Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 269 of 325
Found at i:86190991 original size:26 final size:26
Alignment explanation
Indices: 86190961--86191010 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
86190951 CCACTTAATC
*
86190961 GGGGAATCAGCACTTAGCAACCCCTT
1 GGGGAATCAGCACATAGCAACCCCTT
86190987 GGGGAATCAGCACATAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
86191011 CTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.14
Consensus pattern (26 bp):
GGGGAATCAGCACATAGCAACCCCTT
Found at i:86191157 original size:104 final size:102
Alignment explanation
Indices: 86190928--86191191 Score: 395
Period size: 104 Copynumber: 2.6 Consensus size: 102
86190918 AACCGTTATT
* * * *
86190928 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGAA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTGGGGGAA
** *
86190993 TCAGCACATAGCAACCCCCTTTTTATTTCAGAGATAC
66 TCAGCACATAGCAACCCCCTTTACATTTCAAAGATAC
*
86191030 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCATCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCT-GGGGG
86191094 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
64 AATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATAC
* **
86191134 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
86191192 TTATGTACAA
Statistics
Matches: 146, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
101 1 0.01
102 52 0.36
103 28 0.19
104 64 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (102 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTGGGGGAA
TCAGCACATAGCAACCCCCTTTACATTTCAAAGATAC
Found at i:86195662 original size:29 final size:30
Alignment explanation
Indices: 86195608--86195667 Score: 113
Period size: 29 Copynumber: 2.0 Consensus size: 30
86195598 AATCCGATCA
86195608 GGAAAATTTTATTTTTATTATATTTTTATG
1 GGAAAATTTTATTTTTATTATATTTTTATG
86195638 GGAAAATTTTA-TTTTATTATATTTTTATG
1 GGAAAATTTTATTTTTATTATATTTTTATG
86195667 G
1 G
86195668 TCTACGATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 19 0.63
30 11 0.37
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (30 bp):
GGAAAATTTTATTTTTATTATATTTTTATG
Found at i:86197175 original size:50 final size:49
Alignment explanation
Indices: 86197046--86197241 Score: 175
Period size: 50 Copynumber: 3.9 Consensus size: 49
86197036 TCTATTGTGA
* * * * *
86197046 GGTCGCATGTG-TAGTACTAAGTGCTGGCTACTATGCGTGCCCGATAACTT
1 GGTC-CATGTGTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
86197096 CGAT-CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCCATGTGT-TAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
86197146 AGGT-CATGTGTATAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 -GGTCCATGTGT-TAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
86197196 GGTCGCATGTG-TAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTC-CATGTGTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
86197242 GCTTTCGCTA
Statistics
Matches: 118, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
49 39 0.33
50 43 0.36
51 36 0.31
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
GGTCCATGTGTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:86200001 original size:16 final size:15
Alignment explanation
Indices: 86199963--86200001 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
86199953 CGGATTCTCG
*
86199963 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
86199978 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
86199993 TATTCTTGG
1 TA-TCTTGG
86200002 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:86202574 original size:26 final size:26
Alignment explanation
Indices: 86202495--86202575 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
86202485 TCGATCACGT
*
86202495 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACTAAGTGTAGGCTACTAC
* **
86202521 GTGTA-T-C-AAATGGTTAGG-T-CATGT
1 GTGTAGTACTAAGT-G-TAGGCTAC-TAC
86202545 GTGTAGTACTAAGTGTAGGCTACTAC
1 GTGTAGTACTAAGTGTAGGCTACTAC
86202571 GTGTA
1 GTGTA
86202576 CCGGATATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 16
0.63 0.11 0.25
Matches are distributed among these distances:
23 4 0.10
24 9 0.22
25 9 0.22
26 14 0.35
27 4 0.10
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (26 bp):
GTGTAGTACTAAGTGTAGGCTACTAC
Found at i:86202626 original size:49 final size:50
Alignment explanation
Indices: 86202435--86202627 Score: 181
Period size: 50 Copynumber: 3.9 Consensus size: 50
86202425 ATCTATTGTG
* * * * *
86202435 AGGTCGCATGTGTAGTACTAAGTGCTGGCTACTATGCGTGCCCAATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAAATAA-TT
* * * * * **
86202486 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAAATAATT
** * * **
86202536 AGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGAT-ATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAAATAATT
* * *
86202585 TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCA
86202628 GATAGCTTTC
Statistics
Matches: 114, Mismatches: 28, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
49 37 0.32
50 41 0.36
51 36 0.32
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAAATAATT
Found at i:86207041 original size:25 final size:25
Alignment explanation
Indices: 86207007--86207057 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
86206997 ATTAACCAAA
86207007 CTCATACTAAACATGCCAAAATAAG
1 CTCATACTAAACATGCCAAAATAAG
86207032 CTCATACTAAACATGCCAAAATAAG
1 CTCATACTAAACATGCCAAAATAAG
86207057 C
1 C
86207058 CATTCCTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.25, G:0.08, T:0.20
Consensus pattern (25 bp):
CTCATACTAAACATGCCAAAATAAG
Found at i:86207637 original size:29 final size:29
Alignment explanation
Indices: 86207597--86207670 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
86207587 GATCAATTAT
*
86207597 CATGGCCTGAAGCCAAATCATCCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
* *
86207626 CATGTCCCGAAGCCAAATCATTCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
86207655 CATGGCCCGAAGCCAA
1 CATGGCCCGAAGCCAA
86207671 TTTGGTATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (29 bp):
CATGGCCCGAAGCCAAATCATCCGATATG
Found at i:86208514 original size:7 final size:7
Alignment explanation
Indices: 86208502--86208534 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
86208492 ATCCGAGTAA
86208502 AAAAAAT
1 AAAAAAT
86208509 AAAAAAAT
1 -AAAAAAT
86208517 AAAAAAT
1 AAAAAAT
86208524 -AAAAAT
1 AAAAAAT
86208530 AAAAA
1 AAAAA
86208535 TATATTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:86224723 original size:42 final size:43
Alignment explanation
Indices: 86224666--86224778 Score: 106
Period size: 42 Copynumber: 2.7 Consensus size: 43
86224656 CATCGACTTA
* *
86224666 TGATTTACATGTAAGACCATGTTTGGGA-CATCGACATAG-TATT
1 TGATTT-CGTGTAAGACCATGTTTGGGATAAT-GACATAGATATT
* * * * *
86224709 TGATTTCGTGTAAGACCCTGTCTGAGATAATGGCATTGATATT
1 TGATTTCGTGTAAGACCATGTTTGGGATAATGACATAGATATT
* *
86224752 TGA-TACGTGTAAGACCAAGTTTGGGAT
1 TGATTTCGTGTAAGACCATGTTTGGGAT
86224779 GTTGGCATTG
Statistics
Matches: 56, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
42 41 0.73
43 15 0.27
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCATGTTTGGGATAATGACATAGATATT
Found at i:86228269 original size:27 final size:27
Alignment explanation
Indices: 86228232--86228371 Score: 149
Period size: 27 Copynumber: 5.2 Consensus size: 27
86228222 AGCATGCCTG
* *
86228232 CCAGA-ACAGATATTGTGACAGAGTCA
1 CCAGATACAGATATTGTGGCAGAGCCA
** *
86228258 CCAGATACAGATATTGTGATAGAGTCA
1 CCAGATACAGATATTGTGGCAGAGCCA
*
86228285 CCAGATACAAATATTGTGGCAGAGCCA
1 CCAGATACAGATATTGTGGCAGAGCCA
* * * *
86228312 CCAGAAACAAATATTTGTGGTATAGCCA
1 CCAGATACAGATA-TTGTGGCAGAGCCA
*
86228340 CCATAT-CAGATAATTGTGGCAGAGCCA
1 CCAGATACAGAT-ATTGTGGCAGAGCCA
86228367 CCAGA
1 CCAGA
86228372 ACGCTTCCTC
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.05
27 75 0.77
28 17 0.18
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (27 bp):
CCAGATACAGATATTGTGGCAGAGCCA
Found at i:86228314 original size:54 final size:55
Alignment explanation
Indices: 86228232--86228372 Score: 171
Period size: 55 Copynumber: 2.6 Consensus size: 55
86228222 AGCATGCCTG
* * * * *
86228232 CCAGA-ACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGATAGAGTCA
1 CCAGATACAGATATTGTGGCAGAGCCACCAGAAACAAATATTTGTGATAGAGCCA
* * *
86228285 CCAGATACAAATATTGTGGCAGAGCCACCAGAAACAAATATTTGTGGTATAGCCA
1 CCAGATACAGATATTGTGGCAGAGCCACCAGAAACAAATATTTGTGATAGAGCCA
*
86228340 CCATAT-CAGATAATTGTGGCAGAGCCACCAGAA
1 CCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
86228373 CGCTTCCTCC
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
53 5 0.07
54 33 0.44
55 37 0.49
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (55 bp):
CCAGATACAGATATTGTGGCAGAGCCACCAGAAACAAATATTTGTGATAGAGCCA
Found at i:86232284 original size:27 final size:27
Alignment explanation
Indices: 86232246--86232349 Score: 129
Period size: 27 Copynumber: 3.8 Consensus size: 27
86232236 GGCTGCCATA
* *
86232246 ACAGATATTGTGACAGAGTCACCAGAT
1 ACAGATATTGTGGCAGAGCCACCAGAT
* *
86232273 ACAGATATTGTGGTAGAGCCACCAGAA
1 ACAGATATTGTGGCAGAGCCACCAGAT
*
86232300 ACAGATATTTGTGGCAGAGCCACCATAT
1 ACAGATA-TTGTGGCAGAGCCACCAGAT
*
86232328 -CAGATAATTGTAGCAGAGCCAC
1 ACAGAT-ATTGTGGCAGAGCCAC
86232350 TAGAATGCTT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 49 0.73
28 18 0.27
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
ACAGATATTGTGGCAGAGCCACCAGAT
Found at i:86232332 original size:54 final size:55
Alignment explanation
Indices: 86232245--86232354 Score: 143
Period size: 55 Copynumber: 2.0 Consensus size: 55
86232235 TGGCTGCCAT
* * *
86232245 AACAGATATTGTGACAGAGTCACCAGATACAGAT-ATTGTGGTAGAGCCACCAGA
1 AACAGATATTGTGACAGAGCCACCAGATACAGATAATTGTAGCAGAGCCACCAGA
* * *
86232299 AACAGATATTTGTGGCAGAGCCACCATAT-CAGATAATTGTAGCAGAGCCACTAGA
1 AACAGATA-TTGTGACAGAGCCACCAGATACAGATAATTGTAGCAGAGCCACCAGA
86232354 A
1 A
86232355 TGCTTCCTCC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
54 13 0.27
55 35 0.73
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (55 bp):
AACAGATATTGTGACAGAGCCACCAGATACAGATAATTGTAGCAGAGCCACCAGA
Found at i:86234589 original size:42 final size:42
Alignment explanation
Indices: 86234480--86234631 Score: 130
Period size: 42 Copynumber: 3.5 Consensus size: 42
86234470 ATGCCAATGT
* * **
86234480 CATATCCCAGATATGGTCTTACATGGGATCACATA-TATCGATGTC
1 CATATCCCAGACATGGTCTTACACGAAAT--C-TAGTATCGATG-C
* * **
86234525 GATAGCCCAG-CTATGGTCTTACACGATGTCCT-GTATCGATGC
1 CATATCCCAGAC-ATGGTCTTACACGAAAT-CTAGTATCGATGC
* *
86234567 CATGTCCCAGACATGGTGTTACACGAAATCTAGTATCGATGC
1 CATATCCCAGACATGGTCTTACACGAAATCTAGTATCGATGC
*
86234609 CATATCCCAGATATGGTCTTACA
1 CATATCCCAGACATGGTCTTACA
86234632 AAAAATTGCA
Statistics
Matches: 86, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
41 2 0.02
42 52 0.60
43 10 0.12
44 1 0.01
45 21 0.24
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (42 bp):
CATATCCCAGACATGGTCTTACACGAAATCTAGTATCGATGC
Found at i:86237777 original size:28 final size:26
Alignment explanation
Indices: 86237694--86237779 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 26
86237684 AGGAAGCATC
* *
