Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 271 of 325
Found at i:87056728 original size:18 final size:18
Alignment explanation
Indices: 87056705--87056740 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
87056695 AAGACCTAGT
87056705 TGCATGACTTATATCTAA
1 TGCATGACTTATATCTAA
87056723 TGCATGACTTATATCTAA
1 TGCATGACTTATATCTAA
87056741 ACTACAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (18 bp):
TGCATGACTTATATCTAA
Found at i:87059499 original size:37 final size:37
Alignment explanation
Indices: 87059446--87059548 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
87059436 CGAATAGTCC
*
87059446 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
87059483 CCACATGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
87059520 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
87059549 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:87059775 original size:48 final size:48
Alignment explanation
Indices: 87059721--87060077 Score: 606
Period size: 48 Copynumber: 7.4 Consensus size: 48
87059711 GCCAAATCAC
* *
87059721 TAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
87059769 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAGAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
87059817 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
87059865 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAG
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
87059913 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
87059961 TAGCCATTCGGCTTTACCGCATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
87060009 TAGCAATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
87060057 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
87060078 CACATATATA
Statistics
Matches: 291, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 291 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:87072762 original size:13 final size:13
Alignment explanation
Indices: 87072744--87072768 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87072734 GGACGGAAAC
87072744 ACGACCGTGCAAT
1 ACGACCGTGCAAT
87072757 ACGACCGTGCAA
1 ACGACCGTGCAA
87072769 AAATAGGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.12
Consensus pattern (13 bp):
ACGACCGTGCAAT
Found at i:87079408 original size:13 final size:13
Alignment explanation
Indices: 87079390--87079414 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87079380 CCTGGCACAA
87079390 GCCCGTGTCCATG
1 GCCCGTGTCCATG
87079403 GCCCGTGTCCAT
1 GCCCGTGTCCAT
87079415 TACACGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCATG
Found at i:87081881 original size:17 final size:17
Alignment explanation
Indices: 87081840--87081881 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
87081830 CAAAAAACCA
87081840 AAAATAAA-AAAATAAT
1 AAAATAAATAAAATAAT
**
87081856 AAACCAAATAAAATAAT
1 AAAATAAATAAAATAAT
87081873 AAAATAAAT
1 AAAATAAAT
87081882 TATTTATGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAATAAATAAAATAAT
Found at i:87097858 original size:46 final size:45
Alignment explanation
Indices: 87097791--87097965 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
87097781 TGTAACCCGC
* * *
87097791 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
87097837 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
87097883 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGG-CATTCGCAT
* *
87097930 CCATAAATGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
87097966 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 63 0.59
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:87097927 original size:93 final size:93
Alignment explanation
Indices: 87097798--87097970 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
87097788 CGCCCATAAG
* * * *
87097798 CGAACTCAGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCAGACTCAACTCA
87097863 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
87097891 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAATGAACTCAGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAATGAACTCAGACTCAACTC
*
87097955 AACGAGTTCGGATGCC
65 AACGAGCTCGGATGCC
87097971 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:87099919 original size:29 final size:29
Alignment explanation
Indices: 87099880--87099967 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
87099870 CAAAGATAAC
*
87099880 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
87099909 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
87099938 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
87099968 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:87099938 original size:15 final size:15
Alignment explanation
Indices: 87099880--87099958 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
87099870 CAAAGATAAC
*
87099880 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
87099894 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
87099909 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
87099923 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
87099938 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
87099953 AAGAAA
1 AAGAAA
87099959 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:87099967 original size:15 final size:15
Alignment explanation
Indices: 87099891--87099967 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
87099881 AGAAAACCGA
87099891 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
87099906 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
87099920 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
87099934 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
87099950 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
87099965 ATA
1 ATA
87099968 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:87103006 original size:93 final size:93
Alignment explanation
Indices: 87102879--87103051 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
87102869 CGCCCATAAG
* * *
87102879 CGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCAAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAAACTCAACTCA
*
87102944 ATGAGCTCAGATGCCTAGTTACATCTCT
66 ACGAGCTCAGATGCCTAGTTACATCTCT
* **
87102972 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAAACTCAACTCA
* *
87103037 ACGAGTTCGGATGCC
66 ACGAGCTCAGATGCC
87103052 CAAATATCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAAACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCT
Found at i:87103029 original size:46 final size:46
Alignment explanation
Indices: 87102880--87103047 Score: 153
Period size: 46 Copynumber: 3.6 Consensus size: 46
87102870 GCCCATAAGC
* * *
87102880 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
** * * * * ***
87102926 GAACTCAAACTCAACTCAATGAGCTC--AGATGC-CTAGTTACATCTCT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TCCATAAAT
*
87102972 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAAT
1 -GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
*
87103019 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
87103048 TGCCCAAATA
Statistics
Matches: 96, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 58 0.60
47 27 0.28
49 5 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
Found at i:87116069 original size:37 final size:37
Alignment explanation
Indices: 87116019--87116093 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
87116009 TCTTTCATGC
87116019 TACTTTCATTATGAGTGCGTCAGTATTGAATTGTTAT
1 TACTTTCATTATGAGTGCGTCAGTATTGAATTGTTAT
87116056 TACTTTCATTATGAGTGCGTCAGTATTGAATTGTTAT
1 TACTTTCATTATGAGTGCGTCAGTATTGAATTGTTAT
87116093 T
1 T
87116094 CTAGAACTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.11, G:0.19, T:0.47
Consensus pattern (37 bp):
TACTTTCATTATGAGTGCGTCAGTATTGAATTGTTAT
Found at i:87124247 original size:50 final size:49
Alignment explanation
Indices: 87124179--87124297 Score: 168
Period size: 50 Copynumber: 2.4 Consensus size: 49
87124169 AAAACTATGA
*
87124179 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACTAGA-TGGTGAGG
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGACT-GT-AGG
* *
87124229 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGG
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGACTGTAGG
* *
87124278 TCGCATGTGTAGTACTAAGT
1 TCACGTGTGTAGTACTAAGT
87124298 GTAGGCTATT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 20 0.32
