Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 270 of 325
Found at i:86613973 original size:54 final size:53
Alignment explanation
Indices: 86613890--86614030 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 53
86613880 AGGAAGCGTC
* *
86613890 CTGGTGGCTATGCCACAATTATCTTATCTGGTGGCTCTGCCACATATATCTTTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86613944 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
86613998 CTGGTGGCTCTGCCACAATATCTGTATTTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
86614031 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:86615044 original size:16 final size:16
Alignment explanation
Indices: 86615014--86615043 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86615004 GGGTTTACAA
86615014 AAAAACAAAGATTTTC
1 AAAAACAAAGATTTTC
86615030 AAAAACAAA-ATTTT
1 AAAAACAAAGATTTT
86615044 TTTTGCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.10, G:0.03, T:0.27
Consensus pattern (16 bp):
AAAAACAAAGATTTTC
Found at i:86617630 original size:21 final size:19
Alignment explanation
Indices: 86617606--86617645 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
86617596 AATGGTGATG
86617606 GAATTCTATGTTTCCGAGGAA
1 GAATT-TATG-TTCCGAGGAA
*
86617627 GAATTTGTGTTCCGAGGAA
1 GAATTTATGTTCCGAGGAA
86617646 CTCTGATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 3 0.17
21 5 0.28
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (19 bp):
GAATTTATGTTCCGAGGAA
Found at i:86619336 original size:25 final size:26
Alignment explanation
Indices: 86619295--86619400 Score: 189
Period size: 25 Copynumber: 4.2 Consensus size: 26
86619285 TGATACAAAT
86619295 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86619321 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86619346 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86619372 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86619397 TGAT
1 TGAT
86619401 GGAATTTCAT
Statistics
Matches: 77, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
25 46 0.60
26 31 0.40
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86619350 original size:51 final size:51
Alignment explanation
Indices: 86619295--86619400 Score: 203
Period size: 51 Copynumber: 2.1 Consensus size: 51
86619285 TGATACAAAT
*
86619295 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
86619346 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
86619397 TGAT
1 TGAT
86619401 GGAATTTCAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
Found at i:86620876 original size:28 final size:26
Alignment explanation
Indices: 86620845--86620906 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
86620835 TTACTATAAG
* *
86620845 ACCCCTATGTATGGAAAATTACTGTTAT
1 ACCCCTA-G-ATGCAAAATTACCGTTAT
*
86620873 ACCCCTAGGTGCAAAATTACCGTTAT
1 ACCCCTAGATGCAAAATTACCGTTAT
86620899 ACCCCTAG
1 ACCCCTAG
86620907 GGTTAATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 23 0.74
27 1 0.03
28 7 0.23
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (26 bp):
ACCCCTAGATGCAAAATTACCGTTAT
Found at i:86621094 original size:54 final size:53
Alignment explanation
Indices: 86621011--86621169 Score: 221
Period size: 54 Copynumber: 3.0 Consensus size: 53
86621001 AGGAAGCGTC
86621011 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
* *
86621065 TTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
* * * * *
86621119 CTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTCGTCACA-ATATCTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTGGCTTTGCCACATATATCTG
86621170 GCAGCCTCGC
Statistics
Matches: 94, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 14 0.15
54 80 0.85
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
Found at i:86621147 original size:32 final size:27
Alignment explanation
Indices: 86621011--86621151 Score: 180
Period size: 27 Copynumber: 5.2 Consensus size: 27
86621001 AGGAAGCGTC
*
86621011 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
* *
86621038 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
* *
86621065 TTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
86621092 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
86621119 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
86621146 CTGGTG
1 CTGGTG
86621152 ACTTCGTCAC
Statistics
Matches: 101, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
26 9 0.09
27 89 0.88
28 3 0.03
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:86621162 original size:27 final size:27
Alignment explanation
Indices: 86621011--86621169 Score: 145
Period size: 27 Copynumber: 5.9 Consensus size: 27
86621001 AGGAAGCGTC
86621011 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
*
86621038 CTGGTGGCTTTGCCACATATATCTGT-T
1 CTGGTGGCTTCGCCACA-ATATCTGTAT
* *
86621065 TTGGTGGCTAT-GCCACGATTATCTG-AT
1 CTGGTGGCT-TCGCCAC-AATATCTGTAT
86621092 CTGGTGGC-TCTGCCACATATATCTGT-T
1 CTGGTGGCTTC-GCCACA-ATATCTGTAT
86621119 CTGGTGGC-TCTGCCACAATATCTGTAT
1 CTGGTGGCTTC-GCCACAATATCTGTAT
* *
86621146 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTCGCCACAATATCTG
86621170 GCAGCCTCGC
Statistics
Matches: 114, Mismatches: 6, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
25 1 0.01
26 10 0.09
27 98 0.86
28 5 0.04
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTTCGCCACAATATCTGTAT
Found at i:86623401 original size:163 final size:163
Alignment explanation
Indices: 86623131--86623458 Score: 620
Period size: 163 Copynumber: 2.0 Consensus size: 163
86623121 GAGTTTGGGG
*
86623131 AAACTCAGTGTGTAAATTAACCCAACCATAGCCTATATCGGTTCAAACCACAGAGAACATAATAA
1 AAACTCAGTGTGTAAATTAACCCAACCATAGCCTATATCGGTTCAAACCACAGAGAACAGAATAA
*
86623196 GTTGGCCTTAGCCCAGAACAGAAGTCAGAATAAAGCCCATAGGCCCATAACAGAACATAACAGAT
66 GTTGGCCTTAGCCCAGAACAGAAGTCAGAATAAAGCCCATAGGCCCATAACAGAACAGAACAGAT
86623261 ATCACAAGTTTATGTAGTACCCAACCCATATCC
131 ATCACAAGTTTATGTAGTACCCAACCCATATCC
* *
86623294 AAACTCAGTGTGTAAATTAACCCAGCCATAGCCTATATCGGTTCAAACCACAGAGAATAGAATAA
1 AAACTCAGTGTGTAAATTAACCCAACCATAGCCTATATCGGTTCAAACCACAGAGAACAGAATAA
86623359 GTTGGCCTTAGCCCAGAACAGAAGTCAGAATAAAGCCCATAGGCCCATAACAGAACAGAACAGAT
66 GTTGGCCTTAGCCCAGAACAGAAGTCAGAATAAAGCCCATAGGCCCATAACAGAACAGAACAGAT
86623424 ATCACAAGTTTATGTAGTACCCAACCCATATCC
131 ATCACAAGTTTATGTAGTACCCAACCCATATCC
86623457 AA
1 AA
86623459 CCGCATGCAC
Statistics
Matches: 161, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 161 1.00
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.20
Consensus pattern (163 bp):
AAACTCAGTGTGTAAATTAACCCAACCATAGCCTATATCGGTTCAAACCACAGAGAACAGAATAA
GTTGGCCTTAGCCCAGAACAGAAGTCAGAATAAAGCCCATAGGCCCATAACAGAACAGAACAGAT
ATCACAAGTTTATGTAGTACCCAACCCATATCC
Found at i:86623605 original size:27 final size:27
Alignment explanation
Indices: 86623551--86623661 Score: 163
Period size: 27 Copynumber: 4.1 Consensus size: 27
86623541 AGCATGGTTG
* *
86623551 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
86623577 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
86623604 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
86623631 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
86623658 CCAG
1 CCAG
86623662 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
26 15 0.19
27 61 0.78
28 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:86625105 original size:24 final size:24
Alignment explanation
Indices: 86625070--86625146 Score: 136
Period size: 24 Copynumber: 3.2 Consensus size: 24
86625060 CCAACACTGT
*
86625070 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
86625094 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
86625118 TCTCCCTTATTAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
86625142 TCTCC
1 TCTCC
86625147 TGACAGACTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.21, C:0.42, G:0.04, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:86625812 original size:14 final size:15
Alignment explanation
Indices: 86625793--86625821 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86625783 AAAGTTCATA
86625793 TGGA-TTTTCTTGTC
1 TGGATTTTTCTTGTC
86625807 TGGATTTTTCTTGTC
1 TGGATTTTTCTTGTC
86625822 CTTGAAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.07, C:0.14, G:0.21, T:0.59
Consensus pattern (15 bp):
TGGATTTTTCTTGTC
Found at i:86632425 original size:15 final size:15
Alignment explanation
Indices: 86632405--86632437 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
86632395 CAAACGTGAA
86632405 TAAGTCCAAGGTCTC
1 TAAGTCCAAGGTCTC
86632420 TAAGTCCAAGGTCTC
1 TAAGTCCAAGGTCTC
86632435 TAA
1 TAA
86632438 ATGATCATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (15 bp):
TAAGTCCAAGGTCTC
Found at i:86639933 original size:10 final size:10
Alignment explanation
Indices: 86639914--86639946 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
86639904 TTGACCACCA
86639914 TTGACC-ATG
1 TTGACCTATG
86639923 TTGACCTATG
1 TTGACCTATG
*
86639933 TTGACCTACG
1 TTGACCTATG
86639943 TTGA
1 TTGA
86639947 TTGGTCGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 6 0.27
10 16 0.73
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (10 bp):
TTGACCTATG
Found at i:86640112 original size:27 final size:27
Alignment explanation
Indices: 86640035--86640114 Score: 97
Period size: 29 Copynumber: 2.9 Consensus size: 27
86640025 TAAAATTAAT
* *
86640035 TTAAAATATTAAAAAATTGTAAAAGTTC
1 TTAAAAT-GTAAAAAATTGTAAAAGTGC
* *
86640063 TTAAAATGCAAAAAAAATTGTAATAGTGC
1 TTAAAATG--TAAAAAATTGTAAAAGTGC
86640092 TTAAAATGTAAAAAATTGTAAAA
1 TTAAAATGTAAAAAATTGTAAAA
86640115 ACTACAATAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 13 0.30
28 7 0.16
29 24 0.55
ACGTcount: A:0.55, C:0.04, G:0.10, T:0.31
Consensus pattern (27 bp):
TTAAAATGTAAAAAATTGTAAAAGTGC
Found at i:86640450 original size:15 final size:16
Alignment explanation
Indices: 86640427--86640460 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
86640417 AAAAATGTAA
86640427 AAATGTAAAAATCATT
1 AAATGTAAAAATCATT
*
86640443 AAAT-TAAAAATGATT
1 AAATGTAAAAATCATT
86640458 AAA
1 AAA
86640461 AGTTGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (16 bp):
AAATGTAAAAATCATT
Found at i:86644527 original size:27 final size:27
Alignment explanation
Indices: 86644497--86644758 Score: 310
Period size: 27 Copynumber: 9.7 Consensus size: 27
86644487 TGTAGGGTAG
**
86644497 AATTACCAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTGTAA
86644524 AATTACCAAAATATCCC-TGGTTTGTAA
1 AATTACCAAAATA-CCCTTGGTTTGTAA
**
86644551 AATTACCAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
86644578 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * **
86644605 AATTACCAAAATACCTTTAGTTTACAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * *
86644632 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATACCCTTGGTTTGTAA
*** * **
86644659 AATTATTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* **
86644686 AATTACCAAAATACCATTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
86644713 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
86644740 AATTACCAAAATACCCTTG
1 AATTACCAAAATACCCTTG
86644759 TAGGGTAGAA
Statistics
Matches: 193, Mismatches: 40, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 3 0.02
27 187 0.97
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:86644536 original size:54 final size:52
Alignment explanation
Indices: 86644462--86644771 Score: 253
Period size: 54 Copynumber: 5.7 Consensus size: 52
86644452 GAATACTTTA
*** *
86644462 GTTTACAAAATTATTGAAATACTCCTGTAGGGTAGAATTACCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATAC-CCTGT-GGGTAAAATTACCAAAATACCCTTG
**
86644516 GTTTACAAAATTACCAAAATATCCCTGGTTTGTAAAATTACCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATA-CCCT-GTGGGTAAAATTACCAAAATACCCTTG
** * *
86644570 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTTTA
1 GTTTACAAAATTACCAAAATA-CCCT-GTGGGTAAAATTACCAAAATACCCTTG
** * *** *
86644624 GTTTACAAAATTACCAAAATACCCCTGATTTGTGAAATTATTGAAATACCCTCG
1 GTTTACAAAATTACCAAAATA-CCCTG-TGGGTAAAATTACCAAAATACCCTTG
** ** * * *
86644678 ACTTGTAAAATTACCAAAATACCAT-TGGTTTACAAAATTACCAAAATACCCCTG
1 GTTTACAAAATTACCAAAATACCCTGTGG-GT--AAAATTACCAAAATACCCTTG
** *
86644732 GTTTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTA
1 GTTTACAAAATTACCAAAATACCC-TGT-GGGTAAAATTA