86237694 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
86237721 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
86237748 CTGGTGGGACTCTGTCACATTATCTGTT
1 CTGGT-GG-CTCTGCCACATTATCTGTT
86237776 CTGG
1 CTGG
86237780 CAGCCATGCA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
26 2 0.04
27 27 0.51
28 14 0.26
29 10 0.19
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:86245523 original size:27 final size:26
Alignment explanation
Indices: 86245493--86245597 Score: 120
Period size: 27 Copynumber: 3.9 Consensus size: 26
86245483 AGGAAGCATC
* *
86245493 CTGGTGGCTATACCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
86245520 CTGGTGACTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
86245547 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
86245575 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
86245598 ATTTTGGCAG
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.03
27 48 0.72
28 17 0.25
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:86245597 original size:54 final size:54
Alignment explanation
Indices: 86245493--86245597 Score: 158
Period size: 54 Copynumber: 1.9 Consensus size: 54
86245483 AGGAAGCATC
86245493 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
86245547 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCT
86245598 ATTTTGGCAG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 27 0.59
55 19 0.41
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:86259549 original size:24 final size:24
Alignment explanation
Indices: 86259517--86259665 Score: 163
Period size: 24 Copynumber: 5.9 Consensus size: 24
86259507 TGGCATTGTG
* *
86259517 CTAAGTGAAATAAGACCAAGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
*
86259541 CTAAGTGAAATGAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
* *
86259568 GCTAAGTGAAATAAGACCATGACAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
86259593 CTAAGTGGAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
*
86259620 GCTAAGTGAAATAATTCCATGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
86259645 CTAAGTGAAATAAGTCCATGG
1 CTAAGTGAAATAAGTCCATGG
86259666 GATGGTGCTA
Statistics
Matches: 105, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
24 58 0.55
25 4 0.04
27 4 0.04
28 39 0.37
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:86259576 original size:52 final size:52
Alignment explanation
Indices: 86259506--86259680 Score: 262
Period size: 52 Copynumber: 3.4 Consensus size: 52
86259496 TATCTAGGAT
* * *
86259506 ATGGCATTGTGCTAAGTGAAATAAGACCAAGGCATCTAAGTGAAATGAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
* *
86259558 ATGGCAATGTGCTAAGTGAAATAAGACCATGACATCTAAGTGGAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
**
86259610 ATGGCAATGTGCTAAGTGAAATAATTCCATGGCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
*
86259662 ATGG-GATGGTGCTAAGTGA
1 ATGGCAAT-GTGCTAAGTGA
86259681 GCAATTTCCC
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
51 2 0.02
52 110 0.98
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (52 bp):
ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
Found at i:86259770 original size:51 final size:51
Alignment explanation
Indices: 86259707--86259902 Score: 295
Period size: 51 Copynumber: 3.8 Consensus size: 51
86259697 ACCTTAGGAG
* * *
86259707 TAAAATAGCTTTGGACACAAGTGTGTTACTATGTGAAAGCAACTTTGTGAA
1 TAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA
* * *
86259758 TATAATAGCTTTGGACACAAGTGTGGTACTAAGTGAAGGCCACTTTATGAA
1 TAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA
*
86259809 TAAAATAGCTTTGGACACAAGTGTGGTATTATGTGAAGGCCACTTTGTGAA
1 TAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA
* *
86259860 TAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGTCCAC
1 TAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
86259903 CGTGTATTCG
Statistics
Matches: 131, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
50 1 0.01
51 130 0.99
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (51 bp):
TAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA
Found at i:86266973 original size:93 final size:93
Alignment explanation
Indices: 86266860--86267031 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
86266850 CGCCCATAAG
* *
86266860 CGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCAATAAGTGAACTCGGACTCAACTC
86266924 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
86266953 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCAATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGGACTCAACTCA
86267018 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86267032 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86267027 original size:46 final size:46
Alignment explanation
Indices: 86266854--86267028 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
86266844 GTAACCCGCC
* *
86266854 CATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
86266899 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 -CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCAT
*
86266949 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
*
86266992 CAATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 C-ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86267029 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 2 0.02
46 60 0.54
47 31 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:86271548 original size:49 final size:49
Alignment explanation
Indices: 86271384--86271572 Score: 202
Period size: 50 Copynumber: 3.8 Consensus size: 49
86271374 TGTGAGGTGG
* * * *
86271384 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTG-TGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC---AGACTGTTGGTCA
* * ** *
86271435 CGTGTGTAGTACTACGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-TGGTCA
* *
86271485 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCA
* *
86271534 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
86271573 TAGCTTCAGC
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 3 0.03
49 40 0.34
50 41 0.35
51 31 0.27
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCA
Found at i:86273923 original size:34 final size:34
Alignment explanation
Indices: 86273885--86273955 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
86273875 TGACTCCAAA
86273885 AGTTAGTGAAGTAGATGTGTCTGACTAGACTAAC
1 AGTTAGTGAAGTAGATGTGTCTGACTAGACTAAC
86273919 AGTTAGTGAAGTAGATGTGTCTGACTAGACTAAC
1 AGTTAGTGAAGTAGATGTGTCTGACTAGACTAAC
86273953 AGT
1 AGT
86273956 ACATTGGACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (34 bp):
AGTTAGTGAAGTAGATGTGTCTGACTAGACTAAC
Found at i:86293583 original size:16 final size:16
Alignment explanation
Indices: 86293558--86293590 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
86293548 CAGATATTGG
*
86293558 AGCGTGATGTTAAGGT
1 AGCGTCATGTTAAGGT
86293574 AGCGTCATGTTAAGGT
1 AGCGTCATGTTAAGGT
86293590 A
1 A
86293591 TTGAGGAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.09, G:0.33, T:0.30
Consensus pattern (16 bp):
AGCGTCATGTTAAGGT
Found at i:86305055 original size:21 final size:21
Alignment explanation
Indices: 86305031--86305076 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
86305021 GGGGTTTTAA
* *
86305031 GTTTGGAGTTTAGGGTTTGGT
1 GTTTGGAGTTCAGGGTTTAGT
*
86305052 GTTTGGAGTTCATGGTTTAGT
1 GTTTGGAGTTCAGGGTTTAGT
86305073 GTTT
1 GTTT
86305077 ATGATTTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.11, C:0.02, G:0.37, T:0.50
Consensus pattern (21 bp):
GTTTGGAGTTCAGGGTTTAGT
Found at i:86306049 original size:37 final size:36
Alignment explanation
Indices: 86305996--86306109 Score: 122
Period size: 37 Copynumber: 3.1 Consensus size: 36
86305986 AAACCGCCTT
* *
86305996 GTGCATTGCAACCCATCTCCTCTGTCGCCTTCTCCTC
1 GTGCATCGCAACCCATCTCCTCTATCGCCTTCTCC-C
* * *
86306033 GTGCATCGCAAACCATCCCCTCCATCGCCTT-TGCCCC
1 GTGCATCGCAACCCATCTCCTCTATCGCCTTCT--CCC
* *
86306070 GTGCATCGCAACCCATATCCTCTATTGCCTTCGTCCC
1 GTGCATCGCAACCCATCTCCTCTATCGCCTTC-TCCC
86306107 GTG
1 GTG
86306110 TATCTACTGC
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
36 1 0.02
37 59 0.94
38 2 0.03
39 1 0.02
ACGTcount: A:0.14, C:0.43, G:0.15, T:0.28
Consensus pattern (36 bp):
GTGCATCGCAACCCATCTCCTCTATCGCCTTCTCCC
Found at i:86307708 original size:14 final size:15
Alignment explanation
Indices: 86307686--86307722 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
86307676 TTAGTATAAT
86307686 AATTATATGAAGTAA
1 AATTATATGAAGTAA
86307701 AA-TATATGAAGTAA
1 AATTATATGAAGTAA
86307715 AATTATAT
1 AATTATAT
86307723 TGTATACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (15 bp):
AATTATATGAAGTAA
Found at i:86309327 original size:9 final size:9
Alignment explanation
Indices: 86309313--86309623 Score: 125
Period size: 9 Copynumber: 35.8 Consensus size: 9
86309303 CCAGCAACTC
86309313 ACATAATTT
1 ACATAATTT
86309322 ACATAATTT
1 ACATAATTT
86309331 ACATAA--T
1 ACATAATTT
*
86309338 ACATAACTT
1 ACATAATTT
86309347 ACATAA--T
1 ACATAATTT
* *
86309354 ATA-AAGTT
1 ACATAATTT
86309362 -CA-AATTT
1 ACATAATTT
*
86309369 -CATAACTT
1 ACATAATTT
86309377 ACATAATTT
1 ACATAATTT
*
86309386 ACATAACTT
1 ACATAATTT
86309395 ACATAA--T
1 ACATAATTT
*
86309402 ACATAACTT
1 ACATAATTT
86309411 ACATAA--T
1 ACATAATTT
* *
86309418 ACATTACTT
1 ACATAATTT
86309427 ACATAATTT
1 ACATAATTT
*
86309436 AAAGATCAAATTT
1 --ACAT--AATTT
*
86309449 -CATAACTT
1 ACATAATTT
86309457 ACATAA--T
1 ACATAATTT
*
86309464 ACATAACTT
1 ACATAATTT
86309473 ACATAATTT
1 ACATAATTT
86309482 AAGACCA-AATTT
1 ---A-CATAATTT
86309494 -CATAAGTTT
1 ACATAA-TTT
86309503 -CATAATTT
1 ACATAATTT
*
86309511 ACATAACTT
1 ACATAATTT
86309520 ACATAATAATT
1 ACATAAT--TT
* *
86309531 -TA-AAGTT
1 ACATAATTT
86309538 -CA-AATTT
1 ACATAATTT
*
86309545 -CATAACTT
1 ACATAATTT
86309553 ACATAA--T
1 ACATAATTT
*
86309560 ACATAACTT
1 ACATAATTT
86309569 ACATAATTT
1 ACATAATTT
*
86309578 AAAGATCAAATTT
1 --ACAT--AATTT
* *
86309591 -CATTAGTT
1 ACATAATTT
86309599 ACATAATTT
1 ACATAATTT
*
86309608 ACATAACTT
1 ACATAATTT
86309617 ACATAAT
1 ACATAAT
86309624 AATTTAAAGA
Statistics
Matches: 238, Mismatches: 29, Indels: 70
0.71 0.09 0.21
Matches are distributed among these distances:
6 2 0.01
7 55 0.23
8 21 0.09
9 129 0.54
10 5 0.02
11 8 0.03
12 6 0.03
13 12 0.05
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (9 bp):
ACATAATTT
Found at i:86309342 original size:16 final size:16
Alignment explanation
Indices: 86309321--86309730 Score: 171
Period size: 16 Copynumber: 25.7 Consensus size: 16
86309311 TCACATAATT
*
86309321 TACATAATTTACATAA
1 TACATAACTTACATAA
86309337 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
86309353 TATA-AAGTT-CA-AA
1 TACATAACTTACATAA
*
86309366 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
86309383 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
86309401 TACATAACTTACATAA
1 TACATAACTTACATAA
*
86309417 TACATTACTTACATAA
1 TACATAACTTACATAA
** **
86309433 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
*
86309446 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
86309463 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
86309479 T--TTAA--GACCA-AA
1 TACATAACTTA-CATAA
* * *