50 42 0.67
51 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGACTGTAGG
Found at i:87127319 original size:15 final size:15
Alignment explanation
Indices: 87127299--87127363 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
87127289 GTATCTTGGG
87127299 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
87127314 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
87127329 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
87127344 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
87127358 TTTCTT
1 TTTCTT
87127364 GTTATTTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:87127331 original size:30 final size:31
Alignment explanation
Indices: 87127295--87127363 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
87127285 TATCGTATCT
87127295 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
87127325 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
87127355 -GGTTTTCTT
1 TGGGTTTCTT
87127364 GTTATTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:87129574 original size:51 final size:51
Alignment explanation
Indices: 87129506--87129641 Score: 161
Period size: 49 Copynumber: 2.7 Consensus size: 51
87129496 TGTGACGTCG
* *
87129506 CATGTGTAGTACTAAGTGTAGCCTACTATGCGTACCCGAAAACTG-TGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCC-AAAACTGTTGATCA
* * * * * * *
87129557 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA--CTAGACTGTTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAACTGTTGATCA
87129606 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
87129642 AGATAGCTTT
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
48 5 0.07
49 36 0.51
51 29 0.41
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAACTGTTGATCA
Found at i:87136619 original size:177 final size:178
Alignment explanation
Indices: 87136372--87137170 Score: 857
Period size: 177 Copynumber: 4.5 Consensus size: 178
87136362 AAGTGACAGG
* * * * * * *
87136372 TCTTATCTCCCTAAGCAGTAGTGGAACAGACCAAAGACGACAAATCTTATCTCCATGTATCAGTA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
* * * * * *
87136437 ATGGAGTAGATTTAAGTCACTAGCCTTATCTCCCTGAAGTTGCAATG-GAGTAGGCTCAATATAC
66 ATGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAAGTAGCAA-GAGAGCAGGCTCAAGATAC
*
87136501 AAGTCTTATCTTCCT-AAGGTAGCAAGGAAGTAGACTGAAGATTGAAGA
130 AAGTCTTATCTTCCTAAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
* * * *
87136549 TCTTATATCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTTTCTCCATGTATCGGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
* * * * *
87136614 ATGGAGTAGATTTTAGCCACCAGCCTTACCTCCCTGAAGGT-GC-AGTGGAGCAGGCTCAATATA
66 ATGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAA-GTAGCAAG-AGAGCAGGCTCAAGATA
* * *
87136677 CAAGTCTTATCTTCCTGAA-GTAACAAGGAAGCAAACTGAAGATTGAAGA
129 CAAGTCTTATCTTCCTAAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
* *
87136726 TCTTATCTCCCTAAGCAGTAGCGGAGTAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
** * * * *** **
87136791 ACAGAGCAGATTTTAGCCA-TCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATGG
66 ATGGAGCAGATTTTAGCCACT-AGCCTTATCTCCCTGAAGTAGCAAGAGAGCAGGCTCAAGATAC
** * *
87136855 TGGTCTTATCTTCCT-GAGGTAGCAAGGAAGCAGATTGAAGATTGAAGA
130 AAGTCTTATCTTCCTAAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
* * * *
87136903 TCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGACA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
* * * * *
87136968 ATGGAGCAGATTTTAGCCA-TGAGCCTTATCTCTCTGAGGTAGCAAGAGAGCGGGTTGAAGACGG
66 ATGGAGCAGATTTTAGCCACT-AGCCTTATCTCCCTGAAGTAGCAAGAGAGCAGGCTCAAGA---
*** * * * *
87137032 TGGTAGTCTTATC-TCCTTAAAGTTA-CAGTGGAA-CAGACTGAAAATTGCAGA
127 TACAAGTCTTATCTTCC-TAAAGGTAGCA-AGGAAGCAGACTGAAGATTGAAGA
* * * *
87137083 TCTTATCTCCCTAAGCAGTTGAGGAGCAGATCAAGGATGGCGAATCTTATCTCTATGTATCGGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
87137148 ATGGAGCAGA-TTTAGGCCACTAG
66 ATGGAGCAGATTTTA-GCCACTAG
87137171 TCCTATTTCA
Statistics
Matches: 535, Mismatches: 71, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
175 1 0.00
176 4 0.01
177 405 0.76
178 6 0.01
179 7 0.01
180 103 0.19
181 9 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (178 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
ATGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAAGTAGCAAGAGAGCAGGCTCAAGATACA
AGTCTTATCTTCCTAAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
Found at i:87138974 original size:29 final size:29
Alignment explanation
Indices: 87138934--87138998 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 29
87138924 ACATTATTGT
* * * *
87138934 TTTCATAT-TATTTTATGTAAATATTTTC
1 TTTCAAATCTATTATATATAAACATTTTC
* *
87138962 TTTTAAATCTATTATATATATACATTTTC
1 TTTCAAATCTATTATATATAAACATTTTC
87138991 TTTCAAAT
1 TTTCAAAT
87138999 TTATATGTGT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (29 bp):
TTTCAAATCTATTATATATAAACATTTTC
Found at i:87140534 original size:46 final size:44
Alignment explanation
Indices: 87140429--87140651 Score: 171
Period size: 46 Copynumber: 4.8 Consensus size: 44
87140419 GGGATAGGAT
* *
87140429 GCTGATGCCATGTCCTGGACATGGTCTTACACTAGCTTAAGTCGTA
1 GCTGATG-CATGTCCTAGACAT-GTCTTACACTAGCTTAACTCGTA
* * *
87140475 GCCGATGCATGTCCTAGACATGTCTTACACTGGTTTACATCTCG-A
1 GCTGATGCATGTCCTAGACATGTCTTACACTAGCTTA-A-CTCGTA
* * ** *
87140520 GGCTGATGCATGTCCCAGACGTGTCTTACACTAGCTCTCGTCTCACT-
1 -GCTGATGCATGTCCTAGACATGTCTTACACTAGCT-T-AACTC-GTA
* **
87140567 GCCGATGCCATGTCCCGGACATGGTCTTACACTAGCTTAACTCGTAA
1 GCTGATG-CATGTCCTAGACAT-GTCTTACACTAGCTTAACTCGT-A
*
87140614 TGTGGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 ----GCTGATGCATGTCCTAGACATGTCTTACACTAGC
87140652 GCACAATAGT
Statistics
Matches: 141, Mismatches: 21, Indels: 27
0.75 0.11 0.14
Matches are distributed among these distances:
44 14 0.10
45 16 0.11
46 51 0.36
47 14 0.10
48 14 0.10
49 13 0.09
50 13 0.09
51 6 0.04
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (44 bp):
GCTGATGCATGTCCTAGACATGTCTTACACTAGCTTAACTCGTA
Found at i:87143417 original size:93 final size:93
Alignment explanation
Indices: 87143302--87143474 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
87143292 CGCCCATAAG
* *
87143302 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
87143367 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
87143395 CGAACTCGGACTCAACTTAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
87143460 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
87143475 CAAATATCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:87143470 original size:46 final size:46
Alignment explanation
Indices: 87143295--87143470 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
87143285 TGTAACCCGC
* *
87143295 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
87143341 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* * *
87143391 -C-TCA-CGAACTCGGACTCAACTTAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
87143434 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
87143471 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.61
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:87143489 original size:46 final size:45
Alignment explanation
Indices: 87143346--87143489 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
87143336 CGCATCCATA
* * *
87143346 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * * *
87143394 A-CGAACTCGGACTCAACTTAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
87143439 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
87143485 AGTGA
1 AGTGA
87143490 CATGTCACTT
Statistics
Matches: 75, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 36 0.48
47 29 0.39
48 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:87148985 original size:52 final size:53
Alignment explanation
Indices: 87148923--87149033 Score: 206
Period size: 52 Copynumber: 2.1 Consensus size: 53
87148913 CACTCATTAG
*
87148923 CTAAATTAAGCTATAAAGGTCCTAAAAGTAC-AAAACCATAAAAAATAATCAT
1 CTAAATTAAGCTATAAAGGTCCCAAAAGTACAAAAACCATAAAAAATAATCAT
87148975 CTAAATTAAGCTATAAAGGTCCCAAAAGTACAAAAACCATAAAAAATAATCAT
1 CTAAATTAAGCTATAAAGGTCCCAAAAGTACAAAAACCATAAAAAATAATCAT
87149028 CTAAAT
1 CTAAAT
87149034 CACTTAATTG
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 30 0.53
53 27 0.47
ACGTcount: A:0.54, C:0.16, G:0.07, T:0.23
Consensus pattern (53 bp):