86644772 TTGAAATACC
Statistics
Matches: 212, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
51 1 0.00
52 1 0.00
53 4 0.02
54 198 0.93
55 4 0.02
56 2 0.01
57 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (52 bp):
GTTTACAAAATTACCAAAATACCCTGTGGGTAAAATTACCAAAATACCCTTG
Found at i:86644770 original size:27 final size:27
Alignment explanation
Indices: 86644740--86644881 Score: 167
Period size: 27 Copynumber: 5.3 Consensus size: 27
86644730 TGGTTTGTAA
*
86644740 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** *
86644767 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
86644794 AGTTACCGAAATACCCTTGTATGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
86644821 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * * *
86644848 AATTACTGAGATACCCTTCTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
86644875 AATTACC
1 AATTACC
86644882 ATTTTGCCTC
Statistics
Matches: 94, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:86644779 original size:54 final size:55
Alignment explanation
Indices: 86644682--86644853 Score: 156
Period size: 54 Copynumber: 3.2 Consensus size: 55
86644672 CCCTCGACTT
* ** * * **
86644682 GTAAAATTACCAAAATACCATTG--GTTTACAAAATTACCAAAATACCCCTGGT-TT
1 GTAAAATTACCAAAATACCCTTGTAGGGTA-GAAA-TACCGAAATACCCCTGGTAGG
* **
86644736 GTAAAATTACCAAAATACCCTTGTAGGGTAGAATTATTGAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGGTAGG
* * * *
86644790 GTAGAGTTACCGAAATACCCTTGTATGGTAGAAATACCGAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGGTAGG
*
86644844 GTAGAATTAC
1 GTAAAATTAC
86644854 TGAGATACCC
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
53 2 0.02
54 90 0.93
55 2 0.02
56 3 0.03
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (55 bp):
GTAAAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGGTAGG
Found at i:86644881 original size:81 final size:81
Alignment explanation
Indices: 86644711--86644882 Score: 204
Period size: 81 Copynumber: 2.1 Consensus size: 81
86644701 ATTGGTTTAC
* * *
86644711 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTATTGA
1 AAAATTACCAAAATACCCCTGGTTGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACTGA
*
86644776 AATACCCCTGTAGGGT
66 AATACCCCTCTAGGGT
* * * * *
86644792 AGAGTTACCGAAATA-CCCTTGTATGGTAGAAA-TACCGAAATACCCCTGTAGGGTAGAATTACT
1 AAAATTACCAAAATACCCCTGGT-TGGTA-AAATTACCAAAATACCCCTGTAGGGTAGAATTACT
* * *
86644855 GAGATACCCTTCTGGGGT
64 GAAATACCCCTCTAGGGT
86644873 AAAATTACCA
1 AAAATTACCA
86644883 TTTTGCCTCT
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 6 0.08
81 65 0.88
82 3 0.04
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTGGTTGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACTGA
AATACCCCTCTAGGGT
Found at i:86645132 original size:24 final size:24
Alignment explanation
Indices: 86645086--86645157 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 24
86645076 AGGAAGTGCG
*
86645086 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAAGGCTTTGCCCCAG-TTATCA
*
86645111 AAAAAGGCTTTGCCCCAGTTATTA
1 AAAAAGGCTTTGCCCCAGTTATCA
* **
86645135 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAAAGGCTTTGCC-CCAGTTAT
86645158 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
24 16 0.39
25 25 0.61
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTATCA
Found at i:86649649 original size:25 final size:25
Alignment explanation
Indices: 86649615--86649663 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
86649605 TAGGGTTACC
86649615 GATTTATAGCTCGTGAGAGCATACT
1 GATTTATAGCTCGTGAGAGCATACT
86649640 GATTTATAGCTCGTGAGAGCATAC
1 GATTTATAGCTCGTGAGAGCATAC
86649664 CGATCTTCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (25 bp):
GATTTATAGCTCGTGAGAGCATACT
Found at i:86649675 original size:25 final size:25
Alignment explanation
Indices: 86649611--86649676 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
86649601 TCATTAGGGT
*
86649611 TACCGATTTATAGCTCGTGAGAGCA
1 TACCGATTTACAGCTCGTGAGAGCA
* *
86649636 TACTGATTTATAGCTCGTGAGAGCA
1 TACCGATTTACAGCTCGTGAGAGCA
86649661 TACCGATCTT-CAGCTC
1 TACCGAT-TTACAGCTC
86649677 AAATGAGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 35 0.95
26 2 0.05
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (25 bp):
TACCGATTTACAGCTCGTGAGAGCA
Found at i:86649684 original size:25 final size:25
Alignment explanation
Indices: 86649656--86649713 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
86649646 TAGCTCGTGA
*
86649656 GAGCATACCGA-TCTTCAGCTCAAAT
1 GAGCATACCGATTC-ACAGCTCAAAT
* *
86649681 GAGCATGCCGATTCACAGCTCATAT
1 GAGCATACCGATTCACAGCTCAAAT
86649706 GAGCATAC
1 GAGCATAC
86649714 ATGTACATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 26 0.93
26 2 0.07
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (25 bp):
GAGCATACCGATTCACAGCTCAAAT
Found at i:86652745 original size:39 final size:39
Alignment explanation
Indices: 86652678--86652856 Score: 218
Period size: 39 Copynumber: 4.5 Consensus size: 39
86652668 ACAAAGCATG
* *
86652678 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TTAA-CCCGGATATAACACCAGCACGAAAGCCTT
*
86652718 CGGGACTTTAACCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAACCCGGATATAACACCAGCACGAAAGCCTT
* *
86652758 CGGGGCTTAACCTGGATATAACACCAGCACGAATA-CCTT
1 CGGGACTTAACCCGGATATAACACCAGCACGAA-AGCCTT
* * *
86652797 CGGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAACCCGGATATAACACCAGCACGAAAGCCTT
* *
86652836 CAGGACTTAGCCCGGATATAA
1 CGGGACTTAACCCGGATATAA
86652857 TTCTCCATTA
Statistics
Matches: 123, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 101 0.82
40 22 0.18
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.19
Consensus pattern (39 bp):
CGGGACTTAACCCGGATATAACACCAGCACGAAAGCCTT
Found at i:86653384 original size:110 final size:110
Alignment explanation
Indices: 86653191--86653410 Score: 413
Period size: 110 Copynumber: 2.0 Consensus size: 110
86653181 TGTGGATAGG
* *
86653191 CTACTCGATTGCTTTCTCCTTTCCCCTATCTGATTTAGTTCCTCTTTTCTCTTGAGCTTTAAACT
1 CTACTCGATTGCTTTATCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAACT
86653256 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
*
86653301 CTACTCGATTGCTTTATCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAATT
1 CTACTCGATTGCTTTATCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAACT
86653366 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
66 TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
86653411 AATAGTCACA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 107 1.00
ACGTcount: A:0.24, C:0.22, G:0.08, T:0.46
Consensus pattern (110 bp):
CTACTCGATTGCTTTATCCTTTCCCCTATCTGATTTAGTTCCTCTTTGCTCTTGAGCTTTAAACT
TAAACAAATGAATTTGTTTAATTACTTACTCAACTTTAATTCTAT
Found at i:86655315 original size:40 final size:40
Alignment explanation
Indices: 86655241--86655412 Score: 224
Period size: 40 Copynumber: 4.3 Consensus size: 40
86655231 GATAACCGAA
* * *
86655241 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
* * * *
86655281 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGG
* *
86655321 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCTGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
86655361 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
86655400 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
86655413 ATACTTGGGT
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 96 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
Found at i:86655680 original size:22 final size:22
Alignment explanation
Indices: 86655640--86655681 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
86655630 GAATGTGCAT
*
86655640 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
86655662 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
86655682 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:86660931 original size:54 final size:54
Alignment explanation
Indices: 86660840--86661276 Score: 439
Period size: 54 Copynumber: 8.1 Consensus size: 54
86660830 GGTCGTTAAG
* ** * * *
86660840 ACCCCGGTTTGTAAAATTACTAAAATACCTTC-GGTTTGTAAAATTATCGAAAT
1 ACCCCAGTTTGTAAAATTACCGAAATACCCTCTGATTTGTAAAATTATCAAAAT
*
86660893 ACCTTCAGTTTGTAAAATTACCGAAATACCCTCTG-TTTGTAAAATTATCAAAAT
1 ACC-CCAGTTTGTAAAATTACCGAAATACCCTCTGATTTGTAAAATTATCAAAAT
* * *
86660947 ACCCCTGATTTGTAAAATTACCAAAATACCC-CT-AGTTTGTAAAATTACCAAAAT
1 ACCCCAG-TTTGTAAAATTACCGAAATACCCTCTGA-TTTGTAAAATTATCAAAAT
*
86661001 ACACCCAGTTTGTAAAATTACCGAAATACCC-CTTGATTTGTAAAATTACCAAAAT
1 AC-CCCAGTTTGTAAAATTACCGAAATACCCTC-TGATTTGTAAAATTATCAAAAT
* * * * **
86661056 TCCCCTAGTTTGTAAAATTACTGAAATACCCTC-GAATTATAAAATTATTGAAAT
1 ACCCC-AGTTTGTAAAATTACCGAAATACCCTCTGATTTGTAAAATTATCAAAAT
** *
86661110 ACCCTCAGTTTGTAAAATTATTGAAATA-CCTCCGATTTGTAAAATTA-CTAAAAT
1 ACCC-CAGTTTGTAAAATTACCGAAATACCCTCTGATTTGTAAAATTATC-AAAAT
* * *
86661164 ACCCCCAGTTTGTAAAATTATCGAAATACCC-CCGATTTGTAAAATTATCGAAAT
1 A-CCCCAGTTTGTAAAATTACCGAAATACCCTCTGATTTGTAAAATTATCAAAAT
* * * *
86661218 ACCCCTA-TAGTGTAAAATTATCGAAATACCCT-T-ATAGTGTAAAATTACCAAAAT
1 ACCCC-AGT-TTGTAAAATTACCGAAATACCCTCTGAT-TTGTAAAATTATCAAAAT
86661272 ACCCC
1 ACCCC
86661277 TGTAGGGTAA
Statistics
Matches: 332, Mismatches: 32, Indels: 39
0.82 0.08 0.10
Matches are distributed among these distances:
53 18 0.05
54 255 0.77
55 57 0.17
56 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
ACCCCAGTTTGTAAAATTACCGAAATACCCTCTGATTTGTAAAATTATCAAAAT
Found at i:86660984 original size:81 final size:81
Alignment explanation
Indices: 86660846--86661278 Score: 443
Period size: 81 Copynumber: 5.3 Consensus size: 81
86660836 TAAGACCCCG
* * *
86660846 GTTTGTAAAATTA-CTAAAATA-CCTTCGGTTTGTAAAATTATCGAAATA-CCTTCAGTTTGTAA
1 GTTTGTAAAATTATC-AAAATACCCCT-GATTTGTAAAATTATCGAAATACCCCT-AGTTTGTAA
*
86660908 AATTACCGAAATACCCTCT
63 AATTACCGAAATACCCTCA
* *
86660927 GTTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAAT
1 GTTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAAT
*
86660992 TACCAAAATACACC-CA
66 TACCGAAATAC-CCTCA
* * * * *
86661008 GTTTGTAAAATTACCGAAATACCCCTTGATTTGTAAAATTACCAAAATTCCCCTAGTTTGTAAAA
1 GTTTGTAAAATTATCAAAATACCCC-TGATTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAA
*
86661073 TTACTGAAATACCCTC-
65 TTACCGAAATACCCTCA
* * ** * * *
86661089 GAATTATAAAATTATTGAAATA-CCCTCAGTTTGTAAAATTATTGAAATACCTCCGA-TTTGTAA
1 G-TTTGTAAAATTATCAAAATACCCCTGA-TTTGTAAAATTATCGAAATACC-CCTAGTTTGTAA
** *
86661152 AATTACTAAAATACCCCCA
63 AATTACCGAAATACCCTCA
* * *
86661171 GTTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCCTA-TAGTGTAAAA
1 GTTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCGAAATACCCCTAGT-TTGTAAAA
* *
86661235 TTATCGAAATACCCTTA
65 TTACCGAAATACCCTCA
* *
86661252 -TAGTGTAAAATTACCAAAATACCCCTG
1 GT-TTGTAAAATTATCAAAATACCCCTG
86661279 TAGGGTAAAA
Statistics
Matches: 298, Mismatches: 41, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
80 7 0.02
81 209 0.70
82 82 0.28
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
GTTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAAT
TACCGAAATACCCTCA
Found at i:86661231 original size:27 final size:26
Alignment explanation
Indices: 86660874--86661277 Score: 359
Period size: 27 Copynumber: 15.0 Consensus size: 26
86660864 ATACCTTCGG
*
86660874 TTTGTAAAATTATCGAAATA-CCTTCA
1 TTTGTAAAATTATCGAAATACCCCT-A
* *
86660900 GTTTGTAAAATTACCGAAATACCCTCTG
1 -TTTGTAAAATTATCGAAATACCC-CTA
*
86660928 TTTGTAAAATTATCAAAATACCCCTGA
1 TTTGTAAAATTATCGAAATACCCCT-A
* *
86660955 TTTGTAAAATTACCAAAATACCCCTA
1 TTTGTAAAATTATCGAAATACCCCTA
* *
86660981 GTTTGTAAAATTACCAAAATACACCC-A
1 -TTTGTAAAATTATCGAAATAC-CCCTA
*
86661008 GTTTGTAAAATTACCGAAATACCCCTTGA
1 -TTTGTAAAATTATCGAAATACCCC-T-A
* * *
86661037 TTTGTAAAATTACCAAAATTCCCCTA
1 TTTGTAAAATTATCGAAATACCCCTA
*
86661063 GTTTGTAAAATTA-CTGAAATACCCTCGA
1 -TTTGTAAAATTATC-GAAATACCC-CTA
* * *
86661091 ATTATAAAATTATTGAAATA-CCCTCA
1 TTTGTAAAATTATCGAAATACCCCT-A
* *
86661117 GTTTGTAAAATTATTGAAATACCTCCGA
1 -TTTGTAAAATTATCGAAATACC-CCTA
* *
86661145 TTTGTAAAATTA-CTAAAATACCCCCA
1 TTTGTAAAATTATC-GAAATACCCCTA
*
86661171 GTTTGTAAAATTATCGAAATACCCCCGA
1 -TTTGTAAAATTATCGAAATA-CCCCTA
86661199 TTTGTAAAATTATCGAAATACCCCTA
1 TTTGTAAAATTATCGAAATACCCCTA
* *
86661225 TAGTGTAAAATTATCGAAATACCCTTA
1 T-TTGTAAAATTATCGAAATACCCCTA
* * *
86661252 TAGTGTAAAATTACCAAAATACCCCT