86309491 TTTCATAAGTTTCATAA
1 -TACATAACTTACATAA
86309508 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
*
86309526 TA-ATTTAAAGTT-CA-AA
1 TACA--T-AACTTACATAA
*
86309542 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
86309559 TACATAACTTACATAA
1 TACATAACTTACATAA
** **
86309575 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
* * *
86309588 TTTCATTAGTTACATAA
1 -TACATAACTTACATAA
86309605 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
**
86309623 TA-ATTTAA-AGATCA-AA
1 TACA--TAACTTA-CATAA
* *
86309639 TTTCATACCTTACATAA
1 -TACATAACTTACATAA
86309656 TACATAACTTACATAA
1 TACATAACTTACATAA
** ** *
86309672 TTTA-AAGAT-CAAAA
1 TACATAACTTACATAA
*
86309686 TTCATAACTTACATAA
1 TACATAACTTACATAA
86309702 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
86309720 TACATAACTTA
1 TACATAACTTA
86309731 ATTATACTTA
Statistics
Matches: 297, Mismatches: 57, Indels: 80
0.68 0.13 0.18
Matches are distributed among these distances:
12 3 0.01
13 9 0.03
14 24 0.08
15 34 0.11
16 139 0.47
17 23 0.08
18 65 0.22
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.36
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:86309462 original size:46 final size:46
Alignment explanation
Indices: 86309403--86309720 Score: 440
Period size: 46 Copynumber: 6.7 Consensus size: 46
86309393 TTACATAATA
*
86309403 CATAACTTACATAATACATTACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
*
86309449 CATAACTTACATAATACATAACTTACATAATTT-AAGACCAAATTT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
* * *
86309494 CATAAGTTTCATAATTTACATAACTTACATAATAATTTAAAGTTCAAATTT
1 CATAACTTACATAA--TACATAACTTAC---ATAATTTAAAGATCAAATTT
86309545 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
* *
86309591 CATTAGTTACATAATTTACATAACTTACATAATAATTTAAAGATCAAATTT
1 CATAACTTACATAA--TACATAACTTAC---ATAATTTAAAGATCAAATTT
* *
86309642 CATACCTTACATAATACATAACTTACATAATTTAAAGATCAAAATT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
86309688 CATAACTTACATAATTTACATAACTTACATAAT
1 CATAACTTACATAA--TACATAACTTACATAAT
86309721 ACATAACTTA
Statistics
Matches: 243, Mismatches: 16, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
45 23 0.09
46 95 0.39
47 12 0.05
48 29 0.12
49 24 0.10
50 7 0.03
51 53 0.22
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (46 bp):
CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
Found at i:86309632 original size:97 final size:97
Alignment explanation
Indices: 86309429--86309721 Score: 516
Period size: 97 Copynumber: 3.0 Consensus size: 97
86309419 CATTACTTAC
*
86309429 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTT-AAGACCAAATT
1 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATT
*
86309493 TCATAAGTTTCATAATTTACATAACTTACATA
66 TCATAAGTTACATAATTTACATAACTTACATA
*
86309525 ATAATTTAAAGTTCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATT
1 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATT
*
86309590 TCATTAGTTACATAATTTACATAACTTACATA
66 TCATAAGTTACATAATTTACATAACTTACATA
* *
86309622 ATAATTTAAAGATCAAATTTCATACCTTACATAATACATAACTTACATAATTTAAAGATCAAAAT
1 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATT
*
86309687 TCATAACTTACATAATTTACATAACTTACATA
66 TCATAAGTTACATAATTTACATAACTTACATA
86309719 ATA
1 ATA
86309722 CATAACTTAA
Statistics
Matches: 187, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
96 52 0.28
97 135 0.72
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (97 bp):
ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATT
TCATAAGTTACATAATTTACATAACTTACATA
Found at i:86309706 original size:9 final size:9
Alignment explanation
Indices: 86309688--86309730 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
86309678 GATCAAAATT
86309688 CATAACTTA
1 CATAACTTA
*
86309697 CATAATTTA
1 CATAACTTA
86309706 CATAACTTA
1 CATAACTTA
86309715 CATAA--TA
1 CATAACTTA
86309722 CATAACTTA
1 CATAACTTA
86309731 ATTATACTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 7 0.23
9 23 0.77
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:86312805 original size:40 final size:40
Alignment explanation
Indices: 86312735--86312954 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
86312725 TTATTCGATG
86312735 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
86312774 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
86312814 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
86312854 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTA-TTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
86312893 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
86312933 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86312955 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
39 64 0.38
40 103 0.61
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:86320344 original size:40 final size:40
Alignment explanation
Indices: 86320299--86320374 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
86320289 GGACATAGCT
*
86320299 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
86320339 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
86320375 CATCTGAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:86323883 original size:39 final size:39
Alignment explanation
Indices: 86323782--86323961 Score: 256
Period size: 40 Copynumber: 4.6 Consensus size: 39
86323772 TATTCGAATG
*
86323782 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
86323822 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATC-CGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
86323862 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
86323901 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
86323941 ATATCCGGCTAAAT-CCGAAGG
1 ATATCCGGCTAAGTCCCGAAGG
86323962 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
38 7 0.05
39 44 0.34
40 75 0.59
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (39 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:86323920 original size:79 final size:79
Alignment explanation
Indices: 86323782--86323961 Score: 292
Period size: 79 Copynumber: 2.3 Consensus size: 79
86323772 TATTCGAATG
* *
86323782 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCTGGGCTAAGTCCCGAAGGCA
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
*
86323847 TTTGTGCTAG-TGACT
65 TTTGTGCGAGTTG-CT
86323862 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCAT
86323927 TTGTGCGAGTTGCT
66 TTGTGCGAGTTGCT
*
86323941 ATATCCGGCTAAAT-CCGAAGG
1 ATATCCGGCTAAGTCCCGAAGG
86323962 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
78 7 0.07
79 80 0.84
80 8 0.08
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (79 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGCT
Found at i:86329885 original size:40 final size:40
Alignment explanation
Indices: 86329838--86330011 Score: 271
Period size: 40 Copynumber: 4.4 Consensus size: 40
86329828 TGATATCCTT
*
86329838 GCTAAGTCCCGAAGGAATTTGTGCTATTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGG
*
86329878 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGG
*
86329918 GCTAAGTCCCGAAGGCTTTTGTGCTATTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGG
* *
86329958 GCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCTA-TTGACTATATCCGG
*
86329997 GCTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
86330012 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.11
40 107 0.86
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGG
Found at i:86334317 original size:36 final size:36
Alignment explanation
Indices: 86334277--86334345 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
86334267 GATTTATAAT
86334277 ACTTCGGTCTAAGTTTTATTTATATTTACATTCTAA
1 ACTTCGGTCTAAGTTTTATTTATATTTACATTCTAA
86334313 ACTTCGGTCTAAGTTTTATTTATATTTACATTC
1 ACTTCGGTCTAAGTTTTATTTATATTTACATTC
86334346 AAGAAGGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.51
Consensus pattern (36 bp):
ACTTCGGTCTAAGTTTTATTTATATTTACATTCTAA
Found at i:86338025 original size:28 final size:28
Alignment explanation
Indices: 86337983--86338096 Score: 122
Period size: 29 Copynumber: 4.0 Consensus size: 28
86337973 TACCTGTATC
* *
86337983 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
86338011 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* * *
86338040 TGGCCCATTATGCACAAATCACATTTATA
1 TGGCCCATTAGGC-CCAATCACATTCATA
* *
86338069 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
86338097 ATCATGCTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
28 27 0.38
29 42 0.59
30 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:86338080 original size:58 final size:57
Alignment explanation
Indices: 86337974--86338084 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
86337964 AAATTCACAT
* * *
86337974 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
86338031 ACCTGTATATGGCCCATTATGCACAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGC-CAAATCACATTCATATGGCCCATTAGGCCCA
86338085 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 20 0.43
58 27 0.57
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:86338376 original size:24 final size:24
Alignment explanation
Indices: 86338316--86338382 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
86338306 ACTTTAAGCT
* *
86338316 TTTCGGCATTTCAACTTTTCGGTA
1 TTTCGGCATTTCGACTTTTCAGTA
86338340 TTTCGGCATTTCGACTTTTCAGTA
1 TTTCGGCATTTCGACTTTTCAGTA
*
86338364 TTTCGGCATTTCGGCTTTT
1 TTTCGGCATTTCGACTTTT
86338383 ACCAATTCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.13, C:0.21, G:0.18, T:0.48
Consensus pattern (24 bp):
TTTCGGCATTTCGACTTTTCAGTA
Found at i:86338378 original size:8 final size:8
Alignment explanation
Indices: 86338316--86338378 Score: 54
Period size: 8 Copynumber: 7.9 Consensus size: 8
86338306 ACTTTAAGCT
86338316 TTTCGGCA
1 TTTCGGCA
** *
86338324 TTTCAACT
1 TTTCGGCA
*
86338332 TTTCGGTA
1 TTTCGGCA
86338340 TTTCGGCA
1 TTTCGGCA
* *
86338348 TTTCGACT
1 TTTCGGCA
* *
86338356 TTTCAGTA
1 TTTCGGCA
86338364 TTTCGGCA
1 TTTCGGCA
86338372 TTTCGGC
1 TTTCGGC
86338379 TTTTACCAAT
Statistics
Matches: 39, Mismatches: 16, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
8 39 1.00
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.44
Consensus pattern (8 bp):
TTTCGGCA
Found at i:86364805 original size:39 final size:40
Alignment explanation
Indices: 86364728--86364874 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
86364718 TAGCTCCTCG
* * *
86364728 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
86364768 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
86364807 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
86364847 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
86364875 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:86364885 original size:80 final size:80
Alignment explanation
Indices: 86364774--86364954 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
86364764 CTCATTCAAT
* * *
86364774 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
86364837 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
86364853 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
86364917 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