CTAAATTAAGCTATAAAGGTCCCAAAAGTACAAAAACCATAAAAAATAATCAT
Found at i:87164356 original size:22 final size:22
Alignment explanation
Indices: 87164324--87164377 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
87164314 CTGCCTTCGA
*
87164324 TGTCGCGACAAAAGCATGACGG
1 TGTCGCGACAAAAGCACGACGG
*
87164346 TGTTGCGACAAAAGCACGACGG
1 TGTCGCGACAAAAGCACGACGG
87164368 TGTCGCGACA
1 TGTCGCGACA
87164378 TCAGTCTTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.30, C:0.24, G:0.31, T:0.15
Consensus pattern (22 bp):
TGTCGCGACAAAAGCACGACGG
Found at i:87180268 original size:23 final size:24
Alignment explanation
Indices: 87180230--87180274 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
87180220 TTTGCTCTTC
*
87180230 TAGCATGAACTTGTCTAACCTTTT
1 TAGCATGAACTCGTCTAACCTTTT
*
87180254 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTAACCTT
87180275 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.40
Consensus pattern (24 bp):
TAGCATGAACTCGTCTAACCTTTT
Found at i:87180530 original size:55 final size:54
Alignment explanation
Indices: 87180387--87180594 Score: 242
Period size: 55 Copynumber: 3.8 Consensus size: 54
87180377 ATCCTTTGGA
*
87180387 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGT
* * * *
87180440 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACC-TTGCCTTATAGT
* * * * *
87180495 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGT
* *
87180550 -ACTTACCAATTTCCATGTCTTGGCATGGTCTTACATGGTATCCTT
1 AACTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTA-CCTT
87180595 AAACCCTAAC
Statistics
Matches: 130, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 44 0.34
54 10 0.08
55 72 0.55
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTGCCTTATAGT
Found at i:87180531 original size:108 final size:110
Alignment explanation
Indices: 87180387--87180587 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
87180377 ATCCTTTGGA
* *
87180387 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-A-ACTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAATACTCACCAA
87180450 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
87180495 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAATACTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAATACTCACCAAT
* *
87180560 TTCCATGTCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
87180588 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 8 0.10
110 26 0.31
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAATACTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:87203237 original size:46 final size:46
Alignment explanation
Indices: 87203185--87203360 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
87203175 TATTTGGGCA
*
87203185 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
87203231 TCCGAGCTCGTTGAGTTGAGTCCGAGTT--C-T-TGAGATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
87203276 CATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
87203324 CCCAAGCTCGTTGAGTTGAGTCCGAGTTTTCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87203361 GCGGGTTTCA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 1 0.01
45 1 0.01
46 59 0.54
47 27 0.25
48 1 0.01
49 1 0.01
50 5 0.05
51 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:87203340 original size:93 final size:93
Alignment explanation
Indices: 87203181--87203351 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
87203171 AGGATATTTG
* * * *
87203181 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
1 GGCATCCGAGCTCATTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAGCTCGTTGAG
87203246 TTGAGTCCGAGTTCTTGAGATGTAACTA
66 TTGAGTCCGAGTTCTTGAGATGTAACTA
*
87203274 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAGCTCGTTGAG
1 GGCATCCGAGCTCATTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAGCTCGTTGAG
87203339 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
87203352 TTCTTATGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCATTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAGCTCGTTGAG
TTGAGTCCGAGTTCTTGAGATGTAACTA
Found at i:87206184 original size:13 final size:13
Alignment explanation
Indices: 87206160--87206197 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
87206150 ATTTAAATCA
87206160 TCTT-TTTA-TTT
1 TCTTATTTATTTT
87206171 TCTTATTTATTTT
1 TCTTATTTATTTT
87206184 TCTTATTTATTTT
1 TCTTATTTATTTT
87206197 T
1 T
87206198 ATCTCAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 4 0.16
12 4 0.16
13 17 0.68
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (13 bp):
TCTTATTTATTTT
Found at i:87210168 original size:47 final size:47
Alignment explanation
Indices: 87210107--87210348 Score: 382
Period size: 47 Copynumber: 5.4 Consensus size: 47
87210097 CAGCCAAGAT
87210107 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
87210154 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
87210201 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAA--T---
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87210243 A-TG------TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87210283 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
87210330 AGTGTATATATGTGATAAG
1 AGTGTATATATGTGATAAG
87210349 TCCCGAAGGG
Statistics
Matches: 182, Mismatches: 1, Indels: 24
0.88 0.00 0.12
Matches are distributed among these distances:
35 31 0.17
37 1 0.01
40 1 0.01
41 4 0.02
42 1 0.01
45 1 0.01
47 143 0.79
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:87210246 original size:35 final size:35
Alignment explanation
Indices: 87210206--87210277 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
87210196 GTGAAAGTGT
87210206 ATATGTGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATATGTGTGATAAGGCCTAATGGCCGATGTGATGA
87210241 ATATGTGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATATGTGTGATAAGGCCTAATGGCCGATGTGATGA
87210276 AT
1 AT
87210278 GTGAAAGTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (35 bp):
ATATGTGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:87210297 original size:82 final size:82
Alignment explanation
Indices: 87210159--87210324 Score: 323
Period size: 82 Copynumber: 2.0 Consensus size: 82
87210149 GTGAAAGTGT
*
87210159 ATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCT
1 ATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
87210224 AATGGCCGATGTGATGA
66 AATGGCCGATGTGATGA
87210241 ATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
87210306 AATGGCCGATGTGATGA
66 AATGGCCGATGTGATGA
87210323 AT
1 AT
87210325 GTGAAAGTGT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.30
Consensus pattern (82 bp):
ATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGA
Found at i:87210344 original size:129 final size:129
Alignment explanation
Indices: 87210112--87210348 Score: 447
Period size: 129 Copynumber: 1.8 Consensus size: 129
87210102 AAGATAGTGT
*
87210112 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
87210177 AATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
87210241 ATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
87210306 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
87210349 TCCCGAAGGG
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
129 105 1.00
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (129 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:87210523 original size:37 final size:37
Alignment explanation
Indices: 87210467--87210545 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
87210457 CCGAGCTCTA
* *
87210467 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
87210504 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
87210541 AAGAC
1 AAGAC
87210546 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:87212360 original size:100 final size:100
Alignment explanation
Indices: 87212187--87212382 Score: 302
Period size: 100 Copynumber: 2.0 Consensus size: 100
87212177 GTTGAACCAA
* * *
87212187 TGTCTGATCTGGTAATAGAAAGACTGATTACAACGAATGTACCATTCCTGACACGACTAGAGGGT
1 TGTCTGATCTGGTAATAGAAAGACTGATCACAACGAATGTACCATTCCCGACACGACTAGAGGAT
* *
87212252 AAATAAAAGAGGGACAAGGTAGAGTTTATAATCGG
66 AAACAAAAGAGGGACAAGGTAAAGTTTATAATCGG
* *** *
87212287 TGTCTGATCTGGTAATAGCAAGACTGATCACAACGAATGTATTGTTCCCGACATGACTAGAGGAT
1 TGTCTGATCTGGTAATAGAAAGACTGATCACAACGAATGTACCATTCCCGACACGACTAGAGGAT
87212352 AAACAAAAGAGGGACAAGGTAAAGTTTATAA
66 AAACAAAAGAGGGACAAGGTAAAGTTTATAA
87212383 ATTTTCTTAA
