ATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:85696243 original size:39 final size:39
Alignment explanation
Indices: 85696183--85696400 Score: 301
Period size: 39 Copynumber: 5.6 Consensus size: 39
85696173 ATCGTGATCT
* ** *
85696183 GAAGCCCGAAGTCTAGTTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
85696222 GAAGCCTGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
** * *
85696261 GAAGCCTAAAGGCTAACTTAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
85696300 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* * *
85696339 AAAGCCCGAAGGCTAACTGAAGCACACAAATGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
**
85696378 GAAGCGGGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
85696401 TCATCAGAGC
Statistics
Matches: 159, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 159 1.00
ACGTcount: A:0.39, C:0.22, G:0.25, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:85699005 original size:15 final size:15
Alignment explanation
Indices: 85698982--85699023 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
85698972 GAAGCCCAGA
85698982 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
85698997 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
85699012 ATAAGGAAATCC
1 ATAAGGAAATCC
85699024 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:85701855 original size:39 final size:39
Alignment explanation
Indices: 85701798--85702005 Score: 276
Period size: 39 Copynumber: 5.3 Consensus size: 39
85701788 CGGGACTTTA
* * * *
85701798 AGCCCGGATATAATACCAGCAC-AAAGCCTGCGGGGCTCT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCAGGACT-T
* *
85701837 AGCCCGGATATAACACCAGCACGAATGCCTTCAGGGCTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCAGGACTT
* * **
85701876 AACCCAGATATAACACCAGCACGACTGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCAGGACTT
* *
85701915 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCAGGACTT
85701954 AGCCCGGATATAACACCAGCAC-AAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAAA-GCCTTCAGGACTT
85701993 AGCCCGGATATAA
1 AGCCCGGATATAA
85702006 TTCTCCATTA
Statistics
Matches: 153, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
38 2 0.01
39 139 0.91
40 12 0.08
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.17
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAAAGCCTTCAGGACTT
Found at i:85701933 original size:78 final size:78
Alignment explanation
Indices: 85701788--85702005 Score: 305
Period size: 78 Copynumber: 2.8 Consensus size: 78
85701778 ACAAAGCATG
* * * * *
85701788 CGGGACTTTAAGCCCGGATATAATACCAGCACAAA-GCCTGCGGGGCTCTAGCCCGGATATAACA
1 CGGGAC-TTAA-CCCAGATATAACACCAGCACAAATGCCTTCAGGACT-TAGCCCGGATATAACA
85701852 CCAGCACGAATGCCTT
63 CCAGCACGAATGCCTT
* *
85701868 CAGGG-CTTAACCCAGATATAACACCAGCACGACTGCCTTCAGGACTTAGCCCGGATATAACACC
1 C-GGGACTTAACCCAGATATAACACCAGCACAAATGCCTTCAGGACTTAGCCCGGATATAACACC
85701932 AGCACGAATGCCTT
65 AGCACGAATGCCTT
* *
85701946 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCAGGACTTAGCCCGGATATAA
1 CGGGACTTAACCCAGATATAACACCAGCACAAATGCCTTCAGGACTTAGCCCGGATATAA
85702006 TTCTCCATTA
Statistics
Matches: 124, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
77 3 0.02
78 103 0.83
79 13 0.10
80 2 0.02
81 3 0.02
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (78 bp):
CGGGACTTAACCCAGATATAACACCAGCACAAATGCCTTCAGGACTTAGCCCGGATATAACACCA
GCACGAATGCCTT
Found at i:85702531 original size:110 final size:110
Alignment explanation
Indices: 85702338--85702553 Score: 405
Period size: 110 Copynumber: 2.0 Consensus size: 110
85702328 TGTGGATAGG
* *
85702338 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCACCTTTCCCCTACCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
85702403 TAAACAAATGAATTTGTTTAATTACTTACTCAACCTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACCTTAATTCTAT
85702448 CTACTCGATTGCTTTCACCTTTCCCCTACCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCACCTTTCCCCTACCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
*
85702513 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACCTTAATT
85702554 ATAATAGTCA
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 103 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.45
Consensus pattern (110 bp):
CTACTCGATTGCTTTCACCTTTCCCCTACCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
TAAACAAATGAATTTGTTTAATTACTTACTCAACCTTAATTCTAT
Found at i:85704766 original size:54 final size:54
Alignment explanation
Indices: 85704495--85704764 Score: 369
Period size: 54 Copynumber: 5.0 Consensus size: 54
85704485 TTAGAATACT
* * * * **
85704495 TTAGTTTATCAAATTACCAAAATATCCCTGGTTTGTATAATCAATAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
*
85704549 TTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * * * *
85704603 TTAGTTTACAAAATTACCGAACTACCCTTGGTTTGTAAAATTACTAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* **
85704657 TTTGTTTATAAAATTACCAAAATACCATTGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * * *
85704711 CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTGAAATTACCAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
85704765 CTGATTTGTG
Statistics
Matches: 190, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 190 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (54 bp):
TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
Found at i:85704773 original size:81 final size:81
Alignment explanation
Indices: 85704496--85704792 Score: 326
Period size: 81 Copynumber: 3.7 Consensus size: 81
85704486 TAGAATACTT
* * * * * ** *
85704496 TAGTTTATCAAATTACCAAAATATCCCTGGTTTGTATAATCAATAAAATACCCTTGGTTTATAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAA
85704561 ATTACCAAAATACCCC
66 ATTACCAAAATACCCC
* * * ** * *
85704577 TGGTTTGTAAAATTACCAAAATA-CCCTTAGTTTACAAAATTACCGAACTACCCTTGGTTTGTAA
1 TAGTTTATAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTGGTTTGTAA
* *
85704641 AATTACTAAAATACCCT
65 AATTACCAAAATACCCC
* ** * * *
85704658 TTGTTTATAAAATTACCAAAATACCATTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAA
85704723 ATTACCAAAATACCCC
66 ATTACCAAAATACCCC
* * * **
85704739 TAGTTTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTATTAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCT
85704793 CGACCTATAA
Statistics
Matches: 174, Mismatches: 40, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
80 4 0.02
81 168 0.97
82 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (81 bp):
TAGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAA
ATTACCAAAATACCCC
Found at i:85704804 original size:81 final size:81
Alignment explanation
Indices: 85704496--85704929 Score: 320
Period size: 81 Copynumber: 5.4 Consensus size: 81
85704486 TAGAATACTT
* * * * * * ** * *
85704496 TAGTTTATCAAATTACCAAAATATCCCTGGTTTGTATAATCAATAAAATACCCTTGGTTTATAAA
1 TAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGATTTATAAA
85704561 ATTACCAAAATACCCC
66 ATTACCAAAATACCCC
* * ** * * * * *
85704577 TGGTTTGTAAAATTACCAAAATA-CCCTTAGTTTACAAAATTACCGAACTACCCTTGGTTTGTAA
1 TAGTTTGTAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTCGATTTATAA
* *
85704641 AATTACTAAAATACCCT
65 AATTACCAAAATACCCC
* * ** * * *
85704658 TTGTTTATAAAATTACCAAAATACCATTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 TAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGA-TTTATAA
85704722 AATTACCAAAATACCCC
65 AATTACCAAAATACCCC
* * ** **
85704739 TAGTTTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTATTAAAATACCCTCGACCTATAAA
1 TAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGATTTATAAA
***
85704804 ATTATTGAAATA-CCC
66 ATTACCAAAATACCCC
* * * * ** * * *** *
85704819 TCGACTTGTAAAATTACCAAAGTACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTACAA
1 TAG-TTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGATTTATAA
85704884 AATTACCAAAATA-CCC
65 AATTACCAAAATACCCC
* **
85704900 TTGTAGGGTAGAAA-TACCAAAATACCCCTG
1 TAGT-TTGTA-AAATTACCAAAATACCCCTG
85704930 TAGAGTAGAA
Statistics
Matches: 274, Mismatches: 72, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
80 9 0.03
81 258 0.94
82 7 0.03
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (81 bp):
TAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGATTTATAAA
ATTACCAAAATACCCC
Found at i:85704844 original size:27 final size:27
Alignment explanation
Indices: 85704505--85704900 Score: 266
Period size: 27 Copynumber: 14.7 Consensus size: 27
85704495 TTAGTTTATC
*
85704505 AAATTACCAAAATATCCCT-GGTTTGTA
1 AAATTACCAAAATA-CCCTCGATTTGTA
* * ** * * *
85704532 TAATCAATAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
85704559 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* **
85704586 AAATTACCAAAATACCCT-TAGTTTACA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * * *
85704613 AAATTACCGAACTACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
85704640 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
* * *
85704667 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
85704694 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
85704721 AAATTACCAAAATACCC-CTAGTTTGTG
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
85704748 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** ** *
85704775 AAATTATTAAAATACCCTCGACCTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
85704802 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
85704829 AAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *** **
85704856 GAATTATCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
85704883 AAATTACCAAAATACCCT
1 AAATTACCAAAATACCCT
85704901 TGTAGGGTAG
Statistics
Matches: 297, Mismatches: 62, Indels: 20
0.78 0.16 0.05
Matches are distributed among these distances:
26 7 0.02
27 285 0.96
28 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:85704917 original size:27 final size:27
Alignment explanation
Indices: 85704884--85705081 Score: 234
Period size: 27 Copynumber: 7.3 Consensus size: 27
85704874 CGATTTACAA
* *
85704884 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
85704911 AAATACCAAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
85704938 AATTATCGAAATACCCCTCTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
85704965 AATTATCGCAATACCCCTGTAGGGAAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
85704992 AATTACCGAAATACCCCTATAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
85705019 AATTACCGAAATACTCCTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
85705046 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
85705073 AATTACCGA
1 AATTACCGA
85705082 GATATCTTGT
Statistics
Matches: 142, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:85705814 original size:27 final size:26
Alignment explanation
Indices: 85705769--85705827 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 26
85705759 TTTGCCATAT
*
85705769 TATCTGTTCTGGTGGCTCTG-CTACAA
1 TATCTGTTCTGGTGACTCTGTC-ACAA
85705795 TATCTGTATCTGGTGACTCTGTCACAA
1 TATCTGT-TCTGGTGACTCTGTCACAA
85705822 TATCTG
1 TATCTG
85705828 ATAACTTAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 7 0.23
27 22 0.73
28 1 0.03
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (26 bp):
TATCTGTTCTGGTGACTCTGTCACAA
Found at i:85706002 original size:6 final size:6
Alignment explanation
Indices: 85705964--85706024 Score: 70
Period size: 6 Copynumber: 9.8 Consensus size: 6
85705954 TTGCATTCAC
* *
85705964 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
85706014 ATTCTG ATTCT
1 ATTCTG ATTCT
85706025 AGTTCTTATA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
5 2 0.04
6 36 0.77
7 8 0.17
8 1 0.02
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:85711913 original size:37 final size:37
Alignment explanation
Indices: 85711802--85711915 Score: 176
Period size: 37 Copynumber: 3.1 Consensus size: 37
85711792 CGAATAGTCC
* * *
85711802 CCACATGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
85711839 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
85711876 CCACACGTAGTCATCGGGTCTTACGCGGA-ATATATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATA-ATCT
85711913 CCA
1 CCA
85711916 AGTTTCATGT
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 3 0.04
37 69 0.96
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:85712108 original size:48 final size:48
Alignment explanation
Indices: 85712045--85712574 Score: 835
Period size: 48 Copynumber: 11.0 Consensus size: 48
85712035 ATATACACAC
* * * *
85712045 ATCTCCTACAAATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
85712093 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * **
85712141 ATATCATATATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
85712189 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
85712237 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
85712285 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
85712333 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
85712381 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
85712429 ATCTCATATATATTTCACAGTAGCCATTCTGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
85712477 ATCTCATATATATTTCACATCAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
85712525 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
85712573 AT
1 AT
85712575 ATTTATCTTG
Statistics
Matches: 446, Mismatches: 36, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 446 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:85716139 original size:28 final size:28
Alignment explanation
Indices: 85716108--85716264 Score: 145
Period size: 28 Copynumber: 5.5 Consensus size: 28
85716098 CTGACTGATT
*
85716108 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
85716136 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
85716165 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
85716193 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * * *
85716222 TGGCACACATAATGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
*
85716250 TTGCACACATAGTGC
1 TCGCACACATAGTGC
85716265 CTCATAACTC
Statistics
Matches: 100, Mismatches: 25, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
27 1 0.01
28 55 0.55
29 43 0.43
30 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:85716168 original size:29 final size:29
Alignment explanation
Indices: 85716135--85716232 Score: 110
Period size: 29 Copynumber: 3.4 Consensus size: 29
85716125 GATTAAAGAA
85716135 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* **
85716164 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
85716192 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
85716221 CTGGCACACATA
1 CTCGCACACATA
85716233 ATGCTCGGTT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
28 23 0.40
29 34 0.60
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.22
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:85716175 original size:57 final size:57
Alignment explanation
Indices: 85716108--85716268 Score: 241
Period size: 57 Copynumber: 2.8 Consensus size: 57
85716098 CTGACTGATT
* * *
85716108 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
**
85716165 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * *
85716222 TGGCACACATAATGCTCGGTTGAAGAACTTGCACACATAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
85716269 TAACTCCAGC
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 95 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:85716340 original size:40 final size:40
Alignment explanation
Indices: 85716296--85716670 Score: 651
Period size: 40 Copynumber: 9.4 Consensus size: 40
85716286 CCTTCGAGGT
85716296 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
85716336 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
85716376 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
85716416 TTAGCCCGGATATATCATTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* * *
85716456 TTAGCCCGGATACATCACTAGCACAAATGCTCTTCGAAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* *
85716496 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
85716536 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
*
85716576 TTAGCTCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
* *
85716616 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
85716656 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
85716671 ATATACCTCT
Statistics
Matches: 316, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 316 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
Found at i:85718067 original size:37 final size:37
Alignment explanation
Indices: 85717956--85718069 Score: 185
Period size: 37 Copynumber: 3.1 Consensus size: 37
85717946 CGAATAGTCC
* * *
85717956 CCACACGTAGTTATCAGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
85717993 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
85718030 CCACACGTAGTCATCGGGTCTTACCCGGA-ATATATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATA-ATCT
85718067 CCA
1 CCA
85718070 AGTTTCATGT
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
36 3 0.04
37 70 0.96
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:85718257 original size:48 final size:48
Alignment explanation
Indices: 85718199--85718776 Score: 940
Period size: 48 Copynumber: 12.0 Consensus size: 48
85718189 ATATACACAC
* * *
85718199 ATCTCCTACATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
85718247 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* **
85718295 ATCTCATATATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
85718343 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
85718391 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
85718439 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
85718487 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATAGAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
85718535 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
85718583 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
85718631 ATCTCATATATATTTCACATTAGCCACTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
85718679 ATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
85718727 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
85718775 AT
1 AT
85718777 ATTTATCTTG
Statistics
Matches: 498, Mismatches: 32, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 498 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:85721606 original size:39 final size:39
Alignment explanation
Indices: 85721539--85721717 Score: 252
Period size: 39 Copynumber: 4.5 Consensus size: 39
85721529 ACAAAGCATA
* * *
85721539 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
85721579 CGAGACTTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
85721619 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
85721658 TGGGACTTAGCCCGGATATAACACTAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
85721697 CAGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
85721718 TTCTCCATTA
Statistics
Matches: 127, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 108 0.85
40 19 0.15
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:85722241 original size:110 final size:110
Alignment explanation
Indices: 85722048--85722267 Score: 422
Period size: 110 Copynumber: 2.0 Consensus size: 110
85722038 TGTGGATAGG
*
85722048 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTAATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
*
85722113 TAAACAAATGAATTTGTTTAATTACTTAGTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
85722158 CTACTCGATTGCTTTCTCCTTTCCCCTATCTAATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTCTCCTTTCCCCTATCTAATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
85722223 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
85722268 AATAGTCACA
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 108 1.00
ACGTcount: A:0.24, C:0.21, G:0.08, T:0.46
Consensus pattern (110 bp):
CTACTCGATTGCTTTCTCCTTTCCCCTATCTAATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
Found at i:85726183 original size:28 final size:28
Alignment explanation
Indices: 85726152--85726256 Score: 99
Period size: 28 Copynumber: 3.7 Consensus size: 28
85726142 ACATACATGC
85726152 ATATGGCCCACTT-GGCCCAATCTCATTT
1 ATATGGCCCA-TTAGGCCCAATCTCATTT
* * *
85726180 ATATTGCCCATTAGTCCCAATTCTCATTC
1 ATATGGCCCATTAGGCCCAA-TCTCATTT
* *
85726209 ATATGCCCCATCAGGCCCAAT-TCATATT
1 ATATGGCCCATTAGGCCCAATCTCAT-TT
*
85726237 CATAT-GCCCCTTAGGCCCAA
1 -ATATGGCCCATTAGGCCCAA
85726257 ATCACATGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
27 6 0.10
28 29 0.47
29 27 0.44
ACGTcount: A:0.25, C:0.33, G:0.11, T:0.30
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCTCATTT
Found at i:85726212 original size:29 final size:28
Alignment explanation
Indices: 85726151--85726256 Score: 110
Period size: 29 Copynumber: 3.7 Consensus size: 28
85726141 TACATACATG
85726151 CATATGGCCCACTT-GGCCCAA-TCTCATT
1 CATAT-GCCCA-TTAGGCCCAATTCTCATT
* *
85726179 TATATTGCCCATTAGTCCCAATTCTCATT
1 CATA-TGCCCATTAGGCCCAATTCTCATT
*
85726208 CATATGCCCCATCAGGCCCAATTCAT-ATT