86364934 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
86364955 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:86364914 original size:40 final size:40
Alignment explanation
Indices: 86364771--86364954 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
86364761 TAACTCATTC
* *
86364771 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
86364811 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
86364851 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
86364891 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
86364932 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
86364955 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:86374698 original size:12 final size:12
Alignment explanation
Indices: 86374662--86374710 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
86374652 CCTAGCATTT
86374662 TTTATTCA-TAA
1 TTTATTCATTAA
* *
86374673 TTGATTTTATTAA
1 TTTA-TTCATTAA
86374686 TTTATTCATTAA
1 TTTATTCATTAA
*
86374698 TCTATTCATTAA
1 TTTATTCATTAA
86374710 T
1 T
86374711 CATTTTCATC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 3 0.10
12 22 0.71
13 6 0.19
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.57
Consensus pattern (12 bp):
TTTATTCATTAA
Found at i:86380786 original size:43 final size:42
Alignment explanation
Indices: 86380717--86380831 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 42
86380707 AATTCCATAT
* **
86380717 CCCATATATGGTCTTACATGTCATCTCATATCGATGTCAATAG
1 CCCAGATATGGTCTTACATGAAATCTCATATCGATG-CAATAG
* * * *
86380760 CCCAGCTATGGTCTTACAGGAAATCTCATATCGATGCCATAT
1 CCCAGATATGGTCTTACATGAAATCTCATATCGATGCAATAG
*
86380802 CCCAGATATGGTCTTACATGAAGTCTCATA
1 CCCAGATATGGTCTTACATGAAATCTCATA
86380832 CTGATGACAT
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 31 0.50
43 31 0.50
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
CCCAGATATGGTCTTACATGAAATCTCATATCGATGCAATAG
Found at i:86380819 original size:42 final size:42
Alignment explanation
Indices: 86380711--86380872 Score: 173
Period size: 43 Copynumber: 3.8 Consensus size: 42
86380701 CATAACAATT
* **
86380711 CCATATCCCATATATGGTCTTACATGTCATCTCATATCGATG
1 CCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATG
* * * *
86380753 TCAATAGCCCAGCTATGGTCTTACAGGAAATCTCATATCGATG
1 -CCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATG
*
86380796 CCATATCCCAGATATGGTCTTACATGAAGTCTCATA-CTGATG
1 CCATATCCCAGATATGGTCTTACATGAAATCTCATATC-GATG
* * * * *
86380838 ACATATCCTAGATATGGGCCTTACACGTAATCTCA
1 CCATATCCCAGATAT-GGTCTTACATGAAATCTCA
86380873 GTAACCCTAA
Statistics
Matches: 99, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
41 1 0.01
42 48 0.48
43 50 0.51
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACATGAAATCTCATATCGATG
Found at i:86380861 original size:85 final size:85
Alignment explanation
Indices: 86380711--86380872 Score: 195
Period size: 85 Copynumber: 1.9 Consensus size: 85
86380701 CATAACAATT
* * * * *
86380711 CCATATCCCATATATGGTCTTACATGTCATCTCATATCGATGTCAATAGCCCAGCTATGGTCTTA
1 CCATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGACAATAGCCCAGATATGGCCTTA
*
86380776 CAGGAAATCTCATATCGATG
66 CACGAAATCTCATATCGATG
* *
86380796 CCATATCCCAGATATGGTCTTACATG-AAGTCTCATA-CTGATGAC-ATATCCTAGATATGGGCC
1 CCATATCCCAGATATGGTCTTACATGTAA-TCTCATATC-GATGACAATAGCCCAGATAT-GGCC
*
86380858 TTACACGTAATCTCA
63 TTACACGAAATCTCA
86380873 GTAACCCTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
84 12 0.18
85 53 0.82
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (85 bp):
CCATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGACAATAGCCCAGATATGGCCTTA
CACGAAATCTCATATCGATG
Found at i:86382508 original size:20 final size:20
Alignment explanation
Indices: 86382483--86382577 Score: 118
Period size: 20 Copynumber: 4.8 Consensus size: 20
86382473 TAATAGCAAC
*
86382483 TCATCCGTATAAACAATACT
1 TCATCCGTATAAACAATAAT
86382503 TCATCCGTATAAACAATAAT
1 TCATCCGTATAAACAATAAT
* * *
86382523 TCATCCGTATAAATAGTACT
1 TCATCCGTATAAACAATAAT
* * *
86382543 TTATCCATATAAACAGTAAT
1 TCATCCGTATAAACAATAAT
*
86382563 TCATCCTTATAAACA
1 TCATCCGTATAAACA
86382578 CATAGCTTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 65 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (20 bp):
TCATCCGTATAAACAATAAT
Found at i:86382533 original size:40 final size:40
Alignment explanation
Indices: 86382483--86382577 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
86382473 TAATAGCAAC
*
86382483 TCATCCGTATAAACAATACTTCATCCGTATAAACAATAAT
1 TCATCCGTATAAACAATACTTCATCCATATAAACAATAAT
* * * *
86382523 TCATCCGTATAAATAGTACTTTATCCATATAAACAGTAAT
1 TCATCCGTATAAACAATACTTCATCCATATAAACAATAAT
*
86382563 TCATCCTTATAAACA
1 TCATCCGTATAAACA
86382578 CATAGCTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (40 bp):
TCATCCGTATAAACAATACTTCATCCATATAAACAATAAT
Found at i:86382566 original size:60 final size:58
Alignment explanation
Indices: 86382452--86382577 Score: 146
Period size: 60 Copynumber: 2.1 Consensus size: 58
86382442 CTCTCAATCA
* * * *
86382452 TATAAATAATAATTCATTCGATAATAGCAACTCATCCGTATAAACAATACTTCATCCG
1 TATAAACAATAATTCATCCGATAATAGCAACTCATCCATATAAACAATAATTCATCCG
* * * *
86382510 TATAAACAATAATTCATCCGTATAAATAG-TACTTTATCCATATAAACAGTAATTCATCCT
1 TATAAACAATAATTCATCCG-AT-AATAGCAAC-TCATCCATATAAACAATAATTCATCCG
86382570 TATAAACA
1 TATAAACA
86382578 CATAGCTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
58 18 0.32
59 4 0.07
60 35 0.61
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.33
Consensus pattern (58 bp):
TATAAACAATAATTCATCCGATAATAGCAACTCATCCATATAAACAATAATTCATCCG
Found at i:86382819 original size:24 final size:23
Alignment explanation
Indices: 86382754--86382837 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 23
86382744 GAACTGATGG
*
86382754 ACAGTAAGCTC-TATTGAGCTAAA
1 ACAGTAAGCTCTTA-AGAGCTAAA
* * *
86382777 ACGGTAAACTCTGAAGAGCTGAAA
1 ACAGTAAGCTCTTAAGAGCT-AAA
*
86382801 ACAGTAAGCTCTTACGAGCTAATA
1 ACAGTAAGCTCTTAAGAGCTAA-A
86382825 TATCAGTAAGCTC
1 -A-CAGTAAGCTC
86382838 ACACAAGCTG
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
23 16 0.33
24 21 0.44
25 1 0.02
26 10 0.21
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (23 bp):
ACAGTAAGCTCTTAAGAGCTAAA
Found at i:86388782 original size:6 final size:6
Alignment explanation
Indices: 86388771--86388872 Score: 104
Period size: 6 Copynumber: 16.8 Consensus size: 6
86388761 AACCAAAATG
*
86388771 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
86388819 AGTAA-C AGAATC AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
86388868 AGAAT
1 AGAAT
86388873 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.07
6 68 0.84
7 5 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:86388786 original size:30 final size:29
Alignment explanation
Indices: 86388750--86388872 Score: 140
Period size: 30 Copynumber: 4.1 Consensus size: 29
86388740 AAGAAACATT
* * *
86388750 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
86388780 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
86388810 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
86388840 ATCAGAATTACGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
86388871 AT
1 AT
86388873 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
29 1 0.01
30 55 0.68
31 25 0.31
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:86389276 original size:22 final size:22
Alignment explanation
Indices: 86389228--86389286 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
86389218 GTAAATACGT
*
86389228 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
86389250 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
86389272 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
86389287 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:86389453 original size:27 final size:26
Alignment explanation
Indices: 86389374--86389456 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
86389364 TCGATCGGTC
* * *
86389374 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
86389400 ATAAAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
86389427 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
86389454 AAC
1 AAC
86389457 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.14
27 42 0.86
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:86389685 original size:27 final size:27
Alignment explanation
Indices: 86389655--86389850 Score: 232
Period size: 27 Copynumber: 7.3 Consensus size: 27
86389645 GGGGCAAAAT
* *
86389655 GGTAATTTTA-CCTCACAAGGGTATCTC
1 GGTAATTCTACCCT-ACAAGGGTATTTC
*
86389682 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86389709 GGTATTTATACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86389736 GATAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86389763 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
86389790 AGTAATTCTACCATATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
86389817 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
86389844 AGTAATT
1 GGTAATT
86389851 TCACAATCAA
Statistics
Matches: 144, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 141 0.98
28 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:86389907 original size:27 final size:27
Alignment explanation
Indices: 86389871--86390128 Score: 281
Period size: 27 Copynumber: 9.6 Consensus size: 27
86389861 GGTTAAAAGG
*
86389871 TAATTCTGTAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
86389898 TAATTTTGTAAA-CTGAGGGT-AAACCA
1 TAATTCTGTAAATC-GAGGGTAAAACGA
* *
86389924 GTAATTCTGTAAATCAAGGGTAAAACGG
1 -TAATTCTGTAAATCGAGGGTAAAACGA
* ** *
86389952 TAATTTTACAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* ** *
86389979 TAATTTTACAAATCGAGGGTAAAA-TA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
86390005 GTAATTCTATAAA-CTGAGGGTAAAACGG
1 -TAATTCTGTAAATC-GAGGGTAAAACGA
*
86390033 TAATTCTGTAAATTGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
86390060 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
86390087 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
86390114 TATTTCTGTAAATCG
1 TAATTCTGTAAATCG
86390129 GGAGTACTTT
Statistics
Matches: 199, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
26 7 0.04
27 187 0.94
28 5 0.03
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGA
Found at i:86390145 original size:81 final size:81
Alignment explanation
Indices: 86389855--86390128 Score: 365
Period size: 81 Copynumber: 3.4 Consensus size: 81
86389845 GTAATTTCAC
*
86389855 AATCAAGGTTAAAA-GGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGTAAATC-GAGGGT
*
86389918 AAACCAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* ** **
86389935 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATGATAATTTTACAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
* *
86390000 AAATAGTAATTCTATA
66 AAACAGTAATTCTGTA
* * * *
86390016 AA-CTGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGT
1 AATC-AAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGT
*
86390080 AAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* *
86390097 AATCGAGGGTAAAACGGTATTTCTGTAAATCG
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCG