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 86 1.00
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (100 bp):
TGTCTGATCTGGTAATAGAAAGACTGATCACAACGAATGTACCATTCCCGACACGACTAGAGGAT
AAACAAAAGAGGGACAAGGTAAAGTTTATAATCGG
Found at i:87216447 original size:12 final size:14
Alignment explanation
Indices: 87216432--87216463 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
87216422 GTGAGAACAC
87216432 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
87216444 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
87216458 ATGTGT
1 ATGTGT
87216464 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:87216553 original size:50 final size:50
Alignment explanation
Indices: 87216430--87216724 Score: 270
Period size: 50 Copynumber: 5.9 Consensus size: 50
87216420 TTGTGAGAAC
* * *** *
87216430 ACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTGTAGGTT
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG-T-TAGGTT
* * * *
87216482 ACGTGTGTAGTACTAACTGTAGGCTACTACGTGTACCAGATAGTTAGGTT
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTT
* * ** * * * * * *
87216532 GCATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGACGACTTCGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAGTTAGGTT
* * * * *
87216583 ACGTGTGTAGTACTAACTGCAGGCTACTACGTGTATCAGATGGTTAGGTT
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTT
* * *
87216633 ACGTGTGTAGTACTAAGTACAGGCTACTATGTGTACCAGATTA-TT-GGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAGTTAGGTT
* *
87216682 ACATGTGTAGTACTAAGTGCAGGCTACTGTGCGTACCAGATAG
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
87216725 CTTCGATTAC
Statistics
Matches: 195, Mismatches: 45, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
48 2 0.01
49 39 0.20
50 81 0.42
51 38 0.19
52 35 0.18
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTT
Found at i:87216612 original size:101 final size:99
Alignment explanation
Indices: 87216482--87216724 Score: 306
Period size: 101 Copynumber: 2.4 Consensus size: 99
87216472 GTTGTAGGTT
* *
87216482 ACGTGTGTAGTACTAACTGTAGGCTACTACGTGTACCAGATAGTTAGGTTGCATGTGTAGTACTA
1 ACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATAGTTAGGTTACATGTGTAGTACTA
** *
87216547 AGTGTAGGCTACTATGCATACCCGACGACTTCGATC
66 AGTACAGGCTACTATGCATACCAGACGA-TT-GATC
* * *
87216583 ACGTGTGTAGTACTAACTGCAGGCTACTACGTGTATCAGATGGTTAGGTTACGTGTGTAGTACTA
1 ACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATAGTTAGGTTACATGTGTAGTACTA
** ** *
87216648 AGTACAGGCTACTATGTGTACCAGATTATTGGTC
66 AGTACAGGCTACTATGCATACCAGACGATTGATC
* * ** *
87216682 ACATGTGTAGTACTAAGTGCAGGCTACTGTGCGTACCAGATAG
1 ACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATAG
87216725 CTTCGATTAC
Statistics
Matches: 122, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
99 39 0.32
100 2 0.02
101 81 0.66
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (99 bp):
ACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATAGTTAGGTTACATGTGTAGTACTA
AGTACAGGCTACTATGCATACCAGACGATTGATC
Found at i:87216659 original size:151 final size:152
Alignment explanation
Indices: 87216433--87216718 Score: 398
Period size: 151 Copynumber: 1.9 Consensus size: 152
87216423 TGAGAACACA
** * * *
87216433 TGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTGTAGGTTACGTGTGTAGTACTAA
1 TGTGTAGTACTAACTGCAGGCTACTACGTGTATAAGATGGTTGTAGGTTACGTGTGTAGTACTAA
** ** *
87216498 CTGTAGGCTACTACGTGTACCAGA-TAGTTAGGTTGCATGTGTAGTACTAAGTGTAGGCTACTAT
66 CTACAGGCTACTACGTGTACCAGATTA-TT-GGTCACATGTGTAGTACTAAGTGCAGGCTACTAT
87216562 GCATACCCGACGACTTCGATCACG
129 GCATACCCGACGACTTCGATCACG
*
87216586 TGTGTAGTACTAACTGCAGGCTACTACGTGTATCAGATGG-T-TAGGTTACGTGTGTAGTACTAA
1 TGTGTAGTACTAACTGCAGGCTACTACGTGTATAAGATGGTTGTAGGTTACGTGTGTAGTACTAA
* * *
87216649 GTACAGGCTACTATGTGTACCAGATTATTGGTCACATGTGTAGTACTAAGTGCAGGCTACTGTGC
66 CTACAGGCTACTACGTGTACCAGATTATTGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGC
*
87216714 GTACC
131 ATACC
87216719 AGATAGCTTC
Statistics
Matches: 117, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
150 36 0.31
151 44 0.38
152 3 0.03
153 34 0.29
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (152 bp):
TGTGTAGTACTAACTGCAGGCTACTACGTGTATAAGATGGTTGTAGGTTACGTGTGTAGTACTAA
CTACAGGCTACTACGTGTACCAGATTATTGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGC
ATACCCGACGACTTCGATCACG
Found at i:87216943 original size:16 final size:15
Alignment explanation
Indices: 87216922--87216951 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
87216912 GAATGGAGTA
87216922 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
87216938 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
87216952 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:87222521 original size:18 final size:18
Alignment explanation
Indices: 87222498--87222538 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
87222488 AGCAGATAAA
* *
87222498 TCCTAATCATGGATTTAC
1 TCCTAACCAAGGATTTAC
87222516 TCCTAACCAAGGATTTAC
1 TCCTAACCAAGGATTTAC
87222534 TCCTA
1 TCCTA
87222539 TATTAACATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (18 bp):
TCCTAACCAAGGATTTAC
Found at i:87223589 original size:42 final size:42
Alignment explanation
Indices: 87223543--87223652 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 42
87223533 CATAGTTCAA
* *
87223543 CTATGGTCTTACACATCTTCACATAAT-GATGACATAGCCCAT
1 CTATGGTCTTACACATATTCACAT-ATCGATGACATAGCCCAG
* * *
87223585 CTATGGTCTTACACATATTCATATATCGATGCCATAGCGCAG
1 CTATGGTCTTACACATATTCACATATCGATGACATAGCCCAG
*
87223627 CTATGGTCCTACACGA-ATT-ACATATC
1 CTATGGTCTTACAC-ATATTCACATATC
87223653 TCACTGATGC
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
41 8 0.14
42 50 0.85
43 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
CTATGGTCTTACACATATTCACATATCGATGACATAGCCCAG
Found at i:87223802 original size:31 final size:31
Alignment explanation
Indices: 87223766--87223938 Score: 276
Period size: 31 Copynumber: 5.6 Consensus size: 31
87223756 CTTATAGCCA
* *
87223766 AAGCTACCACTATTCACTGATCAAGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
* * *
87223797 GAGCTACCATTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
*
87223828 AAGCTACCACTTTTCACTGATCAGGTAGCCAG
1 AAGCTACCACTTTTCACTGATCAGGTAG-CTG
87223860 AA-CTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
87223890 AAGCTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
87223921 AAGCTACCACTTTTCACT
1 AAGCTACCACTTTTCACT
87223939 TGTCATTTGT
Statistics
Matches: 131, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
30 4 0.03
31 123 0.94
32 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCTG
Found at i:87224020 original size:50 final size:51
Alignment explanation
Indices: 87223914--87224042 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
87223904 CACTGATCAG
* * *
87223914 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
87223965 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
87224015 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
87224043 TGCCATGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:87226161 original size:4 final size:4
Alignment explanation
Indices: 87226152--87226182 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
87226142 CTCGAATATT
87226152 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
87226183 TTACCATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:87228425 original size:79 final size:81
Alignment explanation
Indices: 87228289--87228473 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
87228279 TTGAATGATG
* *
87228289 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
87228353 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
87228368 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
87228430 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
87228448 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87228474 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:87228487 original size:40 final size:40
Alignment explanation
Indices: 87228290--87228473 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
87228280 TGAATGATGT
* * * *
87228290 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
87228330 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
87228370 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
87228408 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