1 CATATG-CCCATTAGGCCCAATTC-TCATT
*
85726237 CATATGCCCCTTAGGCCCAA
1 CATATGCCCATTAGGCCCAA
85726257 ATCACATGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
27 2 0.03
28 28 0.42
29 35 0.53
30 1 0.02
ACGTcount: A:0.25, C:0.34, G:0.11, T:0.30
Consensus pattern (28 bp):
CATATGCCCATTAGGCCCAATTCTCATT
Found at i:85726269 original size:28 final size:27
Alignment explanation
Indices: 85726165--85726269 Score: 77
Period size: 29 Copynumber: 3.7 Consensus size: 27
85726155 TGGCCCACTT
* *
85726165 GGCCC-AATCTCATTTATATTGCCCATTA
1 GGCCCAAATCACA-TTATA-TGCCCCTTA
* * * *
85726193 GTCCCAATTCTCATTCATATGCCCCATCA
1 GGCCCAAATCACATT-ATATGCCCC-TTA
* *
85726222 GGCCCAATTCATATTCATATGCCCCTTA
1 GGCCCAAATCACATT-ATATGCCCCTTA
85726250 GGCCCAAATCACATGTATAT
1 GGCCCAAATCACAT-TATAT
85726270 TCATGCTAAC
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 29 0.46
29 34 0.54
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.31
Consensus pattern (27 bp):
GGCCCAAATCACATTATATGCCCCTTA
Found at i:85727788 original size:16 final size:16
Alignment explanation
Indices: 85727764--85727795 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
85727754 AAGATCGAGA
85727764 TTTCAAGATTTTTGGG
1 TTTCAAGATTTTTGGG
*
85727780 TTTCGAGATTTTTGGG
1 TTTCAAGATTTTTGGG
85727796 GAGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
TTTCAAGATTTTTGGG
Found at i:85731624 original size:18 final size:17
Alignment explanation
Indices: 85731603--85731653 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
85731593 ACAATTCTTT
85731603 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCT-C
*
85731621 TCTCTTCATCTATTT-TC
1 TCTCTTCTTCT-TTTCTC
85731638 TCTTCTTCTTCTTTTC
1 TC-TCTTCTTCTTTTC
85731654 CTTTATAGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 6 0.21
18 19 0.68
19 3 0.11
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.63
Consensus pattern (17 bp):
TCTCTTCTTCTTTTCTC
Found at i:85732920 original size:28 final size:28
Alignment explanation
Indices: 85732880--85733023 Score: 184
Period size: 28 Copynumber: 5.2 Consensus size: 28
85732870 GGAGGAAACG
* *
85732880 TTCTGGTGGCTCTGCCACAAATATTTAT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
85732908 TTCTGATGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
85732936 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * *
85732964 TTCTGGTGGCCCTACCATAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
85732992 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
85733018 TTCTGG
1 TTCTGG
85733024 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
26 5 0.05
27 7 0.07
28 88 0.88
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:85734242 original size:48 final size:48
Alignment explanation
Indices: 85734171--85734263 Score: 186
Period size: 48 Copynumber: 1.9 Consensus size: 48
85734161 CTGAGCCTCT
85734171 GTATCACTAATATAAGCCAAAACGGCTTCGCATCCCTTTCGTACTTCC
1 GTATCACTAATATAAGCCAAAACGGCTTCGCATCCCTTTCGTACTTCC
85734219 GTATCACTAATATAAGCCAAAACGGCTTCGCATCCCTTTCGTACT
1 GTATCACTAATATAAGCCAAAACGGCTTCGCATCCCTTTCGTACT
85734264 AACTTCTCAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (48 bp):
GTATCACTAATATAAGCCAAAACGGCTTCGCATCCCTTTCGTACTTCC
Found at i:85736332 original size:17 final size:18
Alignment explanation
Indices: 85736310--85736343 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
85736300 CACATTGAAG
85736310 TGTTTT-AGTGAAAACCA
1 TGTTTTAAGTGAAAACCA
*
85736327 TGTTTTAATTGAAAACC
1 TGTTTTAAGTGAAAACC
85736344 CTTCTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TGTTTTAAGTGAAAACCA
Found at i:85737414 original size:28 final size:28
Alignment explanation
Indices: 85737383--85737492 Score: 100
Period size: 29 Copynumber: 3.9 Consensus size: 28
85737373 ACATACATGC
*
85737383 ATATGGCCCA-CTTGGCCCAATATCATTT
1 ATATGGCCCATC-AGGCCCAATATCATTT
* * *
85737411 ATATGACCCATCAGGCCCAATACTAATTC
1 ATATGGCCCATCAGGCCCAATA-TCATTT
*
85737440 ATATAGCCCATCAGGCCCAAT-TCATATT
1 ATATGGCCCATCAGGCCCAATATCAT-TT
* *
85737468 CATATGGCCCCTTAGGCCCAA-ATCA
1 -ATATGGCCCATCAGGCCCAATATCA
85737493 CATGCATATT
Statistics
Matches: 66, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
27 3 0.05
28 19 0.29
29 44 0.67
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26
Consensus pattern (28 bp):
ATATGGCCCATCAGGCCCAATATCATTT
Found at i:85737582 original size:17 final size:18
Alignment explanation
Indices: 85737560--85737603 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
85737550 TGACTATTAT
85737560 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
85737577 GGGCCCATTTAGCCCATTC
1 GGGCCCATATAGCCCA-TC
*
85737596 CGGCCCAT
1 GGGCCCAT
85737604 TTGGCCAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 7 0.30
18 7 0.30
19 9 0.39
ACGTcount: A:0.18, C:0.41, G:0.23, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:85737591 original size:18 final size:19
Alignment explanation
Indices: 85737568--85737605 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
85737558 ATGGGCCCAA
*
85737568 TAGCCCA-TCGGGCCCATT
1 TAGCCCATTCCGGCCCATT
85737586 TAGCCCATTCCGGCCCATT
1 TAGCCCATTCCGGCCCATT
85737605 T
1 T
85737606 GGCCAATTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.16, C:0.39, G:0.18, T:0.26
Consensus pattern (19 bp):
TAGCCCATTCCGGCCCATT
Found at i:85737614 original size:19 final size:19
Alignment explanation
Indices: 85737578--85737614 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
85737568 TAGCCCATCG
*
85737578 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
85737597 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
85737615 GCAATCCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:85737744 original size:8 final size:8
Alignment explanation
Indices: 85737728--85737762 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
85737718 CTTCTAGGCA
85737728 TTTCGGCT
1 TTTCGGCT
*
85737736 TTTCAGCT
1 TTTCGGCT
*
85737744 TTTCGGCA
1 TTTCGGCT
85737752 TTTCGGCT
1 TTTCGGCT
85737760 TTT
1 TTT
85737763 GCTGATTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.06, C:0.23, G:0.20, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:85745727 original size:22 final size:21
Alignment explanation
Indices: 85745684--85745727 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
85745674 CAAAACTAGC
* *
85745684 CTACTATTCCTTTCTTCCCAT
1 CTACTACTCCTTTCTTACCAT
*
85745705 CTACTACTCTCTTTCTTATCAT
1 CTACTACTC-CTTTCTTACCAT
85745727 C
1 C
85745728 ACTTTTGCCG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.16, C:0.36, G:0.00, T:0.48
Consensus pattern (21 bp):
CTACTACTCCTTTCTTACCAT
Found at i:85746931 original size:25 final size:24
Alignment explanation
Indices: 85746882--85746950 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 24
85746872 AGGAAGTGCT
85746882 AAAAGGGCTTTGCCCAGTTTACCG
1 AAAAGGGCTTTGCCCAGTTTACCG
85746906 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCC-AGTTTACCG
*
85746931 AAAAAGGCTTTGCCCCAGTT
1 AAAAGGGCTTTG-CCCAGTT
85746951 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
24 15 0.36
25 24 0.57
26 3 0.07
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCAGTTTACCG
Found at i:85748886 original size:40 final size:40
Alignment explanation
Indices: 85748785--85749009 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
85748775 TATTCGAATG
* * * *
85748785 ATATCCGGGCCAAGTCTCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
85748826 ACAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
85748866 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
85748906 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * * *
85748946 AAATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
85748986 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
85749010 CTTGCGCAAG
Statistics
Matches: 152, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.82
41 26 0.17
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:85757009 original size:40 final size:40
Alignment explanation
Indices: 85756915--85757139 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
85756905 TATTCAAATG
* *
85756915 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
85756956 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
85756996 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
85757036 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * * *
85757076 AAATTCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
85757116 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
85757140 CTTGCGCAAG
Statistics
Matches: 156, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.81
41 29 0.19
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:85761087 original size:22 final size:22
Alignment explanation
Indices: 85761045--85761088 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
85761035 AATTATTTAC
* *
85761045 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
85761067 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
85761089 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:85761389 original size:40 final size:40
Alignment explanation
Indices: 85761315--85761536 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
85761305 AACCCAAGTA
* * *
85761315 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATC
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
85761354 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
85761394 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
85761434 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * *
85761474 CCTTCGGGACTTAGCCCGGATATAGTCACTAGAACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
85761514 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
85761537 CATTCGAATA
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 152 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:85771909 original size:27 final size:27
Alignment explanation
Indices: 85771878--85772055 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85771868 TAAATTGTAC
85771878 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
85771905 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85771931 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
85771959 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
85771987 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85772014 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
85772041 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85772056 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:85771992 original size:82 final size:81
Alignment explanation
Indices: 85771879--85772034 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85771869 AAATTGTACA
* *
85771879 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
85771943 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
85771960 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
85772025 TGCGAGTTGA
65 TGCGAATTGA
85772035 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85772046 original size:82 final size:81
Alignment explanation
Indices: 85771875--85772055 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
85771865 GATTAAATTG
* *
85771875 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
85771940 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
85771956 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
85772020 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
85772038 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85772056 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85781588 original size:46 final size:46
Alignment explanation
Indices: 85781538--85781704 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
85781528 AGCATCCGAG
85781538 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAA
* * * *
85781584 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCTGAA
* * * * *
85781631 CTCGTTGAGTTGAGTCCGAGTTCACCTATGGATACGAATGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAA
85781677 CTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTA
85781705 GGGGGCGGTT
Statistics
Matches: 98, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 53 0.54
47 29 0.30
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAA
Found at i:85781688 original size:93 final size:93
Alignment explanation
Indices: 85781529--85781699 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
85781519 GGATGGTTGA
* * * * *
85781529 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATACGAATGCCCGAACTCGTTGAGT
85781594 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
85781622 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATACGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATACGAATGCCCGAACTCGTTGAGT
85781687 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85781700 ACTTAGGGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATACGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:85782402 original size:10 final size:10
Alignment explanation
Indices: 85782389--85782413 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
85782379 AAAAATAGTA
85782389 TAGATATAAT
1 TAGATATAAT
85782399 TAGATATAAT
1 TAGATATAAT
85782409 TAGAT
1 TAGAT
85782414 GATGAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (10 bp):
TAGATATAAT
Found at i:85788513 original size:146 final size:146
Alignment explanation
Indices: 85788249--85788541 Score: 568
Period size: 146 Copynumber: 2.0 Consensus size: 146
85788239 AACACAAGCC
*
85788249 ACAAAGCACTAAAGACAATAGGTATCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
1 ACAAAGCACTAAAGACAATAGGTACCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
*
85788314 GTACAGCCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTT
66 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTT
85788379 TACTGCAAATAGTCGT
131 TACTGCAAATAGTCGT
85788395 ACAAAGCACTAAAGACAATAGGTACCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
1 ACAAAGCACTAAAGACAATAGGTACCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
85788460 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTT
66 GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTT
85788525 TACTGCAAATAGTCGT
131 TACTGCAAATAGTCGT
85788541 A
1 A
85788542 GACATGCACA
Statistics
Matches: 145, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 145 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.30
Consensus pattern (146 bp):
ACAAAGCACTAAAGACAATAGGTACCAACTCAATATAAGCCATGTACATTTAGAACAACAGTTTA
GTACAACCCTTGCATTCAAGTGAACAAGCATATTTTTTACCTAATACATTTGAGTGCTCTATTTT
TACTGCAAATAGTCGT
Found at i:85792275 original size:23 final size:22
Alignment explanation
Indices: 85792240--85792286 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
85792230 ATACATAAAC
85792240 TAATAACAAAATATATATACTAT
1 TAATAACAAAATATATA-ACTAT
* *
85792263 TAATAATATAATATATAACTAT
1 TAATAACAAAATATATAACTAT
85792285 TA
1 TA
85792287 GTAAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.38
Consensus pattern (22 bp):
TAATAACAAAATATATAACTAT
Found at i:85792309 original size:30 final size:30
Alignment explanation
Indices: 85792273--85792346 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
85792263 TAATAATATA
85792273 ATATATAACTATTAGTAAAAATATTAATAC
1 ATATATAACTATTAGTAAAAATATTAATAC
*
85792303 ATATATAACTATTAGTAAAAATATTAATAT
1 ATATATAACTATTAGTAAAAATATTAATAC
*
85792333 ATATATAAGTATTA
1 ATATATAACTATTA
85792347 TTATAATATA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (30 bp):
ATATATAACTATTAGTAAAAATATTAATAC
Found at i:85795691 original size:17 final size:17
Alignment explanation
Indices: 85795669--85795702 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
85795659 CAAAACTAGT
*
85795669 TAAACTAATCCACCTAA
1 TAAACTAATCAACCTAA
85795686 TAAACTAATCAACCTAA
1 TAAACTAATCAACCTAA
85795703 ATTAACCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAACTAATCAACCTAA
Found at i:85797389 original size:31 final size:32
Alignment explanation
Indices: 85797351--85797411 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
85797341 CTCGCTGCAA
* *
85797351 TCTGGTGGCTTCGCCAC-ATATATATATCTAT
1 TCTGGTGGCCTAGCCACAATATATATATCTAT
*
85797382 TCTGGTGGCCTAGCCACAATATCTATATCT
1 TCTGGTGGCCTAGCCACAATATATATATCT
85797412 GGTGACTTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.58
32 11 0.42
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTAT
Found at i:85797426 original size:27 final size:26
Alignment explanation
Indices: 85797374--85797432 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
85797364 CCACATATAT
*
85797374 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTATTCTGGTGACCTAGCCACA
* * *
85797400 ATATCTATATCTGGTGACTTCGTCACA
1 ATATCTAT-TCTGGTGACCTAGCCACA
85797427 ATATCT
1 ATATCT
85797433 GGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (26 bp):
ATATCTATTCTGGTGACCTAGCCACA
Found at i:85798120 original size:20 final size:20
Alignment explanation
Indices: 85798095--85798134 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
85798085 TACTAAGTCG
*
85798095 TAAGTCCTTGTGACACGTCA
1 TAAGTCCATGTGACACGTCA
85798115 TAAGTCCATGTGACACGTCA
1 TAAGTCCATGTGACACGTCA
85798135 GATCTAGCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
TAAGTCCATGTGACACGTCA
Found at i:85805207 original size:15 final size:15
Alignment explanation
Indices: 85805152--85805229 Score: 65
Period size: 14 Copynumber: 5.4 Consensus size: 15
85805142 TAAAGATAAC
*
85805152 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
85805166 AAGAAATTCA-AGATA
1 AAGAAATCCAGA-ATA
* *
85805181 GA-AAACCCAGAATA
1 AAGAAATCCAGAATA
85805195 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
85805210 AA-AGATCCAGGATA
1 AAGAAATCCAGAATA
85805224 AAGAAA
1 AAGAAA
85805230 CCCAAGATAC
Statistics
Matches: 49, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
14 29 0.59
15 20 0.41
ACGTcount: A:0.60, C:0.13, G:0.15, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:85805219 original size:29 final size:29
Alignment explanation
Indices: 85805153--85805238 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 29
85805143 AAAGATAACA
*
85805153 AGAAAA-CC-GAATAAAGAAATTCAAGAT
1 AGAAAACCCAGAATAAAGAAATCCAAGAT
85805180 AGAAAACCCAGAATAAAGAAATCC-AGAAT
1 AGAAAACCCAGAATAAAGAAATCCAAG-AT
* * *
85805209 A-AAAGATCCAGGATAAAGAAACCCAAGAT
1 AGAAA-ACCCAGAATAAAGAAATCCAAGAT
85805238 A
1 A
85805239 CGATACTATG
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
27 6 0.12
28 7 0.14
29 35 0.70
30 2 0.04
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (29 bp):
AGAAAACCCAGAATAAAGAAATCCAAGAT
Found at i:85808281 original size:93 final size:93
Alignment explanation
Indices: 85808168--85808339 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
85808158 GCCCATAAGC
* * * *
85808168 GAACTCGGACTGAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
85808233 CGAGCTCAGATGCCTAGTTACATCTCAT
66 CGAGCTCAGATGCCTAGTTACATCTCAT
* *
85808261 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
85808326 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
85808340 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCAT
Found at i:85808335 original size:46 final size:46
Alignment explanation
Indices: 85808160--85808335 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
85808150 TGTAACCCGC
* * * * * *
85808160 CCATAAGCGAACTCGGACTGAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
85808206 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G--GAC-ATTTGCAT
* *
85808256 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
85808299 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
85808336 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 2 0.02
46 63 0.58
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:85814956 original size:20 final size:20
Alignment explanation
Indices: 85814931--85814970 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
85814921 AGACAATGTG
85814931 CTAAACACATAATTCTAGTA
1 CTAAACACATAATTCTAGTA
85814951 CTAAACACATAATTCTAGTA
1 CTAAACACATAATTCTAGTA
85814971 TGATGTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (20 bp):
CTAAACACATAATTCTAGTA
Found at i:85815965 original size:33 final size:34
Alignment explanation
Indices: 85815923--85815993 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 34
85815913 TAAAGTGAAC
85815923 TACTTAGTCTAATACTAA-CAACCTAGAATCAAA
1 TACTTAGTCTAATACTAAGCAACCTAGAATCAAA
*
85815956 TACTTAGTCTAATACTAAGCAACCTAGAATCAAT
1 TACTTAGTCTAATACTAAGCAACCTAGAATCAAA
85815990 TACT
1 TACT
85815994 ATCGAACTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
33 18 0.50
34 18 0.50
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (34 bp):
TACTTAGTCTAATACTAAGCAACCTAGAATCAAA
Found at i:85817634 original size:20 final size:20
Alignment explanation
Indices: 85817534--85817639 Score: 74
Period size: 20 Copynumber: 5.3 Consensus size: 20
85817524 AGGCACCAGA
* *
85817534 TGCAAACAGAGACAC-GATTG
1 TGCAAACAGAGGCACTGA-AG
* * *
85817554 TGCAAGCAGAGGCACCGTAG
1 TGCAAACAGAGGCACTGAAG
85817574 TGCAAACAG-GGACACTGAAG
1 TGCAAACAGAGG-CACTGAAG
* * ** *
85817594 TGTATATGGAGGCA-TATAAG
1 TGCAAACAGAGGCACT-GAAG
85817614 TGCAAACAGAGGCACTGAAG