86390129 GGAGTACTTT
Statistics
Matches: 167, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
80 14 0.08
81 151 0.90
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:86390157 original size:81 final size:80
Alignment explanation
Indices: 86389855--86390159 Score: 323
Period size: 81 Copynumber: 3.8 Consensus size: 80
86389845 GTAATTTCAC
* * * ** *
86389855 AATCAAGGTTAAAA-GGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGTAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTATTTCTGTAAATCGAGGGTAAAATGATAATTTTACAATC-GAGGGTA
*
86389919 AACCAGTAATTCTGTA
65 AAACAGTAATTCTGTA
* **
86389935 AATCAAGGGTAAAACGGTAATTT-TACAAATCGAGGGTAAAATGATAATTTTACAAATCGAGGGT
1 AATCGAGGGTAAAACGGT-ATTTCTGTAAATCGAGGGTAAAATGATAATTTTAC-AATCGAGGGT
* *
86389999 AAAATAGTAATTCTATA
64 AAAACAGTAATTCTGTA
* * *
86390016 AA-CTGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACGATAATTCTGTA-AATCGAGGG
1 AATC-GAGGGTAAAACGGTATTTCTGTAAATCGAGGGTAAAATGATAATT-T-TACAATCGAGGG
*
86390079 TAAAACGGTAATTCTGTA
63 TAAAACAGTAATTCTGTA
*** *
86390097 AATCGAGGGTAAAACGGTATTTCTGTAAATCG-GGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 AATCGAGGGTAAAACGGTATTTCTGTAAATCGAGG-GTAAAATGATAATTTTACAA-TCGAGGG
86390160 CATTTCAGTA
Statistics
Matches: 188, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
79 2 0.01
80 22 0.12
81 154 0.82
82 8 0.04
83 2 0.01
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (80 bp):
AATCGAGGGTAAAACGGTATTTCTGTAAATCGAGGGTAAAATGATAATTTTACAATCGAGGGTAA
AACAGTAATTCTGTA
Found at i:86396459 original size:14 final size:13
Alignment explanation
Indices: 86396426--86396460 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
86396416 ATGTTTAAAA
86396426 ACTTTTATTTGTT
1 ACTTTTATTTGTT
86396439 A-TTTTATGTTGTT
1 ACTTTTAT-TTGTT
86396452 ACTTTTATT
1 ACTTTTATT
86396461 CTATTTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 6 0.30
13 8 0.40
14 6 0.30
ACGTcount: A:0.17, C:0.06, G:0.09, T:0.69
Consensus pattern (13 bp):
ACTTTTATTTGTT
Found at i:86399929 original size:40 final size:40
Alignment explanation
Indices: 86399836--86400060 Score: 215
Period size: 40 Copynumber: 5.7 Consensus size: 40
86399826 GCTCCTCGTT
* * * *
86399836 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
86399876 C-AATGCCTTCGGGACTTAACCCGGATTCAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
86399915 CGAATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
86399955 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-TTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
86399995 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
86400036 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
86400061 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 38 0.25
40 101 0.66
41 15 0.10
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:86400069 original size:41 final size:41
Alignment explanation
Indices: 86399992--86400069 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
86399982 TTTTTATCTC
* * *
86399992 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
86400033 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
86400070 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:86410673 original size:126 final size:125
Alignment explanation
Indices: 86410449--86410685 Score: 395
Period size: 126 Copynumber: 1.9 Consensus size: 125
86410439 CGTGATCACA
* * *
86410449 TCAGGAGACTCTGCCTCTTCATGAGAGCGAATAGTTTAAGTCCTTGTAGGCTCTCTGCCCTCGGA
1 TCAGGAGACTCTGCCTCTTCACGAGAGCGAATAGGTTAAGTCCTTGTAGGCGCTCTGCCCTCGGA
*
86410514 CCTCATTACAGCATCTCTTGGCGCACATCTGCTAGTAGCCCCACTTTTGGGGTTCTTTTT
66 CCTCACTACAGCATCTCTTGGCGCACATCTGCTAGTAGCCCCACTTTTGGGGTTCTTTTT
86410574 TCAGGAGACTCTGCCTCTTCACGAGTA-CGAATAGCGTTAAGTCCTTGTAGGCGCTCTGCCCTCG
1 TCAGGAGACTCTGCCTCTTCACGAG-AGCGAATAG-GTTAAGTCCTTGTAGGCGCTCTGCCCTCG
* *
86410638 GACCTTACTACAGCATCTCTTGGCGCACATCTGCTAGTCGCCCCACTT
64 GACCTCACTACAGCATCTCTTGGCGCACATCTGCTAGTAGCCCCACTT
86410686 CCAGGGTTCT
Statistics
Matches: 104, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
125 31 0.30
126 73 0.70
ACGTcount: A:0.18, C:0.30, G:0.22, T:0.30
Consensus pattern (125 bp):
TCAGGAGACTCTGCCTCTTCACGAGAGCGAATAGGTTAAGTCCTTGTAGGCGCTCTGCCCTCGGA
CCTCACTACAGCATCTCTTGGCGCACATCTGCTAGTAGCCCCACTTTTGGGGTTCTTTTT
Found at i:86418297 original size:6 final size:6
Alignment explanation
Indices: 86418286--86418317 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
86418276 ACTTCGTGTA
86418286 ATTCTG ATTCTG ATTCTG ATTCTG AATTCTG A
1 ATTCTG ATTCTG ATTCTG ATTCTG -ATTCTG A
86418318 ATAGATGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:86422954 original size:12 final size:12
Alignment explanation
Indices: 86422937--86422961 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86422927 ATGTAAGTGA
86422937 TCTTGATGATTT
1 TCTTGATGATTT
86422949 TCTTGATGATTT
1 TCTTGATGATTT
86422961 T
1 T
86422962 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:86425999 original size:32 final size:33
Alignment explanation
Indices: 86425939--86426002 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
86425929 CTATGGGCCA
86425939 TACTGTTATCTGAAAAAGGGCTAAGGCCTAGTT
1 TACTGTTATCTGAAAAAGGGCTAAGGCCTAGTT
**
86425972 TACTG-TATTCTG-AAAAGGGCTTCGGCCTAGT
1 TACTGTTA-TCTGAAAAAGGGCTAAGGCCTAGT
86426003 ACCCGCTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 19 0.68
33 9 0.32
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (33 bp):
TACTGTTATCTGAAAAAGGGCTAAGGCCTAGTT
Found at i:86426999 original size:47 final size:46
Alignment explanation
Indices: 86426848--86427201 Score: 210
Period size: 47 Copynumber: 7.5 Consensus size: 46
86426838 GGGTGTTACA
* * * * *
86426848 GTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGTGCCAGT
* * * * *
86426894 GTAAGACCATGT-TAGGGACATGGAATCAG-CAT-TCAAACGAGGGCTAGT
1 GTAAGA-CATGTCT-GGGACAT-GCATCAGCCATAT--TATGAGTGCCAGT
86426942 GTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGTGCCAGT
1 GTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGTGCCAGT
* * * * * *
86426988 GTAAGACCATGTCAGGGACATGGCATTAGCACAGA-GATGAGTGCTAGA
1 GTAAGA-CATGTCTGGGACAT-GCATCAGC-CATATTATGAGTGCCAGT
** *
86427036 GTAAGACATGTCTGGGACATGCATTGGCC-TCGA-CA-GAGATAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCAGCCAT--ATTATGAG-T-GCCAGT
* * * ** * *
86427083 GTAAGACGTGTCTGGGACACGCATC-GGC-TAAGA-GTTGTGCAAGT
1 GTAAGACATGTCTGGGACATGCATCAGCCATATTATG-AGTGCCAGT
*
86427127 GTAAGACATGTCTGGGACATGCATCAG-CATGCATATATGAGAT-CCAAT
1 GTAAGACATGTCTGGGACATGCATCAGCCAT--AT-TATGAG-TGCCAGT
86427175 GTAAGACCATGTCTGGGACATTGCATC
1 GTAAGA-CATGTCTGGGACA-TGCATC
86427202 GGCAATATAT
Statistics
Matches: 242, Mismatches: 40, Indels: 48
0.73 0.12 0.15
Matches are distributed among these distances:
44 30 0.12
45 9 0.04
46 43 0.18
47 81 0.33
48 55 0.23
49 18 0.07
50 6 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGTGCCAGT
Found at i:86427009 original size:94 final size:94
Alignment explanation
Indices: 86426847--86427195 Score: 295
Period size: 94 Copynumber: 3.7 Consensus size: 94
86426837 TGGGTGTTAC
* * * *
86426847 AGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTAGGGA
1 AGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCAGGGA
86426912 CATGGAATCAGCATTCA-A-ACGAGGGCTAG
66 CATGGAATCAGCA--CAGAGACGAGGGCTAG
* * *
86426941 TGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGTGCCAGTGTAAGACCATGTCAGGGA
1 AGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCAGGGA
* * * *
86427006 CATGGCATTAGCACAGAGATGAGTGCTAG
66 CATGGAATCAGCACAGAGACGAGGGCTAG
** * * * *
86427035 AGTAAGACATGTCTGGGACATGCATTGGCCTCGACA-GA-GATAGCCAGTGTAAGA-CGTGTCTG
1 AGTAAGACATGTCTGGGACATGCATCAG-C-C-ACATTATGAGAGCCAGTGTAAGACCATGTCAG
* * * ** * *
86427097 GGACA-CGCATCGGCTA-AGAG--TTGTGCAAG
63 GGACATGGAATCAGC-ACAGAGACGAGGGCTAG
* * * *
86427126 TGTAAGACATGTCTGGGACATGCATCAG-CATGCATATATGAGATCCAATGTAAGACCATGTCTG
1 AGTAAGACATGTCTGGGACATGCATCAGCCA--CAT-TATGAGAGCCAGTGTAAGACCATGTCAG
86427190 GGACAT
63 GGACAT
86427196 TGCATCGGCA
Statistics
Matches: 208, Mismatches: 34, Indels: 26
0.78 0.13 0.10
Matches are distributed among these distances:
87 1 0.00
88 1 0.00
89 2 0.01
91 32 0.15
92 15 0.07
93 23 0.11
94 115 0.55
95 15 0.07
96 2 0.01
97 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
AGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCAGGGA
CATGGAATCAGCACAGAGACGAGGGCTAG
Found at i:86430294 original size:28 final size:28
Alignment explanation
Indices: 86430252--86430305 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
86430242 GGAGGAAGCA
86430252 TTCTGGTGGCCATGCCACAAATATCTAT
1 TTCTGGTGGCCATGCCACAAATATCTAT
*
86430280 TTCTGGTGGCGATGCCACAAATATCT
1 TTCTGGTGGCCATGCCACAAATATCT
86430306 GTTGTAGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (28 bp):
TTCTGGTGGCCATGCCACAAATATCTAT
Found at i:86430323 original size:27 final size:28
Alignment explanation
Indices: 86430252--86430330 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 28
86430242 GGAGGAAGCA
* * *
86430252 TTCTGGTGGCCATGCCACAAATATCTAT
1 TTCTAGTGGCGATGCCACAAATATCTAG
*
86430280 TTCTGGTGGCGATGCCACAAATATCT-G
1 TTCTAGTGGCGATGCCACAAATATCTAG
* **
86430307 TTGTAGTGGCTCTGCCAC-AATATC
1 TTCTAGTGGCGATGCCACAAATATC
86430331 AATATCTGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 6 0.13
27 14 0.31
28 25 0.56
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.32
Consensus pattern (28 bp):
TTCTAGTGGCGATGCCACAAATATCTAG
Found at i:86430740 original size:36 final size:36
Alignment explanation
Indices: 86430693--86430767 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
86430683 CTGTAAGGGA
86430693 TTCGGAGTGGCCACATGTTCAGCAAATTCAGTTTTC
1 TTCGGAGTGGCCACATGTTCAGCAAATTCAGTTTTC
86430729 TTCGGAGTGGCCACATGTTCAGCAAATTCAGTTTTC
1 TTCGGAGTGGCCACATGTTCAGCAAATTCAGTTTTC
86430765 TTC
1 TTC
86430768 ATGTGTTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (36 bp):
TTCGGAGTGGCCACATGTTCAGCAAATTCAGTTTTC
Found at i:86443051 original size:12 final size:12
Alignment explanation
Indices: 86443034--86443058 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86443024 ATGCAAGTGA
86443034 TCTTGATGATTT
1 TCTTGATGATTT
86443046 TCTTGATGATTT
1 TCTTGATGATTT
86443058 T
1 T
86443059 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:86449773 original size:22 final size:22
Alignment explanation
Indices: 86449731--86449785 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
86449721 TATTTTATGT
* *
86449731 TTTTAATTTTTATTAAAACTAC
1 TTTTATTTTTTATTAAAACTAA
*
86449753 TTCTTATTTTTTATT-ATACTAA
1 TT-TTATTTTTTATTAAAACTAA
86449775 TTTTATTTTTT
1 TTTTATTTTTT
86449786 TAATCATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.31
22 9 0.31
23 11 0.38
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTTATTTTTTATTAAAACTAA
Found at i:86449787 original size:22 final size:23
Alignment explanation
Indices: 86449737--86449785 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
86449727 ATGTTTTTAA
*
86449737 TTTTTATTAAAACTACTTCTTAT
1 TTTTTATTAAAACTAATTCTTAT
*
86449760 TTTTTATT-ATACTAATT-TTAT
1 TTTTTATTAAAACTAATTCTTAT
86449781 TTTTT
1 TTTTT
86449786 TAATCATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 9 0.38