87228449 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
87228474 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:87228495 original size:79 final size:79
Alignment explanation
Indices: 87228342--87228506 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
87228332 GGACTAAGAT
* * **
87228342 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
87228407 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
87228421 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
87228484 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
87228500 CCGAAGG
1 CCGAAGG
87228507 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:87236403 original size:40 final size:40
Alignment explanation
Indices: 87236207--87236389 Score: 207
Period size: 39 Copynumber: 4.6 Consensus size: 40
87236197 TGAATGATGT
* * * *
87236207 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
87236247 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
87236287 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
87236325 TCCGGGTTAAGTCCCG-AGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
87236365 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
87236390 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
39 69 0.56
40 47 0.38
41 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:87236411 original size:78 final size:78
Alignment explanation
Indices: 87236263--87236412 Score: 198
Period size: 78 Copynumber: 1.9 Consensus size: 78
87236253 TAAGATCCGA
* **
87236263 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 AGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCC
87236328 GGGTTAAGTCCCG
66 GGGTTAAGTCCCG
* * *
87236341 AGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 AGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAA
87236404 TCC-GGTTAA
63 TCCGGGTTAA
87236413 ATTCCGAAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
77 2 0.03
78 36 0.57
79 25 0.40
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
AGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCC
GGGTTAAGTCCCG
Found at i:87252517 original size:45 final size:38
Alignment explanation
Indices: 87252504--87252618 Score: 94
Period size: 39 Copynumber: 3.0 Consensus size: 38
87252494 CGGATTTACG
* * *
87252504 TTAGTAACTCGCACCAATGCCTTCGGGCTT-CGCGGAA
1 TTAGTAACTCGCACAAATGCCTTCGGACTTACCCGGAA
* *
87252541 TTAGTAACTCGCACAAATGCCTTCGGTCTTAGTCCGGAA
1 TTAGTAACTCGCACAAATGCCTTCGGACTTA-CCCGGAA
* *
87252580 -TATGT-ACTTAGCACAAAAG-CTTCGGGACTTAGCCCGGAA
1 TTA-GTAAC-TCGCACAAATGCCTTC-GGACTTA-CCCGGAA
87252619 ATATCATTCG
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
37 28 0.43
38 8 0.12
39 29 0.45
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (38 bp):
TTAGTAACTCGCACAAATGCCTTCGGACTTACCCGGAA
Found at i:87266640 original size:79 final size:79
Alignment explanation
Indices: 87266500--87266721 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 79
87266490 TATTCGAATG
* * * **
87266500 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGC
87266565 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
87266581 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGC
87266644 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
87266660 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
87266722 TATGTGATTC
Statistics
Matches: 122, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 64 0.52
80 45 0.37
81 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:87266702 original size:40 final size:40
Alignment explanation
Indices: 87266500--87266707 Score: 262
Period size: 40 Copynumber: 5.2 Consensus size: 40
87266490 TATTCGAATG
* * *
87266500 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
87266541 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
87266581 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
87266620 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
87266660 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
87266700 ATATCCGG
1 ATATCCGG
87266708 TTAAATTCCG
Statistics
Matches: 147, Mismatches: 14, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
39 37 0.25
40 81 0.55
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:87279426 original size:54 final size:54
Alignment explanation
Indices: 87279357--87279470 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 54
87279347 CACACAGCCC
* **
87279357 TGCTTAAGGCCGTGTGACCAACACGGATGGAAACACGACCGTGCGATACGGCCG
1 TGCTGAAGGCCGTGTGACCAACACGGACAGAAACACGACCGTGCGATACGGCCG
87279411 TGCTGAAGGCCGTGTGACCAACACGGACAGAAACACGACCGTGCGATACGGCCG
1 TGCTGAAGGCCGTGTGACCAACACGGACAGAAACACGACCGTGCGATACGGCCG
87279465 TG-TGAA
1 TGCTGAA
87279471 AATAGGGTAA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 4 0.07
54 53 0.93
ACGTcount: A:0.27, C:0.27, G:0.32, T:0.14
Consensus pattern (54 bp):
TGCTGAAGGCCGTGTGACCAACACGGACAGAAACACGACCGTGCGATACGGCCG
Found at i:87284339 original size:49 final size:49
Alignment explanation
Indices: 87284267--87284504 Score: 314
Period size: 49 Copynumber: 4.8 Consensus size: 49
87284257 TGAGGTCACG
*
87284267 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * *
87284316 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TTGGTCGCA
* * ** * *
87284367 TGTGTAGTACTAAGTCCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
87284417 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
87284466 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
87284505 GCTTCGGCTA
Statistics
Matches: 163, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 81 0.50
50 44 0.27
51 38 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:87284396 original size:28 final size:27
Alignment explanation
Indices: 87284364--87284447 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
87284354 AACTTTGATC
87284364 ACGTGTGTAGTACTAAGTCCAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
* * *
87284392 ACGTGTATCAG-A-T-GGTTAGG-T-C-
1 ACGTGTGT-AGTACTAAGTCAGGCTACT
87284414 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
87284442 ACGTGT
1 ACGTGT
87284448 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.30
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTCAGGCTACT
Found at i:87287098 original size:47 final size:48
Alignment explanation
Indices: 87286976--87287124 Score: 129
Period size: 47 Copynumber: 3.0 Consensus size: 48
87286966 AGTCGTCCAT
* * *
87286976 CTGAAACACCATTTCTGGACAAGCCACCACTGATTTGTAGATAAACTGTCA
1 CTGAAACACC--TTGTGGACAAGCCACCAC-GATATGTAGATAAACTGCCA
* ** ** * *
87287027 CTAATAACATTTTGTGGATGAGCCACCAC-ATATGTAGATATATTGCCA
1 CTGA-AACACCTTGTGGACAAGCCACCACGATATGTAGATAAACTGCCA
* * *
87287075 CTGAAACACCTTGTGGACAAGCCACCACTAATTTGCAGATAAACTGCCA
1 CTGAAACACCTTGTGGACAAGCCACCAC-GATATGTAGATAAACTGCCA
87287124 C
1 C
87287125 ATACTTCCAC
Statistics
Matches: 76, Mismatches: 19, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
47 20 0.26
48 18 0.24
49 16 0.21
50 15 0.20
51 3 0.04
52 4 0.05
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (48 bp):
CTGAAACACCTTGTGGACAAGCCACCACGATATGTAGATAAACTGCCA
Found at i:87288617 original size:47 final size:46
Alignment explanation
Indices: 87288520--87288646 Score: 128
Period size: 47 Copynumber: 2.7 Consensus size: 46
87288510 TTTGATAAGC
* * * *
87288520 ACCTATACCATGGCCAGTAGCCATATCAAGGTAACTTATCCCGGAGT
1 ACCTATACCATGGCC-GTAGCCAAATCAAGGTAACTCATCCCAGAAT
* * * *
87288567 ACCTATACCATGGCTCGTAACCAAATCAAGGTAACTCCTCTCATAAT
1 ACCTATACCATGGC-CGTAGCCAAATCAAGGTAACTCATCCCAGAAT
* * *
87288614 ACCTATATCATTGCCCATAGCCAAATCAAGGTA
1 ACCTATACCA-TGGCCGTAGCCAAATCAAGGTA
87288647 TTATTCGCAC
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
47 62 0.94
48 4 0.06
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.24
Consensus pattern (46 bp):
ACCTATACCATGGCCGTAGCCAAATCAAGGTAACTCATCCCAGAAT
Found at i:87298128 original size:40 final size:40
Alignment explanation
Indices: 87298072--87298314 Score: 239
Period size: 40 Copynumber: 6.1 Consensus size: 40
87298062 CGGAATTTAA
** *
87298072 CCGGATATAGCT-ACTCATTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCACACAAATGCCTTCGGGACTTAGC
* *
87298112 CCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
* *** *
87298152 CCGGATTTAGTAACTCGTGCCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
* **
87298191 CC-GAAATTAGTAACTTGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATA-TAGTAACTCACACAAATGCCTTCGGGACTTAGC