1 TGCAAACAGAGGCACTGAAG
85817634 TGCAAA
1 TGCAAA
85817640 TCTTGTATAA
Statistics
Matches: 64, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
19 3 0.05
20 57 0.89
21 4 0.06
ACGTcount: A:0.38, C:0.18, G:0.29, T:0.15
Consensus pattern (20 bp):
TGCAAACAGAGGCACTGAAG
Found at i:85821500 original size:48 final size:48
Alignment explanation
Indices: 85821429--85821526 Score: 153
Period size: 48 Copynumber: 2.0 Consensus size: 48
85821419 AATAATCTAT
* * *
85821429 ACATAGTCTCATTGACCTATCTTTCTTTTTCACAAACAAAACCGAAGC
1 ACATAATCTCATTAACCTATCTTTCTTTTCCACAAACAAAACCGAAGC
85821477 ACATAATCTCATTAATCC-ATCTTTCTTTTCCACAAACAAAACCGAAGC
1 ACATAATCTCATTAA-CCTATCTTTCTTTTCCACAAACAAAACCGAAGC
85821525 AC
1 AC
85821527 CCTAAGGTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 44 0.96
49 2 0.04
ACGTcount: A:0.36, C:0.29, G:0.06, T:0.30
Consensus pattern (48 bp):
ACATAATCTCATTAACCTATCTTTCTTTTCCACAAACAAAACCGAAGC
Found at i:85828115 original size:28 final size:28
Alignment explanation
Indices: 85828083--85828184 Score: 150
Period size: 28 Copynumber: 3.6 Consensus size: 28
85828073 CAAATATGGT
* *
85828083 ACTTAGTGTATGAAATATTGAGAATGGC
1 ACTTAGTGTACGAAATATTGAGAATGAC
85828111 ACTTAGTGTACGAAATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
85828139 ACTTAGTGTGCGAGATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
85828167 ACTTAGTGTGCAAAATAT
1 ACTTAGTGTACGAAATAT
85828185 CGAATGATTC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (28 bp):
ACTTAGTGTACGAAATATTGAGAATGAC
Found at i:85830197 original size:29 final size:29
Alignment explanation
Indices: 85830165--85830380 Score: 195
Period size: 29 Copynumber: 7.5 Consensus size: 29
85830155 AAGTGAACAT
85830165 AGGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
* * ****
85830194 AGGCACTGTGTGTGCGAGTTCCG-TAACC
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
*
85830222 AAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
* * ****
85830251 AGGCACTGTGTGTGCGAGTTCCGTAACCG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
85830280 A-GCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
* * ****
85830308 AGGCACTGTGTGTGCGAGTTCCG-TAACC
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
* *
85830336 AAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGATCGGTTGTTG
*
85830365 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
85830381 AAATGAGATC
Statistics
Matches: 140, Mismatches: 42, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
28 63 0.45
29 70 0.50
31 7 0.05
ACGTcount: A:0.17, C:0.18, G:0.37, T:0.28
Consensus pattern (29 bp):
AGGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:85830235 original size:57 final size:57
Alignment explanation
Indices: 85830167--85830380 Score: 383
Period size: 57 Copynumber: 3.7 Consensus size: 57
85830157 GTGAACATAG
85830167 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCAA
*
85830224 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCAA
85830281 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCAA
* *
85830338 GCACTGTGTGTGCAAGATCGGTTGTTGGGGCACTAAGTGTGTG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACT--GTGTGTG
85830381 AAATGAGATC
Statistics
Matches: 151, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
57 144 0.95
59 7 0.05
ACGTcount: A:0.17, C:0.18, G:0.36, T:0.29
Consensus pattern (57 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAACCAA
Found at i:85830236 original size:28 final size:28
Alignment explanation
Indices: 85830196--85830350 Score: 157
Period size: 28 Copynumber: 5.5 Consensus size: 28
85830186 GGTTGTTGAG
85830196 GCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
85830224 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
*
85830253 GCACTGTGTGTGCGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
85830281 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
85830310 GCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
85830338 GCACTGTGTGTGC
1 GCACTGTGTGTGC
85830351 AAGATCGGTT
Statistics
Matches: 95, Mismatches: 30, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
28 54 0.57
29 41 0.43
ACGTcount: A:0.17, C:0.21, G:0.35, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAA
Found at i:85838189 original size:991 final size:988
Alignment explanation
Indices: 85834255--85838836 Score: 6505
Period size: 989 Copynumber: 4.7 Consensus size: 988
85834245 CTATATAGAC
* * *
85834255 TACTTAAACATGATTAGAAGAACGAGTTTATGTTTTTGAACTATTTTGAAACTTAAAAATGAAAA
1 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
* * *
85834320 TAAACCAGTCTGTCACAGTGAATGATAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
66 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
* * * ** *
85834385 ATCAATTGTCTGTACTTAAGTAAACTTAGTTGTGTTTTAGGATATTGTTTTAGCATTTTTAGAAC
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAAC
* *
85834450 ATTGCATAAGAAGCTTGGATAATGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
196 ATTGCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
* * **
85834515 GGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAGTGTTTGCT
261 GGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGCT
* * * * *
85834580 GGGGCAAAGAGTTGGACATTTTGTCAAAATGGATACTGTGGCAATGTCGAGAAGATTGAGTCAAC
326 GGGGCAAAGAGTTGGACATTTTG-CCAAATTGATGCTGTGGCAATGTCGAGAAGACTGAGTTAAC
* * * * * **
85834645 ACTCAGCGGATGCCAGTTTCAGCCCAAATTTACTTCTACCAGAAAAAA-CAGCCTAAAAAATAAA
390 ACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCA-AAAAAATCTGCCTAAAAAATAGG
* * *
85834709 AGATGATAATATTGGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTTCTG
454 AGAAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTT-TG
* *
85834774 GATTTA-CCTAGGAAAAAGGCTATAAAAAGCCAACTAAGGAAACACTAAACGACGAACAAAAAAG
518 GATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTAAGGAAACACTAAACGACAAAC-AAAAAG
* ** * * * *
85834838 TAGGAGAGATCCTTACACGTGAATAAGGGTTTGGCTACGTAAGAGTAAGAAAGTCGAAGGCAATC
582 TGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAGTC
* * * * * * * * *
85834903 TTTCTTAGCCATAACAAGATGTTATGCTGCCAAAGTCTGGACTGCGCAAGCGATAGCTGTTTCCC
647 CTTCTTAGCCATAACAAGATATTGTGTTTCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCC
* *
85834968 AAAGTTCTTTTATTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGAT-AAGCACAA
712 AAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAA-CACAA
* * * * *
85835032 CGTCAGATAATATTTTGGTTTGGAATTTTATTTCTCAACCCATTAGCCAAATATCATAAGGTTGG
776 TGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTGG
85835097 GATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTG
841 GATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTG
* * * *
85835162 TTTCATTTGATTGTTCTTATTACTTAATAAAAATGGAAATGATCTCTAGACATAAAATACTGTTC
906 TTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTTC
*
85835227 ACATACTTATAAACTGAT
971 GCATACTTATAAACTGAT
* * * *
85835245 TACTTAAACATCATCAGAAGAATGATTTTACGTTTTTGAACTATTTTGAAGCTCAAAAATGAAAA
1 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
* * * *
85835310 TAAACCGTTCTGTCATAGTGAATGATAACTCTTGAAAATAGTTATAATTCATGCCTGTAGGCTGG
66 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
*
85835375 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTGTAGAAC
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAAC
*
85835440 ATTGCAAAAGAAGCTTGGAC-GATGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
196 ATTGCATAAGAAGCTTGGACAG-TGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTA
* *
85835504 GGGCTATGTTTGGTGGTTTGGTAGGTGTAGGATATGGAGAAAGAAACAAAGGAGTAAACGTTTGC
260 GGGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGC
* * *
85835569 TAGGGCAAAGAGTTAGACATTTTGCCAAATTAGATGTTGTGGCAATGTCGAGAAGACTGAGTTAA
325 TGGGGCAAAGAGTTGGACATTTTGCCAAATT-GATGCTGTGGCAATGTCGAGAAGACTGAGTTAA
* * * * *
85835634 CACTCAACGTATGCTAGTTTCAGTCCAACTTTACTTGTACCAGAAAAATCTGCCTAAAAAATAGT
389 CACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAATCTGCCTAAAAAATAGG
* * * *
85835699 AGAAGATAAT-TTGGGTTATTGAGAAAAGAATTTAAACAGAGGAGAATATAAATATGAGTTTTGG
454 AGAAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTTT-G
* * *
85835763 GATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACAGTAAACGACGAACAAAAAGT
518 GATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTAAGGAAACACTAAACGACAAACAAAAAGT
** * *
85835828 GGGAGAGATCCTTAGGCGTGAATAACAGTTTGGCTATGTAAGGGAAAGAAAGTCGAACACAGTCC
583 GGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAGTCC
* * * *
85835893 TTCTTAGCCATAACAAGACA---TGTTTCTGAAATGTGGACTGGGCAAGCGAAAGCTGTTTACCA
648 TTCTTAGCCATAACAAGATATTGTGTTTCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCCA
* * *
85835955 AAGTTCTTTTGTTATTTCTATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTAAACACAATT
713 AAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATG
* *
85836020 TCGGATAATATTTTGGTTTGGAATTTTATTTCTCAGCCCATGAGCCAAATCTCATAAGGTTGGGA
778 TCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTGGGA
85836085 TTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTGTT
843 TTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTGTT
* *
85836150 TCATTAGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAGAAGACTGTTCGC
908 TCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTTCGC
*
85836215 ATACTTATAAATTGAT
973 ATACTTATAAACTGAT
* * *
85836231 TACTTAAACATAATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAACTTAAAA
1 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
* *
85836296 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGTTAG
66 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
* *
85836361 GTCAATTGTTTGTATTTAAGTGAACTTAGTTTCATTTTAGGATATTATTTTAGCATTTTTAGAAC
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAAC
* *
85836426 ATTGCGTAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGCTACTTTTAATTTCTTGTGGTAG
196 ATTGCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
* ** * *
85836491 GGCTATGGTTGGTGGTTTGGTAGGTGTTGTATATGGAGAAAGAAACAAAGGAGTGAACATTTGCT
261 GGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGCT
* * * * *
85836556 AGGGCGAATAGTTGGACATTTTGCCAAAATG--GATGTGGCAATGTC-AGGAAGACTGAGTTAAC
326 GGGGCAAAGAGTTGGACATTTTGCCAAATTGATGCTGTGGCAATGTCGA-GAAGACTGAGTTAAC
* * * * * * *
85836618 ACTTAACACAAGCCAGTTTTAGGCCAACTTTACTTGCACCAAAAAAATCTACCTAAAAAATA-GA
390 ACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAATCTGCCTAAAAAATAGGA
* * * * * *
85836682 GAAGATAATCTTAGTTTGTTGAAAAAGGAATTTAAATATAGGAGAAGATAAACATGGGTTTTTGG
455 GAAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGG-TTTTGG
*
85836747 ATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAACGACAAAAAACAAAAA
519 ATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTAAGGAAACACTAAACGAC---AAACAAAAA
*
85836812 GTGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTATGTAAGGGAAAGAAAGTCGAAGACAGT
581 GTGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAGT
* * * *
85836877 CCTTCTTAGCCATCACAAGATGTTGTGTTTCCGAAGTGTGGACTGGGTAAGCGAAAGCTATTTCC
646 CCTTCTTAGCCATAACAAGATATTGTGTTTCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCC
* *
85836942 CAAAGTTGTTTTGTTATTTCCATCT-GTGTTCCTTCGAAAGATTGAATTAAAGTAGTTGAACACA
711 CAAAGTTCTTTTGTTATTTCCAT-TAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACA
* * * * *
85837006 ATTTCAGATAATATTTTGGTTTGGAATTTTATTTTCCAGCCGATGATCTAAATCTCATAAGGTTG
775 ATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTG
* *
85837071 GGATTACTTTCAATCAAACCTTCAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACT
840 GGATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACT
* * * *
85837136 GTTTCATTCGATTGTTCTTATTTCTTAATTAAAATGCAAAAGATCTTTAGACATAGAAGACTGTT
905 GTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTT
*
85837201 CGTATACTTATAAACTGAT
970 CGCATACTTATAAACTGAT
* * *
85837220 TACTTAAATATGACCAGATGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
1 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
85837285 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
66 TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
* * * * * * *
85837350 CTTAATTTTTTGTACTTGAGTGAACTTAGTTGCATTTTAGGATTTTATTTTAGCAGTTTTAGAAT
131 GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAAC
85837415 ATTGCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
196 ATTGCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
* *
85837480 GGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAATCAAAGGAGTGAACATTTGCT
261 GGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGCT
*
85837545 GGGGCAAAGAGTTGGACATTTTGCCAAGATTGATGTTGTGGCAATGTC-AGGAAGACTGAGTTAA
326 GGGGCAAAGAGTTGGACATTTTGCCAA-ATTGATGCTGTGGCAATGTCGA-GAAGACTGAGTTAA
*
85837609 CACTCAATGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAAAT-TGCCTAAAAAATAG
389 CACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACC-AAAAAAATCTGCCTAAAAAATAG
* * * *
85837673 GAGAAGATAATCTTTGGTCATTAAAAAAAGAATTTAAATAGCGGAGAAGATAAATATGGGCTTTT
453 GAGAAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGG-TTTT
* * *
85837738 GGGTTTACCCTA-GAAAAAAGGCTATAAAAAGCCAAATAAGGAAACACTAAATGACAAACAATAA
517 GGATTTACCCTAGGAAAAAA-GCTATAAAAAGCCAACTAAGGAAACACTAAACGACAAACAA-AA
* * **
85837802 AGTGGGAGAGATCCTTAGGCGTGACTAAGGGTTTGGCTACATAAGGGAAAGAAAGTTTAAGACAG
580 AGTGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAG
** * * *
85837867 TTTTTCTTAGCCATCACAAGATATTGTGTTTCCGAAGTGTGGACAGGGCAAGCGAAAGCTGTTCC
645 TCCTTCTTAGCCATAACAAGATATTGTGTTTCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTC
* * *
85837932 CCAAAGTTGTTTTGTTATTTCCATTAGTGTTCCTTCGAAATATTGAATTCAAGTAGTTGAACACA
710 CCAAAGTTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACA
* * * * *
85837997 ATGTCAGATAATATTTTGGTTTCGAATTTTGTTTCCCAGCCTATGATCCAAATCTGATAAGGTTG
775 ATGTCAGATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTG
*
85838062 GGATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTATT
840 GGATTACTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACT
* *
85838127 ATTTCATTTGGTTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTT
905 GTTTCATTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTT
* *
85838192 TGCATACTTATAAAATGAT
970 CGCATACTTATAAACTGAT
* *
85838211 TACTTAAACATGATCTGAAGAATGGGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
1 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
* * *
85838276 TAAACCATTCTG-CAATAATGAATGACAACTCTTGAAAAGAGTTATAATTCATGCCTCTAGGCTG
66 TAAACCATTCTGTC-ATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTG
* *
85838340 GGTCAATTGTCTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAA
130 GGTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAA
* * * *
85838405 CATTGCATACGAA-CATTGGATAGCGCTTAAATATTTTTATTTGTTACTTTTAATTTCTTGTGGT
195 CATTGCATAAGAAGC-TTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGT
* *
85838469 AGGGCTGTGTTTGGTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTG
259 AGGGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTG
* * * * *
85838534 CTGGGG-AAAGAGTTGGAGATTTTTTCAAAATGGATGCTGTGGCAATGTCGAGAAGACTGA-TAA
324 CTGGGGCAAAGAGTTGGACA-TTTTGCCAAATTGATGCTGTGGCAATGTCGAGAAGACTGAGTTA
* * * * * *
85838597 ACACTCAACGCTTGCCAATTTCAGCCCAACTATACTTGTACCAGAAAAATCCGTCTAAAAAATAG
388 ACACTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAATCTGCCTAAAAAATAG
* * *
85838662 GTGAAGATAATATTGGG---TT-------G----T---TA-AGGAGAAGATAAACATGGGTTTCT
453 GAGAAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTT-T
** * * * * *
85838709 AAATTTACCCTTGGAGAAAAGCTATAAAAAGCCAACTGAGGAATCACTAAACGACGAACAAAGAA
517 GGATTTACCCTAGGAAAAAAGCTATAAAAAGCCAACTAAGGAAACACTAAACGACAAACAAA-AA
* *
85838774 GTGGGAGAGATCCTTAGGC-----TAAGGGTTTGGCTACATAAGGGAAAGAAAGTCGAAGGCAGT
581 GTGGGAGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAGT
85838834 CCT
646 CCT
85838837 AACCGGTATC
Statistics
Matches: 3244, Mismatches: 315, Indels: 90
0.89 0.09 0.02
Matches are distributed among these distances:
966 39 0.01
970 4 0.00
971 83 0.03
972 8 0.00
975 1 0.00
979 1 0.00
982 11 0.00
983 172 0.05
984 4 0.00
985 1 0.00
986 706 0.22
987 3 0.00
988 8 0.00
989 826 0.25
990 504 0.16
991 685 0.21
992 82 0.03
993 106 0.03
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (988 bp):
TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
TAAACCATTCTGTCATAGTGAATGAAAACTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGG
GTCAATTGTTTGTACTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCATTTTTAGAAC
ATTGCATAAGAAGCTTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAG
GGCTATGTTTGGTGGTTTGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGCT
GGGGCAAAGAGTTGGACATTTTGCCAAATTGATGCTGTGGCAATGTCGAGAAGACTGAGTTAACA
CTCAACGCATGCCAGTTTCAGCCCAACTTTACTTGTACCAAAAAAATCTGCCTAAAAAATAGGAG
AAGATAATCTTGGGTTATTGAAAAAAGAATTTAAATAGAGGAGAAGATAAATATGGGTTTTGGAT
TTACCCTAGGAAAAAAGCTATAAAAAGCCAACTAAGGAAACACTAAACGACAAACAAAAAGTGGG
AGAGATCCTTAGGCGTGAATAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGACAGTCCTTC
TTAGCCATAACAAGATATTGTGTTTCCGAAGTGTGGACTGGGCAAGCGAAAGCTGTTTCCCAAAG
TTCTTTTGTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCA
GATAATATTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATAAGGTTGGGATTA
CTTTCAATGAAACCTTAAACTATTTTTATGGATGCAGTATATATCTAATTTACTTTACTGTTTCA
TTTGATTGTTCTTATTTCTTAATTAAAATGCAAATGATCTCTAGACATAAAAGACTGTTCGCATA
CTTATAAACTGAT
Found at i:85844255 original size:15 final size:15
Alignment explanation
Indices: 85844232--85844262 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
85844222 TCAAAAATTC
85844232 CAATACAAAACATAT
1 CAATACAAAACATAT
*
85844247 CAATCCAAAACATAT
1 CAATACAAAACATAT
85844262 C
1 C
85844263 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:85844799 original size:14 final size:15
Alignment explanation
Indices: 85844782--85844810 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
85844772 TCACGAAAAT
85844782 TTCACACAT-ATAAA
1 TTCACACATAATAAA
85844796 TTCACACATAATAAA
1 TTCACACATAATAAA
85844811 CACATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:85852706 original size:992 final size:992
Alignment explanation
Indices: 85845465--85854937 Score: 16174
Period size: 990 Copynumber: 9.6 Consensus size: 992
85845455 AAATATTAAA
* * * * * * * **
85845465 GCTACAAAAAGCTAACTGAAGAAACACTAAATGATGAACAAAAAAGTGGGAGAGAT-CCTA-A-G
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACATGTTTAGACG
* * * ** * * *
85845527 -G-CTAAGGGTTTGGCTATGTAAGG-AAAGAAAGTTGAAGGAAATCCTTCTTAGCCATTACAAGA
66 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
* * * * * * * * * * *
85845589 TGTTGTGCTGCCG-AG-TTG---TGGGTAAGCAAAAGCTGGTTCCCAAAGTTATTTTGTTATTTT
131 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
* * * * * **
85845649 CATTAGTGTTGCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGCCAGACAAAATCCTGGTT
196 CATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
* * * * * * * *
85845714 TAGAATTTTATTTCCCAGCCTATTAGCCAAATCTCATAAGGTTAGAAGTACTTTCAATGAAACTT
261 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
* * * * * * *
85845779 TAAACTATCTTTATGGATGTAGTATATATCTAATTTACTTTACAATTTCATTTGATTGTTCTTAT
326 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
* * * * * * *
85845844 TTTTTAATTAAAATGCAAATGATCTCTAGACATAGAAGACTATTCGCATACTTATAAACTGATTA
391 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
* *
85845909 CTTAAACATGATCAGAAGAATGATTTTATGTTTTTGAACTATTTTGGAGCTTAAAAATG-AAATA
456 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT-
* * * *
85845973 AAAT-ATTCTGTCATAGTGAATGATAATTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCTGGG
520 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
* * * * * * * * *
85846037 TCAATTTTCTGTACTTAAGTGAACTTAGTTGCATTTTAGGATA-TTATTATAGTAATATTAGAAA
585 TCAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATT-TAGCACTTTTAGAAC
* * * * *
85846101 ATTGCATAAGAAGATTGGACAGTGCTTAAATATTATTATTTGTTACTTTTAACTTCTTGTGGTAG
649 ATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAG
* * * * * *
85846166 AGTTGTGTTTGGTGGT-TAGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAACGTTTGC
714 GGCTGTGTTTGGTGGTCT-GGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTAC
** * * * *
85846230 TGGGGCAAAGAGTTGGATGTTTTGCGAAAATGGATGCTT-TGGCAATGTAGGGAAGACTGAGTTA
778 TGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATG-TTGTGGCAATGTCGGAAAGACTGATTTA
* * * * *
85846294 ACACTCAGCGCAT-ACAGTTTCAGCCCAACTTCACCTGTT-CCAGAAAAA-TCTGCCTAAAAAAT
842 ACACTCAACGCATGCCAATTTCAGCCCAACTTTA-CTTTTACCA-AAAAAGTCTGCCTAAAAAAT
* * * * *
85846356 AGGAGAAGAAAATATTGGGTTG-TTGAAAAAAGAATTTAAATAGAGGAGAAGGTAAACATGGTTT
905 AGGAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTT
* *
85846420 TTG-GATTTACTCTAGGAAAAAAT
970 TTGCGATTTACCCTACG-AAAAAT
* * * * * *
85846443 -CTATAAAAAACCAACTAAGGAAACACTACATGACGAA-AAAAAAGTGGGAGATATCG-TTAGGA
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACAT-GTTTA-GA
* * * * * * * * *
85846505 -GTGTATAAGGGTATGGCTACGTAAGGGAAAGAAAGTCGAATGCAGTCCTTCTTAGCAATAACAA
64 CGTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
* * * * * * * *
85846569 GATGCT-GTGCTGCCGAAGTGTGGATTGGGCAAGCGAAAATTGTTTCCCAAAGTTCTTTTGATAT