1 T-TTGTAAAATTATCGAAATACCCCT
86661278 GTAGGGTAAA
Statistics
Matches: 325, Mismatches: 31, Indels: 42
0.82 0.08 0.11
Matches are distributed among these distances:
25 1 0.00
26 20 0.06
27 263 0.81
28 37 0.11
29 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (26 bp):
TTTGTAAAATTATCGAAATACCCCTA
Found at i:86661286 original size:27 final size:27
Alignment explanation
Indices: 86660840--86661289 Score: 318
Period size: 27 Copynumber: 16.7 Consensus size: 27
86660830 GGTCGTTAAG
* **
86660840 ACCCCGGT-TTGTAAAATTACTAAAAT
1 ACCCCTGTATTGTAAAATTACCGAAAT
* * *
86660866 ACCTTCGGT-TTGTAAAATTATCGAAAT
1 ACC-CCTGTATTGTAAAATTACCGAAAT
* *
86660893 ACCTTCAGT-TTGTAAAATTACCGAAAT
1 ACC-CCTGTATTGTAAAATTACCGAAAT
* *
86660920 ACCCTCTGT-TTGTAAAATTATCAAAAT
1 ACCC-CTGTATTGTAAAATTACCGAAAT
*
86660947 ACCCCTG-ATTTGTAAAATTACCAAAAT
1 ACCCCTGTA-TTGTAAAATTACCGAAAT
*
86660974 ACCCCTAGT-TTGTAAAATTACCAAAAT
1 ACCCCT-GTATTGTAAAATTACCGAAAT
*
86661001 ACACCCAGT-TTGTAAAATTACCGAAAT
1 AC-CCCTGTATTGTAAAATTACCGAAAT
*
86661028 ACCCCT-TGATTTGTAAAATTACCAAAAT
1 ACCCCTGT-A-TTGTAAAATTACCGAAAT
* *
86661056 TCCCCTAGT-TTGTAAAATTACTGAAAT
1 ACCCCT-GTATTGTAAAATTACCGAAAT
* * **
86661083 A-CCCTCGAATTATAAAATTATTGAAAT
1 ACCCCT-GTATTGTAAAATTACCGAAAT
* **
86661110 ACCCTCAGT-TTGTAAAATTATTGAAAT
1 ACCC-CTGTATTGTAAAATTACCGAAAT
**
86661137 ACCTCC-G-ATTTGTAAAATTACTAAAAT
1 ACC-CCTGTA-TTGTAAAATTACCGAAAT
* *
86661164 ACCCCCAGT-TTGTAAAATTATCGAAAT
1 A-CCCCTGTATTGTAAAATTACCGAAAT
* *
86661191 ACCCCCG-ATTTGTAAAATTATCGAAAT
1 ACCCCTGTA-TTGTAAAATTACCGAAAT
* * *
86661218 ACCCCTATAGTGTAAAATTATCGAAAT
1 ACCCCTGTATTGTAAAATTACCGAAAT
* * * *
86661245 ACCCTTATAGTGTAAAATTACCAAAAT
1 ACCCCTGTATTGTAAAATTACCGAAAT
**
86661272 ACCCCTGTAGGGTAAAAT
1 ACCCCTGTATTGTAAAAT
86661290 GACAGTTTTG
Statistics
Matches: 359, Mismatches: 41, Indels: 47
0.80 0.09 0.11
Matches are distributed among these distances:
25 1 0.00
26 20 0.06
27 302 0.84
28 34 0.09
29 1 0.00
30 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
ACCCCTGTATTGTAAAATTACCGAAAT
Found at i:86661733 original size:27 final size:27
Alignment explanation
Indices: 86661683--86661771 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
86661673 GCTATCTTGA
* **
86661683 CTATGGCTTTGTGCCAATTGTATTTAC
1 CTATGGCTATGTGCCAATCATATTTAC
*
86661710 CTATGGCTATGTGCCTATCATATTTA-
1 CTATGGCTATGTGCCAATCATATTTAC
* * * * *
86661736 TTGATGACTCTGTGTCGATCATATTTAC
1 CT-ATGGCTATGTGCCAATCATATTTAC
*
86661764 CCATGGCT
1 CTATGGCT
86661772 GTGTATTGAT
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 1 0.02
27 47 0.98
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.42
Consensus pattern (27 bp):
CTATGGCTATGTGCCAATCATATTTAC
Found at i:86662126 original size:27 final size:27
Alignment explanation
Indices: 86662067--86662126 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
86662057 AGATAGGCTA
* *
86662067 GGCCCAATTGATTCTGTTATGGGCTGT
1 GGCCCAAATGATTCTGTAATGGGCTGT
* *
86662094 GACCCAAATGATAT-TGTAATGGGCTTT
1 GGCCCAAATGAT-TCTGTAATGGGCTGT
86662121 GGCCCA
1 GGCCCA
86662127 TGTAAGCTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.32
Consensus pattern (27 bp):
GGCCCAAATGATTCTGTAATGGGCTGT
Found at i:86665289 original size:60 final size:60
Alignment explanation
Indices: 86665201--86665337 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 60
86665191 CAGAGTTAAG
* * * * *
86665201 TGGGCCTTAGCCCATATCAATTTTAATCTGGGCCATAACC-CCTTAC-AGTTTTAGAATATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTAGGCCATAACCGCATTACAAG-TTGAG-ATATAT
* * * *
86665262 TGGGCCTAGCCCATATCAGTATCAATCTAGGCCGTAGCCGTATTACAAGTTGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTAGGCCATAACCGCATTACAAGTTGAGATATAT
*
86665322 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
86665338 TAACACAGTT
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
60 48 0.75
61 14 0.22
62 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTAGGCCATAACCGCATTACAAGTTGAGATATAT
Found at i:86665355 original size:20 final size:20
Alignment explanation
Indices: 86665330--86665375 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
86665320 ATTGGGCCTT
86665330 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
86665350 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
86665369 GCCCATA
1 GCCCATA
86665376 ACAAAATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:86666416 original size:36 final size:37
Alignment explanation
Indices: 86666369--86666468 Score: 184
Period size: 36 Copynumber: 2.7 Consensus size: 37
86666359 GCTCAGACGA
*
86666369 AATCTCCACACGAAGTCATCGGGTCTTACCCGGA-AT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
86666405 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
86666442 AATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
86666469 TAGAGCTCGG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
36 33 0.53
37 29 0.47
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:86666658 original size:47 final size:47
Alignment explanation
Indices: 86666587--86667336 Score: 1203
Period size: 47 Copynumber: 15.7 Consensus size: 47
86666577 CCCTTTGGGA
* * * * * *
86666587 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86666634 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86666681 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86666728 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86666775 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86666822 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86666869 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86666916 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86666963 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
86667012 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
86667059 CTTATCACATATATATACACTTTTACATTCATCACATTAGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86667108 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86667155 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86667206 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86667255 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86667302 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
86667337 AGAATCCTAA
Statistics
Matches: 661, Mismatches: 34, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
47 482 0.73
49 133 0.20
51 46 0.07
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86673734 original size:25 final size:25
Alignment explanation
Indices: 86673700--86673757 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
86673690 TCATGTACAT
*
86673700 GTATGCTCATTCGAGCTG-TGAGTCG
1 GTATGCTCATTCGAGCTGAAGA-TCG
*
86673725 GTATGCTCATTTGAGCTGAAGATCG
1 GTATGCTCATTCGAGCTGAAGATCG
86673750 GTATGCTC
1 GTATGCTC
86673758 TCACAAGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 28 0.93
26 2 0.07
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (25 bp):
GTATGCTCATTCGAGCTGAAGATCG
Found at i:86688250 original size:21 final size:20
Alignment explanation
Indices: 86688226--86688264 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
86688216 TTGTATAACT
*
86688226 ATCATCAAACATTCAAAATCA
1 ATCATCAAA-AATCAAAATCA
*
86688247 ATCATTAAAAATCAAAAT
1 ATCATCAAAAATCAAAAT
86688265 ATTGATGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (20 bp):
ATCATCAAAAATCAAAATCA
Found at i:86688252 original size:14 final size:14
Alignment explanation
Indices: 86688229--86688262 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
86688219 TATAACTATC
*
86688229 ATCAAACATTCAAA
1 ATCAAACATTAAAA
*
86688243 ATCAATCATTAAAA
1 ATCAAACATTAAAA
86688257 ATCAAA
1 ATCAAA
86688263 ATATTGATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.59, C:0.18, G:0.00, T:0.24
Consensus pattern (14 bp):
ATCAAACATTAAAA
Found at i:86697835 original size:50 final size:50
Alignment explanation
Indices: 86697781--86698017 Score: 330
Period size: 50 Copynumber: 4.7 Consensus size: 50
86697771 CTGGTATGCA
* *
86697781 TAGTAGCCTACACTTAGTACTACACATGCGACCTAATAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * *
86697831 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * * * *
86697881 TAGTAGCCTACACTTAGTACTACACGTGTGATCAAAGCTATCGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAA-CAATCTGGTACACG
* *
86697932 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
*
86697982 TAGTAGCCTACACTTAGTACTACACACGTGACCTAA
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAA
86698018 AACCGTCTTA
Statistics
Matches: 160, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
50 120 0.75
51 40 0.25
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
Found at i:86697955 original size:101 final size:100
Alignment explanation
Indices: 86697781--86698007 Score: 321
Period size: 101 Copynumber: 2.3 Consensus size: 100
86697771 CTGGTATGCA
* * *
86697781 TAGTAGCCTACACTTAGTACTACACATGCGACCTAATAATCTGGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAAATAATCGGGTACACATAGTAGCCTACACTT
* *
86697846 AGTACTACACACGTGACCTAACCATCTGATACACG
66 AGTACTACACACGCGACCTAACAATCTGATACACG
* * * * *
86697881 TAGTAGCCTACACTTAGTACTACACGTGTGATCAAAGCT-ATCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAAA--TAATCGGGTACACATAGTAGCCTACAC
* *
86697945 TTAGTACTACACATGCGACCTAACAATCTGGTACACG
64 TTAGTACTACACACGCGACCTAACAATCTGATACACG
86697982 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
86698008 CGTGACCTAA
Statistics
Matches: 112, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
100 32 0.29
101 79 0.71
102 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (100 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACCAAATAATCGGGTACACATAGTAGCCTACACTT
AGTACTACACACGCGACCTAACAATCTGATACACG
Found at i:86700803 original size:9 final size:9
Alignment explanation
Indices: 86700789--86700816 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
86700779 AATAGAGACT
86700789 AAATTGTAA
1 AAATTGTAA
86700798 AAATTGTAA
1 AAATTGTAA
86700807 AAATTGTAA
1 AAATTGTAA
86700816 A
1 A
86700817 TGTCAGGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (9 bp):
AAATTGTAA
Found at i:86704354 original size:325 final size:325
Alignment explanation
Indices: 86703764--86704401 Score: 1168
Period size: 325 Copynumber: 2.0 Consensus size: 325
86703754 TGGAGACTAG
*
86703764 GATCTCAAGGTGTCCAACATTCATAAAGACACGAAATTCCTCGAACCTGATGAGCAAAAATTCAG
1 GATCTCAAGATGTCCAACATTCATAAAGACACGAAATTCCTCGAACCTGATGAGCAAAAATTCAG
*
86703829 TACATACCAGCATGATTTACATATCTCGTCAAATATTTAGCAATAAGCTACATGACATTTTTCTC
66 TACATACCAGCATGATTTACATATCTCGTCAAATATTTAACAATAAGCTACATGACATTTTTCTC
* *
86703894 TTTCAAATAAAGGGATGATCCTGATAGGGCCTTGAGGATAATTCTTTCTCATTTTCCATCCTAAT
131 TTTCAAAGAAAGGGATGATCCTGATAGGGCCTTGAGGATAATCCTTTCTCATTTTCCATCCTAAT
* *
86703959 GTCAATACTAGTAGAGATAACTCTGGTAGAACCTGATGCTCAGCTTTAACCCCATTAACATTTCA
196 GTCAATACTAGCAGAGATAACTCTAGTAGAACCTGATGCTCAGCTTTAACCCCATTAACATTTCA
*
86704024 AAATATTTTTACACAAGAATCATACAATAACCATATTTTCATCTTTTAATACCATATGAAACCCA
261 AAATATTTTTACACAAGAATCATACAATAACCATATTATCATCTTTTAATACCATATGAAACCCA
86704089 GATCTCAAGATGTCCAACATTCATAAAGACACGAAATTCCTCGAACCTGATGAGCAAAAATTCAG
1 GATCTCAAGATGTCCAACATTCATAAAGACACGAAATTCCTCGAACCTGATGAGCAAAAATTCAG
*
86704154 TACATACCAGCATGATTTACATATCTCGTCAAATATTTAACAATAAGCTACATTACATTTTTCTC
66 TACATACCAGCATGATTTACATATCTCGTCAAATATTTAACAATAAGCTACATGACATTTTTCTC
*
86704219 TTTCAAAGACAGGGATGATCCTGATAGGGCCTTGAGGATAATCCTTTCTCATTTTCCATCCTAAT
131 TTTCAAAGAAAGGGATGATCCTGATAGGGCCTTGAGGATAATCCTTTCTCATTTTCCATCCTAAT
* *
86704284 GTCAATACTGGCAGAGATAACTCTAGTAGAACCTGATGCTCGGCTTTAACCCCATTAACATTTCA
196 GTCAATACTAGCAGAGATAACTCTAGTAGAACCTGATGCTCAGCTTTAACCCCATTAACATTTCA
*
86704349 AAATATTTTTACACAAGAATCATACAATAACCATCTTATCATCTTTTAATACC
261 AAATATTTTTACACAAGAATCATACAATAACCATATTATCATCTTTTAATACC
86704402 CAAGTCATTT
Statistics
Matches: 301, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
325 301 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (325 bp):
GATCTCAAGATGTCCAACATTCATAAAGACACGAAATTCCTCGAACCTGATGAGCAAAAATTCAG
TACATACCAGCATGATTTACATATCTCGTCAAATATTTAACAATAAGCTACATGACATTTTTCTC
TTTCAAAGAAAGGGATGATCCTGATAGGGCCTTGAGGATAATCCTTTCTCATTTTCCATCCTAAT
GTCAATACTAGCAGAGATAACTCTAGTAGAACCTGATGCTCAGCTTTAACCCCATTAACATTTCA
AAATATTTTTACACAAGAATCATACAATAACCATATTATCATCTTTTAATACCATATGAAACCCA