* *
87298230 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAGC
* *
87298270 CCGGATATAGTCACTTAGCACAAAT-CCTTCGGGACTTAGC
1 CCGGATATAGTAACTCA-CACAAATGCCTTCGGGACTTAGC
87298310 CCGGA
1 CCGGA
87298315 CATCATTCGA
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
38 4 0.02
39 62 0.36
40 94 0.55
41 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
Found at i:87298299 original size:118 final size:119
Alignment explanation
Indices: 87298091--87298312 Score: 285
Period size: 118 Copynumber: 1.9 Consensus size: 119
87298081 GCTACTCATT
*
87298091 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
*
87298156 ATTTAGTAACTCGTGCCAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTTGCA
66 ATATAGTAACTC-TGCCAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTTGCA
* * **
87298210 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCC
*
87298272 GGATATAGTCACT-TAGCACAAAT-CCTTCGGGACTTAGCCCG
64 GGATATAGTAACTCT-GC-C-AATGCCTTCGGGACTTAGCCCG
87298313 GACATCATTC
Statistics
Matches: 90, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
116 1 0.01
117 6 0.07
118 57 0.63
119 26 0.29
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTCTGCCAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTTGCA
Found at i:87302209 original size:48 final size:48
Alignment explanation
Indices: 87302152--87302467 Score: 271
Period size: 48 Copynumber: 6.6 Consensus size: 48
87302142 TGTGTGCTAG
*
87302152 TGTAAGACCATGCCTGGGACATGGCGA-CGGCCACGATATGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGC-ATCGGCCACGATATGAGAGCCAA
* * * * * * * *
87302200 TGTAAGACCATGTTTGGAACATGGTATCGGCGATGTTGTGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAA
* * * *
87302248 TGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGTGTGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAA
* * * *
87302296 TGTAAGACCATGTCTGGGACATGACATCGGCCACAACATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAA
* * * * * * * *
87302344 TGAAAAACCATGTCTGGGATATGGCATCGG-CATTGAGACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAA
* * * * * *
87302392 TGTAAGACCATGTCTAGGACATGGAATTGGCCTCGACATGTA-AGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATG-AGAGCCAA
* *
87302440 TGTAAGACCATGTTTGGAACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
87302468 AGCAATTCAC
Statistics
Matches: 210, Mismatches: 52, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
47 4 0.02
48 202 0.96
49 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAA
Found at i:87302318 original size:96 final size:95
Alignment explanation
Indices: 87302150--87302467 Score: 313
Period size: 96 Copynumber: 3.3 Consensus size: 95
87302140 TATGTGTGCT
* * *
87302150 AGTGTAAGACCATGCCTGGGACATGGCGA-CGGCCA-CGATATGAGAGCCAATGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGC-ATCGG-CATTGATATGAGAGCTAATGTAAGACCATGT
* * * **
87302213 TTGGAACATGGTATCGGCGATGTTGTGAGAGCC
64 CTGGGACATGGAATCGGCGA-AATGTGAGAGCC
* *
87302246 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAATGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAATGTAAGACCATGTCT
* **
87302311 GGGACAT-GACATCGGCCACAACATGAGAGCC
66 GGGACATGGA-ATCGGCGA-AATGTGAGAGCC
* * * * * *
87302342 AGTGAAAAACCATGTCTGGGATATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAATGTAAGACCATGTCT
* * *
87302407 AGGACATGGAATTGGCCTCGACATGT-A-AGCC
66 GGGACATGGAATCGG---CGAAATGTGAGAGCC
* *
87302438 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
87302468 AGCAATTCAC
Statistics
Matches: 182, Mismatches: 33, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
95 4 0.02
96 171 0.94
97 3 0.02
98 2 0.01
99 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAATGTAAGACCATGTCT
GGGACATGGAATCGGCGAAATGTGAGAGCC
Found at i:87302397 original size:144 final size:144
Alignment explanation
Indices: 87302137--87302415 Score: 366
Period size: 144 Copynumber: 1.9 Consensus size: 144
87302127 GACATTTAGG
* * * *
87302137 TGATATGTGTGCTAGTGTAAGACCATGCCTGGGACATGGCGACGGCCACGATATGAGAGCCAATG
1 TGATATGTGTGCTAATGTAAGACCATGCCTGGGACATGACGACGGCCACAACATGAGAGCCAATG
* * * * * * *
87302202 TAAGACCATGTTTGGAACATGGTATCGGCGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
66 AAAAACCATGTCTGGAACATGGCATCGGCGATGTAGCGAGAGCCAGTGTAAGACCATGTCTAGGA
87302267 CATGGCATCGGCAT
131 CATGGCATCGGCAT
* *
87302281 TGATATGTGTGCTAATGTAAGACCATGTCTGGGACATGAC-ATCGGCCACAACATGAGAGCCAGT
1 TGATATGTGTGCTAATGTAAGACCATGCCTGGGACATGACGA-CGGCCACAACATGAGAGCCAAT
* * *
87302345 GAAAAACCATGTCTGGGATATGGCATCGGC-AT-TGAGACGAGAGCTAGTGTAAGACCATGTCTA
65 GAAAAACCATGTCTGGAACATGGCATCGGCGATGT-AG-CGAGAGCCAGTGTAAGACCATGTCTA
87302408 GGACATGG
128 GGACATGG
87302416 AATTGGCCTC
Statistics
Matches: 116, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
142 1 0.01
143 4 0.03
144 111 0.96
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (144 bp):
TGATATGTGTGCTAATGTAAGACCATGCCTGGGACATGACGACGGCCACAACATGAGAGCCAATG
AAAAACCATGTCTGGAACATGGCATCGGCGATGTAGCGAGAGCCAGTGTAAGACCATGTCTAGGA
CATGGCATCGGCAT
Found at i:87302444 original size:144 final size:144
Alignment explanation
Indices: 87302150--87302467 Score: 354
Period size: 144 Copynumber: 2.2 Consensus size: 144
87302140 TATGTGTGCT
* * * * * *
87302150 AGTGTAAGACCATGCCTGGGACATGGCGA-CGGCCACGATATGAGAGCCAATGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGC-ATCGGCCACAACATGAGAGCCAATGAAAAACCATGTC
* * * * *
87302214 TGGAACATGGTATCGGCGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65 TGGAACATGGCATCGGCGATGTAGCGAGAGCCAGTGTAAGACCATGTCTAGGACATGGAATCGGC
* * ** *
87302279 ATTGATATGTGTGCT
130 ATCGACATGTAAGCC
* * *
87302294 AATGTAAGACCATGTCTGGGACATGACATCGGCCACAACATGAGAGCCAGTGAAAAACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAATGAAAAACCATGTCT
* * * *
87302359 GGGATATGGCATCGGC-AT-TGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATGGAATTGG
66 GGAACATGGCATCGGCGATGT-AG-CGAGAGCCAGTGTAAGACCATGTCTAGGACATGGAATCGG
*
87302422 CCTCGACATGTAAGCC
129 CATCGACATGTAAGCC
* *
87302438 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
87302468 AGCAATTCAC
Statistics
Matches: 143, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
142 1 0.01
143 4 0.03
144 138 0.97
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (144 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAATGAAAAACCATGTCT
GGAACATGGCATCGGCGATGTAGCGAGAGCCAGTGTAAGACCATGTCTAGGACATGGAATCGGCA
TCGACATGTAAGCC
Found at i:87309702 original size:31 final size:31
Alignment explanation
Indices: 87309664--87309727 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
87309654 CCTTTTCATA
*
87309664 TTTCATATTTCACAACACTGGGCTGAAGCCT
1 TTTCATATTTCACAACACTGGGCCGAAGCCT
* **
87309695 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCACAACACTGGGCCGAAGCCT
87309726 TT
1 TT
87309728 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCACAACACTGGGCCGAAGCCT
Found at i:87309985 original size:23 final size:24
Alignment explanation
Indices: 87309935--87310037 Score: 158
Period size: 23 Copynumber: 4.4 Consensus size: 24
87309925 CTGAAGGCCT
* *
87309935 AGCCTCTTTTACTAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
87309960 AGCCCTTTTAATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
87309983 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
87310006 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
87310029 AGCCCTTTT
1 AGCCCTTTT
87310038 TCACTTCCTC
Statistics
Matches: 74, Mismatches: 2, Indels: 5
0.91 0.02 0.06
Matches are distributed among these distances:
22 10 0.14
23 46 0.62
24 14 0.19
25 4 0.05
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:87310112 original size:20 final size:20
Alignment explanation
Indices: 87310087--87310152 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
87310077 TTATGATTAC
87310087 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
87310107 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
87310127 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
87310147 ACCATG
1 ATCATG
87310153 CCTATCAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:87310118 original size:11 final size:11
Alignment explanation
Indices: 87310087--87310142 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
87310077 TTATGATTAC
87310087 ATCATGTGCAT
1 ATCATGTGCAT
*
87310098 ATCA--TACAT
1 ATCATGTGCAT
87310107 ATCATGTGCAT