129 GATG-TAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGT
* * *
85846633 TTCCATTAATGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACATAATTTCAGATAATATTTTG
193 TTCCATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTG
* * * *
85846698 GTTTGGAATTTTATTTCCCAATCC-ATGAGCCAAATCTCAGAAGGTTGGGATTACTTTCAATG--
258 GTTTGGAATTTTATTTCCC-AGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAA
* * * * *
85846760 ----------A-----A-GGATGAAGTATATATCTAATTTACTTTACTGTTTCATTTGATTGTTC
322 ACCTTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTC
*
85846809 TTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACAT-ATTACAAACTG
387 TTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTG
* *
85846873 ATTACTTAAACATGATCAGAAGAATAAGTTTATGTTTTGGAACTATTTTGAAGCTTAAAAATGAA
452 ATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAA
85846938 AATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCT
517 AATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCT
* * * *
85847003 AGGTCAATTGTCTGCACTTAAGTGAGCATAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGA
582 GGGTCAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGA
* * *
85847068 ACATTGTACAAGAAGATTGGATAGTGCTTAAATATTACTATTTGATACTTTTAATTTCTTGTGGT
647 ACATTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGT
*
85847133 AGGGCTGTGTTTGGTGGTCTGGTTGGTGTAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTA
712 AGGGCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTA
85847198 CTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTA
777 CTGGGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTA
* * *
85847263 ACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAATTCTTCCTAAAAAATAT
842 ACACTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAG
*
85847328 GAGAAGACAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGA-AAGACATGGGTTT
907 GAGAAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAA-ACATGGGTTT
*
85847392 TGCGATTTACCCTACAAAAAAT
971 TGCGATTTACCCTACGAAAAAT
*
85847414 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACCAAAAAAGTGTGAGACATGTTTAGAC
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAA-CAAAAAAGTGGGAGACATGTTTAGAC
* ** *
85847479 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTAAAAGGCACCCCTTCTTAGCCATCGCAAG
65 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
* *
85847544 ATGAAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCGTTTGTTGTTT
130 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
85847609 CCATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
195 CCATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
85847674 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
260 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
*
85847739 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATAGTTCTTA
325 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTA
85847804 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
390 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
*
85847869 ACTTAAACATGATCAGAAGAATGGGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
455 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
*
85847934 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGC
520 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
85847999 TCAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
585 TCAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
85848064 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGG
650 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGG
*
85848129 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGAAAAAAGAAACAAAGGAGTGAACGTTTACTG
715 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTG
85848194 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGA-TTAACA
780 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACA
*
85848258 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAA-TCTTCCTAAAAAATA-GAG
845 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAG
* *
85848321 AAGACAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGA-AGACATGGGTTTTGCG
910 AAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCG
85848385 ATTTACCCTAC-AAAAAT
975 ATTTACCCTACGAAAAAT
85848402 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGT-GGAGACATGTTTAGACG
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACATGTTTAGACG
*
85848466 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGT-AAAGGCA--CCTTCTTAGCCATCGCAAGA
66 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
*
85848528 TGAAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTC-TTTGTTGTTTC
131 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
85848592 CATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
196 CATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
85848657 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
261 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
85848722 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
326 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
85848787 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
391 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
85848852 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
456 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
85848917 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
521 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
85848982 CAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
586 CAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
85849047 TGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGGG
651 TGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGGG
85849112 CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTT-GAAAAAGAAACAAAGGAGTGAACGTTTACT-G
716 CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
*
85849175 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTAATTTAACAC
781 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
*
85849240 TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACAAAAAAAGTCTGCCTAAAAAATAGGAGA
846 TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGA
*
85849305 AGTTAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCGA
911 AGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCGA
85849370 TTTACCCTACGAAAAAT
976 TTTACCCTACGAAAAAT
85849387 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACCAAAAAAGTGGGAGACATGTTTAGAC
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAA-CAAAAAAGTGGGAGACATGTTTAGAC
* * *
85849452 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTAAAAGGCATCCCTTCTTAGCCATCGCAAG
65 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
*
85849517 ATGAAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
130 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
85849582 CCATTAGTGTTCCTTCGAAAGATTGAA-TTAAGTAGTTGAACACAATGTCAG-TAATATTTTGGT
195 CCATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
85849645 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
260 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
85849710 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTA
325 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTA
85849775 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
390 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
85849840 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
455 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
85849905 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
520 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
85849970 TCAATTGTCTGCACTTAAGTGAACTT-ATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
585 TCAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
85850034 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGG
650 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGG
*
85850099 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGAAAAAAGAAACAAAGGAGTGAACGTTTACTG
715 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTG
*
85850164 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTAATTTAACA
780 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACA
*
85850229 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACAAAAAAAGTCTGCCTAAAAAATAGGAG
845 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAG
*
85850294 AAGTTAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCG
910 AAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCG
85850359 ATTTACCCTACGAAAAAT
975 ATTTACCCTACGAAAAAT
85850377 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACCAAAAAAGTGGGAGACATGTTTAGAC
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAA-CAAAAAAGTGGGAGACATGTTTAGAC
*
85850442 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCA-TCCTTCTTAGCCATCGCAAG
65 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
85850506 ATG-AGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
130 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
85850570 CCATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
195 CCATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
85850635 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
260 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
85850700 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTA
325 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTA
85850765 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
390 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
85850830 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
455 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
85850895 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
520 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
85850960 TCAATTGTCTGCACTTAAGTGAACTT-ATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
585 TCAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
85851024 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGG
650 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGG
*
85851089 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGAAAAAAGAAACAAAGGAGTGAACGTTTACT-
715 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTG
85851153 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACA
780 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACA
*
85851218 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACAAAAAAAGTCTGCCT-AAAAATAGGAG
845 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAG
85851282 AAGAT--TATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCG
910 AAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCG
85851345 ATTTACCCTACGAAAAAT
975 ATTTACCCTACGAAAAAT
85851363 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACCAAAAAAGTGGGAGACATGTTTAGAC
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAA-CAAAAAAGTGGGAGACATGTTTAGAC
*
85851428 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTAAAAGGCATTCCTTCTTAGCCATCACAAG
65 GTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAG
*
85851493 ATGAAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
130 ATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTT
*
85851558 CCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
195 CCATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGT
85851623 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
260 TTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACC
*
85851688 TTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTTA
325 TTCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTA
85851753 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
390 TTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATT
85851818 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
455 ACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAT
85851883 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
520 AAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGG
85851948 TCAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
585 TCAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACA
85852013 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGG
650 TTGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGG
*
85852078 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTC
715 GCTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTG
*
85852143 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTTGGAAAGACTGATTTAACA
780 GGGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACA
85852208 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAG
845 CTCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAG
*
85852273 AAGTTAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCG
910 AAGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCG
*
85852338 ATTTACCCTATGAAAAAT
975 ATTTACCCTACGAAAAAT
*
85852356 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACATGTTTAGACG
85852421 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
66 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
* * * * *
85852486 TGTAGTACTACCGAAGCGTGCACTAGGCAAGTGAAAGTTATTTCCTAAAGTTCTTTTGATGTTTC
131 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
*
85852551 CATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
196 CATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
*
85852616 TGGAATTTTATTTCCCAGCCTATGAGTAAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
261 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
85852681 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
326 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
85852746 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
391 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
85852811 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
456 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
85852876 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
521 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
* * * *
85852941 CAATTGTCTGAACTTAAGTGAACCTAGTTGCAGTTTAGGATACTAATTTAGCACTTTTAGAACAT
586 CAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
*
85853006 TGTACAAGAAGATTGGATAGTGCTTAATTATTATTATTTGTTACTTTTAATTTTTTGTGGTAGGG
651 TGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGGG
*
85853071 CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTAG
716 CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
85853136 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
781 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
* * *
85853201 TCAACGCATGCCAATTTCAGCCTAACTTTACTTTTACCAAAACAGTTTGCCTAAAAAATAGGAGA
846 TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGA
85853266 AGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCGA
911 AGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCGA
*
85853331 TTTACCCTATGAAAAAT
976 TTTACCCTACGAAAAAT
* *
85853348 TCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACATGTTTAGACG
85853413 TGAA-AAGTGTTTGGCTACGTAAGG-AAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
66 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
*
85853476 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGTGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
131 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
* *
85853541 TATTAGTGTTCCTTTGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
196 CATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
*
85853606 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGCTGGGATTACTTTTAATGAAACCT
261 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
85853671 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
326 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
*
85853736 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGATCACATAATTATAAACTGATTA
391 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
85853801 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
456 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
* * *
85853866 AATTATTTTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGTTGGGT
521 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
* *
85853931 CAATTGTCTACACTTAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
586 CAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
* * *
85853996 TGTACAAGAAGATTGGATAGTGCTTAAATACTATTATTTGTTACTTTTAATTTCTTGTGGTAAGG
651 TGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGGG
* **
85854061 CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTTGAAAAAGAAACAAAGGAGTGAACGTTTACTTC
716 CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
85854126 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
781 GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
85854191 TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGA
846 TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGA
*
85854256 ATATAATATTGGGTTGTTTT-AAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCGA
911 AGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCGA
*
85854320 TTTACCCTATGAAAAAT
976 TTTACCCTACGAAAAAT
* * *
85854337 GCTATAAAAATCCAAATGAGGAAACACTAAATGACGAACAAAAAAGTGGGAGAGATGTTTAGACG
1 GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACATGTTTAGACG
85854402 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
66 TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
85854467 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
131 TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
* *
85854532 CATTAGTGTTCCTTCAAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
196 CATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
85854597 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
261 TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
* *
85854662 TCAACTATTTGTATGAATGCAGTGTATATCAAATTTACTTTACTATTTCATTTGATTGTTCTTAT
326 TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
85854727 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
391 TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
*
85854792 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAAAGAAAATA
456 CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
85854857 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
521 AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
85854922 CAATTGTCTGCACTTA
586 CAATTGTCTGCACTTA
85854938 TGTAACGCTC
Statistics
Matches: 8163, Mismatches: 257, Indels: 137
0.95 0.03 0.02
Matches are distributed among these distances:
968 74 0.01
969 389 0.05
970 61 0.01
971 44 0.01
972 42 0.01
973 6 0.00
974 239 0.03
975 1 0.00
976 16 0.00
977 32 0.00
979 2 0.00
980 58 0.01
981 98 0.01
982 618 0.08
983 125 0.02
984 28 0.00
985 51 0.01
986 245 0.03
987 220 0.03
988 768 0.09
989 873 0.11
990 1947 0.24
991 584 0.07
992 1146 0.14
993 496 0.06
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.34
Consensus pattern (992 bp):
GCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGACATGTTTAGACG
TGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAAGA
TGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTTTC
CATTAGTGTTCCTTCGAAAGATTGAATTTAAGTAGTTGAACACAATGTCAGATAATATTTTGGTT
TGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAACCT
TCAACTATTTTTATGAATGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCTTAT
TTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGATTA
CTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATA
AATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGGGT
CAATTGTCTGCACTTAAGTGAACTTAATTGCAATTTAGGATACTAATTTAGCACTTTTAGAACAT
TGTACAAGAAGATTGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGGG
CTGTGTTTGGTGGTCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGG
GGCAAAGAGTTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGATTTAACAC
TCAACGCATGCCAATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGA
AGATAATATTGGGTTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCGA
TTTACCCTACGAAAAAT
Found at i:85856681 original size:28 final size:28
Alignment explanation
Indices: 85856641--85856733 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
85856631 ATGTACTAGA
85856641 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
85856669 ATACCCCTATGTACGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
85856697 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
85856725 ATACCCCTA
1 ATACCCCTA
85856734 GGGTTAATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:85856880 original size:28 final size:27
Alignment explanation
Indices: 85856839--85856939 Score: 130
Period size: 28 Copynumber: 3.6 Consensus size: 27
85856829 AGGAAGCGTC
*
85856839 CTGGTGGCTTTGCCACAAATTATCTGTT
1 CTGGTGGCTCTGCCACAAA-TATCTGTT
*
85856867 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGTT
*
85856894 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCAC-AAATATCTGT-T
* *
85856923 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
85856940 TTTTCTGTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
27 23 0.36
28 27 0.42
29 14 0.22
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGTT
Found at i:85856897 original size:27 final size:28