Found at i:86704873 original size:15 final size:14
Alignment explanation
Indices: 86704855--86704909 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 14
86704845 TCCATAACGG
86704855 AGAAATCCAAAATA
1 AGAAATCCAAAATA
**
86704869 TAGAAATCCATCATAA
1 -AGAAATCCAAAAT-A
*
86704885 AGAAATCCAAAACA
1 AGAAATCCAAAATA
86704899 AGAAAATCCAA
1 AG-AAATCCAA
86704910 TCAACTTGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
14 3 0.09
15 29 0.88
16 1 0.03
ACGTcount: A:0.60, C:0.18, G:0.07, T:0.15
Consensus pattern (14 bp):
AGAAATCCAAAATA
Found at i:86706228 original size:38 final size:38
Alignment explanation
Indices: 86706156--86706263 Score: 117
Period size: 38 Copynumber: 2.8 Consensus size: 38
86706146 GGCACGAAGG
* * * * *
86706156 CCCGAATATAATACCAGCACTAGGCTTGCAGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
86706194 CCCTAATATAATACCAGTACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
* ** *
86706232 CCCGGATATTTTACCAGCATGAAGCCTGCGGG
1 CCCGAATATAATACCAGCACGAAGCCTGCGGG
86706264 TCTTTAAGCC
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:86718413 original size:74 final size:74
Alignment explanation
Indices: 86718287--86718440 Score: 238
Period size: 74 Copynumber: 2.1 Consensus size: 74
86718277 CTTAGTACTA
* *
86718287 CACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGTACTTAGCACTACACATGCAACCCAA
1 CACACGTGATCGAAGCTATCAGGTACGCATAGTAGCCTGGACTTAGCACTACACATGCAACCCAA
86718352 CAATCTGGT
66 CAATCTGGT
* * * * *
86718361 CACATGTGATCGAAGCTATCAGGTAGGCATAGTAGCCTGGACTTAGTACTACACATGCGACCTAA
1 CACACGTGATCGAAGCTATCAGGTACGCATAGTAGCCTGGACTTAGCACTACACATGCAACCCAA
86718426 CAATCTGGT
66 CAATCTGGT
86718435 -ACACGT
1 CACACGT
86718441 AGTAGCCTAC
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
73 5 0.07
74 67 0.93
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (74 bp):
CACACGTGATCGAAGCTATCAGGTACGCATAGTAGCCTGGACTTAGCACTACACATGCAACCCAA
CAATCTGGT
Found at i:86718448 original size:50 final size:50
Alignment explanation
Indices: 86718388--86718519 Score: 149
Period size: 50 Copynumber: 2.6 Consensus size: 50
86718378 ATCAGGTAGG
* **
86718388 CATAGTAGCCTGGACTTAGTACTACACATGCGACCTAACAA-TCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-AACTCTGAAACA
* * * * *
86718438 CGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACCGTCTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAAA-C-TCTGAAACA
*
86718490 CATAGTAGCCTGCACATAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
86718520 TGTTCTCACA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
49 2 0.03
50 33 0.49
52 32 0.48
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.23
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAAACTCTGAAACA
Found at i:86722044 original size:48 final size:48
Alignment explanation
Indices: 86721992--86722272 Score: 303
Period size: 48 Copynumber: 5.8 Consensus size: 48
86721982 TATGAAATCT
** * *
86721992 CATATCAGTACTGATGCCATGTCCCAGACATGGTTTTACATTGGCTCA
1 CATATCAACACTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
* * * *
86722040 CATATCAACGCAGATGCCATATCCCAGACATGGTCCTACACTGGCTCA
1 CATATCAACACTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
* * *
86722088 TATATGAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
1 CATATCAACACTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
* * * * *
86722136 CATATCAACGCCGATGCTATGTCCTAGACATGGTCTTACATTGGCTCA
1 CATATCAACACTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
* ** * ** * *
86722184 CATATTAATGCTGATACCATGTATCAGACTATAGTCTTACACTAGCTCA
1 CATATCAACACTGATGCCATGTCCCAGAC-ATGGTCTTACACTGGCTCA
* *
86722233 CATATCAAC-GTCGATGCCATGTCTCAGACATGGTCTTACA
1 CATATCAACACT-GATGCCATGTCCCAGACATGGTCTTACA
86722273 TGGGTTCTCA
Statistics
Matches: 194, Mismatches: 37, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
48 156 0.80
49 38 0.20
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (48 bp):
CATATCAACACTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
Found at i:86722105 original size:96 final size:95
Alignment explanation
Indices: 86722004--86722272 Score: 340
Period size: 96 Copynumber: 2.8 Consensus size: 95
86721994 TATCAGTACT
* * *
86722004 GATGCCATGTCCCAGACATGGTTTTACATTGGCTCACATATCAACGCAGATGCCATATCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGC-GATGCCATGTCCCAGAC
* *
86722069 ATGGTCCTACACTGGCTCATATATGAACACC
65 ATGGTCTTACACTGGCTCACATATGAACACC
* *
86722100 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCCGATGCTATGTCCTAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACG-CGATGCCATGTCCCAGAC
* * ** *
86722165 ATGGTCTTACATTGGCTCACATATTAATGCT
65 ATGGTCTTACACTGGCTCACATATGAACACC
* ** * * *
86722196 GATACCATGTATCAGACTATAGTCTTACACTAGCTCACATATCAACGTCGATGCCATGTCTCAGA
1 GATGCCATGTCCCAGAC-ATGGTCTTACACTGGCTCACATATCAACG-CGATGCCATGTCCCAGA
86722261 CATGGTCTTACA
64 CATGGTCTTACA
86722273 TGGGTTCTCA
Statistics
Matches: 150, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
96 96 0.64
97 54 0.36
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCACATATGAACACC
Found at i:86722175 original size:144 final size:145
Alignment explanation
Indices: 86722004--86722272 Score: 369
Period size: 144 Copynumber: 1.9 Consensus size: 145
86721994 TATCAGTACT
* * *
86722004 GATGCCATGTCCCAGACATGGTTTTACATTGGCTCACATATCAACGCAGATGCCATATCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATATCAACGCAGATACCATATACCAGAC
* * * *
86722069 -ATGGTCCTACACTGGCTCATATATGAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGC
66 TATAGTCCTACACTAGCTCACATATCAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGC
86722133 TCACATATCAACGCC
131 TCACATATCAACGCC
* * * * * * *
86722148 GATGCTATGTCCTAGACATGGTCTTACATTGGCTCACATATTAATGCTGATACCATGTATCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATATCAACGCAGATACCATATACCAGAC
* ** *
86722213 TATAGTCTTACACTAGCTCACATATCAACGTCGATGCCATGTCTCAGACATGGTCTTACA
66 TATAGTCCTACACTAGCTCACATATCAACACCGATGCCATGTCCCAGACATGGTCTTACA
86722273 TGGGTTCTCA
Statistics
Matches: 106, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
144 55 0.52
145 51 0.48
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (145 bp):
GATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATATCAACGCAGATACCATATACCAGAC
TATAGTCCTACACTAGCTCACATATCAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGC
TCACATATCAACGCC
Found at i:86744668 original size:52 final size:52
Alignment explanation
Indices: 86744590--86744696 Score: 214
Period size: 52 Copynumber: 2.1 Consensus size: 52
86744580 TAATGCAATG
86744590 ATCGTGCAAAAAGCCAAAAACTTTACTTTAGAAAACAGACAGTCAATAATCA
1 ATCGTGCAAAAAGCCAAAAACTTTACTTTAGAAAACAGACAGTCAATAATCA
86744642 ATCGTGCAAAAAGCCAAAAACTTTACTTTAGAAAACAGACAGTCAATAATCA
1 ATCGTGCAAAAAGCCAAAAACTTTACTTTAGAAAACAGACAGTCAATAATCA
86744694 ATC
1 ATC
86744697 ATACATGTTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.48, C:0.20, G:0.11, T:0.21
Consensus pattern (52 bp):
ATCGTGCAAAAAGCCAAAAACTTTACTTTAGAAAACAGACAGTCAATAATCA
Found at i:86750266 original size:48 final size:50
Alignment explanation
Indices: 86750161--86750267 Score: 116
Period size: 45 Copynumber: 2.2 Consensus size: 50
86750151 TGTTATGATT
* * * *
86750161 TTTATTAATTTATATTTTAATAAAAATTATATTAAGAATGTTATTAAATTA
1 TTTATT-ATTTTTATTTTAATAAAAATTATATTAAAAATATGATTAAATTA
* *
86750212 --TA-TATTTTTATTTTTAT-TAAATTATA-TAAAAATATGATTAAATTA
1 TTTATTATTTTTATTTTAATAAAAATTATATTAAAAATATGATTAAATTA
86750257 TTTATTATTTT
1 TTTATTATTTT
86750268 AATAATAATC
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
45 16 0.34
46 8 0.17
47 14 0.30
48 7 0.15
49 2 0.04
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (50 bp):
TTTATTATTTTTATTTTAATAAAAATTATATTAAAAATATGATTAAATTA
Found at i:86752426 original size:39 final size:39
Alignment explanation
Indices: 86752222--86752444 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
86752212 TTGAATGCTG
* * * * * *
86752222 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
86752262 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
86752302 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
86752342 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
86752382 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
86752421 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
86752445 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 109 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:86752464 original size:79 final size:80
Alignment explanation
Indices: 86752297--86752479 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
86752287 GTGCGAGATA
* * *
86752297 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
86752362 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * *
86752377 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
86752441 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
86752456 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
86752480 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:86760316 original size:39 final size:39
Alignment explanation
Indices: 86760095--86760316 Score: 239
Period size: 40 Copynumber: 5.6 Consensus size: 39
86760085 TTGAATGCTG
* * * * * *
86760095 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
86760135 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
86760175 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
86760215 TCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
86760254 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
86760293 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
86760317 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 74 0.47
40 75 0.47
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:86760340 original size:78 final size:79
Alignment explanation
Indices: 86760170--86760351 Score: 217
Period size: 78 Copynumber: 2.3 Consensus size: 79
86760160 GTGCGAGATA
* * *
86760170 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
**
86760235 CATCGTGCGAGTTG
66 CATCGTGCGAGGAG
* * * *
86760249 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
86760313 CAT-TTGAACGAGGAG
66 CATCGTG--CGAGGAG
* *
86760328 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
86760352 TACGTGATTT
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
77 2 0.02
78 47 0.54
79 38 0.44
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATCGTGCGAGGAG
Found at i:86766504 original size:27 final size:26
Alignment explanation
Indices: 86766487--86766556 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
86766477 ATATTAAGTC
86766487 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
86766514 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
86766542 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
86766557 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:86766550 original size:28 final size:28
Alignment explanation
Indices: 86766487--86766584 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
86766477 ATATTAAGTC
*
86766487 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
86766514 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86766542 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
86766571 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86766585 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86767052 original size:14 final size:14
Alignment explanation
Indices: 86767033--86767060 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
86767023 TGGGCATACT
86767033 TATGTATATATATA
1 TATGTATATATATA
86767047 TATGTATATATATA
1 TATGTATATATATA
86767061 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:86772579 original size:50 final size:48
Alignment explanation
Indices: 86772516--86772688 Score: 171
Period size: 50 Copynumber: 3.6 Consensus size: 48
86772506 CATCAAAGTT
86772516 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCGTATATTGAGACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTC-TATA-TGAGACC
* * *
86772566 GATGCCATATCCCAGACATGGTCTTACACTGA--CAC-ATCA--A-CCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTAT-ATGAGACC
** * * *
86772609 GATATCATGTCTCAGACATGGTCTTACACT-AGCTCTCATATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTC-TATAT-GAGACC
86772659 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