1 ATCATGTGCAT
*
87310118 ATCA--TACAT
1 ATCATGTGCAT
*
87310127 GTCATGTGCAT
1 ATCATGTGCAT
87310138 ATCAT
1 ATCAT
87310143 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:87329438 original size:33 final size:33
Alignment explanation
Indices: 87329394--87329470 Score: 129
Period size: 33 Copynumber: 2.4 Consensus size: 33
87329384 ATACTAGGCT
*
87329394 TTGTATT-TTATTGTGGCATATTGTTTGCATTC
1 TTGTATTATTATTGTGGCATATTATTTGCATTC
*
87329426 TTGTGTTATTATTGTGGCATATTATTTGCATTC
1 TTGTATTATTATTGTGGCATATTATTTGCATTC
87329459 TTGTATTATTAT
1 TTGTATTATTAT
87329471 ATTGATCATT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
32 6 0.15
33 35 0.85
ACGTcount: A:0.18, C:0.08, G:0.17, T:0.57
Consensus pattern (33 bp):
TTGTATTATTATTGTGGCATATTATTTGCATTC
Found at i:87339323 original size:53 final size:54
Alignment explanation
Indices: 87339261--87339449 Score: 175
Period size: 54 Copynumber: 3.5 Consensus size: 54
87339251 ATTCCGATGT
** * *
87339261 CTTGACATGGTCTTATGTGGTGTCCTTGCCTTAT-GAACTCACCATTGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGC
* * * * ** * * *
87339314 CTTGGCATGGTCTTACATAGG-ATCTTTGCATTATCGTAGTTTATCAATGCCATGT
1 CTTGACATGGTCTTACAT-GGTATCCTTGCCTTATAG-AACTCACCAATGCCATGC
* * * *
87339369 CTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTCACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGC
* *
87339423 CTTGGCATGGTCTTACTTGGTATCCTT
1 CTTGACATGGTCTTACATGGTATCCTT
87339450 AAACTCTAAT
Statistics
Matches: 103, Mismatches: 29, Indels: 7
0.74 0.21 0.05
Matches are distributed among these distances:
53 25 0.24
54 40 0.39
55 38 0.37
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.38
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGC
Found at i:87344440 original size:35 final size:34
Alignment explanation
Indices: 87344394--87344463 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 34
87344384 ATGGTTGAGC
87344394 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGATGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCG-TGA
87344429 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA
87344463 A
1 A
87344464 ATGTAACTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (34 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA
Found at i:87344460 original size:20 final size:20
Alignment explanation
Indices: 87344402--87344460 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 20
87344392 GCATCCGAAC
87344402 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
* **
87344422 TC---GA--TGAATCCGAAC
1 TCGTTGAGTTGAGTCCGAGT
87344437 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
87344457 TCGT
1 TCGT
87344461 GAAATGTAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 10
0.64 0.14 0.23
Matches are distributed among these distances:
15 10 0.36
17 2 0.07
18 2 0.07
20 14 0.50
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.32
Consensus pattern (20 bp):
TCGTTGAGTTGAGTCCGAGT
Found at i:87348960 original size:37 final size:37
Alignment explanation
Indices: 87348858--87348979 Score: 176
Period size: 37 Copynumber: 3.4 Consensus size: 37
87348848 CCTCATGAGA
87348858 GGAATTATCCTACTCACGATTTGGAATTGGCTGCAGT
1 GGAATTATCCTACTCACGATTTGGAATTGGCTGCAGT
** * * * *
87348895 GGTGTT-TGCT-TTGAAGATTTGGAATTGGCTGCAGT
1 GGAATTATCCTACTCACGATTTGGAATTGGCTGCAGT
87348930 GGAATTATCCTACTCACGATTTGGAATTGGCTGCAGT
1 GGAATTATCCTACTCACGATTTGGAATTGGCTGCAGT
87348967 GGAATTATCCTAC
1 GGAATTATCCTAC
87348980 ATTATTTGTA
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
35 26 0.37
36 6 0.08
37 39 0.55
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.34
Consensus pattern (37 bp):
GGAATTATCCTACTCACGATTTGGAATTGGCTGCAGT
Found at i:87351272 original size:46 final size:46
Alignment explanation
Indices: 87351108--87351278 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
87351098 GGTTGAGCAT
* *
87351108 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-CGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
87351153 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
87351198 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
87351246 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
87351279 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 4 0.04
44 2 0.02
45 29 0.28
46 32 0.30
47 28 0.27
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:87354949 original size:23 final size:23
Alignment explanation
Indices: 87354918--87354967 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
87354908 AAGAACCAAC
87354918 TAAA-CTCTTGCTCTAATAACAA
1 TAAATCTCTTGCTCTAATAACAA
*
87354940 TAAATCTCTTGCTCTAATACCAA
1 TAAATCTCTTGCTCTAATAACAA
87354963 TAAAT
1 TAAAT
87354968 GTAACATCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.34
Consensus pattern (23 bp):
TAAATCTCTTGCTCTAATAACAA
Found at i:87356333 original size:53 final size:53
Alignment explanation
Indices: 87356253--87356458 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 53
87356243 TTCCTTTTTA
* * * *
87356253 AACTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * *
87356306 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGAACTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * * * *
87356360 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTGTA--
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCT-TATG
* *
87356413 AAGCTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AA-CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
87356459 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
52 1 0.01
53 80 0.66
54 1 0.01
55 37 0.31
56 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:87363514 original size:27 final size:26
Alignment explanation
Indices: 87363458--87363568 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
87363448 AGAATGGCTG
* *
87363458 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
87363484 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
*
87363511 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* **
87363538 CCAGATCAGATAATTGTGGCATTGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
87363565 CCAG
1 CCAG
87363569 GATGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 15 0.20
27 58 0.77
28 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:87365011 original size:24 final size:24
Alignment explanation
Indices: 87364976--87365050 Score: 132
Period size: 24 Copynumber: 3.1 Consensus size: 24
87364966 CCAACACTGT
*
87364976 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
87365000 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
87365024 TCTCCCTTATTAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
87365048 TCT
1 TCT
87365051 ACTGACAGAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.21, C:0.40, G:0.04, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:87367130 original size:53 final size:53
Alignment explanation
Indices: 87367047--87367180 Score: 205
Period size: 53 Copynumber: 2.5 Consensus size: 53
87367037 GTCGCTACAA
* * *
87367047 GGGATTTAGCCTGTATTAGTAATCCTAACATCACCCTATGAGTTGATATTACG
1 GGGATTTAGCCTGAATTGGTAATCCCAACATCACCCTATGAGTTGATATTACG
*
87367100 GGGATTTAGCCTAAATTGGTAATCCCAACATCACCCTATGAGTTGATATTACG
1 GGGATTTAGCCTGAATTGGTAATCCCAACATCACCCTATGAGTTGATATTACG
* *
87367153 GGAGAATTAGCCTGGATTGGTAATCCCA
1 GG-GATTTAGCCTGAATTGGTAATCCCA
87367181 CCGTAAGATG
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 51 0.70
54 22 0.30
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (53 bp):
GGGATTTAGCCTGAATTGGTAATCCCAACATCACCCTATGAGTTGATATTACG
Found at i:87369234 original size:46 final size:44
Alignment explanation
Indices: 87369091--87369234 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
87369081 ACCGCCCCTA
* *
87369091 AGTGAACTCGGACTCAACTCAACAAGTTTGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
87369138 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
87369184 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
87369230 AGTGA
1 AGTGA
87369235 CATGTCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 33 0.42
47 29 0.37
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:87376665 original size:47 final size:49
Alignment explanation
Indices: 87376591--87376720 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 49
87376581 AACCCGCCCC
*
87376591 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATCCA
* *