22 7 0.29
23 8 0.33
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTTTATTAAAACTAATTCTTAT
Found at i:86458409 original size:15 final size:15
Alignment explanation
Indices: 86458372--86458442 Score: 67
Period size: 15 Copynumber: 4.7 Consensus size: 15
86458362 GTATCTTGGG
*
86458372 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
86458387 TCTT-TTTATTCTGGA
1 T-TTCTTTATTCTGGA
*
86458402 TTTCTTTATT-TCGGG
1 TTTCTTTATTCT-GGA
*
86458417 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
86458432 TTTCTTTATTC
1 TTTCTTTATTC
86458443 GATTTTCTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
14 4 0.09
15 36 0.80
16 5 0.11
ACGTcount: A:0.11, C:0.17, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:86467054 original size:40 final size:40
Alignment explanation
Indices: 86466887--86467054 Score: 250
Period size: 40 Copynumber: 4.2 Consensus size: 40
86466877 CCTTCGGAGT
** * *
86466887 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
86466926 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
86466966 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
86467005 TTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
86467045 TTAGCCCGGA
1 TTAGCCCGGA
86467055 ATTAGCCACT
Statistics
Matches: 118, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 41 0.35
40 77 0.65
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:86467073 original size:40 final size:40
Alignment explanation
Indices: 86466887--86467093 Score: 235
Period size: 40 Copynumber: 5.2 Consensus size: 40
86466877 CCTTCGGAGT
* *
86466887 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGAC
* * *
86466926 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGAC
** *
86466966 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGAC
* * *
86467005 TTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGAC
* *
86467045 TTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGCAACTAGCACAAATGCCT-TCGGGAC
86467085 GTT-GCCCGG
1 -TTAGCCCGG
86467094 TTATCATCCG
Statistics
Matches: 149, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 44 0.30
40 103 0.69
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGAC
Found at i:86473203 original size:28 final size:28
Alignment explanation
Indices: 86473165--86473271 Score: 133
Period size: 28 Copynumber: 3.8 Consensus size: 28
86473155 GAATCATTCG
* *
86473165 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
86473193 ATATCTCGCACACTAAGTGCCATTCTCC
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
86473221 ATATTTCGTACACTAAGTGCCATTTTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
** *
86473249 ATATTTCATACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
86473272 ATTTGATTGC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:86474769 original size:52 final size:53
Alignment explanation
Indices: 86474691--86474797 Score: 198
Period size: 52 Copynumber: 2.0 Consensus size: 53
86474681 AAACCTACTC
86474691 GTCGGATTTGGTGGCCCCGAAACCACTATTCCGATTAACCCT-AAAATGGGCT
1 GTCGGATTTGGTGGCCCCGAAACCACTATTCCGATTAACCCTAAAAATGGGCT
*
86474743 GTCGGATTTGGTGGCCCCGAAACCACTGTTCCGATTAACCCTAAAAATGGGCT
1 GTCGGATTTGGTGGCCCCGAAACCACTATTCCGATTAACCCTAAAAATGGGCT
86474796 GT
1 GT
86474798 TACAGAAACA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
52 41 0.77
53 12 0.23
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (53 bp):
GTCGGATTTGGTGGCCCCGAAACCACTATTCCGATTAACCCTAAAAATGGGCT
Found at i:86484505 original size:53 final size:54
Alignment explanation
Indices: 86484310--86484566 Score: 224
Period size: 55 Copynumber: 4.8 Consensus size: 54
86484300 ATTAGGGTTT
* * *
86484310 AAGGATACCATGTAAAACCATGCCAAGGCATGGCATTTGGTAAGGTTTC-TAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA-TTGGTAA-GTTTCATAAGGC
** * * * *
86484365 AAGGATATTATTTAATACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* * *
86484420 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * *
86484473 AAGGATACCATGTAAGACCATGTCGAGACATGGAAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* ** ** *
86484522 AAGGATACCACGTAAGACCATGAAAAGTTATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
86484567 ACCCGTGTAT
Statistics
Matches: 166, Mismatches: 31, Indels: 16
0.78 0.15 0.08
Matches are distributed among these distances:
49 38 0.23
52 6 0.04
53 43 0.26
54 12 0.07
55 63 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:86484516 original size:108 final size:110
Alignment explanation
Indices: 86484317--86484519 Score: 277
Period size: 108 Copynumber: 1.9 Consensus size: 110
86484307 TTTAAGGATA
** * *
86484317 CCATGTAAAACCATGCCAAGGCATGGCATTTGGTAAGGTTTCTAAGGAAAGGATATTATTTAATA
1 CCATGTAAAACCATGCCAAGGCATGGCATTTGGTAAGGTTTCTAAGGAAAGGATACCATGTAAGA
* *
86484382 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTTCTATAAGGCAAAGGTC
* * *
86484427 CCATGTAAGACCATGCCAAGGCATGGCA-TTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAAACCATGCCAAGGCATGGCATTTGGTAAGGTTTC-TAAGGAAAGGATACCATGTAAG
* *
86484489 ACCATGTCGAGACATGGAAATGGTAAGTTTC
65 ACCATGTCAAGACATGGAAATGATAAGTTTC
86484520 AAAAGGATAC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 6 0.07
110 27 0.33
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (110 bp):
CCATGTAAAACCATGCCAAGGCATGGCATTTGGTAAGGTTTCTAAGGAAAGGATACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:86484560 original size:49 final size:49
Alignment explanation
Indices: 86484473--86484566 Score: 125
Period size: 49 Copynumber: 1.9 Consensus size: 49
86484463 TTCATAAGGC
* ***
86484473 AAGGATACCATGTAAGACCATGTCGAGACATGGAAATGGTAAGTTTCAA
1 AAGGATACCACGTAAGACCATGAAAAGACATGGAAATGGTAAGTTTCAA
** *
86484522 AAGGATACCACGTAAGACCATGAAAAGTTATGGCAATGGTAAGTT
1 AAGGATACCACGTAAGACCATGAAAAGACATGGAAATGGTAAGTT
86484567 ACCCGTGTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 38 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.22
Consensus pattern (49 bp):
AAGGATACCACGTAAGACCATGAAAAGACATGGAAATGGTAAGTTTCAA
Found at i:86489281 original size:47 final size:48
Alignment explanation
Indices: 86489229--86489656 Score: 321
Period size: 47 Copynumber: 9.0 Consensus size: 48
86489219 TTAGGATTTT
* *
86489229 ATGTGATGAATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAGACATGCATATATGTGGTAAGGCCGAATGGCCA
* * *
86489276 ATGTGATGAATGTGAG-CATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAGACATGCATATATGTGGTAAGGCCGAATGGCCA
* * * *
86489323 ATGTGGTGAATATGA-ACATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATATGAGACATGCATATATGTGGTAAGGCCGAATGGCCA
** * * *
86489370 ATGTGAAAAATTTATGAGAAATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAA--TATGAGACATGCATATATGTGGTAAGGCCGAATGGCCA
* * * * * *
86489418 ATGTGAAAT-ATGTATGAGATATGC--ATATGTGGTAAAGCTGAACGGTCA
1 ATGTG--ATGA-ATATGAGACATGCATATATGTGGTAAGGCCGAATGGCCA
* *
86489466 ATGTGAAATATATATATGAGATATGC--ATATGTGGTAAGGCCGAATGGCCA
1 ATGTG--AT-GA-ATATGAGACATGCATATATGTGGTAAGGCCGAATGGCCA
* ** *
86489516 ATGTGATGAATGTGAG-CATGCATACGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAGACATGCATATATGTGGTAAGGCCGAATGGCCA
* * *
86489563 ATGTGGTGAATATGAGATATGC--ATATGTGGTACA-GCCGAATGGTCA
1 ATGTGATGAATATGAGACATGCATATATGTGGTA-AGGCCGAATGGCCA
* * * *
86489609 ATGCGAAATATATATATGAGATATG--TATATGTGGTAAAGCCGAATGGC
1 ATGTG--AT-GA-ATATGAGACATGCATATATGTGGTAAGGCCGAATGGC
86489657 TAGTGTGAAA
Statistics
Matches: 319, Mismatches: 41, Indels: 39
0.80 0.10 0.10
Matches are distributed among these distances:
45 4 0.01
46 28 0.09
47 128 0.40
48 76 0.24
49 8 0.03
50 75 0.24
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (48 bp):
ATGTGATGAATATGAGACATGCATATATGTGGTAAGGCCGAATGGCCA
Found at i:86489331 original size:25 final size:25
Alignment explanation
Indices: 86489256--86489331 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
86489246 ATGCATATAT
86489256 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
86489281 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
86489303 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
86489328 GTGA
1 GTGA
86489332 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:86489408 original size:48 final size:47
Alignment explanation
Indices: 86489346--86489666 Score: 310
Period size: 48 Copynumber: 6.7 Consensus size: 47
86489336 GAACATGTAT
* *
86489346 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATTTATGAGAAATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAA-TTATGAGATATGC
*
86489394 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAAT-TATGAGATATGC
* *
86489442 ATATGTGGTAAAGCTGAACGG-TCAATGTGAAATATATATATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-AT-TATGAGATATGC
* * ** * *
86489492 ATATGTGGTAAGGCCGAATGGCCAATGTGATGAA-TGTGAG-CATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATTATGAGATATGC
* * * ***
86489537 ATACGTGTGATAAGGCCGAATGGCCAATGTGGTGAA-TATGAGATATGC
1 ATA--TGTGGTAAAGCCGAATGGCTAATGTGAAAAATTATGAGATATGC
* * *
86489585 ATATGTGGTACAGCCGAATGG-TCAATGCGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-AT-TATGAGATATGC
*
86489635 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAA
86489667 TATGTAGGTG
Statistics
Matches: 228, Mismatches: 31, Indels: 26
0.80 0.11 0.09
Matches are distributed among these distances:
45 7 0.03
46 25 0.11
47 37 0.16
48 80 0.35
49 1 0.00
50 77 0.34
51 1 0.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (47 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATTATGAGATATGC
Found at i:86489518 original size:193 final size:195
Alignment explanation
Indices: 86489293--86489648 Score: 488
Period size: 193 Copynumber: 1.8 Consensus size: 195
86489283 GAATGTGAGC
* * * *
86489293 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGGTAAA
1 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATACATGTGATAAA
* * *
86489358 GCCGAATGGCTAATGTGAAAAATTTATGAGAAATGTATATGTGGTAAAGCCGAATGG-CTAATGT
66 GCCGAATGGCCAATGTGAAAAA--TATGAGAAATGCATATGTGGTAAAGCCGAATGGTC-AATGC
*
86489422 G-AA-ATATGTATGAGATATGCATATGTGGTAAAGCTGAACGGTCAATGTGAAATATATATATGA
128 GAAATATATATATGAGATATGCATATGTGGTAAAGCTGAACGGTCAATGTGAAATATATATATGA
86489485 GAT
193 GAT
* * * *
86489488 ATGCATATGTG-G-TAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATACGTGTGATAAG
1 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATACATGTGATAAA
*** * *
86489551 GCCGAATGGCCAATGTGGTGAATATGAGATATGCATATGTGGTACAGCCGAATGGTCAATGCGAA
66 GCCGAATGGCCAATGTGAAAAATATGAGAAATGCATATGTGGTAAAGCCGAATGGTCAATGCGAA
*
86489616 ATATATATATGAGATATGTATATGTGGTAAAGC
131 ATATATATATGAGATATGCATATGTGGTAAAGC
86489649 CGAATGGCTA
Statistics
Matches: 140, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
191 35 0.25
192 3 0.02
193 90 0.64
194 1 0.01
195 11 0.08
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (195 bp):
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATACATGTGATAAA
GCCGAATGGCCAATGTGAAAAATATGAGAAATGCATATGTGGTAAAGCCGAATGGTCAATGCGAA
ATATATATATGAGATATGCATATGTGGTAAAGCTGAACGGTCAATGTGAAATATATATATGAGAT
Found at i:86489593 original size:143 final size:140
Alignment explanation
Indices: 86489229--86489656 Score: 447
Period size: 143 Copynumber: 3.0 Consensus size: 140
86489219 TTAGGATTTT
* * *