86772689 AGCTCTTATA
Statistics
Matches: 100, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 1 0.01
43 28 0.28
44 1 0.01
45 2 0.02
46 2 0.02
47 3 0.03
48 2 0.02
49 1 0.01
50 60 0.60
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTATATGAGACC
Found at i:86776835 original size:55 final size:53
Alignment explanation
Indices: 86776708--86776951 Score: 265
Period size: 55 Copynumber: 4.5 Consensus size: 53
86776698 AACTTACCAT
* * * *
86776708 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGA-CTTTGCCTTATAGAACTCATCAA
* *
86776761 TGCCATGCCTTGGCATGGTCTTACATGGGACATTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGAC-TTTGCCTTATAG-AACTCATCAA
* * *
86776816 TTCCATGTCTTGACATGGTCTTACATGGGTCCTTTGCGTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGG-ACTTTGCCTTATAG-AACTCATCAA
* *** * *
86776871 TGCCATGTCTTGACATGATCTTACATGATTTCGTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATG-GGACTTTGCCTTATAGAACTCATCAA
** *
86776925 TGCCATACCTTGGCATGGTCTTACATG
1 TGCCATGTCTTGACATGGTCTTACATG
86776952 ATATCCTTAT
Statistics
Matches: 163, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
52 1 0.01
53 35 0.21
54 33 0.20
55 93 0.57
56 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGACTTTGCCTTATAGAACTCATCAA
Found at i:86776908 original size:110 final size:106
Alignment explanation
Indices: 86776708--86776959 Score: 292
Period size: 110 Copynumber: 2.3 Consensus size: 106
86776698 AACTTACCAT
*
86776708 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* *
86776773 GCATGGTCTTACATGGGACATTTGCCTTATAGTAACTCATCAA
66 ACATGATCTTACAT-GGACATTTGCCTTATAG-AACTCATCAA
* * * * *
86776816 TTCCATGTCTTGACATGGTCTTACATGG-GTCCTTTGCGTTATAGTAACTCATCAATGCCATGTC
1 TGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCC
** *
86776880 TTGACATGATCTTACAT-GATTTCGTTGCCTTATAGAACTTATCAA
63 TTGACATGATCTTACATGGACAT--TTGCCTTATAGAACTCATCAA
** * *
86776925 TGCCATACCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
86776960 ATCTTACCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
107 3 0.02
108 37 0.31
109 35 0.29
110 46 0.38
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (106 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
ACATGATCTTACATGGACATTTGCCTTATAGAACTCATCAA
Found at i:86776991 original size:47 final size:47
Alignment explanation
Indices: 86776938--86777071 Score: 214
Period size: 47 Copynumber: 2.8 Consensus size: 47
86776928 CATACCTTGG
* * * *
86776938 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
86776985 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
86777032 CATGGTCTTACATGGTATCCTTGTCTTACCACCAATGCCA
1 CATGGTCTTACATGGTATCCTTGTCTTACCA--AATGCCA
86777072 CATCTTGATG
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 74 0.91
49 7 0.09
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
Found at i:86777134 original size:47 final size:45
Alignment explanation
Indices: 86776922--86777184 Score: 131
Period size: 47 Copynumber: 5.6 Consensus size: 45
86776912 TAGAACTTAT
** * * * *
86776922 CAATGCCATACCTTGGCATGGTCTTACATGATATCCTTATC-TTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGAGATCCTT-GCAATAC
* *** *
86776967 CAAATGTCATGTTCCAAACATGGTCTTACATG-GTATCCTTGTC-TTAC
1 C-AATGCCATG-TCTTGACATGGTCTTACATGAG-ATCCTTG-CAATAC
*** **
86777014 CAAATGCCATGGTCCAAACATGGTCTTACATG-GTATCCTTGTCTTACCAC
1 C-AATGCCAT-GTCTTGACATGGTCTTACATGAG-ATCCTTG-C--AATAC
** ** * *
86777064 CAATGCCACATCTTGATGTGGTCTTACATG-GATTCCTTAATCAATGC
1 CAATGCCATGTCTTGACATGGTCTTACATGAGA-TCCTT--GCAATAC
* * **
86777111 CGATGCCATGTCTTGACATGGTCTTACACGAGATCCTTGCCTTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGAGATCCTTGCAATAC
86777156 CAATGCCATGTCTTGACATGGTCTTACAT
1 CAATGCCATGTCTTGACATGGTCTTACAT
86777185 TGTATCCTTA
Statistics
Matches: 171, Mismatches: 35, Indels: 24
0.74 0.15 0.10
Matches are distributed among these distances:
45 31 0.18
46 7 0.04
47 98 0.57
48 24 0.14
49 8 0.05
50 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.33
Consensus pattern (45 bp):
CAATGCCATGTCTTGACATGGTCTTACATGAGATCCTTGCAATAC
Found at i:86788642 original size:46 final size:46
Alignment explanation
Indices: 86788590--86788855 Score: 242
Period size: 46 Copynumber: 5.7 Consensus size: 46
86788580 ATTTAGGCAA
86788590 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGT
* * * * *
86788636 CCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAATTAGGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGA--A--CGT
* *
86788683 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGT
* * *
86788729 CCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G--T
* * * *
86788776 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGT
* *
86788821 CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTAT
1 CC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
86788856 TGGCGGGTTA
Statistics
Matches: 177, Mismatches: 26, Indels: 34
0.75 0.11 0.14
Matches are distributed among these distances:
42 3 0.02
43 10 0.06
45 8 0.05
46 85 0.48
47 54 0.31
48 6 0.03
50 9 0.05
51 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGT
Found at i:86788745 original size:93 final size:93
Alignment explanation
Indices: 86788582--86788850 Score: 432
Period size: 93 Copynumber: 2.9 Consensus size: 93
86788572 ATTCGGATAT
* * *
86788582 TTAGGCAACCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCGAACTCATT
1 TTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTT
86788647 GAGTTGAGTCCGAGTTCGTGAGATGTAA
66 GAGTTGAGTCCGAGTTCGTGAGATGTAA
*
86788675 TTAGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTT
1 TTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTT
*
86788740 AAGTTGAGTCCGAGTTCGTGAGATGTAA
66 GAGTTGAGTCCGAGTTCGTGAGATGTAA
* * * * *
86788768 CTAGGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGT
1 TTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGT
86788832 TGAGTTGAGTCCGAGTTCG
65 TGAGTTGAGTCCGAGTTCG
86788851 CTTATTGGCG
Statistics
Matches: 163, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
92 2 0.01
93 161 0.99
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
TTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTT
GAGTTGAGTCCGAGTTCGTGAGATGTAA
Found at i:86795525 original size:28 final size:29
Alignment explanation
Indices: 86795460--86795558 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
86795450 CATGAGATTG
* *
86795460 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
86795489 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
86795517 GCACTAAGTGTGCGA-GTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
86795545 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86795559 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
27 4 0.06
28 42 0.66
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:86803704 original size:28 final size:28
Alignment explanation
Indices: 86803641--86803791 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
86803631 ATATTAAGTC
*
86803641 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
86803668 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
86803696 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
86803724 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86803752 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
86803781 CGCACACTTAG
1 CGCACACTTAG
86803792 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.19
28 76 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86806798 original size:28 final size:29
Alignment explanation
Indices: 86806733--86806831 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
86806723 CATGAGATTG
* *
86806733 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
86806762 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
86806790 GCACTAAGTGTGCGA-GTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
86806818 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86806832 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
27 4 0.06
28 42 0.66
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:86829224 original size:978 final size:978
Alignment explanation
Indices: 86827328--86829237 Score: 3811
Period size: 978 Copynumber: 2.0 Consensus size: 978
86827318 CCGTGTCTCA
86827328 GGCCGTGTACACTTAAATAAACCTTAAACATCAAGTTTACTATTTCAAGAATTCTTGGGCACTGA
1 GGCCGTGTACACTTAAATAAACCTTAAACATCAAGTTTACTATTTCAAGAATTCTTGGGCACTGA
86827393 GTAACCCATTTACCAGCCATTGGGCCTATTCAAAATGTCATTAAACAAGCTCAAATCATGCTAAT
66 GTAACCCATTTACCAGCCATTGGGCCTATTCAAAATGTCATTAAACAAGCTCAAATCATGCTAAT
86827458 TCAACCATCTTAAGTGCCTAACCAATGGTACCACAAGTATACACTTATACAACAATATAAATCAT
131 TCAACCATCTTAAGTGCCTAACCAATGGTACCACAAGTATACACTTATACAACAATATAAATCAT
86827523 CACCCAAACATGCCAATTCACACAACTTAAACTTCTAACCAATATGCCTATCATAGGCACCCCAA
196 CACCCAAACATGCCAATTCACACAACTTAAACTTCTAACCAATATGCCTATCATAGGCACCCCAA
86827588 TTCACAACATTTCAATATAATCTATTAATCATAGATATGCTAAAAGTTTATACCAAAGACATCTT
261 TTCACAACATTTCAATATAATCTATTAATCATAGATATGCTAAAAGTTTATACCAAAGACATCTT
86827653 CCATCATTCACATATATCACAATAAGTTATCAACTTGCACTTAGGCTCACTCTTTATATATTTAC
326 CCATCATTCACATATATCACAATAAGTTATCAACTTGCACTTAGGCTCACTCTTTATATATTTAC
86827718 ATACTAAACAAAAGTAATGACAAAACAAGCTTATTATATGCCATATAATCCAAAACAAACATTCA
391 ATACTAAACAAAAGTAATGACAAAACAAGCTTATTATATGCCATATAATCCAAAACAAACATTCA
86827783 AAAACTATCGAAAATTGATGGATAGTGTGGCTTGAGTGCTGATTCGATCGTCCAACTTTCAAAAG
456 AAAACTATCGAAAATTGATGGATAGTGTGGCTTGAGTGCTGATTCGATCGTCCAACTTTCAAAAG
*
86827848 CATCTACAAGAAACAGAAAGTAACACAAGTAAGCTTATTGAAGCTTAGTGAGTTTGACGGACAGA
521 CATCTACAAGAAACAGAAAGTAACACAAGTAAGCTTATTGAAGCTTAGTGAGTTCGACGGACAGA
86827913 AACAATAATTCTTACAGAAATAAATTTAACCATCAAATAAAAAAATGATTCAACAACAAATATTT
586 AACAATAATTCTTACAGAAATAAATTTAACCATCAAATAAAAAAATGATTCAACAACAAATATTT
86827978 CCTGTCATCCACAATTACAAACTGGTGATTGTCATATTTCAATTCAAAGTTCAAATAATATTCTC
651 CCTGTCATCCACAATTACAAACTGGTGATTGTCATATTTCAATTCAAAGTTCAAATAATATTCTC
86828043 CGGTAACATACATGTCCACAACAGAGTCTATTCTAGATGTCAAGTACGTGTCATGCCATTCAAAG
716 CGGTAACATACATGTCCACAACAGAGTCTATTCTAGATGTCAAGTACGTGTCATGCCATTCAAAG
86828108 TCATTAAACAAGTTATAATACAATAATTTATGACCTGATGAATGACTTATAGATATGAGTACACA
781 TCATTAAACAAGTTATAATACAATAATTTATGACCTGATGAATGACTTATAGATATGAGTACACA
86828173 AGTAGTCCAACCGAAACATGAAAACGCTCATGAGAGCTAATCCAATCGATAACACGCCTCAACAC
846 AGTAGTCCAACCGAAACATGAAAACGCTCATGAGAGCTAATCCAATCGATAACACGCCTCAACAC
86828238 TAAATGCCTAGCCCGTAGGTTAGACACGGGCTACCACATGGCCATGTGCCACACACGGTCTAAGA
911 TAAATGCCTAGCCCGTAGGTTAGACACGGGCTACCACATGGCCATGTGCCACACACGGTCTAAGA
86828303 CAC
976 CAC
86828306 GGCCGTGTACACTTAAATAAACCTTAAACATCAAGTTTACTATTTCAAGAATTCTTGGGCACTGA
1 GGCCGTGTACACTTAAATAAACCTTAAACATCAAGTTTACTATTTCAAGAATTCTTGGGCACTGA
86828371 GTAACCCATTTACCAGCCATTGGGCCTATTCAAAATGTCATTAAACAAGCTCAAATCATGCTAAT
66 GTAACCCATTTACCAGCCATTGGGCCTATTCAAAATGTCATTAAACAAGCTCAAATCATGCTAAT
86828436 TCAACCATCTTAAGTGCCTAACCAATGGTACCACAAGTATACACTTATACAACAATATAAATCAT
131 TCAACCATCTTAAGTGCCTAACCAATGGTACCACAAGTATACACTTATACAACAATATAAATCAT
86828501 CACCCAAACATGCCAATTCACACAACTTAAACTTCTAACCAATATGCCTATCATAGGCACCCCAA
196 CACCCAAACATGCCAATTCACACAACTTAAACTTCTAACCAATATGCCTATCATAGGCACCCCAA
86828566 TTCACAACATTTCAATATAATCTATTAATCATAGATATGCTAAAAGTTTATACCAAAGACATCTT
261 TTCACAACATTTCAATATAATCTATTAATCATAGATATGCTAAAAGTTTATACCAAAGACATCTT
86828631 CCATCATTCACATATATCACAATAAGTTATCAACTTGCACTTAGGCTCACTCTTTATATATTTAC
326 CCATCATTCACATATATCACAATAAGTTATCAACTTGCACTTAGGCTCACTCTTTATATATTTAC
86828696 ATACTAAACAAAAGTAATGACAAAACAAGCTTATTATATGCCATATAATCCAAAACAAACATTCA
391 ATACTAAACAAAAGTAATGACAAAACAAGCTTATTATATGCCATATAATCCAAAACAAACATTCA
86828761 AAAACTATCGAAAATTGATGGATAGTGTGGCTTGAGTGCTGATTCGATCGTCCAACTTTCAAAAG
456 AAAACTATCGAAAATTGATGGATAGTGTGGCTTGAGTGCTGATTCGATCGTCCAACTTTCAAAAG
86828826 CATCTACAAGAAACAGAAAGTAACACAAGTAAGCTTATTGAAGCTTAGTGAGTTCGACGGACAGA
521 CATCTACAAGAAACAGAAAGTAACACAAGTAAGCTTATTGAAGCTTAGTGAGTTCGACGGACAGA
86828891 AACAATAATTCTTACAGAAATAAATTTAACCATCAAATAAAAAAATGATTCAACAACAAATATTT
586 AACAATAATTCTTACAGAAATAAATTTAACCATCAAATAAAAAAATGATTCAACAACAAATATTT
86828956 CCTGTCATCCACAATTACAAACTGGTGATTGTCATATTTCAATTCAAAGTTCAAATAATATTCTC
651 CCTGTCATCCACAATTACAAACTGGTGATTGTCATATTTCAATTCAAAGTTCAAATAATATTCTC
86829021 CGGTAACATACATGTCCACAACAGAGTCTATTCTAGATGTCAAGTACGTGTCATGCCATTCAAAG