Alignment explanation
Indices: 85856839--85856953 Score: 128
Period size: 27 Copynumber: 4.1 Consensus size: 28
85856829 AGGAAGCGTC
*
85856839 CTGGTGGCTTTGCCACAAATTATCTGT-T
1 CTGGTGGCTCTGCCACAAA-TATCTGTAT
*
85856867 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAAATATCTGTAT
*
85856894 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCAC-AAATATCTGTAT
* * * *
85856923 CTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTGTAT
85856950 CTGG
1 CTGG
85856954 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 36 0.47
28 26 0.34
29 14 0.18
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATATCTGTAT
Found at i:85856939 original size:29 final size:28
Alignment explanation
Indices: 85856839--85856939 Score: 132
Period size: 27 Copynumber: 3.6 Consensus size: 28
85856829 AGGAAGCGTC
* *
85856839 CTGGTGGCTTTGCCACAAATTATCTGTT
1 CTGGTGGCTCTGCCACAAAATATCTGTT
*
85856867 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAAATATCTGTT
*
85856894 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCACAAAATATCTGT-T
* *
85856923 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
85856940 TTTTCTGTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 24 0.38
28 24 0.38
29 15 0.24
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAAATATCTGTT
Found at i:85856947 original size:55 final size:56
Alignment explanation
Indices: 85856839--85856953 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 56
85856829 AGGAAGCGTC
** * *
85856839 CTGGTGGCTTTGCCACAAATTATCTGTTCTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCACTGCCACAAAATATCTGTTCTGGTGACTCTGCCACATATATCTGTAT
* *
85856894 CTGGTGGCACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-TCTGGTGACTCTGCCACATATATCTGTAT
85856950 CTGG
1 CTGG
85856954 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
55 30 0.58
56 22 0.42
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (56 bp):
CTGGTGGCACTGCCACAAAATATCTGTTCTGGTGACTCTGCCACATATATCTGTAT
Found at i:85863754 original size:28 final size:27
Alignment explanation
Indices: 85863714--85863775 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 27
85863704 ATGTACTAGA
*
85863714 ATACTCCTATGTATGCAAAATTACCATT
1 ATAC-CCTATGTATGCAAAATGACCATT
*
85863742 ATACCCTCATGTATGCAAAATGACCTTT
1 ATACCCT-ATGTATGCAAAATGACCATT
85863770 ATACCC
1 ATACCC
85863776 CTAGGGTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 3 0.10
28 28 0.90
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (27 bp):
ATACCCTATGTATGCAAAATGACCATT
Found at i:85863942 original size:27 final size:27
Alignment explanation
Indices: 85863884--85863973 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
85863874 AGGAAGCGTC
85863884 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
85863912 CTGGTGGCCCTGCCACATATATCTATT
1 CTGGTGGCACTGCCACAAATATCTGTT
85863939 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
85863968 CTGGTG
1 CTGGTG
85863974 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:85869570 original size:987 final size:991
Alignment explanation
Indices: 85864925--85887342 Score: 38103
Period size: 991 Copynumber: 22.7 Consensus size: 991
85864915 TGTTACAACC
*
85864925 TAAGTGAACTTAGTTGCAATTTTAAGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGAT
1 TAAGTGAACTTAGTTGCAA-TTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGAT
*
85864990 TGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGCGCTGTGTTTGGTGG
65 TGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGG
* *
85865055 TCTGGTCGGTGCAAGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGG
130 TCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGG
*
85865120 ACATTTTGCCAAAATGGATGTTGTGTCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCA
195 ACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCA
85865185 ATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCT-AAAAGTAGGAGAAGATAATATTGGG
260 ATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGG
* * *
85865249 TTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTGCGATTTACCCTATGAA
325 TTCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAA
85865314 AAATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTA
390 AAATGCTATAAAAAGCCAAATGAGGAAACACTAAACGAC-AACAAAAAAGTGGGAGAGATGTTTA
* * *
85865379 GATGTGAATAAGTGTTTGGCTACATAAGGGAAAGAAAGTCAAAGGCATTCCTTCATAGCCATCAC
454 GACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCAC
*
85865444 AAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTG
519 AAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTA
* * *
85865509 TTTCCATTAGTGTTCCTTTGAATGATTGAATTGAAGTAGTTGAACAAAACGTCAGATAATATTTT
584 TTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTT
85865574 GGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAA
649 GGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAA
85865639 ACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTC
714 ACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTC
85865704 TTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTG
779 TTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTG
**
85865769 ATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTCAAAGCTTAAAAATGAA
844 ATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAA
*
85865834 AATAAATCATTCTGTCATAGTGAATGATTAGACTTGAAAAGAGTTATAATTCTTGCCTTTTGGCT
909 AATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCT
85865899 GGGTCAATTGTCTGCACT
974 GGGTCAATTGTCTGCACT
*
85865917 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTCAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
* * *
85865982 GGATAGTGCTTAAATATTATTATTTGTTACTTTTACTTTATTGTGGTAGGGCTGTGTTTGTTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
* * * *
85866047 -TGGGTAGGTGCAGGATATGGAGAAAGAAACAAAAGAGTGAACGTTTACTGGGGCAAAGAGTTGG
131 CT-GGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGG
*
85866111 ACATTTTGCCAAAATGG-TATTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCA
195 ACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCA
* * * * * * *
85866175 ATTTCAACCCAACTTTACTTTTACCAAAAAATTATTCCTAAAAAATATGAGAAGACAATATTGGG
260 ATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGG
* * * * *
85866240 TTGTTTTAAAAAAGAATTTAAATTGAGGAGAAGAAAAACATGGGTTTTGCGATTTACCCTACGAA
325 TTCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAA
85866305 AAATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACCAAAAAAGTGGGAGAGATGTTT
390 AAATGCTATAAAAAGCCAAATGAGGAAACACTAAACGAC-AA-CAAAAAAGTGGGAGAGATGTTT
*
85866370 AGACGTGAATAAGTGTTTGGCTACGTAAGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCA
453 AGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCA
*
85866435 CAAGATGTAGTGCTACCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTT
518 CAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTT
* * *
85866500 GTTTCCATTAGTGTTCATTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTT
583 ATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTT
*
85866565 TGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGA-AACCTTTTAATG
648 TGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTA-CTTTTAATG
* *
85866629 AAACCTTCAACTATTTTTATGAATGCAGTGTATATCGAATGTACTTTACTATTTCATTTGATTGT
712 AAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGT
* *
85866694 TCTTATTTCTTAATTAGAAAGCGAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAAC
777 TCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAAC
85866759 TGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATG
842 TGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATG
*
85866824 AAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTACCTTTTGG
907 AAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGG
85866889 CTGGGTCAATTGTCTGCACT
972 CTGGGTCAATTGTCTGCACT
85866909 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
* *
85866974 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCATGTGGTAGGGTTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
*
85867039 CTGGTTGTTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
* * *
85867104 CATTTTGCCAAAATAGATGTGGTGGCAATGTCGAAAAGACTGA-TTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
* * * * * * * *
85867168 TTTCTGCCCAACATTACTTTTACCAAAAAAGACTTCCTAAAAAATAAGAGAAGACAATATTGGTT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
* * * * * **
85867233 TTTTTTAAAAAAGAATTTAAATTGAGGGGAAGAAAAACATGGGTTTTGCGATTTACCAAATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
** * *
85867298 AATGCTATAAAAAGCCAAATGACAAAACATTAAACGACGAACAAAAAAGTGGGAGAGATGTTTGG
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGAC-AACAAAAAAGTGGGAGAGATGTTTAG
* *
85867363 ACGTGAATAAGTGTTTGGCTACGTATGGCAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACA
455 ACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACA
*
85867428 AGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTGT
520 AGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTAT
* * *
85867493 TTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATATTG
585 TTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTG
85867558 GTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAA
650 GTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAA
* * *
85867623 CCTTCAACTATTTTTAGGAAAGCAGTGTATATCGAATTTACTTTACTATTTCATTTGATTGTTCT
715 CCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
*
85867688 TATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACAGTTCACATAATTATAAACTGA
780 TATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
* * *
85867753 TTACCTAAACATGTTCAGAAGAATGAGTTTATGTTTTTAAACTATTTTGAAGCTTAAAAATGAAA
845 TTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
*
85867818 ATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTTGCTG
910 ATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
85867883 GGTCAATTGTCTGCACT
975 GGTCAATTGTCTGCACT
* *
85867900 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTCAGAACAATGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
* *
85867965 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCATCTGGTAGGGCTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
* * *
85868030 CTGGTTGTTGCAGGATTTGGAAAAAGAAGCAAAGGAGTGAACGTTTACTGGGACAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
85868095 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
* * *
85868160 TTTCAGCACAACTTTACTTTTACCAAAAAAGTCTGCGTAAAAAATAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
* * * * * *
85868225 TGTTTTAAAAAAGAATTTGAATTGGGGAGAAGATAAACATGGGTTTTGCGATTTACCCTACGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
* * *
85868290 AATACTATAAAAAGCCAAATGAGGAAACATTAAACAACGAACAAAAATA-TGGGAGAGATGTTTA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGAC-AACAAAAA-AGTGGGAGAGATGTTTA
* *
85868354 GACGTGAATAAGTGTTTGGCTACGTAAGAGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCCC
454 GACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCAC
85868419 AAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTA
519 AAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTA
* * *
85868484 TTTCCATTAGTGTTGC-TTCAGAAGATTGAATTGAAGTAGTTGAACACAATGTTAGATAATATTT
584 TTTCCATTAGTGTTCCTTTGA-AAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTT
*
85868548 TGGTTTGGAATTTTATTTCCCAGCCTATTAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGA
648 TGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGA
* *
85868613 AACCTTCAACTATTTGTATGAATGCAGTGTATATCTAATTTACTTTAATATTTCATTTGATTGTT
713 AACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTT
*
85868678 CTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAATT
778 CTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACT
85868743 GATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGA
843 GATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGA
85868808 AAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGC
908 AAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGC
85868873 TGGGTCAATTGTCTGCACT
973 TGGGTCAATTGTCTGCACT
* * * *
85868892 AAAGTGAACTTATTTTCAATTCAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
*
85868957 GGATAGTGCTTAAATATTATTATTTTTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
85869022 -TGGTTGGTGCAGGA-TTGG-AAAA-AAACAAAGGAGTGAACGTTTACT-GGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
85869082 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
* * * *
85869147 TTTCAGCCCAACTTTACTTTTACCAAAAAACTCTACCTAAAAAGTAGGAGAAGATTATATTAGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
* * * ** *
85869212 TGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTTTGATTTACCCAATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
85869277 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAG
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGAC-AACAAAAAAGTGGGAGAGATGTTTAG
85869342 ACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACA
455 ACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACA
* *
85869407 AGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGTGAAAGTTGTTTCCTAAAGTTCTTTTGTTGT
520 AGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTAT
85869472 TTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTG
585 TTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTG
* *
85869537 GTTTGGAATTTTATTTCCCAGTCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTACTGAAA
650 GTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAA
85869602 CCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
715 CCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
85869667 TATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
780 TATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
**
85869732 TTACTTAAACACAATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
845 TTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
*
85869797 ATAAATCATTCTGTCATAGTGAATGATTAATCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
910 ATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
85869862 GGTCAATTGTCTGCACT
975 GGTCAATTGTCTGCACT
*
85869879 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAAAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
*
85869944 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGCTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
85870009 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
*
85870074 CATTTTGCCAAAATGGATGTTGTGGCAATATCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
* * *
85870139 TTTCAGCACAACTTTACTTTTACCAAAAAAGTCTGCGTAAAAAATAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
* * * * * *
85870204 TGTTTTAAAAAAGAATTTGAATTGGGGAGAAGATAAACATGGGTTTTGCGATTTACCCTACGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
* *
85870269 AATGCTATAAAAAGCCAAATGAGGAAACATTAAACAACGAACAAAAATA-TGGGAGAGATGTTTA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGAC-AACAAAAA-AGTGGGAGAGATGTTTA
85870333 GACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCAC
454 GACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCAC
*
85870398 AAGATGTAGTGCTGCCGCAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTA
519 AAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTA
* *
85870463 TTTCCATTAGTGTT-CTTCG-AAGATTGAATTGAAGTAGTTGAACACAATGTTAGATAATATTTT
584 TTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTT
* *
85870526 GATTTGGAATTTTATTTCCCAGCCTATAAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAA
649 GGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAA
* *
85870591 ACCTTCAACTATTTGTATGAATGCAGTGTATATCTAATTTACTTTAATATTTCATTTGATTGTTC
714 ACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTC
*
85870656 TTATTTCTTAATTAGAATGCAAATGACATTTAGACATAGAAGACTGTTCACATAATTATAAACTG
779 TTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTG
85870721 ATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAA
844 ATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAA
85870786 AATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCT
909 AATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCT
85870851 GGGTCAATTGTCTGCACT
974 GGGTCAATTGTCTGCACT
* * *
85870869 AAAGTGAACTTA-TTTCAATTCAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
85870933 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
* * *
85870998 TTGGTTGGTGCAGGAGTTGGAAAAACAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
85871063 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
* * * *
85871128 TTTCAGCCCAACTTTACTTTTACCAAAAAACTCTACCTAAAAAGTAGGAGAAGATTATATTAGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
* * * ** *
85871193 TGTTTTAAAAAAGAATTTAAATTGAGGAGAAGATAAACATGGGTTTTTTGATTTACCCAATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
85871258 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATGTTTAG
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGAC-AACAAAAAAGTGGGAGAGATGTTTAG
85871323 ACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACA
455 ACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACA
* *
85871388 AGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGTGAAAGTTGTTTCCTAAAGTTCTTTTGTTGT
520 AGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTAT
85871453 TTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTG
585 TTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTG
*
85871518 GTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTACTGAAA
650 GTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAA
85871583 CCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
715 CCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
85871648 TATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
780 TATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
85871713 TTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
845 TTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
85871778 ATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
910 ATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
85871843 GGTCAATTGTCTGCACT
975 GGTCAATTGTCTGCACT
85871860 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
85871925 GGATAGTGCTTAAATATTATTATTTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTG-TTGGTGG
66 GGATAGTGCTTAAATATTATTA-TTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGG
85871989 TCTGGTTGGTGCAGGATTTGG-AAAAGAAACAAAGGAGTGAACGTTTACT-GGGCAAAGAGTTGG
130 TCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGG
*
85872052 ACATTTTGCCAAAATGGATGTTGTGGCAATATCGGAAAGACTGAGTTAACACTCAACGCATGCCA
195 ACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCA
85872117 ATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGG
260 ATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGG
85872182 TTCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAA
325 TTCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAA
*
85872247 AAATGCTATAAAAAGCCAAATGAGGAAACACTAAACG---GCAAAAAAGTGGGAGAGATGTTTAG
390 AAATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAG
85872309 ACGTGAA-AAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACA
455 ACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACA
* *
85872373 AGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGAG-AAGTTGTTTCCTAAAGTT-TTTTGTTGT
520 AGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTAT
85872436 TTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTG
585 TTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTG
*
85872501 GTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTTATAAGGTTGGGATTACTTTTAATGAAA
650 GTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAA
85872566 CCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
715 CCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCT
85872631 TATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
780 TATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGA
85872696 TTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
845 TTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAA
85872761 ATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
910 ATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTG
85872826 GGTCAATTGTCTGCACT
975 GGTCAATTGTCTGCACT
85872843 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
85872908 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
*
85872973 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTAGGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
*
85873038 CATTTTGCCAAAATGGATGTTGTGGCAATATCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
85873103 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
85873168 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
*
85873233 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGGCAACAAAAAAGTGGGAGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
* *
85873298 CGTGAAAAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTACTTAGCCATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
* * *
85873363 GATGTAGTGCTGCCGAAGCATGCACTAGGCAA--G-AGGTTGTTTCCTAAAGTT-TTTTGTTGTT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