86489229 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAG-C
1 ATGTGATGAATGTGAGCATGC--ATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAGAT
* * * *
86489293 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGA-ACAT--G-TAT-ATATGTG
64 ATGCATATGTG-G-TAAAGCCGAATGGTCAATGT-G-AAATAT-ATATATGAGATATGATATGTG
*
86489353 GTAAAGCCGAATGGCTA
124 GTAAAGCCGAATGGCCA
** * * * * * * *
86489370 ATGTGAAAAATTTATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-ATGTATG
1 ATGTGATGAA--TGTGAG-CATGCATATGTGATAAGGCCGAATGGCCAATGTG--ATGA-ATATG
* *
86489434 AGATATGCATATGTGGTAAAGCTGAACGGTCAATGTGAAATATATATATGAGATATGCATATGTG
60 AGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATG-ATATGTG
*
86489499 GTAAGGCCGAATGGCCA
124 GTAAAGCCGAATGGCCA
*
86489516 ATGTGATGAATGTGAGCATGCATACGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAGAT
1 ATGTGATGAATGTGAGCATGCATA--TGTGATAAGGCCGAATGGCCAATGTGATGAATATGAGAT
* *
86489581 ATGCATATGTGGTACAGCCGAATGGTCAATGCGAAATATATATATGAGATATGTATATGTGGTAA
64 ATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATG-ATATGTGGTAA
86489646 AGCCGAATGGC
128 AGCCGAATGGC
86489657 TAGTGTGAAA
Statistics
Matches: 235, Mismatches: 36, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
140 1 0.00
141 16 0.07
142 27 0.11
143 107 0.46
144 20 0.09
145 34 0.14
146 30 0.13
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (140 bp):
ATGTGATGAATGTGAGCATGCATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAGATAT
GCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGATATGTGGTAAAGC
CGAATGGCCA
Found at i:86489711 original size:240 final size:238
Alignment explanation
Indices: 86489252--86489713 Score: 669
Period size: 240 Copynumber: 1.9 Consensus size: 238
86489242 GAACATGCAT
*
86489252 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATACGTGTGATAAGGCCGAA
* * *
86489317 TGGCCAATGTGGTGAATATGAACATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATT
66 TGGCCAATGTGGTGAATATGAACATG-ACATATGTGGTAAAGCCGAATGGCTAATGCGAAAAATA
* *
86489382 TATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
130 TATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGCATATA
* **
86489447 TGGTAAAGCTGAACGGTCAATGTGAAATATATATATGAGATATGC
195 TGGT-AAGCCGAACGACCAATGTGAAATATATATATGAGATATGC
*
86489492 ATATGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATACGTGTGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATACGTGTGATAAGGCCGAA
* *
86489557 TGGCCAATGTGGTGAATATGAGATATG-CATATGTGGTACAGCCGAATGG-TCAATGCGAAATAT
66 TGGCCAATGTGGTGAATATGA-ACATGACATATGTGGTAAAGCCGAATGGCT-AATGCGAAA-A-
* * * * *
86489620 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGTGATGTGCGT
127 ATATATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGCAT
* *
86489685 ATATTGT-GGCCGAACGACCAAATGTGAAA
192 ATATGGTAAGCCGAACGACC-AATGTGAAA
86489714 GGTGTGTATT
Statistics
Matches: 198, Mismatches: 19, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
238 1 0.01
239 36 0.18
240 94 0.47
241 67 0.34
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.27
Consensus pattern (238 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATACGTGTGATAAGGCCGAA
TGGCCAATGTGGTGAATATGAACATGACATATGTGGTAAAGCCGAATGGCTAATGCGAAAAATAT
ATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGCATATAT
GGTAAGCCGAACGACCAATGTGAAATATATATATGAGATATGC
Found at i:86489964 original size:37 final size:37
Alignment explanation
Indices: 86489819--86489963 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
86489809 GGAAATATAT
*
86489819 TCCGGGTAAGACCCGATGACTACGCGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
86489856 TTCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
86489893 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
86489930 TCCGGGTAAGACCCGATAACTTCGTGTGGTGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
86489964 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:86496524 original size:27 final size:28
Alignment explanation
Indices: 86496415--86496537 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
86496405 GAGATTGGCG
* * * *
86496415 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
86496444 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
86496472 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
86496500 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86496527 CTGAGTGTGCG
1 CTAAGTGTGCG
86496538 GACTTAATAT
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.27
28 50 0.56
29 15 0.17
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:86496548 original size:27 final size:27
Alignment explanation
Indices: 86496440--86496550 Score: 143
Period size: 28 Copynumber: 4.0 Consensus size: 27
86496430 TAAATTGTAC
*
86496440 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
86496468 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
86496496 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
86496523 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGATTATAT
86496550 A
1 A
86496551 CTTTTGAATC
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
27 30 0.38
28 48 0.62
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:86498479 original size:49 final size:50
Alignment explanation
Indices: 86498408--86498640 Score: 263
Period size: 49 Copynumber: 4.7 Consensus size: 50
86498398 AGCTATTGTG
* * * *
86498408 AGGTCACGTGTGTAGCATTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
86498458 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * * *
86498508 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGTTGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * *
86498558 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* *
86498608 -GGTCGCATGTGTAGTACTAAGTGCCGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
86498641 TGCATACCAA
Statistics
Matches: 152, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
49 68 0.45
50 47 0.31
51 37 0.24
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:86498545 original size:28 final size:28
Alignment explanation
Indices: 86498513--86498596 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
86498503 AACTTCGATC
86498513 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
86498541 ACGTGTATCAGT--T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
86498563 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
86498591 ACGTGT
1 ACGTGT
86498597 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 3 0.07
22 7 0.17
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 13 0.31
29 3 0.07
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:86498605 original size:101 final size:98
Alignment explanation
Indices: 86498411--86498640 Score: 309
Period size: 100 Copynumber: 2.3 Consensus size: 98
86498401 TATTGTGAGG
* * *
86498411 TCACGTGTGTAGCATTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCACATGTGTAGTACT
* *
86498476 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCGGATAA-TT-GA
* *
86498511 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAG-TTGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT-GTT-GGTCACATGTGTAGTA
* *
86498575 CTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
64 CTAAGTGCAGGCTACTACGCGTACCGGATAATTGA
* * *
86498610 TCGCATGTGTAGTACTAAGTGCCGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
86498641 TGCATACCAA
Statistics
Matches: 116, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
99 31 0.27
100 43 0.37
101 42 0.36
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAATTGA
Found at i:86504267 original size:49 final size:49
Alignment explanation
Indices: 86504195--86504431 Score: 269
Period size: 49 Copynumber: 4.8 Consensus size: 49
86504185 TGAGGGCACG
*
86504195 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTTTGGTCACA
* * * * * * *
86504244 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TTTTGGTCACA
* * * *
86504295 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAG-TTGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--TTTGGTCACA
* ** *
86504345 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTTTGGTCACA
* *
86504394 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
86504432 AGCTTCGGCT
Statistics
Matches: 156, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 76 0.49
50 42 0.27
51 38 0.24
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTTTGGTCACA
Found at i:86504384 original size:101 final size:98
Alignment explanation
Indices: 86504191--86504431 Score: 322
Period size: 101 Copynumber: 2.4 Consensus size: 98
86504181 ATTGTGAGGG
* *
86504191 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTTTGGTCGCATGTGTAGTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTTAGGTCACATGTGTAGTACTA
* *
86504256 AGTGCAGGCTACTATGCGTACCTGATAACTTCGAT
66 AGTGCAGGCTACTACGCGTACCGGATAA-TT-GAT
* * *
86504291 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAG-TTGGTTAGGTCACGTGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--TTAGGTCACATGTGTAGTAC
* *
86504355 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGT
64 TAAGTGCAGGCTACTACGCGTACCGGATAATTGAT
* * * *
86504390 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
86504432 AGCTTCGGCT
Statistics
Matches: 123, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
99 38 0.31
100 41 0.33
101 44 0.36
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (98 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTTAGGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCGGATAATTGAT
Found at i:86513775 original size:32 final size:32
Alignment explanation
Indices: 86513734--86513798 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
86513724 AACCTCATGC
86513734 AACAAAGATTTGAATCTAAAGCAACTAATCAA
1 AACAAAGATTTGAATCTAAAGCAACTAATCAA
86513766 AACAAAGATTTGAATCTAAAGCAACTAATCAA
1 AACAAAGATTTGAATCTAAAGCAACTAATCAA
86513798 A
1 A
86513799 CTCTATTTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.54, C:0.15, G:0.09, T:0.22
Consensus pattern (32 bp):
AACAAAGATTTGAATCTAAAGCAACTAATCAA
Found at i:86524698 original size:27 final size:27
Alignment explanation
Indices: 86524668--86524823 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
86524658 TGCTATTCAC
* *
86524668 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
86524695 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
86524722 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
86524750 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
86524777 TCCTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
86524804 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
86524824 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:86524739 original size:55 final size:55
Alignment explanation
Indices: 86524673--86524824 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
86524663 TTCACTCAAC
* * *
86524673 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTACAT
* ** * * *
86524728 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCCTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
* *
86524782 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
86524825 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
Found at i:86558119 original size:80 final size:78