716 CGGTAACATACATGTCCACAACAGAGTCTATTCTAGATGTCAAGTACGTGTCATGCCATTCAAAG
86829086 TCATTAAACAAGTTATAATACAATAATTTATGACCTGATGAATGACTTATAGATATGAGTACACA
781 TCATTAAACAAGTTATAATACAATAATTTATGACCTGATGAATGACTTATAGATATGAGTACACA
86829151 AGTAGTCCAACCGAAACATGAAAACGCTCATGAGAGCTAATCCAATCGATAACACGCCTCAACAC
846 AGTAGTCCAACCGAAACATGAAAACGCTCATGAGAGCTAATCCAATCGATAACACGCCTCAACAC
86829216 TAAATGCCTAGCCCGTAGGTTA
911 TAAATGCCTAGCCCGTAGGTTA
86829238 TACATCCACC
Statistics
Matches: 931, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
978 931 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (978 bp):
GGCCGTGTACACTTAAATAAACCTTAAACATCAAGTTTACTATTTCAAGAATTCTTGGGCACTGA
GTAACCCATTTACCAGCCATTGGGCCTATTCAAAATGTCATTAAACAAGCTCAAATCATGCTAAT
TCAACCATCTTAAGTGCCTAACCAATGGTACCACAAGTATACACTTATACAACAATATAAATCAT
CACCCAAACATGCCAATTCACACAACTTAAACTTCTAACCAATATGCCTATCATAGGCACCCCAA
TTCACAACATTTCAATATAATCTATTAATCATAGATATGCTAAAAGTTTATACCAAAGACATCTT
CCATCATTCACATATATCACAATAAGTTATCAACTTGCACTTAGGCTCACTCTTTATATATTTAC
ATACTAAACAAAAGTAATGACAAAACAAGCTTATTATATGCCATATAATCCAAAACAAACATTCA
AAAACTATCGAAAATTGATGGATAGTGTGGCTTGAGTGCTGATTCGATCGTCCAACTTTCAAAAG
CATCTACAAGAAACAGAAAGTAACACAAGTAAGCTTATTGAAGCTTAGTGAGTTCGACGGACAGA
AACAATAATTCTTACAGAAATAAATTTAACCATCAAATAAAAAAATGATTCAACAACAAATATTT
CCTGTCATCCACAATTACAAACTGGTGATTGTCATATTTCAATTCAAAGTTCAAATAATATTCTC
CGGTAACATACATGTCCACAACAGAGTCTATTCTAGATGTCAAGTACGTGTCATGCCATTCAAAG
TCATTAAACAAGTTATAATACAATAATTTATGACCTGATGAATGACTTATAGATATGAGTACACA
AGTAGTCCAACCGAAACATGAAAACGCTCATGAGAGCTAATCCAATCGATAACACGCCTCAACAC
TAAATGCCTAGCCCGTAGGTTAGACACGGGCTACCACATGGCCATGTGCCACACACGGTCTAAGA
CAC
Found at i:86830191 original size:11 final size:11
Alignment explanation
Indices: 86830176--86830205 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
86830166 TTTATTCTTC
86830176 ATTTAATTTTG
1 ATTTAATTTTG
*
86830187 TTTTAATTTTG
1 ATTTAATTTTG
86830198 ATTTAATT
1 ATTTAATT
86830206 ACAAATTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (11 bp):
ATTTAATTTTG
Found at i:86830585 original size:22 final size:22
Alignment explanation
Indices: 86830557--86830605 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
86830547 TTATACTTTG
86830557 CTCCCTAAGTTGTGATATCAAA
1 CTCCCTAAGTTGTGATATCAAA
*
86830579 CTCCCTAAGTTGTGATATCGAA
1 CTCCCTAAGTTGTGATATCAAA
86830601 CTCCC
1 CTCCC
86830606 CATATTGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.31
Consensus pattern (22 bp):
CTCCCTAAGTTGTGATATCAAA
Found at i:86836268 original size:207 final size:207
Alignment explanation
Indices: 86835984--86836428 Score: 649
Period size: 207 Copynumber: 2.1 Consensus size: 207
86835974 GTCCAACTAG
* * * * *
86835984 ATATTATTGAATTTACTAATACATACTTCATCCGGATAAGTATGTATTATTAAAATTAAATTAAA
1 ATATTACTGAATCTGCTAATACATACTTCATACGGATAAGTATGCATTATTAAAATTAAATTAAA
* * * * *
86836049 ATATTAAATAAGAAATTATATTATAAAACAATATGTTATTTGAAAAATAATAATTATTGTAATGA
66 ATATTAAATAAGAAATAAAATTATAAAACAATATATTAGTTGAAAAATAACAATTATTGTAATGA
* ** *
86836114 GATACATGTTTTATTAGGTATAAGTATTTAAAATTTTATTTTTGTAATGTGATATATGCGTAAAT
131 GATACATGATTTATTAAATATAAGTATTTAAAATTTTATTTTTGTAATGTGATACATGCGTAAAT
*
86836179 ATATATATAATT
196 ATATATATAATC
* *
86836191 GTATTACTGAATCTGCTAATACATATTTCATACGGATAAAGTATGCATTATTAAAATTAAATTAA
1 ATATTACTGAATCTGCTAATACATACTTCATACGGAT-AAGTATGCATTATTAAAATTAAATTAA
* * *
86836256 AA-ATTAAATAAGAAATAAAATTATAATATAATATATTAGTTGGAAAATAACAATTATTGTAATG
65 AATATTAAATAAGAAATAAAATTATAAAACAATATATTAGTTGAAAAATAACAATTATTGTAATG
* *
86836320 AGATACATGATTTATTAAATATAAGTATTTAAAATTTTGTTTTTGTAATGTGATACATGCGTAAT
130 AGATACATGATTTATTAAATATAAGTATTTAAAATTTTATTTTTGTAATGTGATACATGCGTAAA
86836385 TATATATATAATC
195 TATATATATAATC
* * *
86836398 ATATTAGTGAATCTGGTAATACATACATCAT
1 ATATTACTGAATCTGCTAATACATACTTCAT
86836429 CTGGATGAAG
Statistics
Matches: 210, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
207 182 0.87
208 28 0.13
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (207 bp):
ATATTACTGAATCTGCTAATACATACTTCATACGGATAAGTATGCATTATTAAAATTAAATTAAA
ATATTAAATAAGAAATAAAATTATAAAACAATATATTAGTTGAAAAATAACAATTATTGTAATGA
GATACATGATTTATTAAATATAAGTATTTAAAATTTTATTTTTGTAATGTGATACATGCGTAAAT
ATATATATAATC
Found at i:86836951 original size:61 final size:61
Alignment explanation
Indices: 86836856--86836976 Score: 206
Period size: 61 Copynumber: 2.0 Consensus size: 61
86836846 AATGGACTTG
* * *
86836856 GATTAAGGTTTGTTTTATTTGTTGATGAGTATTGAGTCATTTTATTGTCAATTGGGGTTTA
1 GATTAAGGTGTGTTTTATTTGTTGATGAGTATTGAGTCATCTTATTGTCAATTGGAGTTTA
*
86836917 GATTAAGGTGTGTTTTATTTGTTGATGAGTATTGAGTCATCTTATTGTCGATTGGAGTTT
1 GATTAAGGTGTGTTTTATTTGTTGATGAGTATTGAGTCATCTTATTGTCAATTGGAGTTT
86836977 GATAGGTTGA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.21, C:0.04, G:0.26, T:0.50
Consensus pattern (61 bp):
GATTAAGGTGTGTTTTATTTGTTGATGAGTATTGAGTCATCTTATTGTCAATTGGAGTTTA
Found at i:86837537 original size:34 final size:35
Alignment explanation
Indices: 86837471--86837544 Score: 116
Period size: 34 Copynumber: 2.1 Consensus size: 35
86837461 ATCCTACTTG
86837471 AATATGTCAAATTTAGGAAAAATAAGTCAATGCAA
1 AATATGTCAAATTTAGGAAAAATAAGTCAATGCAA
*
86837506 AATATGTCAAATTTA-GAAAAATAGGAT-AATGCAA
1 AATATGTCAAATTTAGGAAAAATAAG-TCAATGCAA
86837540 AATAT
1 AATAT
86837545 ATGATGCATA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
34 21 0.57
35 16 0.43
ACGTcount: A:0.53, C:0.07, G:0.14, T:0.27
Consensus pattern (35 bp):
AATATGTCAAATTTAGGAAAAATAAGTCAATGCAA
Found at i:86838091 original size:16 final size:15
Alignment explanation
Indices: 86838063--86838103 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
86838053 ATTCTTCAAG
*
86838063 AATTTTTGA-AAAAT
1 AATTTTTTATAAAAT
86838077 AATTATTTTATAAAAT
1 AATT-TTTTATAAAAT
86838093 AATTTTTTATA
1 AATTTTTTATA
86838104 TAAAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 11 0.46
16 9 0.38
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
AATTTTTTATAAAAT
Found at i:86838091 original size:17 final size:18
Alignment explanation
Indices: 86838071--86838112 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
86838061 AGAATTTTTG
86838071 AAAAATAATTATTT-TAT
1 AAAAATAATTATTTATAT
*
86838088 -AAAATAATTTTTTATAT
1 AAAAATAATTATTTATAT
86838105 AAAAATAA
1 AAAAATAA
86838113 ATGGACCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 12 0.55
17 3 0.14
18 7 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAAAATAATTATTTATAT
Found at i:86838433 original size:14 final size:15
Alignment explanation
Indices: 86838398--86838453 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
86838388 TTTGATAAAC
* *
86838398 TGAAAAATCAAATAC
1 TGAAAAATTAAATAT
*
86838413 TGAAAAATTAAATGT
1 TGAAAAATTAAATAT
*
86838428 TGAAAAAATAAATAT
1 TGAAAAATTAAATAT
86838443 TGAAAAATTAA
1 TGAAAAATTAA
86838454 GTACTAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.61, C:0.04, G:0.09, T:0.27
Consensus pattern (15 bp):
TGAAAAATTAAATAT
Found at i:86844554 original size:42 final size:43
Alignment explanation
Indices: 86844495--86844657 Score: 161
Period size: 42 Copynumber: 3.8 Consensus size: 43
86844485 AGGGTTATGT
* *
86844495 GTGATTTTGTGTAAGACCATATTTGGGATATGGCATCGATAC-
1 GTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATACA
* * *
86844537 GTGATTTCGTGTAAGACCATGTCTGCGACATGGCATCGATACA
1 GTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATACA
* * * *
86844580 G-GATATCGTGT-AGACCATAACTGGGCTATCGGCATCGATATA
1 GTGATTTCGTGTAAGACCATATCTGGGATAT-GGCATCGATACA
* ** * * *
86844622 TTGATCCCATGTAAAATCATATCTGGGATATGGCAT
1 GTGATTTCGTGTAAGACCATATCTGGGATATGGCAT
86844658 TGGCATCTTA
Statistics
Matches: 97, Mismatches: 20, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
41 13 0.13
42 57 0.59
43 13 0.13
44 14 0.14
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
GTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATACA
Found at i:86848716 original size:21 final size:21
Alignment explanation
Indices: 86848691--86848733 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
86848681 TGAGTTAACC
86848691 TAAAATTATGTATATATCACA
1 TAAAATTATGTATATATCACA
86848712 TAAAATTATGTATATATCACA
1 TAAAATTATGTATATATCACA
86848733 T
1 T
86848734 TTTACATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.40
Consensus pattern (21 bp):
TAAAATTATGTATATATCACA
Found at i:86849872 original size:24 final size:25
Alignment explanation
Indices: 86849841--86849889 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
86849831 ACATCCCTAG
86849841 AATAATCAGAGTTTAA-TTG-AGAA
1 AATAATCAGAGTTTAACTTGTAGAA
86849864 AATATATCAGAGTTTAACTTGTAGAA
1 AATA-ATCAGAGTTTAACTTGTAGAA
86849890 GAAACCTGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.17
24 12 0.52
25 3 0.13
26 4 0.17
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33
Consensus pattern (25 bp):
AATAATCAGAGTTTAACTTGTAGAA
Found at i:86854976 original size:47 final size:46
Alignment explanation
Indices: 86854858--86855086 Score: 174
Period size: 50 Copynumber: 4.7 Consensus size: 46
86854848 ATCTGATACG
* * * * **
86854858 CATAGTAACCTGCACTTAGTACTACACATGAGAC-CAACAATCCAGTA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTAAAC-ATTGA-TA
* *
86854905 CACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATA
1 CA--TAGTAGCCTGCACTTAGTACTACACACGTGA-CTAAACAT-TGATA
* *
86854955 CA-AGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CTAA-ACATTGA-TA
* * * * *
86855003 CGCATAGTAGCCTGCACTTAGTACCACACATGCGACTTAACAGTATGTTA
1 --CATAGTAGCCTGCACTTAGTACTACACACGTGACTAAACA-T-TGATA
86855053 CACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 CA--TAGTAGCCTGCACTTAGTACTACACACGTG
86855087 TACTCACAAT
Statistics
Matches: 148, Mismatches: 20, Indels: 25
0.77 0.10 0.13
Matches are distributed among these distances:
47 37 0.25
48 7 0.05
49 30 0.20
50 41 0.28
51 33 0.22
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (46 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACTAAACATTGATA
Found at i:86860180 original size:68 final size:68
Alignment explanation
Indices: 86860070--86860251 Score: 179
Period size: 68 Copynumber: 2.7 Consensus size: 68
86860060 GGTACATGGC
* * **
86860070 ACCATATTGTGTAAGACCATAGCTAGGCTATGACAACGAATGAAGTTTGCCAGGATAA-TAAACA
1 ACCATATTGTGTAAGACCATAACTAGGCTATAACAAAAAATGAAGTTTGCCAGGA-AATTAAACA
86860134 TGAA
65 TGAA
* * **
86860138 ACCATATTGTGTAAGACCATAA-TTGATCTATAACAAAAAATGAAGTTTGTTAGGAAATTAAACA
1 ACCATATTGTGTAAGACCATAACTAG-GCTATAACAAAAAATGAAGTTTGCCAGGAAATTAAACA
**
86860202 TGGC
65 TGAA
* * * * * * *
86860206 ATCATATTGTGTAAGGCCATAGCTGGGGTATTACAACAAATGAAGT
1 ACCATATTGTGTAAGACCATAACTAGGCTATAACAAAAAATGAAGT
86860252 CCACAAGAAT
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
67 4 0.04
68 87 0.94
69 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.27
Consensus pattern (68 bp):
ACCATATTGTGTAAGACCATAACTAGGCTATAACAAAAAATGAAGTTTGCCAGGAAATTAAACAT
GAA
Found at i:86864374 original size:11 final size:11
Alignment explanation
Indices: 86864354--86864440 Score: 55
Period size: 11 Copynumber: 8.3 Consensus size: 11
86864344 ATAATACGAG
86864354 TAAA-AATATA
1 TAAATAATATA
86864364 -ACAATAATATA
1 TA-AATAATATA
86864375 TAAATAATA-A
1 TAAATAATATA
86864385 TATAA-AATA-A
1 TA-AATAATATA
* *
86864395 T-AATAATTTT
1 TAAATAATATA
86864405 TGAAA-AATA-A
1 T-AAATAATATA
86864415 TAAATAATAATA
1 TAAATAAT-ATA
*
86864427 CAAATAATATA
1 TAAATAATATA
86864438 TAA
1 TAA
86864441 TAGAATAATT
Statistics
Matches: 60, Mismatches: 6, Indels: 21
0.69 0.07 0.24
Matches are distributed among these distances:
8 2 0.03
9 7 0.12
10 16 0.27
11 24 0.40
12 11 0.18
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.32
Consensus pattern (11 bp):
TAAATAATATA
Found at i:86864377 original size:13 final size:12
Alignment explanation
Indices: 86864359--86864400 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
86864349 ACGAGTAAAA
86864359 ATATAACAATAAT
1 ATATAA-AATAAT
86864372 ATAT-AAATAAT
1 ATATAAAATAAT
86864383 AATATAAAATAAT
1 -ATATAAAATAAT
86864396 A-ATAA
1 ATATAA
86864401 TTTTTGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 10 0.37
12 6 0.22
13 11 0.41
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (12 bp):
ATATAAAATAAT
Found at i:86864389 original size:19 final size:19
Alignment explanation
Indices: 86864219--86864474 Score: 65
Period size: 19 Copynumber: 12.9 Consensus size: 19