85873424 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
*
85873489 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAGAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
85873554 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
85873619 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
85873684 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
85873749 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
85873814 GTCAATTGTCTGCACT
976 GTCAATTGTCTGCACT
85873830 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
85873895 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
85873960 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACT-GGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
* *
85874024 CATTTTGCCAAAATGGATGTTGTGGCAATATCGGAAAGACTGAGTTAACACTCAGCGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
* *
85874089 TTCCTGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
* * *
85874154 TCTGTTAAAATAGAATTTAAATGGAGGAGAAGATAGACATGGGTTTTGCGATTTAGCCTATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
85874219 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
*
85874284 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGACATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
* *
85874349 GATGTAGGGCTGCCAAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
* * * *
85874414 TCCATTAGTGTTCATTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATATTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
*
85874479 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAGAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
* * *
85874544 CTTCAACTGTTTTTATTAATGCAGTGTGTATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
*
85874609 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTCTTCACATAATTATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
*
85874674 TACTTAAACACGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
85874739 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
85874804 GTCAATTGTCTGCACT
976 GTCAATTGTCTGCACT
85874820 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
85874885 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
*
85874950 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTTGGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
*
85875015 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAATGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
85875080 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
85875145 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
*
85875210 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGTGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
*
85875275 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGACATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
*
85875340 GATGTACTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
* * * *
85875405 TCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTGTATTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
*
85875470 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAGAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
85875535 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
85875600 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
* *
85875665 TACTTAAACATGATCAGAAGAATGAGTTTATATTTTTCAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
85875730 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
85875795 GTCAATTGTCTGCACT
976 GTCAATTGTCTGCACT
*
85875811 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTATAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
85875876 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
* *
85875941 CTGGTTGGTGCACGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTTGGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
* *
85876006 CATTTTGCCAAAATGGATGTTGTGGCAATATCGGAAAGACTGAGTTAAAACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
*
85876071 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAATTAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
85876136 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
* * *
85876201 AATGCTATAAAAAACCAAATGAGGAAACACTAAATGGCAACAAAAAAGTGGGAGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
85876266 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
* *
85876331 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGAGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
85876396 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
*
85876461 TTTGGAATTTTATTTCCCAGCCTTTGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
85876526 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
85876591 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
85876656 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
85876721 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
85876786 GTCAATTGTCTGCACT
976 GTCAATTGTCTGCACT
85876802 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
* *
85876867 GGATAGTGCTTAAATATTATTATTTGTTAC-TTTAATTTCTTGTGGTAGGGTTGTATTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
*
85876931 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTAGGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
*
85876996 CATTTTGCCAAAATGGATGTTGTGGCAATATCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
85877061 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
85877126 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
*
85877191 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGGCAACAAAAAAGTGGGAGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
*
85877256 CGTGAA-AAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTACTTAGCCATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
* * *
85877320 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGAGAAAGTTGTTTCCTAAAGTTTTTTTGTTGTT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
85877385 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
85877450 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATG-AAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
85877514 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
85877579 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
85877644 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
85877709 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
85877774 GTCAATTGTCTGCACT
976 GTCAATTGTCTGCACT
85877790 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
85877855 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
85877920 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
*
85877985 CATTTTGCCAAAATGGATGTTGTGGCAATATCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
85878050 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
85878115 TCTGTT-AAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
85878179 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
85878244 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
*
85878309 GATGTAGTGCTGCCGCAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
*
85878374 TCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATA--TTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
85878437 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATG-AAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
85878501 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
85878566 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
85878631 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
85878696 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
85878761 GTCAATTGTCTGCACT
976 GTCAATTGTCTGCACT
85878777 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
85878842 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
85878907 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACT-GGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
85878971 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
85879036 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
85879101 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
85879166 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
85879231 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
85879296 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTG-T-TT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
*
85879359 TCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAG---ATATTTTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
85879421 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATG-AAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
85879485 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
85879550 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
85879615 TACTTAAACATGATCAGAAGAATGAGTTTAT-TTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
85879679 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
85879744 GTCAATTGTCTGCACT
976 GTCAATTGTCTGCACT
85879760 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
*
85879825 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGCTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
85879890 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACT-GGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
*
85879954 CATTTTGCCAAAATGGATGTTGTGGCAATATCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
85880019 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAA-TAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
85880083 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
85880148 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACG-CAACAAAAAAGTGGGAGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
*
85880212 CGTGAA-AAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTACTTAGCCATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
* *
85880276 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGAGAAAGTTGTTTCCTAAAGTT-TTTTGTTGTT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
85880340 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
85880405 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
85880470 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
85880535 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
85880600 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
85880665 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
85880730 GTCAATTGTCTGCACT
976 GTCAATTGTCTGCACT
85880746 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
85880811 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
85880876 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACT-GGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
*
85880940 CATTTTGCCAAAATGGATGTTGTGGCAATATCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
85881005 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
85881070 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
85881135 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
*
85881200 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGACATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
* * *
85881265 GATGTACTGCTGCCGAAGCGTGCACTAGGCAACCGAAAATTGTTTCCTAAAGTTCTTTTGTTATT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
*
85881330 TCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGAT-ATA-TTTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
85881393 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATG-AAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
85881457 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
85881522 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
* *
85881587 TACTTAAACACGATCAGAAGAATGACTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
*
85881652 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTCTGGCTGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
85881717 GTCAATTGTCTGCACT
976 GTCAATTGTCTGCACT
*
85881733 TAAGTGAACTTAGTTGCTATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
* *
85881798 GGATAGTGCTTAAATATTCTTATTTGTTACTTTTAATTTCTTGTGGTAGGGTTGTGTTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
85881863 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACT-GGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
85881927 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
*
85881992 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
* * * * * *
85882057 TGTTTTAAATAAGAATTTAGATTGAGGAGAAGATAGACATGGGTTTTCCGATTTACCCAATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
85882122 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGA-AACAAAAAAGTGGGAGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
*
85882186 CGTGAATAAGT-TTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGACATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
* * *
85882250 GATGTAGTTCTGCCGAAGCGTGCACTAGGCAAGAGAAAGTTGTTTCCTAAAGTTCTTTTGTTGTT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
85882315 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
* *
85882380 TCTGGAATTTTATTTCCCAACCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
* * *
85882445 CTTCAACTGTTTTTAGGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATCGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
*
85882510 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAAATATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
85882575 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
* *
85882640 GAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCCGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
*
85882705 GTCAATTGTCTACACT
976 GTCAATTGTCTGCACT
85882721 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
85882786 GGATAGTGCTTAAATATTATTATTTGTTAC-TTTAATTTCTTGTGGTAGGG-TGT-TTTGGTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
*
85882848 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTAGGGCAAAGAGTTGGA
131 CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
*
85882913 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGCCTGAGTTAACACTCAACGCATGCCAA
196 CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
*
85882978 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCAAAAAAGTAGGAGAAGATAATATTGGGT
261 TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
*
85883043 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATATACCCTATGAAA
326 TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
*
85883108 AATGCTATAAAAAGCCAAATGAGGAAACATTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
391 AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
*
85883173 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGACATCACAA
456 CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
* *
85883238 GATGTAGTGCTGCCGAAGGGTGCACTAGGCAAGCGAATGTTGTTTCCTAAAGTTCTTTTGTTATT
521 GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
* * *
85883303 TCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATACTATATTGG
586 TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
*
85883368 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAGAC
651 TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
* * *
85883433 CTTCAACTGTTTTTATGAATGTAGTGTATATCTAATTTACTTTACTATTTCATTTGAATGTTCTT
716 CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
* * * *
85883498 ATTTCTTAATTAGAATGCAAATGATATTTATACATAGAAGACTCTCCACGTAATTATAAACTGAT
781 ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
*
85883563 TACTTAAACATGATCAGAAGAATGAGTTTATATTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
846 TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
85883628 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
911 TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
85883693 GTCAATTGTCTGCACT
976 GTCAATTGTCTGCACT
**
85883709 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTATTACATTGTACAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
* * *
85883774 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCGTGTGGTAGGGTTGTGTTTGTTGGT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
* * *
85883839 -TGGGTAGGTGCAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGG
131 CT-GGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGG
*
85883903 ACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGGCTGAGTTAACACTCAACGCATGCCA
195 ACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCA
*
85883968 ATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAATAGGAGAAGATAATATTGGG
260 ATTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGG
* * * *
85884033 TTGTTTTAAATAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCAATGAA
325 TTCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAA
* *
85884098 AAATGCTATAAAAAGCCAAATGAGGAAATACTAAACGATGAACAAAAAAGTGGGAGAGATGTTTA
390 AAATGCTATAAAAAGCCAAATGAGGAAACACTAAACGA-CAACAAAAAAGTGGGAGAGATGTTTA
85884163 GACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCAC
454 GACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCAC
* *
85884228 AAGATGTAGTGCTGCCGAAGCGTGCATTAGGCAAGCGAAAGTTGTTTCCTAAATTTCTTTTGTTA
519 AAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTA
* ** * *
85884293 CTTCCATTAGTGTTCCTTCAAAAGATTGAATTGATGTAGTTGAACACAATGTCAGATATTATTTT
584 TTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTT
85884358 GGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAA
649 GGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAA
*
85884423 ACCTTCAACTATTTTTCTGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTC
714 ACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTC
*
85884488 TTATTTCTCAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTG
779 TTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTG
* * *
85884553 ATTACTTAAACATGATCCGAAGATTGAGTTTATGTTTTTGAACTTTTTTGAAGCTTAAAAATGAA
844 ATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAA
* * * * * * *
85884618 AATAAACCATTTTATCATAGTGAATGATAATTCTTGAAAAGAGTTATAATTCATGCCTTTAGGCT
909 AATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCT
*
85884683 GGGTCAATTGTCTGTACT
974 GGGTCAATTGTCTGCACT
* * * * * *
85884701 TAAGTGAATTTAGTTGCATTTTAGGATA-TTATTGTAGCACTTTTAGAACATTGCATAAGAATAT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATT-TAGCACTTTTAGAACATTGTACAAGAAGAT
* * * *
85884765 TGGACAATGCTTAAATATTATTATTTATTACTTTTACTTTCTTGTGGTAGGGCTGTGTTTGGTGG
65 TGGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGG
* * * * *
85884830 T-TGGGTAGGTGTAGGATGTGGTAAACAA-AAA-AAAGG-GCTGAACGTTTGCTGGGGTAAAGAG
130 TCT-GGTTGGTGCAGGATTTGG-AAA-AAGAAACAAAGGAG-TGAACGTTTACTGGGGCAAAGAG
* * * * * *
85884891 TTGGACATTTTGCGAAAATGGATGCTGTGGCAACGTAGGGAAGATTGAGTTAACACTCAACGCAT
191 TTGGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCAT
* ** * ** * *
85884956 GCCAAGTTCAGCCCAACTACACTTGTACCAGAAAAA-TCTGAATAAAAAATAGGAGAAAATAATA
256 GCCAATTTCAGCCCAACTTTACTTTTACCA-AAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATA
* * * * * *
85885020 TTGAG-T-TGTTGAAAAAAGAATTTAAATTGAAGAGAAGTTA-ATAACGGGTTTTTG-GATTTGC
320 TTGGGTTCTGTT-AAAAAAGAATTTAAATTGAGGAGAAGATAGA-CATGGG-TTTTGCGATTTAC
* * * * ** * *
85885081 CCGAAGATAAAGGCTATAAAAAGCCAACCGAGGAAACACTAAATGATGAACAAAAAAGTGGGAGA
382 CCTATGAAAAATGCTATAAAAAGCCAAATGAGGAAACACTAAACGA-CAACAAAAAAGTGGGAGA
* * * * *** *
85885146 GAT-TTT-G--G-G-CTAAGGGTTTGGATATGTAAGGGAAAGAAAGTTGCAGGCAGTCCTTCTTA
446 GATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTA
* * *
85885205 GCCATCACAAGATGTTGTGCTGCCGAA--GTGTAGCT-GGACAAGCGAAAGTTGATT-CTAAAAG
511 GCCATCACAAGATGTAGTGCTGCCGAAGCGTGCA-CTAGG-CAAGCGAAAGTTGTTTCCT-AAAG
* * *
85885266 TTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGACTAAATTGAAGTAGTGGAACACAA-GTCA
573 TTCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCA
* * * *
85885330 GATATTATTTTGTTTTGGAATTTTATTTCCCAACCTATGAGTCAAATCTCATAAGGTTGAGATTA
638 GATAATATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTA
* * * * * * *
85885395 CTTTCAATGAAATCTTAAACTATTTTTATG-GTGCAGTATATATCTAATTTACATTACAATTTCA
703 CTTTTAATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCA
* * * * *
85885459 TTTGATTGTTCTTATTTCTTAATTAAAATACAAATGATCTTTAGACATAGAAGACGGTTCGCATA
768 TTTGATTGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATA
* * *
85885524 CTTATAAATTGATTACTTAAACATGATCTGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGC
833 ATTATAAACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGC
* * * * * *
85885589 TTAAAAATTAAAATAAGAT-ATTCTGTC--AGTGAATGATAATTATTGAAAAGAGTTATAACTCA
898 TTAAAAATGAAAATAA-ATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCT
* * * *
85885651 TGCCTTTAGGCTGGGTTAATTTTCTGTACT
962 TGCCTTTTGGCTGGGTCAATTGTCTGCACT
* * * * * * *
85885681 TAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACCTTTAGAACACTGCATAAGAAGATT
1 TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
* *
85885746 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTTTTGTGGTAGGGCTGTGTTTGGTGCT
66 GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTG-G
* * * * * **
85885811 TTTGGTAGGTGAAGGATATGGAGAAAGAAACAAAGGAGTGAACGTTTGTTGGGGCAAAGAGTTGG