Alignment explanation
Indices: 86558035--86558206 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 78
86558025 GGACTAAGAT
*
86558035 CCGAAGGCATTTGTGCGAG-A-TACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTTGTGCGAGCATTA-AA--TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATAC
* *
86558098 TAAATCCGGGTTAAGTC
62 TAAAACCGGGCTAAGTC
* * * *
86558115 CCGAAGGCATTCGTGCGAGTCATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-CATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
86558180 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
86558194 CCGAAGGCATTTG
1 CCGAAGGCATTTG
86558207 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
79 38 0.47
80 37 0.46
82 3 0.04
83 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGCATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:86558197 original size:39 final size:39
Alignment explanation
Indices: 86557982--86558204 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
86557972 TTGAATGCTG
* * * * * *
86557982 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
86558022 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
86558062 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* *
86558102 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
86558142 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
86558181 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
86558205 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 37 0.24
40 105 0.69
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:86558224 original size:79 final size:80
Alignment explanation
Indices: 86558062--86558239 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
86558052 AGATACAAGT
* * * *
86558062 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
86558127 GTGCGAGTCATTAAA
66 GAACGAGTCACTAAA
* * * *
86558142 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
86558206 GAACGAG-GAGCTATA
66 GAACGAGTCA-CTAAA
*
86558221 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
86558240 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTCACTAAA
Found at i:86566070 original size:24 final size:23
Alignment explanation
Indices: 86566025--86566070 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
86566015 CTTAACACCT
**
86566025 TAAATCTACAATTATTGTCAAAC
1 TAAATCTACAATTATTCACAAAC
*
86566048 TAAATTTACAATTTATTCACAAA
1 TAAATCTACAA-TTATTCACAAA
86566071 ATCCTATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (23 bp):
TAAATCTACAATTATTCACAAAC
Found at i:86569483 original size:53 final size:54
Alignment explanation
Indices: 86569402--86569606 Score: 196
Period size: 53 Copynumber: 3.8 Consensus size: 54
86569392 TTTCCTTTTT
* * * * * *
86569402 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCATTACTTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
* * * *
86569455 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
* * * * ** * *
86569509 GTAACTCATCAATGCCATGTCTTGACATAGTCTTACCTAATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
* * * *
86569564 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
86569607 TTTATCTTAC
Statistics
Matches: 122, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 43 0.35
54 36 0.30
55 43 0.35
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
Found at i:86569525 original size:55 final size:53
Alignment explanation
Indices: 86569413--86569601 Score: 191
Period size: 55 Copynumber: 3.5 Consensus size: 53
86569403 AACTTACCAT
* * * * * *
86569413 TGCCATGTCTTGACATGGTCTTACGTGGTATCATTACTTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* *
86569466 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * ** * *
86569521 TGCCATGTCTTGACATAGTCTTACCTAATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACAT-GGTACCTTGCCTTATAGAACTCATCAA
*
86569575 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
86569602 ATATCTTTAT
Statistics
Matches: 110, Mismatches: 22, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
52 1 0.01
53 33 0.30
54 32 0.29
55 42 0.38
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:86569729 original size:47 final size:47
Alignment explanation
Indices: 86569634--86569797 Score: 131
Period size: 45 Copynumber: 3.5 Consensus size: 47
86569624 CATGTTCCAA
*
86569634 ACATGGTCTTACATGGTATCCTTGTCTTAATGCCAATGCCACATCTTG
1 ACATGGTCTTACATGGTATCCTTATC-TAATGCCAATGCCACATCTTG
** * **
86569682 ATGTGGTCTTACATGG-AGTCCTTAATC-AATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGTA-TCCTT-ATCTAATGCCAATGCCACATCTTG
* * ** * **
86569729 ACATGGTCTTACACAGG-ACCCTTGCCT--TACCAATGCCATGTCTTG
1 ACATGGTCTTACA-TGGTATCCTTATCTAATGCCAATGCCACATCTTG
*
86569774 ACATAGTCTTACATGGTATCCTTA
1 ACATGGTCTTACATGGTATCCTTA
86569798 ACCGTCAATT
Statistics
Matches: 93, Mismatches: 18, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
44 2 0.02
45 33 0.35
46 1 0.01
47 33 0.35
48 22 0.24
49 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (47 bp):
ACATGGTCTTACATGGTATCCTTATCTAATGCCAATGCCACATCTTG
Found at i:86575678 original size:53 final size:53
Alignment explanation
Indices: 86575605--86575763 Score: 205
Period size: 53 Copynumber: 3.0 Consensus size: 53
86575595 GAACCTTTTC
* * *
86575605 CTTT-TGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTG
1 CTTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTG
* * *
86575657 CTTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTG
1 CTTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTG
* *
86575710 CCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 CTTTAT-G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
86575764 AACTGTCAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
52 6 0.07
53 44 0.48
54 1 0.01
55 38 0.42
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTG
Found at i:86594915 original size:68 final size:64
Alignment explanation
Indices: 86594792--86595050 Score: 220
Period size: 68 Copynumber: 3.9 Consensus size: 64
86594782 TGGATGATAC
* * ** * *
86594792 AGATAGTATGTAGCTATGTCACATGTATGGTGCTGA-GTGTACATCATGT-GTACAAGAGAGCTA
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTA
86594855 CAAG
63 C--G
* *
86594859 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
86594924 G
64 G
* * * * * *
86594925 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
86594990 CG
63 CG
* * * * *
86594992 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGTATACAAGAGAGC
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAGACAAGAGAGC
86595051 CGAACTATAT
Statistics
Matches: 157, Mismatches: 27, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
63 20 0.13
64 25 0.16
65 3 0.02
66 23 0.15
67 37 0.24
68 48 0.31
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:86609711 original size:17 final size:18
Alignment explanation
Indices: 86609670--86609712 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
86609660 TGTCAAAGTT
*
86609670 GGATTCTAATAGCTATAA
1 GGATTCAAATAGCTATAA
*
86609688 GGA-TCAAATAGCTATGA
1 GGATTCAAATAGCTATAA
86609705 -GATTCAAA
1 GGATTCAAA
86609713 ATGTGAGGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 2 0.09
17 17 0.77
18 3 0.14
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.28
Consensus pattern (18 bp):
GGATTCAAATAGCTATAA
Found at i:86610894 original size:33 final size:33
Alignment explanation
Indices: 86610800--86610928 Score: 168
Period size: 33 Copynumber: 3.9 Consensus size: 33
86610790 AATGGTACAC
* *
86610800 TTGAAAAGGTTATGTACACTTTGTGTGTAAAAT
1 TTGAAAAGGTTATGTACACTTTGAGTGTACAAT
*
86610833 TTGAAAAGGTTATGTACACTTTGTGTGTACAAT
1 TTGAAAAGGTTATGTACACTTTGAGTGTACAAT
* * * *
86610866 TTGAAAAGGCTATGTACACTTTAAGTGTACCAC
1 TTGAAAAGGTTATGTACACTTTGAGTGTACAAT
** *
86610899 TTGAAAAGGGAATGTACACCTTGAGTGTAC
1 TTGAAAAGGTTATGTACACTTTGAGTGTAC
86610929 GACTGGAAAA
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 86 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.34
Consensus pattern (33 bp):
TTGAAAAGGTTATGTACACTTTGAGTGTACAAT
Found at i:86610938 original size:33 final size:33
Alignment explanation
Indices: 86610794--86610938 Score: 157
Period size: 33 Copynumber: 4.4 Consensus size: 33
86610784 TACCTAAATG
* *
86610794 GTAC-ACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACAACTTGAAAAGGCTATGTACACTTTGAGT
* * * *
86610826 GTAAAATTTGAAAAGGTTATGTACACTTTGTGT
1 GTACAACTTGAAAAGGCTATGTACACTTTGAGT
* *
86610859 GTACAATTTGAAAAGGCTATGTACACTTTAAGT
1 GTACAACTTGAAAAGGCTATGTACACTTTGAGT
* ** *
86610892 GTACCACTTGAAAAGGGAATGTACACCTTGAGT
1 GTACAACTTGAAAAGGCTATGTACACTTTGAGT
* *
86610925 GTACGACTGGAAAA
1 GTACAACTTGAAAA
86610939 TGTTACGTCC
Statistics
Matches: 98, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
32 3 0.03
33 95 0.97
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (33 bp):
GTACAACTTGAAAAGGCTATGTACACTTTGAGT
Found at i:86612190 original size:26 final size:26
Alignment explanation
Indices: 86612161--86612260 Score: 182
Period size: 26 Copynumber: 3.8 Consensus size: 26
86612151 TGATACAAAT
86612161 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
86612187 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
86612213 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
86612239 TGATAATGGGTTAGGTAAATGT
1 TGATAATGGGTTAGGTAAATGT
86612261 CTTTTGTATT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.32, C:0.04, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:86612289 original size:24 final size:24
Alignment explanation
Indices: 86612257--86612303 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
86612247 GGTTAGGTAA
86612257 ATGTCTTTTGTATTAAAGAATTTC
1 ATGTCTTTTGTATTAAAGAATTTC
86612281 ATGTCTTTTGTATTAAAGAATTT
1 ATGTCTTTTGTATTAAAGAATTT
86612304 AATGGATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.06, G:0.13, T:0.51
Consensus pattern (24 bp):
ATGTCTTTTGTATTAAAGAATTTC
Found at i:86613753 original size:28 final size:27
Alignment explanation
Indices: 86613711--86613785 Score: 75
Period size: 26 Copynumber: 2.8 Consensus size: 27
86613701 AAAAGTAACT
* * *
86613711 AAATTACTATAATACCCT-TATGTATGGA
1 AAATTACTGTTATACCCTCTA-G-ATGCA
*
86613739 AAATTACTGTTATA-CCTCTAGGTGCA
1 AAATTACTGTTATACCCTCTAGATGCA
86613765 AAATTACTGTTATACCC-CTAG
1 AAATTACTGTTATACCCTCTAG
86613786 GGTTAATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 21 0.51
27 6 0.15
28 14 0.34
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (27 bp):
AAATTACTGTTATACCCTCTAGATGCA
Found at i:86613930 original size:27 final size:26
Alignment explanation
Indices: 86613890--86614030 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 26
86613880 AGGAAGCGTC
*
86613890 CTGGTGGCTATGCCACAATTATCTTAT
1 CTGGTGGCTCTGCCAC-ATTATCTTAT
*
86613917 CTGGTGGCTCTGCCACATATATCTTTT
1 CTGGTGGCTCTGCCACAT-TATCTTAT
* *
86613944 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTTAT
86613971 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCT-TAT
*
86613998 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCT-TAT
*
86614025 TTGGTG
1 CTGGTG
86614031 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
26 11 0.11
27 87 0.87
28 2 0.02
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTTAT
Done.