86864209 TTAAATGATA
* *
86864219 ATAATATATAGATAAAAAAT
1 ATAATATATAAAT-AATAAT
86864239 ATAATAGTATAAA-AATGACAT
1 ATAATA-TATAAATAAT-A-AT
86864260 AATAATATA-AAATAAT--T
1 -ATAATATATAAATAATAAT
86864277 ATAATATATAATATGAAAGTATAT
1 ATAATATATAA-AT--AA-TA-AT
*
86864301 ATGTGAATATAATATATAATACAT
1 A--T-AATAT-ATAAATAATA-AT
*
86864325 ATAA-ATGATTAATAA-ATAT
1 ATAATAT-ATAAATAATA-AT
* * *
86864344 ATAATACGAGTAAAAATATAACA
1 ATAATA-TA-TAAATA-ATAA-T
86864367 ATAATATATAAATAATAAT
1 ATAATATATAAATAATAAT
86864386 ATAA-A-AT-AATAATAAT
1 ATAATATATAAATAATAAT
* *
86864402 -T--TTTGAAAAATAATAA-
1 ATAATAT-ATAAATAATAAT
*
86864418 ATAATAATACAAATAAT-AT
1 ATAAT-ATATAAATAATAAT
* *
86864437 ATAATAGAATAATTATATAAT
1 ATAATA-TATAAATA-ATAAT
*
86864458 ATAAAATATAAA-AATAA
1 ATAATATATAAATAATAA
86864475 GGTAAAAAGA
Statistics
Matches: 176, Mismatches: 25, Indels: 72
0.64 0.09 0.26
Matches are distributed among these distances:
15 1 0.01
16 18 0.10
17 14 0.08
18 9 0.05
19 33 0.19
20 33 0.19
21 31 0.18
22 10 0.06
23 7 0.04
24 7 0.04
25 2 0.01
26 1 0.01
27 7 0.04
28 3 0.02
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (19 bp):
ATAATATATAAATAATAAT
Found at i:86864400 original size:30 final size:30
Alignment explanation
Indices: 86864361--86864474 Score: 83
Period size: 30 Copynumber: 3.7 Consensus size: 30
86864351 GAGTAAAAAT
*
86864361 ATAACAATAATATATAAATAATAATATAAA
1 ATAATAATAATATATAAATAATAATATAAA
* *
86864391 ATAATAATAATTTTTGAAA-AATAATA-AATA
1 ATAATAATAATATAT-AAATAATAATATAA-A
* *
86864421 ATAATACAAATAATATATAATAGAATAATTATATA
1 ATAAT---AATAATATATAA-ATAATAA-TATAAA
*
86864456 AT-ATAA-AATATAAAAATAA
1 ATAATAATAATATATAAATAA
86864475 GGTAAAAAGA
Statistics
Matches: 67, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
29 5 0.07
30 33 0.49
31 5 0.07
32 2 0.03
33 9 0.13
34 7 0.10
35 5 0.07
36 1 0.01
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (30 bp):
ATAATAATAATATATAAATAATAATATAAA
Found at i:86872461 original size:46 final size:48
Alignment explanation
Indices: 86872389--86872491 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
86872379 GACAGGACAG
* * * *
86872389 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
86872435 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
86872483 GACAGGAAT
1 GACAGGAAT
86872492 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:86876787 original size:46 final size:48
Alignment explanation
Indices: 86876715--86876817 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
86876705 GACAGGACAG
* * * *
86876715 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
86876761 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
86876809 GACAGGAAT
1 GACAGGAAT
86876818 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:86881480 original size:40 final size:40
Alignment explanation
Indices: 86881292--86881516 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
86881282 TTGAATGATG
* * * *
86881292 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
86881332 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
86881372 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
**
86881412 TTTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86881451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
86881492 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86881517 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86881498 original size:79 final size:80
Alignment explanation
Indices: 86881292--86881516 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 80
86881282 TTGAATGATG
* * * * *
86881292 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
86881356 TGTGCGAGATACTAAA
65 TGTGCGAGATACTAAA
* * **
86881372 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTTTGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCAT
*
86881434 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * * *
86881451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTT
86881516 G
66 G
86881517 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 67 0.55
80 46 0.38
81 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:86881508 original size:119 final size:120
Alignment explanation
Indices: 86881295--86881516 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
86881285 AATGATGTCC
*
86881295 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTG
86881360 CGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTTT
66 CGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTTT
* * * **
86881415 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTG
* * *
86881477 TGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TGCGAGATACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
86881517 AACGAGGAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
118 2 0.02
119 70 0.79
120 17 0.19
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTG
CGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTTT
Found at i:86881538 original size:79 final size:78
Alignment explanation
Indices: 86881299--86881549 Score: 233
Period size: 79 Copynumber: 3.2 Consensus size: 78
86881289 ATGTCCGGGC
* * * *
86881299 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
86881362 AGATACTAAATCCGGAC
64 AG-GACTAAATCCGG-T
* **
86881379 TAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTTTGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
86881441 AGTTACTAAATCCGGGT
64 AG-GACTAAATCC-GGT
* * **
86881458 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
86881523 GAGCTATATCCGGT
66 GA-CTAAATCCGGT
* *
86881537 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
86881550 TACGTGATTT
Statistics
Matches: 142, Mismatches: 20, Indels: 19
0.78 0.11 0.10
Matches are distributed among these distances:
78 1 0.01
79 80 0.56
80 53 0.37
81 8 0.06
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
GACTAAATCCGGT
Found at i:86889977 original size:13 final size:13
Alignment explanation
Indices: 86889961--86889993 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
86889951 TTTAATTAAA
*
86889961 TTAGTTAATTAGT
1 TTAGATAATTAGT
86889974 TTAGATAATTAGT
1 TTAGATAATTAGT
86889987 TTA-ATAA
1 TTAGATAA
86889994 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:86895643 original size:23 final size:22
Alignment explanation
Indices: 86895600--86895649 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
86895590 TCATGTTTAC
86895600 ATCA-AAACCAAAACATACCAA
1 ATCATAAACCAAAACATACCAA
*
86895621 ATCATAAACCAAAGTCATACCAA
1 ATCATAAACCAAA-ACATACCAA
*
86895644 AACATA
1 ATCATA
86895650 TGATTCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 4 0.16
22 8 0.32
23 13 0.52
ACGTcount: A:0.58, C:0.26, G:0.02, T:0.14
Consensus pattern (22 bp):
ATCATAAACCAAAACATACCAA
Found at i:86896476 original size:44 final size:41
Alignment explanation
Indices: 86896340--86896487 Score: 152
Period size: 42 Copynumber: 3.5 Consensus size: 41
86896330 AATGCTAACA
* *** *
86896340 TCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACAAAATC-AA-ATCGATGCCAATG
* * * *
86896383 TCCCAGACAGGGTCTTACACAAAATCAAATATGATACCGATG
1 TCCCAGACATGGTCTTACACAAAATCAAAT-CGATGCCAATG
86896425 TCCCAGACATGGTCTTACACATAAATTTCAAATCGATGCCAATG
1 TCCCAGACATGGTCTTACACA-AAA--TCAAATCGATGCCAATG
*
86896469 TCCCAGACGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
86896488 TGAAATCACA
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.02
42 29 0.33
43 24 0.28
44 26 0.30
45 6 0.07
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACAAAATCAAATCGATGCCAATG
Found at i:86896514 original size:44 final size:42
Alignment explanation
Indices: 86896340--86896500 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 42
86896330 AATGCTAACA
*
86896340 TCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTG
1 TCCCAGACGTGGTCTTACATGAAATCAAATATCGATGCCA-TG
** *
86896383 TCCCAGACAG-GGTCTTACACAAAATCAAATAT-GATACCGATG
1 TCCCAGAC-GTGGTCTTACATGAAATCAAATATCGATGCC-ATG
*
86896425 TCCCAGACATGGTCTTACACAT-AAATTTC-AA-ATCGATGCCAATG
1 TCCCAGACGTGGTCTT--ACATGAAA--TCAAATATCGATGCC-ATG
*
86896469 TCCCAGACGTGGTCTTACATGAAATCACATAT
1 TCCCAGACGTGGTCTTACATGAAATCAAATAT
86896501 TGGAATCCTA
Statistics
Matches: 97, Mismatches: 10, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
41 2 0.02
42 26 0.27
43 38 0.39
44 29 0.30
45 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACATGAAATCAAATATCGATGCCATG
Found at i:86901135 original size:26 final size:26
Alignment explanation
Indices: 86901106--86901164 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
86901096 ATAAAACCTA
* *
86901106 AAAATGAAATAGTA-TTAAAGGAAGAT
1 AAAATAAAAAAGTACTTAAA-GAAGAT
86901132 AAAATAAAAAAGTACTTAAAGAAGAT
1 AAAATAAAAAAGTACTTAAAGAAGAT
86901158 -AAATAAA
1 AAAATAAA
86901165 GATAAAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 7 0.23
26 18 0.60
27 5 0.17
ACGTcount: A:0.64, C:0.02, G:0.14, T:0.20
Consensus pattern (26 bp):
AAAATAAAAAAGTACTTAAAGAAGAT
Found at i:86902394 original size:19 final size:20
Alignment explanation
Indices: 86902367--86902404 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86902357 GTGGCGCCCA
*
86902367 AGGGTGAGA-AGAGGGGAGG
1 AGGGAGAGAGAGAGGGGAGG
86902386 AGGGAGAGAGAGAGGGGAG
1 AGGGAGAGAGAGAGGGGAG
86902405 AAAAATGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.34, C:0.00, G:0.63, T:0.03
Consensus pattern (20 bp):
AGGGAGAGAGAGAGGGGAGG
Found at i:86907849 original size:37 final size:37
Alignment explanation
Indices: 86907799--86907877 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
86907789 TTATTACGAA
* * *
86907799 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
86907836 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
86907873 GTCTT
1 GTCTT
86907878 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:86908083 original size:47 final size:47
Alignment explanation
Indices: 86908040--86908646 Score: 914
Period size: 47 Copynumber: 13.1 Consensus size: 47
86908030 TTGGCCACTC
* * *
86908040 GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
86908087 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
86908134 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
86908181 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* * *
86908228 GGCCTTATCACACACATACACTTTCACATTCCTCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
86908275 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
86908322 GGCCCTATCACAC-TATACACTTTCACATTCATCACCTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
86908368 GGCC-TATCACACATATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
86908414 GGCCTTAT--CACATATACACTTTCACATTCATCACGTCGG--ATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
86908457 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
** *
86908504 GGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
86908551 GGCC-TATCAC-TATATACACTTTCACATTCATCACATCGGC-ATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* * *
86908595 GGCCTTCA-CATATATATACACTTTCA-ATTCA-CACATCGGCCATTA
1 GGCCTT-ATCACACATATACACTTTCACATTCATCACATCGGCTATTA
86908640 GGCCTTA
1 GGCCTTA
86908647 CTATCATTTC
Statistics
Matches: 534, Mismatches: 16, Indels: 23
0.93 0.03 0.04
Matches are distributed among these distances:
43 12 0.02
44 18 0.03
45 117 0.22
46 93 0.17
47 294 0.55
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
Found at i:86912171 original size:39 final size:39
Alignment explanation
Indices: 86912064--86912188 Score: 139
Period size: 38 Copynumber: 3.3 Consensus size: 39
86912054 ACCACATGAT
** * * *
86912064 TGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAA
1 TGCTCTTCGGGAATTAG-CCGGATATATCACTAGCACGAA
* *
86912104 TGCTCTTCGGG-GTTAGCAGGATATATCACTAGCACGAA
1 TGCTCTTCGGGAATTAGCCGGATATATCACTAGCACGAA
* *
86912142 TGCTCTTCGGGAATTAGCCGGATACATCACTAGCATG-A
1 TGCTCTTCGGGAATTAGCCGGATATATCACTAGCACGAA
86912180 TGC-CTTCGG
1 TGCTCTTCGG
86912189 ACTTGCCCGG
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
37 6 0.08
38 33 0.45
39 24 0.32
40 11 0.15
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (39 bp):
TGCTCTTCGGGAATTAGCCGGATATATCACTAGCACGAA
Found at i:86912551 original size:29 final size:29
Alignment explanation
Indices: 86912504--86912582 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