130 TCTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGG
* * *
85885876 ACATTTTCCCAAAATGGATGTTGTGGCAATGTCGGGAAGACTGAGTTAACACCCAACGCATGCCA
195 ACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCA
* * *
85885941 GTTTCAGCCCAACTTTACTTTTACCAGAAAAA-TCTGCCTAAAAAATAGGAGATGATAATATTGG
260 ATTTCAGCCCAACTTTACTTTTACCA-AAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGG
* * * * * *
85886005 G-T-TGTTGAAAAAATAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGATTTACCTTAGG
324 GTTCTGTT-AAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATG
* * * * ** ** **
85886068 AAAAAAGATATAAAATGCC-AATAGAAGAAACACTAATTGACAAACAAAAAAGT------TTTCC
388 AAAAATGCTATAAAAAGCCAAAT-GAGGAAACACTAAACGAC-AACAAAAAAGTGGGAGAGATGT
* * * * * * ***
85886126 TTAGGCGTGAATAAGGGTTTGGCGACATAAGCGAAAGAAAGTCGAAGGGGGTCCTTCTTAGCCAT
451 TTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCAT
* * * * * *
85886191 CATAAGATGTTGTGCTGCCGAAGTGTGGACT-GTGCAAGCGAAAGCTGTTTCCCAAAGTTCTTTT
516 CACAAGATGTAGTGCTGCCGAAGCGTGCACTAG-GCAAGCGAAAGTTGTTTCCTAAAGTTCTTTT
* ** * *
85886255 GTTATTTCCATTAGTGTTCC-TTCAGAAGATTGAATTGAAGTAAATGAACACAATGCCAAATAAT
580 GTTATTTCCATTAGTGTTCCTTTGA-AAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAAT
* * * * **
85886319 ATTTTCGTTTAGAATTTTATTTCCCAGCCCATGAGCCAAATCTCATGTGGTTGGGATTAC--TT-
644 ATTTTGGTTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTA
* * * *
85886381 -T-CAA---T---C-A-----A-GGATGTAGTATATATCTAATTTAC-TT--TA---C---TG--
709 ATGAAACCTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGAT
* * * ** *
85886420 T-TTC--A--T-TTGA-T--AATGCAAATGATCTCTAGACATAGAAGACTGTTTGCATACTTATA
774 TGTTCTTATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATA
* * *
85886476 AACAGATTACTTAAACATGATCAGAAGAATAAGTTTATGTTTTCGAACTATTTTGAAGCTTAAAA
839 AACTGATTACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAA
* * * * * * *
85886541 ATGAAAATAAACCATTTTCTCATAGTGAATGATAACTCTTGAAAAGAGTTATGATTCATGCCTTT
904 ATGAAAATAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTT
* *
85886606 AGGCTGGGTCAATTGTCTGTACT
969 TGGCTGGGTCAATTGTCTGCACT
* * * * * * *
85886629 TAAGTGAACTTAGTTGC-ATATCAGGTTATTATTTTAGCACTTTTAGAAGATTGAATAAGAAGAT
1 TAAGTGAACTTAGTTGCAAT-TTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGAT
* * *
85886693 TGCATAGTGCTTGAAATATTATAATTTGTTACTTTTAATTTCTTGTGGTAGGGCTATGTTTGGTG
65 TGGATAGTGCTT-AAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTG
** * * * * *
85886758 GT-TCGGTAAGTGTAGGATGTGGAGAAAGAAACAAATGAGTGAACATTTACTGGGGCAAAGAGTT
129 GTCT-GGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTT
* * * * *
85886822 GGAGATTTTGCCAAAATAGATGTTGTGGCAATGTCAGCAAGACTGAGTTAACACTCAATGCATGC
193 GGACATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGC
* * * *
85886887 TAGTTTTAGCCCAACTTTACTTGTT-CTAGAAAAA-TCTGCCTACAAAA-TAGGAGAAGATAATA
258 CAATTTCAGCCCAACTTTACTT-TTACCA-AAAAAGTCTGCCTA-AAAAGTAGGAGAAGATAATA
* * * * * * *
85886949 TTGGGTT-GGTGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGATTTTCCTT
320 TTGGGTTCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCT
* * * *
85887013 A-GAAAAAAGGCTATAAAAAG-AAAACTGA-GAATACACTAAACGAAGAACAAAAAACTGGGAGA
385 ATG-AAAAATGCTATAAAAAGCCAAA-TGAGGAA-ACACTAAACG-ACAACAAAAAAGTGGGAGA
** * * *
85887075 GATCCTTAGGCGTGAATAAGAGTTTGGCTACGTAAGGGAAAGAAAGT-AGAAGGCAAGTCCTTCT
446 GATGTTTAGACGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCA-AAGGC-ATTCCTTCT
* * * * * ** * * * * *
85887139 TAGCCATTAGAAGATGTTGTGTTGCCAAAGTATGGACTGGGCAAGCAAAAGCTGTTTCCCAAAGT
509 TAGCCATCACAAGATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGT
** * * * ** * *
85887204 TCTTTTGTTATTTCTGTTAGAGTTCC-TTCAAAAATCAAATTGAAGTAGTTGAACATAGTGTCAG
574 TCTTTTGTTATTTCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAG
* *
85887268 ATAATATTTTGGTTTGGAATTTTATTTCCCAACAC-ATGAGCCAAATCTCATAAGGTTGGGATTA
639 ATAATATTTTGGTTTGGAATTTTATTTCCCAGC-CTATGAGTCAAATCTCATAAGGTTGGGATTA
*
85887332 CTTTCAATGAA
703 CTTTTAATGAA
85887343 GGATGCAGTA
Statistics
Matches: 20496, Mismatches: 804, Indels: 285
0.95 0.04 0.01
Matches are distributed among these distances:
945 1 0.00
946 116 0.01
947 6 0.00
948 381 0.02
949 63 0.00
950 1 0.00
952 1 0.00
954 131 0.01
955 94 0.00
956 2 0.00
957 2 0.00
958 1 0.00
959 1 0.00
960 1 0.00
963 1 0.00
965 3 0.00
966 21 0.00
971 1 0.00
972 1 0.00
975 2 0.00
976 2 0.00
977 1 0.00
978 2 0.00
979 9 0.00
980 297 0.01
981 406 0.02
982 403 0.02
983 1108 0.05
984 417 0.02
985 849 0.04
986 1238 0.06
987 3213 0.16
988 1629 0.08
989 1453 0.07
990 1731 0.08
991 3781 0.18
992 3055 0.15
993 70 0.00
994 2 0.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (991 bp):
TAAGTGAACTTAGTTGCAATTTAGGATACTAATTTAGCACTTTTAGAACATTGTACAAGAAGATT
GGATAGTGCTTAAATATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGT
CTGGTTGGTGCAGGATTTGGAAAAAGAAACAAAGGAGTGAACGTTTACTGGGGCAAAGAGTTGGA
CATTTTGCCAAAATGGATGTTGTGGCAATGTCGGAAAGACTGAGTTAACACTCAACGCATGCCAA
TTTCAGCCCAACTTTACTTTTACCAAAAAAGTCTGCCTAAAAAGTAGGAGAAGATAATATTGGGT
TCTGTTAAAAAAGAATTTAAATTGAGGAGAAGATAGACATGGGTTTTGCGATTTACCCTATGAAA
AATGCTATAAAAAGCCAAATGAGGAAACACTAAACGACAACAAAAAAGTGGGAGAGATGTTTAGA
CGTGAATAAGTGTTTGGCTACGTAAGGGAAAGAAAGTCAAAGGCATTCCTTCTTAGCCATCACAA
GATGTAGTGCTGCCGAAGCGTGCACTAGGCAAGCGAAAGTTGTTTCCTAAAGTTCTTTTGTTATT
TCCATTAGTGTTCCTTTGAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAATATTTTGG
TTTGGAATTTTATTTCCCAGCCTATGAGTCAAATCTCATAAGGTTGGGATTACTTTTAATGAAAC
CTTCAACTATTTTTATGAATGCAGTGTATATCTAATTTACTTTACTATTTCATTTGATTGTTCTT
ATTTCTTAATTAGAATGCAAATGATATTTAGACATAGAAGACTGTTCACATAATTATAAACTGAT
TACTTAAACATGATCAGAAGAATGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAA
TAAATCATTCTGTCATAGTGAATGATTAGTCTTGAAAAGAGTTATAATTCTTGCCTTTTGGCTGG
GTCAATTGTCTGCACT
Found at i:85888002 original size:748 final size:753
Alignment explanation
Indices: 85886691--85888208 Score: 2206
Period size: 748 Copynumber: 2.0 Consensus size: 753
85886681 GAATAAGAAG
*
85886691 ATTGCATAGTGCTTGAAATATTATAATTTGTTACTTTTAATTTCTTGTGGTAGGGCTATGTTTGG
1 ATTGCATAGTGCTTGAAATATTATAATTTGTTACTTCTAATTTCTTGTGGTAGGGCTATGTTTGG
* * *
85886756 TGGTTCGGTAAGTGTAGGATGTGGAGAAAGAAACAAATGAGTGAACATTTACTGGGGCAAAGAGT
66 TGGTTCGGTAAGTGCAAGATGTGGAGAAAGAAACAAAGGAGTGAACATTTACTGGGGCAAAGAGT
* * * *
85886821 TGGAGATTTTGCCAAAATAGATGTTGTGGCAATGTCAGCAAGACTGAGTTAACACTCAATGCATG
131 TGGACATTTTGCCAAAATAGATGCTGGGGCAATGTCAGCAAGACTGAGTTAACACTCAATGCAAG
* * * * *
85886886 CTAGTTTTAGCCCAACTTTACTTGTTCTAGAAAAATCTGCCTACAAAATAGGAGAAGATAATATT
196 CCAGTTTTAGCCCAACTTTACTTGTACCAGAAAAATATGCCTAAAAAATAGGAGAAGATAATATT
* *
85886951 GGGTTGGTGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGATTTTCCTTAGA
261 GGGTTGGTGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGATTTCCCTCAGA
*
85887016 AAAAAGGCTATAAAAAGAAAACTGAGAATACACTAAACGAAGAACAAAAAACTGGGAGAGATCCT
326 AAAAAGGCTATAAAAAGAAAACTGAGAAAACACTAAACGAAGAACAAAAAACTGGGAGAGATCCT
*
85887081 TAGGCGTGAATAAGAGTTTGGCTACGTAAGGGAAAGAAAGTAGAAGGCAAGTCCTTCTTAGCCAT
391 TAGGCGTGAATAAGAGTTTGGCTACGAAAGGGAAAGAAAGTAGAAGGCAAGTCCTTCTTAGCCAT
* * * *
85887146 TAGAAGATGTTGTGTTGCCAAAGTATGGACTGGGCAAGCAAAAGCTGTTTCCCAAAGTTCTTTTG
456 CAGAAGATGTTGTGCTGCCAAAGTATGGACTGGGCAAGCAAAAGCTATTTCCCAAAGTGCTTTTG
* * *
85887211 TTATTTCTGTTAGAGTTCCTTCAAAAATCAAATTGAAGTAGTTGAACATAGTGTCAGATAATATT
521 TTATTTCTATTAGAGTTCCTTCAAAAATCAAATTGAAGTAGTTGAACACAATGTCAGATAATATT
* *
85887276 TTGGTTTGGAATTTTATTTCCCAACACATGAGCCAAATCTCATAAGGTTGGGATTACTTTCAATG
586 TTGGTTTGGAATTTTATTTACCAACACATGAGCCAAACCTCATAAGGTTGGGATTACTTTCAATG
* *
85887341 -A-A-GGATGCAGTATATATCTAATTTACTTTACTGTTTCATTTGATTGTTCTTATTTCTTAATT
651 AATATGGATACAGTATATATCTAATTTACTTTACTGTTTCATTTGACTGTTCTTATTTCTTAATT
*
85887403 AAAATGAAAATGATCTCTACACATAGAAGACTGTTTGC
716 AAAATGAAAATGATCTCTACACATAGAAGACTATTTGC
* * * *
85887441 ATTGGATAGTGC-TGAAATATTATTATTTGTTACTTCTAATTTCTTGTGGTAGGGTTGTGTTTGG
1 ATTGCATAGTGCTTGAAATATTATAATTTGTTACTTCTAATTTCTTGTGGTAGGGCTATGTTTGG
* * ** *
85887505 TGGTTTGGTAGGTGCAAGATGTGGAGAAAGAAACAAAGGAGTGAATTTTTACTGGGGCTAAGAGT
66 TGGTTCGGTAAGTGCAAGATGTGGAGAAAGAAACAAAGGAGTGAACATTTACTGGGGCAAAGAGT
* * *
85887570 TGGACATTTTGCCAATATAGATGCTGGGGCAATGTTAGGAAGACTGAGTTAACACTCAATGCAAG
131 TGGACATTTTGCCAAAATAGATGCTGGGGCAATGTCAGCAAGACTGAGTTAACACTCAATGCAAG
85887635 CCAGTTTTAGCCCAACTTTACTTGTACCA-AAAAATATGCCTAAAAAATAGGAGAAGATAATATT
196 CCAGTTTTAGCCCAACTTTACTTGTACCAGAAAAATATGCCTAAAAAATAGGAGAAGATAATATT
* *
85887699 GGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGATTTACCCTCGG
261 GGGTTGGTGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGATTT-CCCTCAG
** * * * ***
85887764 AAAAAA-GCTATAAAAAGCCAATTGGGAAAACACTAAACGATGAACAAAAGGGTGGGAGAGATCC
325 AAAAAAGGCTATAAAAAGAAAACTGAGAAAACACTAAACGAAGAACAAAAAACTGGGAGAGATCC
* * * *
85887828 TTAGGCGTGAATAAGGGTTTGGCTACGAAAGGGAAAGAAAGTCGAAGG-TAGTCTTTCTTAGCCA
390 TTAGGCGTGAATAAGAGTTTGGCTACGAAAGGGAAAGAAAGTAGAAGGCAAGTCCTTCTTAGCCA
* * *
85887892 TCAGAAGATGTTGTGCTG-CAACAGTGTGGACTGGGTAAGCAAAAGCTATTTCCTAAAGTGCTTT
455 TCAGAAGATGTTGTGCTGCCAA-AGTATGGACTGGGCAAGCAAAAGCTATTTCCCAAAGTGCTTT
* * **
85887956 TGTTATTTCTATTAGTGTTCTTTCAAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAAT
519 TGTTATTTCTATTAGAGTTCCTTCAAAA-ATCAAATTGAAGTAGTTGAACACAATGTCAGATAAT
* * *
85888021 ATTTTGGTTTGGAATTTTATTTACCAGCCCCTGAGCCAAACCTCATAAGGTTGGGATTACTTTCA
583 ATTTTGGTTTGGAATTTTATTTACCAACACATGAGCCAAACCTCATAAGGTTGGGATTACTTTCA
*
85888086 ATGAAACCATAAACTATTTTTATGGATACATTATATATCTAATTTACTTTACTGTTTCATTTGAC
648 ATG---------A--A----TATGGATACAGTATATATCTAATTTACTTTACTGTTTCATTTGAC
* *
85888151 TGTTCTTATTTTTTAATTAAAATGCAAATGATCTCTACACATAGAAGACTATTTGC
698 TGTTCTTATTTCTTAATTAAAATGAAAATGATCTCTACACATAGAAGACTATTTGC
85888207 AT
1 AT
85888209 ACTTATAAAC
Statistics
Matches: 679, Mismatches: 68, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
746 3 0.00
747 92 0.14
748 278 0.41
749 199 0.29
750 11 0.02
760 1 0.00
765 1 0.00
766 94 0.14
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.32
Consensus pattern (753 bp):
ATTGCATAGTGCTTGAAATATTATAATTTGTTACTTCTAATTTCTTGTGGTAGGGCTATGTTTGG
TGGTTCGGTAAGTGCAAGATGTGGAGAAAGAAACAAAGGAGTGAACATTTACTGGGGCAAAGAGT
TGGACATTTTGCCAAAATAGATGCTGGGGCAATGTCAGCAAGACTGAGTTAACACTCAATGCAAG
CCAGTTTTAGCCCAACTTTACTTGTACCAGAAAAATATGCCTAAAAAATAGGAGAAGATAATATT
GGGTTGGTGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGATTTCCCTCAGA
AAAAAGGCTATAAAAAGAAAACTGAGAAAACACTAAACGAAGAACAAAAAACTGGGAGAGATCCT
TAGGCGTGAATAAGAGTTTGGCTACGAAAGGGAAAGAAAGTAGAAGGCAAGTCCTTCTTAGCCAT
CAGAAGATGTTGTGCTGCCAAAGTATGGACTGGGCAAGCAAAAGCTATTTCCCAAAGTGCTTTTG
TTATTTCTATTAGAGTTCCTTCAAAAATCAAATTGAAGTAGTTGAACACAATGTCAGATAATATT
TTGGTTTGGAATTTTATTTACCAACACATGAGCCAAACCTCATAAGGTTGGGATTACTTTCAATG
AATATGGATACAGTATATATCTAATTTACTTTACTGTTTCATTTGACTGTTCTTATTTCTTAATT
AAAATGAAAATGATCTCTACACATAGAAGACTATTTGC
Found at i:85889359 original size:990 final size:990
Alignment explanation
Indices: 85887440--85891036 Score: 5096
Period size: 990 Copynumber: 3.7 Consensus size: 990
85887430 AGACTGTTTG
* *
85887440 CATTGGATAGTGCTGAAATATTATTATTTGTTACT-TCTAATTTCTTGTGGTAGGGTTGTGTTTG
1 CATTGGATAGTGCTTAAATATTATTATTTGTTACTAT-TAATTTCTTGTGGTAGGGCTGTGTTTG
* * * *
85887504 GTGGTTTGGTAGGTGCAAGATGTGGAGAAAGAAACAAAGGAGTGAATTTTTACTGGGGCTAAGAG
65 GTGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAATGTTTGCTGGGGCAAAGAG
* * * * *
85887569 TTGGACATTTTGCCAATATAGATGCTGGGGCAATGTTAGGAAGACTGAGTTAACACTCAATGCAA
130 TTGGACATTTTGCCAAAATAGATGCTGTGCCAATGTTAGGAAGACTGAGTTAACACTCAACGCAT
*
85887634 GCCAGTTTTAGCCCAACTTTACTTGTACCA-AAAAATATGCCTAAAAAATAGGAGAAGATAATAT
195 GCCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAATATGCCTAAAAAATAGGAGAAGATAATAT
* * *
85887698 TGGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAACATGGGTTTTGGGATTTACCCTCG
260 TGGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAAAATGGATTTTGGGATTTACCCTAG
* * * **
85887763 GAAAAAAGCTATAAAAAGCCAATTG-GGAAAACACTAAACGATGAACAAAAGGGTGGGAGAGATC
325 GAAAAAAACTATAAAAAGCCAAATGAGG-AAACACTAAACGACGAACAAAAAAGTGGGAGAGATC
* * * *
85887827 CTTAGGCGTGAATAAGGGTTTGGCTACGAAAGGGAAAGAAAGTCGAAGGTAGTCTTTCTTAGCCA
389 CTTAGGCGTGAAAAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGGAAGTCCTTCTTAGCCA
** * * * * * *
85887892 TCAGAAGATGTTGTGCTG-CAACAGTGTGGACTGGGTAAGCAAAAGCTATTTCCTAAAGTGCTTT
454 TCACTAGATGCTGTGCTGCCGA-AGTGTGGACTGGGCAAGCGAAAGCTATTTCCCAAAGTTCTTT
* * * *
85887956 TGTTATTTCTATTAGTGTTCTTTCAAAAGATTGAATTGAAGTAGTTGAACACAATGTCAGATAAT
518 TGTTATTTCCATTAGTGTTCCTTCAAAAGATTGAATTGAAGAAGTTGAACACAATTTCAGATAAT
* * * *
85888021 ATTTTGGTTTGGAATTTTATTTACC-AGCCCCTGAGCCAAACCTCATAAGGTTGGGATTACTTTC
583 ATTTTGGTTTGGAATTTTATTT-CCTAGCCCATGAGTCAAATCTAATAAGGTTGGGATTACTTTC
* *
85888085 AATGAAACCATAAACTATTTTTATGGATACATTATATATCTAATTTACTTTACTGTTTCATTTGA
647 AATGAAACC-TAAACTATTTTTATGGATGCAATATATATCTAATTTACTTTACTGTTTCATTTGA
* * * *
85888150 CTGTTCTTATTTTTTAATTAAAATGCAAATGATCTCTACACATAGAAGACTATTTGCATACTTAT
711 TTGTTCTTATTTTTTAATTAAAATGCAAATGATCTCTAAACATAGAAGACTGTTCGCATACTTAT
*
85888215 AAACTGATTACTTAAACATGATCAGAAGATCGAGTTTAGGTTTTTGAACTATTTTGAAGCTTAAA
776 AAACTGATTACTTAAACATGATCAGAAGATCGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAA
* * *
85888280 AATGAAAATAAACCATTT-TTTCATAGTGAATGATAACTCTTGGAAAGAGTTATAATTAATGCCT
841 AATGAAAATAAACC-TTTCTGTCATAGTGAATGATAAATCTTGGAAAGAGTTATAATTCATGCCT
* *
85888344 TTAGGTTGGGTCACTTGTCTGTACTTAAGTGAACTTAGTTGCATATTAGGATATTATTTTAGTAC
905 TTAGGTTGGGTCAATTGTCTGTACTTAAGTGAACTTAGTTGCATATTAGGATATTATTTTAGCAC
85888409 TTTTAGAACATTGCATAAGAA
970 TTTTAGAACATTGCATAAGAA
*
85888430 CATTGGATAGTGCTTAAATATTATTATTTGTTACTATTAATTTCTTGTGGTAGGGTTGTGTTTGG
1 CATTGGATAGTGCTTAAATATTATTATTTGTTACTATTAATTTCTTGTGGTAGGGCTGTGTTTGG
* **
85888495 TGGTTTGGTAGGTGCAGGATGTGGAGAAAAAAATGAAGGAGTGAATGTTTGCTGGGGCAAAGAGT
66 TGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAATGTTTGCTGGGGCAAAGAGT
* * * **
85888560 TGGACATTTTTCCAAAATGGATGTTGTGCCAATGTTAGTTAGACTGAGTTAACACTCAACGCATG
131 TGGACATTTTGCCAAAATAGATGCTGTGCCAATGTTAGGAAGACTGAGTTAACACTCAACGCATG
* *
85888625 CCAGTTTCAGCCCAACTTTACTTGTACTAGAAAAATGTGCCTAAAAAATAGGAGAAGATAATATT
196 CCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAATATGCCTAAAAAATAGGAGAAGATAATATT
** ** * ** *
85888690 GGGTCATTGGGAAAAGAATTTAAATAGATGAGAAGATAATCATGGATTTTGGAATTTACCCTAAG
261 GGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAAAATGGATTTTGGGATTTACCCT-AG
* * * * *
85888755 G-AAAAAGCTATAAAAAGCCAACTGAGGAAACACTAAATGACGAACAAAAAAATGGGAGAGATCT
325 GAAAAAAACTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATCC
*
85888819 TTAGGCGTGAAAAAGGGTTTGGCTACGTAAGGGAAAGAAATTCGAAGGCAAGTCCTTCTTAGCC-
390 TTAGGCGTGAAAAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGG-AAGTCCTTCTTAGCCA
* ** * * *
85888883 TCACTAGATGTTGTGCTGTTGAAGTGTGGATTGGGCAAGCGAAAGCTGTTTCCTAAAGTTCTTTT
454 TCACTAGATGCTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAAGCTATTTCCCAAAGTTCTTTT
*
85888948 GTTATTTCCATTAGTGTTCCTTCGAAAGATTGAATTGAAGAAGTTGAACACAATTTCAGATAATA
519 GTTATTTCCATTAGTGTTCCTTCAAAAGATTGAATTGAAGAAGTTGAACACAATTTCAGATAATA
85889013 TTTTGGTTT-GAATTTTATTTCCTAGCCCATGAGTCAAATCTAATAAGGTTGGGATTACTTTCAA
584 TTTTGGTTTGGAATTTTATTTCCTAGCCCATGAGTCAAATCTAATAAGGTTGGGATTACTTTCAA
* * *
85889077 TGAAACCTTAAACTATTTTTATGGATGTAGTATATATCTAATTTACATTACTGTTTCATTTGATT
649 TGAAACC-TAAACTATTTTTATGGATGCAATATATATCTAATTTACTTTACTGTTTCATTTGATT
*
85889142 GTTCTTATTTTTTAATTAAAATGCAAATGATCTCTAGACATAGAAGACTGTTCGCATACTTATAA
713 GTTCTTATTTTTTAATTAAAATGCAAATGATCTCTAAACATAGAAGACTGTTCGCATACTTATAA
*
85889207 ACTGATTACTTAAACATGATCAGAAGATTGAGTTTATGTTTTTGAA-TGATTTTGAAGCTTAAAA
778 ACTGATTACTTAAACATGATCAGAAGATCGAGTTTATGTTTTTGAACT-ATTTTGAAGCTTAAAA
* * *
85889271 ATGAAAATAAACCTTTCTGTCATAATGAATGATAAGTCTTGGAAAGAGTTATAATTCATGTCTTT
842 ATGAAAATAAACCTTTCTGTCATAGTGAATGATAAATCTTGGAAAGAGTTATAATTCATGCCTTT
* * * * *
85889336 AGGCTGAGTTAATTGTCTGTACTTAAGTGAACTTAGTTGCATATTAAGATATTATTTTAGCGCTT
907 AGGTTGGGTCAATTGTCTGTACTTAAGTGAACTTAGTTGCATATTAGGATATTATTTTAGCACTT
85889401 TTAGAACATTGCATAAGAA
972 TTAGAACATTGCATAAGAA
* * * *
85889420 TATTGGATAGTGCTTAAATATTATAATTTATTACTATTAATTTCTTGTGGTAGGGCTATGTTTGG
1 CATTGGATAGTGCTTAAATATTATTATTTGTTACTATTAATTTCTTGTGGTAGGGCTGTGTTTGG
* *
85889485 TGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAATGAGTGAATGTTTGCTGGGGCAAGGAGT
66 TGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAATGTTTGCTGGGGCAAAGAGT
** ** * * * *
85889550 TGGACATTTTGTAAAAAT-GAATGCTGTGGAAATG-TCGGAAAGATTGAGTCAACACTCAACGTA
131 TGGACATTTTGCCAAAATAG-ATGCTGTGCCAATGTTAGG-AAGACTGAGTTAACACTCAACGCA
*
85889613 TGCCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAATTTGCCTAAAAAATAGGAGAAGATAATA
194 TGCCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAATATGCCTAAAAAATAGGAGAAGATAATA
*
85889678 TTGGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAAAATGGGTTTTGGGATTTACCCTA
259 TTGGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAAAATGGATTTTGGGATTTACCCTA
** * * *
85889743 GGAAAAAAACTATAAAAAAAACAAATGAGGAAACACTAAACGACGAATAGAAAAGTGGGGGAGAT
324 GGAAAAAAACTAT-AAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGAT
* *
85889808 CTTTATGCGTGAATAAA-GGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGGCAAGTCCTTCTTAG
388 CCTTAGGCGTGAA-AAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGG-AAGTCCTTCTTAG
* * *
85889872 CCGTCA-TAAGATGCTGTGCTGCCGAAGTGTGAACTGGGCAAGCGAAAGCTGTTTCCCAAAGTTC
451 CCATCACT-AGATGCTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAAGCTATTTCCCAAAGTTC
* * * **
85889936 TTTTGTTATTTCCATTAGTG-TCTTTCGAAAGATTGATTTGAA-ATAGTTGAACACAATACCAGA
515 TTTTGTTATTTCCATTAGTGTTCCTTCAAAAGATTGAATTGAAGA-AGTTGAACACAATTTCAGA
* * * *
85889999 TAATAATTTGGTTTGGAGTTTTATTTCCTAGCCCATGAG-CTAAATCTCATAAGGTTGGGATTAA
579 TAATATTTTGGTTTGGAATTTTATTTCCTAGCCCATGAGTC-AAATCTAATAAGGTTGGGATTAC
85890063 TTTC-----AA--T--A--A-----A-GGATGCAATATATATCTAATTTACTTTACTGTTTCATT
643 TTTCAATGAAACCTAAACTATTTTTATGGATGCAATATATATCTAATTTACTTTACTGTTTCATT
* * *
85890111 TGATTGTTCTTATTTCTTAATTAAAATGCAAATGAGCTTTAAACATAGAAGACTGTTCGCATACT
708 TGATTGTTCTTATTTTTTAATTAAAATGCAAATGATCTCTAAACATAGAAGACTGTTCGCATACT
* ** * *
85890176 TATAAACTGATTACTTAAACATGATCAGGAGAAGGAGTTTATGTTTTTGAACTATTTAGAATCTT
773 TATAAACTGATTACTTAAACATGATCAGAAGATCGAGTTTATGTTTTTGAACTATTTTGAAGCTT
* *
85890241 AAAAATGAAAATAAACCATTCTGTCATAGTGAATGATAAATCTT-GAATAGAGTTATAGTTCATG
838 AAAAATGAAAATAAACCTTTCTGTCATAGTGAATGATAAATCTTGGAA-AGAGTTATAATTCATG
* * *
85890305 CCTTTAGGTTGGGTCAATTGTCTGTACTTAAGTGAACTGAGTTACATTTTAGGATATTATTTTAG
902 CCTTTAGGTTGGGTCAATTGTCTGTACTTAAGTGAACTTAGTTGCATATTAGGATATTATTTTAG
85890370 CACTTTTAGAACATTGCATAAGAA
967 CACTTTTAGAACATTGCATAAGAA
* * * * * * *
85890394 CATTAGATAGTGCTTAAATAATATTATATGTTACTTTTAATTTCTTGTGGGAAGGCTGTGTTTTG
1 CATTGGATAGTGCTTAAATATTATTATTTGTTACTATTAATTTCTTGTGGTAGGGCTGTGTTTGG
* * *
85890459 TGCTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAATGAACGTTTGCTGGGGCAAAGAGT
66 TGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAATGTTTGCTGGGGCAAAGAGT
* *
85890524 TGGACATTTTGCCAAAATAGAAGCTGTGCCAATGTTGGGAAGACTGAGTTAACACTCAACGCATG
131 TGGACATTTTGCCAAAATAGATGCTGTGCCAATGTTAGGAAGACTGAGTTAACACTCAACGCATG
* * ***
85890589 CCAGTTGCAGCCCAACTTTACTTGTACCCGAAAAATCCACCTAAAAAATAGGAGAAGATAATATT
196 CCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAATATGCCTAAAAAATAGGAGAAGATAATATT
* *
85890654 GGGTTGTT-AAGAAAAGAATTTAAATAGAGGAGAAGATAAAAATGGATTTTGGGATTTACCTTCG
261 GGGTTGTTGAA-AAAAGAATTTAAATAGAGGAGAAGATAAAAATGGATTTTGGGATTTACCCTAG
* * *
85890718 GAAAAAAACTATAAAAAGGCAAATGAGGAAACACTAAATGACGAACAAAAAAGTGGGAGAGACCC
325 GAAAAAAACTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATCC
* * * * *
85890783 TTAGGCGTGAATAAGGGTTTGGCTGCGTAAGGGAAAGAAAGTCAAAGGTAGTTCTTCTTAGCCAT
390 TTAGGCGTGAAAAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGGAAGTCCTTCTTAGCCAT
* *
85890848 CACTAGATGCTGTGCTGCTGAAGTGTGGACTGGGCACGCGAAAGCTATTTCCCAAAGTTCTTTTG
455 CACTAGATGCTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAAGCTATTTCCCAAAGTTCTTTTG
* * *
85890913 TTA-TTCCATTTGTGTTCCTTCAAAAGATTGAATTGAAGTAGTTGAACACAATTTTAGATAATAT
520 TTATTTCCATTAGTGTTCCTTCAAAAGATTGAATTGAAGAAGTTGAACACAATTTCAGATAATAT
* * *
85890977 TTTGCTTTGGAATTTTATTT-CTCAGCTCATGA-TCCAAATCTAATAATGTTGGG-TTACTTT
585 TTTGGTTTGGAATTTTATTTCCT-AGCCCATGAGT-CAAATCTAATAAGGTTGGGATTACTTT
85891037 GTAACACCCC
Statistics
Matches: 2343, Mismatches: 233, Indels: 81
0.88 0.09 0.03
Matches are distributed among these distances:
971 18 0.01
972 160 0.07
973 93 0.04
974 584 0.25
975 6 0.00
980 1 0.00
982 1 0.00
984 1 0.00
987 2 0.00
989 12 0.01
990 858 0.37
991 465 0.20
992 142 0.06
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (990 bp):
CATTGGATAGTGCTTAAATATTATTATTTGTTACTATTAATTTCTTGTGGTAGGGCTGTGTTTGG
TGGTTTGGTAGGTGCAGGATGTGGAGAAAGAAACAAAGGAGTGAATGTTTGCTGGGGCAAAGAGT
TGGACATTTTGCCAAAATAGATGCTGTGCCAATGTTAGGAAGACTGAGTTAACACTCAACGCATG
CCAGTTTCAGCCCAACTTTACTTGTACCAGAAAAATATGCCTAAAAAATAGGAGAAGATAATATT
GGGTTGTTGAAAAAAGAATTTAAATAGAGGAGAAGATAAAAATGGATTTTGGGATTTACCCTAGG
AAAAAAACTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGAGAGATCCT
TAGGCGTGAAAAAGGGTTTGGCTACGTAAGGGAAAGAAAGTCGAAGGAAGTCCTTCTTAGCCATC
ACTAGATGCTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAAGCTATTTCCCAAAGTTCTTTTGT