86912494 CTTAATAATC
*
86912504 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
86912534 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
86912563 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
86912583 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:86912623 original size:42 final size:43
Alignment explanation
Indices: 86912564--86912665 Score: 179
Period size: 43 Copynumber: 2.4 Consensus size: 43
86912554 TGCATTTCAA
86912564 GCCCGCACACTTAGTGCCAATCTCACAA-CGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
86912606 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
**
86912649 GGTCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
86912666 TGAAAACCAA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
42 28 0.49
43 29 0.51
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:86914539 original size:36 final size:37
Alignment explanation
Indices: 86914467--86914544 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
86914457 TTATTACGAA
* *
86914467 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
86914504 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
86914540 GTCTT
1 GTCTT
86914545 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:86914740 original size:44 final size:46
Alignment explanation
Indices: 86914659--86915057 Score: 488
Period size: 46 Copynumber: 8.9 Consensus size: 46
86914649 TTTCGGGACT
* * * * * * * *
86914659 TATCACATTTATGCACTTCCACATCCATTACGT-GGCCACTCGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
86914704 TGTCA-ATATATACAC-TTCACATTCATCACATCGGCCATTAGGCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
86914748 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* * *
86914794 T-TCAC-CATATACACTTTCACATTCATCCACGTCGGCTATTAGG-C
1 TATCACATATATACACTTTCACATTCAT-CACATCGGCCATTAGGCC
*
86914838 TAT--C--ATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
86914880 CATCACACAT-TACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
86914925 T-T-ATCA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCA-CATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
86914969 TTATCACATATAT-CACTTTCACATTCATCACATCGGCCATTAGGCC
1 -TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
86915015 TATACATATATATACACTTTCACATTCATCA-ATCGGCCATTAG
1 TAT-CACATATATACACTTTCACATTCATCACATCGGCCATTAG
86915058 CCTTACTATC
Statistics
Matches: 316, Mismatches: 20, Indels: 35
0.85 0.05 0.09
Matches are distributed among these distances:
41 15 0.05
42 23 0.07
43 16 0.05
44 82 0.26
45 72 0.23
46 86 0.27
47 22 0.07
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (46 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:86914912 original size:131 final size:134
Alignment explanation
Indices: 86914711--86915062 Score: 522
Period size: 131 Copynumber: 2.6 Consensus size: 134
86914701 GCCTGTCAAT
*
86914711 ATATACAC-TTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCACATTCA
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCA
* * * *
86914775 TCACATCGGCTATTAGGCCTTCA-CCATATACACTTTCACATTCATCCACGTCGGCTATTAGG-C
66 TCACATCGGCCATTAGGCCTT-ATCAATATACACTTTCACATTCAT-CACATCGGCCATTAGGCC
86914838 -TAT-C
129 TTATAC
* * *
86914842 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCCATCACACAT-TACACTTTCACATTCA
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCA
86914906 TCACATCGGCCATTAGGCCTTATCAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
66 TCACATCGGCCATTAGGCCTTATCAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
86914971 ATCAC
131 AT-AC
*
86914976 ATATATCACTTTCACATTCATCACATCGGCCATTAGGCCTATACATATATATACACTTTCACATT
1 ATATA-CACTTTCACATTCATCACATCGGCCATTAGGCCTAT-CACATATATACACTTTCACATT
86915041 CATCA-ATCGGCCATTA-GCCTTA
64 CATCACATCGGCCATTAGGCCTTA
86915063 CTATCATTTC
Statistics
Matches: 200, Mismatches: 12, Indels: 14
0.88 0.05 0.06
Matches are distributed among these distances:
130 15 0.08
131 66 0.33
132 38 0.19
134 6 0.03
135 40 0.20
136 16 0.08
137 19 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (134 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
ATAC
Found at i:87018557 original size:47 final size:47
Alignment explanation
Indices: 87018438--87018962 Score: 730
Period size: 47 Copynumber: 11.2 Consensus size: 47
87018428 ACAAGTATAT
* * * *
87018438 TATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTATATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTA
87018485 TATGGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
1 TAT-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
*
87018533 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
*
87018580 TGTGTGATAA-GCCGAATGGCCAATGTGATGAATGTGAACA--TGTA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
*
87018624 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG-CTA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
* * *
87018670 TAT-AGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTATATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTA
87018716 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
1 TAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
* *
87018765 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
* **
87018812 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
*
87018859 TATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-A-GTGTA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
* * *
87018904 TATATTGATAAGGCCGAATGGCCAATGTGATGGATGTGGA-A-GTGTA
1 TAT-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
87018950 TAAATGTGATAAG
1 T--ATGTGATAAG
87018963 TCCCGAAGGG
Statistics
Matches: 439, Mismatches: 25, Indels: 28
0.89 0.05 0.06
Matches are distributed among these distances:
44 14 0.03
45 71 0.16
46 80 0.18
47 190 0.43
48 42 0.10
49 41 0.09
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
Found at i:87021790 original size:40 final size:40
Alignment explanation
Indices: 87021515--87021778 Score: 402
Period size: 40 Copynumber: 6.6 Consensus size: 40
87021505 CTCGACGATG
*
87021515 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* *
87021555 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* * *
87021595 ATCCGGGCTAAGTCCTGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
87021635 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
87021675 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* ** * *
87021715 ATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
87021755 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAGAGCA
87021779 ATCATGCTGG
Statistics
Matches: 206, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 206 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:87025319 original size:47 final size:47
Alignment explanation
Indices: 87025267--87025802 Score: 785
Period size: 47 Copynumber: 11.3 Consensus size: 47
87025257 TGTACAAGTA
* * *
87025267 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
87025314 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
87025363 TGTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
*
87025410 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
87025457 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
87025504 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
87025553 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
*
87025600 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
87025647 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
*
87025694 TATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
87025741 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
87025788 TATAAATGTGATAAG
1 TATATATGTGATAAG
87025803 TCCCGAAGGG
Statistics
Matches: 454, Mismatches: 26, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
46 2 0.00
47 366 0.81
48 3 0.01
49 81 0.18
50 2 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:87025420 original size:25 final size:25
Alignment explanation
Indices: 87025344--87025421 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
87025334 GAATGGCCAA
*
87025344 TGTGATGAATGTGAACATGTGTATG
1 TGTGATGAATGTGAACATGTATATG
* *** *
87025369 TGTGAT-AAGGCTG-A-ATGGCCA-A
1 TGTGATGAATG-TGAACATGTATATG
87025391 TGTGATGAATGTGAACATGTATATG
1 TGTGATGAATGTGAACATGTATATG
87025416 TGTGAT
1 TGTGAT
87025422 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.29, C:0.06, G:0.31, T:0.33
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGTATATG
Found at i:87025591 original size:190 final size:190
Alignment explanation
Indices: 87025268--87025781 Score: 917
Period size: 190 Copynumber: 2.7 Consensus size: 190
87025258 GTACAAGTAT
* * *
87025268 ATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGC
*
87025333 CGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCTGAATGGCCAATGTGATG
66 CGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
87025398 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
131 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
87025458 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGC
87025523 CGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
66 CGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
87025588 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
131 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
87025648 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT--GAGATAAGGC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGC
* *
87025711 CGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
66 CGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGAT
*
87025775 GGATGTG
130 GAATGTG
87025782 GAAGTGTATA
Statistics
Matches: 314, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
187 1 0.00
188 75 0.24
190 238 0.76
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (190 bp):
ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGC
CGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:87030735 original size:39 final size:39
Alignment explanation
Indices: 87030661--87030884 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 39
87030651 GCTACTCGTT
*
87030661 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
87030701 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
87030740 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* *
87030779 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
87030819 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
87030860 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
87030885 CATCATTCAA
Statistics
Matches: 165, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 71 0.43
40 83 0.50
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:87030804 original size:79 final size:79
Alignment explanation
Indices: 87030661--87030884 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 79
87030651 GCTACTCGTT
*
87030661 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
87030726 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
* * **
87030740 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCG
*
87030803 GATTTAGTATCTCGCA
64 GATTTAGTAACTCGCA
* * * * * *
87030819 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCC
87030882 GGA
63 GGA
87030885 CATCATTCAA
Statistics
Matches: 126, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 36 0.29
79 47 0.37
80 30 0.24
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:87037257 original size:19 final size:19
Alignment explanation
Indices: 87037233--87037271 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
87037223 AATCAATGAG
87037233 TTAGTCACATAACAAAACA
1 TTAGTCACATAACAAAACA
87037252 TTAGTCACATAACAAAACA
1 TTAGTCACATAACAAAACA
87037271 T
1 T
87037272 CATATAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.21, G:0.05, T:0.23
Consensus pattern (19 bp):
TTAGTCACATAACAAAACA
Found at i:87046274 original size:5 final size:5
Alignment explanation
Indices: 87046264--87046307 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
87046254 TTTTTCTTGC
*
87046264 AATTT AATTT AATTT AATTT AATTAT TATTT -A-TT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATT-T AATTT AATTT AATTT AATTT
87046308 TCTTTCTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 27 0.77
6 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
AATTT
Done.