TATTTCCATTAGTGTTCCTTCAAAAGATTGAATTGAAGAAGTTGAACACAATTTCAGATAATATT
TTGGTTTGGAATTTTATTTCCTAGCCCATGAGTCAAATCTAATAAGGTTGGGATTACTTTCAATG
AAACCTAAACTATTTTTATGGATGCAATATATATCTAATTTACTTTACTGTTTCATTTGATTGTT
CTTATTTTTTAATTAAAATGCAAATGATCTCTAAACATAGAAGACTGTTCGCATACTTATAAACT
GATTACTTAAACATGATCAGAAGATCGAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGA
AAATAAACCTTTCTGTCATAGTGAATGATAAATCTTGGAAAGAGTTATAATTCATGCCTTTAGGT
TGGGTCAATTGTCTGTACTTAAGTGAACTTAGTTGCATATTAGGATATTATTTTAGCACTTTTAG
AACATTGCATAAGAA
Found at i:85893973 original size:47 final size:47
Alignment explanation
Indices: 85893911--85894258 Score: 552
Period size: 47 Copynumber: 7.4 Consensus size: 47
85893901 CAGCCAAGAC
85893911 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
85893958 AGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
85894005 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
85894052 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
85894099 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATTTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
85894146 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
85894193 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
85894240 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
85894259 TCCCGAAGGG
Statistics
Matches: 278, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 278 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:85894432 original size:36 final size:37
Alignment explanation
Indices: 85894377--85894454 Score: 115
Period size: 36 Copynumber: 2.1 Consensus size: 37
85894367 CCGAGCCCTA
*
85894377 AAGACCCGATGACTACGTGTGG-GAATT-TGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
85894413 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
85894450 AAGAC
1 AAGAC
85894455 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
36 23 0.61
37 15 0.39
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:85898657 original size:15 final size:15
Alignment explanation
Indices: 85898620--85898648 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
85898610 TATTCCTATC
85898620 TAATAATAATAATTA
1 TAATAATAATAATTA
85898635 TAATAATAATAATT
1 TAATAATAATAATT
85898649 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:85898780 original size:19 final size:18
Alignment explanation
Indices: 85898743--85898786 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
85898733 ATACATACAG
85898743 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
85898760 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
85898779 TACTAATT
1 TAATAATT
85898787 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:85901467 original size:973 final size:968
Alignment explanation
Indices: 85899004--85901517 Score: 3531
Period size: 971 Copynumber: 2.6 Consensus size: 968
85898994 TTATTTTTAT
* * * * *
85899004 GGATGCAATAAATATCTCATTTACATTACTGTTTCATTTGATTGTTCTTATTTCTTAATTAAAAT
1 GGATGCAGTATATATCTAATTTACTTTACTGTTTCATTTTATTGTTCTTATTTCTTAATTAAAAT
*
85899069 GCAAATGATCTCTAGACAGAGAAGACTGTTCGCATACTTATAAACTGATTACTTAAACATGATCA
66 GCAAATGATCTCTAGACATAGAAGACTGTTCGCATACTTATAAACTGATTACTTAAACATGATCA
* * * *
85899134 CAAGATTAAGTTTATGTTTTTGAA-TGATTTTGAAGCTTAAAAATCAAAATAAACCTTTCTGTCA
131 GAAGAATAAGTTTATGTTTTTGAACT-ATTTTGAAGCTTAAAAATGAAAATAAACCATTCTGTCA
* * *
85899198 TAGTGAATGATAAGTCTTAGAAGGAGTTATAATTCATGTCTTTCA-GCTGGGTCAATTGTCTGTA
195 TAGTGAATGATAACTCTT-GAAAGAGTTATAATTCATGCCTTT-AGGCTGGGTCAATTGTCTGTA
* * * * * *
85899262 CTTAAGTGAACTTAGTTGCAATTTAGCATATTATTTTAGCACTTTTAGAATATTGCAAAAGATGT
258 CTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAAGA
* *
85899327 TTGGACAGTGCTTAAATATTATTATTTTCTACTTTTAATTTCTTGTGGCAGGGCTGTGTTTGGTG
323 TTGGATAGTGCTTAAATATTATTATTTT-TACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTG
*
85899392 GTTTGGTAGGTGCAGGATGTGGAGAAA-AAAACAAAGGAGTGAACGTTTGCTGGGGAAAGAGTTA
387 GTTTGGTAGGTGCAGGATGTGGAGAAAGAAAA-AAAGGAGTGAAAGTTTGCTGGGGAAAGAGTT-
* * * *
85899456 GAGATTTTGCCAAAATGGATGTTGTGGCAATGTTAGGAAGACTGAGTTAACACTCAACGCATGCC
450 GACATTTTTCCAAAATGGATGATGTGGCAATG-TCGGAAGACTGAGTTAACACTCAACGCATGCC
* * *
85899521 AGTTTCAGCCCAACTTTACTTGTACCCGAAAAATCCGCCTAAAAATAGGAGAAGATAATCTTTGG
514 AGTTTCAGCCCAACTTTACTTGTACCAGAAAAATCCGCCTAAAAATAGGAGAAGATAATATTGGG
* * * * *
85899586 TCGTTGAAAAAAGAATTTAAATAGCGGAGAAGATAAACATTGGTTTTTGGATTTACCCTAGAAAA
579 TCGTTGAAAAAAGAATTTAAAGAGAGGAGAAGATAAAAATGGGTTTTGGGATTTACCCTAGAAAA
* * *
85899651 AAAATCTATAAAAAGCCAACTAAGGAAAAACTAAATGACAAACAAAAAAGTTGGGGAGATCCTTA
644 AAAATCTATAAAAAGCCAAATAAGGAAAAACTAAACGACAAACAAAAAAGTGGGGGAGATCCTTA
* * * ** * *
85899716 GGCGTGACTAAGGGTTTGGCTATATAAGGGAAAGAAAGTTTAAGGCAGTTTTTCTTAGCCATCAC
709 GGCGTGAATAAGGGTTTGGCTACATAAAGGAAAGAAAGTCGAAGGCAGTCTTTCTTAGCCATCAA
* * * *
85899781 AAGATGTTGTGCTGCCGAAGTGTGGACTGGGCAAGCGAAACCTATTTCCCAAAGTTCTTTTGTTA
774 AAGATGTTGTGCTGCCGAAGTGTGAACTAGGCAAGCGAAACCTATTGCCCAAAGTTCTTTTGATA
* * * * *
85899846 TTTCCATTAGTGTTCCTTACAAATATTGAATTGAAGTAGTTGAGCACAATGTCAGATAATATTTT
839 TTTCCATTACTGTTCCTTACAAAGATTGAATTGAAATAGTTGAACACAATGTCAAATAATATTTT
* *
85899911 GGTTTGAAATTTTATTTCCAAGCCCATGAGCCAAATCTCATGATGTTGGGATTAATTTCAATGAA
904 GGTTTGAAATTTTATTTCCAAGCCCATGAGCCAAATCTCATAAAGTTGGGATTAATTTCAATGAA
* * *
85899976 GGATGCAGTATATATGTAATTTACTTTACTGTTTC-TTTTGATTTTTTTTATTTCTTAATTAAAA
1 GGATGCAGTATATATCTAATTTACTTTACTGTTTCATTTT-ATTGTTCTTATTTCTTAATTAAAA
* * * *
85900040 TGCAAATGATCTCTAGACATAGAAGACTGTTTGCACACTTATAAACTAATTACTTAAACTTGATC
65 TGCAAATGATCTCTAGACATAGAAGACTGTTCGCATACTTATAAACTGATTACTTAAACATGATC
* * * * *
85900105 AGAAGAATGAGTTCATGTTTTTGAACTATTTTCAAGCTTAAAAATG-AAATAAACGATTCTGTTA
130 AGAAGAATAAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTGTCA
* * * *
85900169 TAGTGAATGATAACTATTGAAACGAGTTGTAATTCATGCCTTTAGGCTGGGTCAACTGTCTATAC
195 TAGTGAATGATAACTCTTGAAA-GAGTTATAATTCATGCCTTTAGGCTGGGTCAATTGTCTGTAC
* *
85900234 TTAAGTGAACTTAGTTGCATATTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAATAT
259 TTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAAGAT
* * *
85900299 TGGGTAGTGCTTAAATATTATTATTTATTTCTATTAATTTCTTGTGGTAGGGCTGTGTTTGG-GA
324 TGGATAGTGCTTAAATATTATTATTT-TTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTG-
* * * * * *
85900363 GTTTGATAGGTGCAGGATGTAGAGAAAGAAACAAAGGAGTGAATGTTTGTTGGGGCAAGGAGTTG
387 GTTTGGTAGGTGCAGGATGTGGAGAAAGAAAAAAAGGAGTGAAAGTTTGCTGGGG-AAAGAGTT-
* * * * * * * *
85900428 GACA-TTTTGCAATAATGGATGCTATGGAAATGTCAGAAAGATTGAGTCAACGCTCAACGCATGC
450 GACATTTTTCCAA-AATGGATGATGTGGCAATGTC-GGAAGACTGAGTTAACACTCAACGCATGC
* *
85900492 CAGTTTCAGCCCAACTTTACTTGTACCAGAAAATTTCGCCTAAAAAATAGGAGAAGATAATATTG
513 CAGTTTCAGCCCAACTTTACTTGTACCAGAAAAATCCGCCT-AAAAATAGGAGAAGATAATATTG
* * * *
85900557 GGTTGTTGAGAAAAGAATTTAAAGAGAGGAGAAGATAAAAATGGGTTTTGGGATTTACCCTGGGA
577 GGTCGTTGAAAAAAGAATTTAAAGAGAGGAGAAGATAAAAATGGGTTTTGGGATTTACCCTAGAA
* * *
85900622 AAAAAA-CTATAAAAAGCCAAATGAGGAAACACTAAACGACGAACAAAAAAGTGGGGGAGATCCT
642 AAAAAATCTATAAAAAGCCAAATAAGGAAAAACTAAACGACAAACAAAAAAGTGGGGGAGATCCT
*
85900686 TAGGCGTGAATAATGGTTTGGCTACATAAAGGAAAGAAAGTCGAAGGCAGTCCTTT-TTAGCCAT
707 TAGGCGTGAATAAGGGTTTGGCTACATAAAGGAAAGAAAGTCGAAGGCAGT-CTTTCTTAGCCAT
* * *
85900750 CAAAAGATGTTGTGCTGCCGAATTGT-AACTAGGCAAGCGAAAGCTGTTGCCCAAAGTTCTTTTG
771 CAAAAGATGTTGTGCTGCCGAAGTGTGAACTAGGCAAGCGAAACCTATTGCCCAAAGTTCTTTTG
*
85900814 ATATTTCCATTACTGTT-CTTTCAAAAGATTGAATTGAAATAGTTGAACACAATGTCAAATAATA
836 ATATTTCCATTACTGTTCCTTAC-AAAGATTGAATTGAAATAGTTGAACACAATGTCAAATAATA
* * *
85900878 TTTTGGTTTGGAATTTTATTTCCCAGCCCATGAGCTAAATCTCATAAAGTTGGGATTAATTTCAA
900 TTTTGGTTTGAAATTTTATTTCCAAGCCCATGAGCCAAATCTCATAAAGTTGGGATTAATTTCAA
*
85900943 TGGA
965 TGAA
*
85900947 GGATGTAGTATATATCTAATTTACTTTACTGTTTCATTTTATTGTTCTTATTTCTTAATTAAAAT
1 GGATGCAGTATATATCTAATTTACTTTACTGTTTCATTTTATTGTTCTTATTTCTTAATTAAAAT
* *
85901012 GCAAATGATCTCTAGACATAGGAA-ACTGTTCACATACTTATAAGCTGATTACTTAAACATGATC
66 GCAAATGATCTCTAGACATA-GAAGACTGTTCGCATACTTATAAACTGATTACTTAAACATGATC
* *
85901076 AGAGGAATAAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAAATAAACCATTCTATC
130 AGAAGAATAAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATG-AAAATAAACCATTCTGTC
* * *
85901141 ATAGTGAATGATAACTCTTGGAAAGAGTTATACTTCATGCCTTTTGGCTGGGTCAATTATCTGTA
194 ATAGTGAATGATAACTCTT-GAAAGAGTTATAATTCATGCCTTTAGGCTGGGTCAATTGTCTGTA
* *
85901206 CTTAACTGAACTCAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAAGA
258 CTTAAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAAGA
* * ** **
85901271 TTAGATAGTTCTTAGTTATTATTATTTGTTACTTTTAATTTCTTGTGGTAGGATTGTGTTTGGTG
323 TTGGATAGTGCTTAAATATTATTATTT-TTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTG
*
85901336 GTTTGGTAGGTGTAGGATGTGGAGAAAGAAAAAAAGGAGTGAAAGTTTGCTGGGGAAAAGAGTTG
387 GTTTGGTAGGTGCAGGATGTGGAGAAAGAAAAAAAGGAGTGAAAGTTTGCTGGGG-AAAGAGTTG
* *
85901401 TACATTTTTCCAAAATGGATGATGTGGCAATGCCGGTTAGACTGAGTTAACACTCAACGCATGCC
451 -ACATTTTTCCAAAATGGATGATGTGGCAATGTCGG-AAGACTGAGTTAACACTCAACGCATGCC
* * * * *
85901466 AGTTTTAGCCCAGCTTTACTTGTACCAGAAAAATCCACGTAAAAAAAGGAGA
514 AGTTTCAGCCCAACTTTACTTGTACCAGAAAAATCCGCCTAAAAATAGGAGA
85901518 TGTAATAGTT
Statistics
Matches: 1350, Mismatches: 170, Indels: 44
0.86 0.11 0.03
Matches are distributed among these distances:
970 9 0.01
971 535 0.40
972 392 0.29
973 402 0.30
974 12 0.01
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (968 bp):
GGATGCAGTATATATCTAATTTACTTTACTGTTTCATTTTATTGTTCTTATTTCTTAATTAAAAT
GCAAATGATCTCTAGACATAGAAGACTGTTCGCATACTTATAAACTGATTACTTAAACATGATCA
GAAGAATAAGTTTATGTTTTTGAACTATTTTGAAGCTTAAAAATGAAAATAAACCATTCTGTCAT
AGTGAATGATAACTCTTGAAAGAGTTATAATTCATGCCTTTAGGCTGGGTCAATTGTCTGTACTT
AAGTGAACTTAGTTGCATTTTAGGATATTATTTTAGCACTTTTAGAACATTGCATAAGAAGATTG
GATAGTGCTTAAATATTATTATTTTTACTTTTAATTTCTTGTGGTAGGGCTGTGTTTGGTGGTTT
GGTAGGTGCAGGATGTGGAGAAAGAAAAAAAGGAGTGAAAGTTTGCTGGGGAAAGAGTTGACATT
TTTCCAAAATGGATGATGTGGCAATGTCGGAAGACTGAGTTAACACTCAACGCATGCCAGTTTCA
GCCCAACTTTACTTGTACCAGAAAAATCCGCCTAAAAATAGGAGAAGATAATATTGGGTCGTTGA
AAAAAGAATTTAAAGAGAGGAGAAGATAAAAATGGGTTTTGGGATTTACCCTAGAAAAAAAATCT
ATAAAAAGCCAAATAAGGAAAAACTAAACGACAAACAAAAAAGTGGGGGAGATCCTTAGGCGTGA
ATAAGGGTTTGGCTACATAAAGGAAAGAAAGTCGAAGGCAGTCTTTCTTAGCCATCAAAAGATGT
TGTGCTGCCGAAGTGTGAACTAGGCAAGCGAAACCTATTGCCCAAAGTTCTTTTGATATTTCCAT
TACTGTTCCTTACAAAGATTGAATTGAAATAGTTGAACACAATGTCAAATAATATTTTGGTTTGA
AATTTTATTTCCAAGCCCATGAGCCAAATCTCATAAAGTTGGGATTAATTTCAATGAA
Found at i:85902432 original size:43 final size:43
Alignment explanation
Indices: 85902275--85902433 Score: 119
Period size: 43 Copynumber: 3.7 Consensus size: 43
85902265 TATGTGTTAT
* * *
85902275 CATGTAAGACCATGTCTGAGACATTGGCATCGACT-TATGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTA
** * * * * * *
85902319 TGTGTAAGACCATGCCTGGGACATTAGAATAG-TATTTGATTT
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* * *
85902361 CGTGTAAGA-CAC-TGCTTGGGGCAATGGCATCGATATTTGATTA
1 CATGTAAGACCACGT-C-TGGGACATTGGCATCGATATTTGATTA
*
85902404 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACATTGGCAT
85902434 TGTATGAGAT
Statistics
Matches: 87, Mismatches: 22, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
41 3 0.03
42 22 0.25
43 32 0.37
44 29 0.33
45 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:85906753 original size:16 final size:16
Alignment explanation
Indices: 85906734--85906765 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
85906724 AATTGTTTTA
85906734 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
85906750 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
85906766 ACTCCATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:85907074 original size:50 final size:50
Alignment explanation
Indices: 85906965--85907259 Score: 306
Period size: 50 Copynumber: 5.9 Consensus size: 50
85906955 ACCGAAGCTC
* * * * * * *
85906965 TCTGATACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* * * * *
85907015 TCTGGTACACGTAGGAGTCTACACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
** * * *
85907065 TCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA--CAA
* * * * * *
85907117 -CAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* *
85907166 TCTGGTACACATAGTAGCCAGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* *
85907216 TCTGATACACATAGTAGCCTGCACTTAGTACTATACACGTGACT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACT
85907260 CGCAATGGAT
Statistics
Matches: 198, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
49 3 0.02
50 159 0.80
51 35 0.18
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
Found at i:85907231 original size:151 final size:151
Alignment explanation
Indices: 85906970--85907257 Score: 497
Period size: 151 Copynumber: 1.9 Consensus size: 151
85906960 AGCTCTCTGA
* *
85906970 TACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGGAGTCT
1 TACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGGAGTCC
*
85907035 ACACTTAGTACTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACA
66 ACACTTAGTACTACACACGTGACTTAACCATCTAATACACATAGTAGCCTGCACTTAGTACTACA
85907100 CACGTGATCGAAGTTAACAGG
131 CACGTGATCGAAGTTAACAGG
* *
85907121 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAG-CC
1 TACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGGAGTCC
* *
85907185 AGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTAT
66 A-CACTTAGTACTACACACGTGACTTAACCATCTAATACACATAGTAGCCTGCACTTAGTACTAC
85907250 ACACGTGA
130 ACACGTGA
85907258 CTCGCAATGG
Statistics
Matches: 129, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
150 2 0.02
151 127 0.98
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (151 bp):
TACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGGAGTCC
ACACTTAGTACTACACACGTGACTTAACCATCTAATACACATAGTAGCCTGCACTTAGTACTACA
CACGTGATCGAAGTTAACAGG
Found at i:85910842 original size:40 final size:40
Alignment explanation
Indices: 85910719--85910905 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
85910709 TTCGAATGAT
* * * *
85910719 ATCCGGGCTAAGTCCGGAAGGCATTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
85910760 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
85910800 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
85910839 ATTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
85910880 AT-CGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
85910906 ATCGAGTAGC
Statistics
Matches: 128, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
39 34 0.27
40 64 0.50
41 29 0.23
42 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:85910863 original size:79 final size:82
Alignment explanation
Indices: 85910719--85910903 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 82
85910709 TTCGAATGAT
* * *
85910719 ATCCGGGCTAAGTCCGGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAT
85910784 TTGTGCGAGTTACTA-A
66 TTGTGCGAGTTACTATA
* * * * **
85910800 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATTCGGGTTAAG-TCCCGAAGGCA
1 ATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
85910862 TTTGTGCGAGTTACTATA
65 TTTGTGCGAGTTACTATA
*
85910880 AT-CGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
85910904 TGATCGAGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 49 0.54
80 29 0.32
81 11 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (82 bp):
ATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAT
TTGTGCGAGTTACTATA
Found at i:85910927 original size:79 final size:78
Alignment explanation
Indices: 85910719--85910938 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 78
85910709 TTCGAATGAT
* * *
85910719 ATCCGGGCTAAGTCCGGAAGGCATTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCA
85910783 TTTGTGCGAGTTACTAA
62 TTTGTGCGAGTTACTAA
* * * *
85910800 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATTCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATA-TCCGGTTAAGT-CCGAAGGCAT
85910863 TTGTGCGAGTTACTATA
63 TTGTGCGAGTTACTA-A
* *
85910880 AT-CGGGCTATGTCCCGAAGGCATTTGAT-CGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
85910939 TATGTGATTC
Statistics
Matches: 117, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
78 1 0.01
79 58 0.50
80 46 0.39
81 12 0.10
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (78 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTG
TGCGAGTTACTAA
Found at i:85920062 original size:37 final size:37
Alignment explanation
Indices: 85919923--85920059 Score: 238
Period size: 37 Copynumber: 3.7 Consensus size: 37
85919913 CGAATAGTCC
* *
85919923 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
85919960 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
* *
85919997 CCACACGTAGTCATCGGGTCTTACCCGGATATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
85920034 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
85920060 GGAATATATT
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
Found at i:85920261 original size:48 final size:48
Alignment explanation
Indices: 85920203--85920540 Score: 586
Period size: 48 Copynumber: 7.0 Consensus size: 48
85920193 ATATACACAC
*
85920203 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
85920251 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
85920299 ATCTCATACATATTTAACACTAGCCATTCGGCTTTACCACATATTCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* **
85920347 ATCTCATATATATTTCACGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
**
85920395 ATCTCATACATATTTCACGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
85920443 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
85920491 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
85920539 AT
1 AT
85920541 TTATCTTGTA
Statistics
Matches: 277, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 277 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:85926368 original size:31 final size:31
Alignment explanation
Indices: 85926333--85926603 Score: 355
Period size: 31 Copynumber: 8.7 Consensus size: 31
85926323 TGTGTACAAT
* * *
85926333 GTGAAATGTGGTAGCTTTGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
85926364 GTGAAAAGTGGTAGTTTCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
85926395 ATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
85926426 GGGAAAAGTGGTAGCTTCGACTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
85926457 GTGAAAAGTGGTGGCTTCGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
85926488 GTGAAAAGTGGTGGCTTCGGCTACCTTATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
85926519 GTGAAAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
85926550 GTGAAAATTTGTAGC-TCTAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTC-GGCTACCTGATCA
* *
85926581 GTGAATAGTGATAGCTTCGGCTA
1 GTGAAAAGTGGTAGCTTCGGCTA
85926604 TCGAATGTGA
Statistics
Matches: 209, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
30 2 0.01
31 205 0.98
32 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:85926622 original size:29 final size:29
Alignment explanation
Indices: 85926581--85926644 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
85926571 TACCTGATCA
* * *
85926581 GTGAATAGTGATAGCTTCGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
*
85926610 GTGAAAAGGGATAGCTTTGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
85926639 GTGAAA
1 GTGAAA
85926645 GGTGAGGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCGGCTATCAAAT
Found at i:85926716 original size:33 final size:32
Alignment explanation
Indices: 85926640--85926735 Score: 138
Period size: 32 Copynumber: 3.0 Consensus size: 32
85926630 CTATCAAATG
**
85926640 TGAAAGGTGAGGTATACTTTGTGTATACCACA
1 TGAAAGGAAAGGTATACTTTGTGTATACCACA
* *
85926672 TGAAAGGAAAGGTATACTTTGTGTATAGCATA
1 TGAAAGGAAAGGTATACTTTGTGTATACCACA
*
85926704 TGAAAAGGAAAGGTATACTTTGTGTGTACCAC
1 TG-AAAGGAAAGGTATACTTTGTGTATACCAC
85926736 TCAGAAAGAA
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
32 30 0.54
33 26 0.46
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.30
Consensus pattern (32 bp):
TGAAAGGAAAGGTATACTTTGTGTATACCACA
Found at i:86186912 original size:27 final size:27
Alignment explanation
Indices: 86186882--86187059 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86186872 ATATTGAGTC
* * * *
86186882 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86186909 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86186936 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86186964 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86186991 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86187018 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86187045 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86187060 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86187021 original size:82 final size:81
Alignment explanation
Indices: 86186903--86187058 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86186893 TGCTATATAA
* *
86186903 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86186968 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86186985 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86187049 CACTTAGTGC
65 CACTTAGTGC
86187059 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Done.