87376639 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA
*
87376684 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
87376721 TCAACCATCC
Statistics
Matches: 70, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.41
47 29 0.41
48 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA
Found at i:87376736 original size:46 final size:44
Alignment explanation
Indices: 87376593--87376736 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
87376583 CCCGCCCCTA
87376593 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
87376640 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
87376686 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
87376732 AGTGA
1 AGTGA
87376737 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:87377940 original size:11 final size:11
Alignment explanation
Indices: 87377913--87377942 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
87377903 CAATCATATC
*
87377913 ATAATCATAAA
1 ATAATTATAAA
87377924 ATAATTATAAA
1 ATAATTATAAA
87377935 ATAATTAT
1 ATAATTAT
87377943 TTCTATCTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAATTATAAA
Found at i:87382768 original size:53 final size:54
Alignment explanation
Indices: 87382586--87382791 Score: 234
Period size: 53 Copynumber: 3.8 Consensus size: 54
87382576 ATTAGGGTTT
* * * * *
87382586 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTATTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTATCATAAGGC
* * * * * * *
87382640 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTATCATAAGGC
* * * *
87382695 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGT-TCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTATCATAAGGC
* *
87382748 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGT
87382792 TTAAAAAGGA
Statistics
Matches: 125, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 46 0.37
54 36 0.29
55 43 0.34
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.19
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTATCATAAGGC
Found at i:87386570 original size:50 final size:50
Alignment explanation
Indices: 87386486--87386774 Score: 483
Period size: 50 Copynumber: 5.8 Consensus size: 50
87386476 CAAGATAAAT
*
87386486 ATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
* *
87386536 ATACGTATTTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
*
87386586 ATATGTATTTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
* * *
87386636 ATATGTATTTGTGGTAAAGGCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
87386686 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
* *
87386734 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTAAAATAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
87386775 GTAGGAGATG
Statistics
Matches: 226, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
48 44 0.19
49 4 0.02
50 178 0.79
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.33
Consensus pattern (50 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
Found at i:87386973 original size:37 final size:37
Alignment explanation
Indices: 87386923--87386994 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
87386913 GGAAATATAT
*
87386923 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
87386960 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
87386995 CATCTGAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:87389491 original size:43 final size:42
Alignment explanation
Indices: 87389324--87389496 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 42
87389314 ATATCGTACA
* * * * *
87389324 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCACATGTAG
1 ATGCCAATGTCCTAGACGTGGTCTTACACG-AAACACATATCG
* * *
87389367 GTGCCACTGTCCTAGACAG-GGTCTTACACGAATCACA-ATTACG
1 ATGCCAATGTCCTAGAC-GTGGTCTTACACGAAACACATA-T-CG
* ** * **
87389410 GTGCCAATGTCCCCGACATGGTCTTAGTCGAAATCACATATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACACGAAA-CACATATCG
87389453 ATGCCAATGTCCTAGACGTGGTCTTACACGAGAACACATATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACACGA-AACACATATCG
87389496 A
1 A
87389497 AAATCCTATG
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
42 8 0.08
43 87 0.84
44 8 0.08
45 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACGTGGTCTTACACGAAACACATATCG
Found at i:87390639 original size:14 final size:15
Alignment explanation
Indices: 87390622--87390650 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
87390612 GCACAAAAAT
87390622 TTCACACAT-ATAAA
1 TTCACACATAATAAA
87390636 TTCACACATAATAAA
1 TTCACACATAATAAA
87390651 CACTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:87394170 original size:27 final size:27
Alignment explanation
Indices: 87394138--87394249 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
87394128 AGGAAGCGTC
*
87394138 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
87394165 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
87394192 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
87394220 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
87394246 CTGG
1 CTGG
87394250 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.66
28 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:87394244 original size:54 final size:54
Alignment explanation
Indices: 87394138--87394249 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
87394128 AGGAAGCGTC
* *
87394138 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
87394192 CTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
87394246 CTGG
1 CTGG
87394250 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:87401996 original size:27 final size:27
Alignment explanation
Indices: 87401958--87402067 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
87401948 GAAGCGTCCA
*
87401958 GGTGGCTATGCCACAATTATCTGATCT
1 GGTGGCTCTGCCACAATTATCTGATCT
*
87401985 GGTGGCTCTGCCACATATT-TCTGTTCT
1 GGTGGCTCTGCCACA-ATTATCTGATCT
* * *
87402012 GGTGGCTCTGCCACGATTATCTATATTT
1 GGTGGCTCTGCCACAATTATCT-GATCT
* * *
87402040 GGTGACTCTGTCAC-ATTATCTGTTCT
1 GGTGGCTCTGCCACAATTATCTGATCT
87402066 GG
1 GG
87402068 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.10
27 45 0.65
28 17 0.25
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATTATCTGATCT
Found at i:87402062 original size:54 final size:54
Alignment explanation
Indices: 87401958--87402067 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
87401948 GAAGCGTCCA
* *
87401958 GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCT
1 GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCT
* * * * *
87402012 GGTGGCTCTGCCACGATTATCTATATTTGGTGACTCTGTCACAT-TATCTGTTCT
1 GGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTGCCACATATATCTGTTCT
87402066 GG
1 GG
87402068 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCT
Found at i:87404039 original size:38 final size:38
Alignment explanation
Indices: 87403997--87404073 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
87403987 AAAAATGGAC
87403997 AAACAAAGATGATGGCCTTTGTTTTCATTATTTTACTA
1 AAACAAAGATGATGGCCTTTGTTTTCATTATTTTACTA
87404035 AAACAAAGATGATGGCCTTTGTTTTCATTATTTTACTA
1 AAACAAAGATGATGGCCTTTGTTTTCATTATTTTACTA
87404073 A
1 A
87404074 CCTTATTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (38 bp):
AAACAAAGATGATGGCCTTTGTTTTCATTATTTTACTA
Found at i:87404454 original size:20 final size:20
Alignment explanation
Indices: 87404429--87404480 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
87404419 ACTGTTACAC
87404429 TCCATTTACTTACTTGT-CAT
1 TCCATTTACTTACTT-TCCAT
*
87404449 TCCATTTATTTACTTTCCAT
1 TCCATTTACTTACTTTCCAT
*
87404469 TTCATTTACTTA
1 TCCATTTACTTA
87404481 GCATAAACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.21, C:0.23, G:0.02, T:0.54
Consensus pattern (20 bp):
TCCATTTACTTACTTTCCAT
Found at i:87404466 original size:15 final size:16
Alignment explanation
Indices: 87404448--87404479 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
87404438 TTACTTGTCA
87404448 TTCCATTT-ATTTACT
1 TTCCATTTCATTTACT
87404463 TTCCATTTCATTTACT
1 TTCCATTTCATTTACT
87404479 T
1 T
87404480 AGCATAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.59
Consensus pattern (16 bp):
TTCCATTTCATTTACT
Found at i:87405864 original size:18 final size:19
Alignment explanation
Indices: 87405829--87405866 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
87405819 TTTTCTCCAT
*
87405829 AGTAAAATAAAATAATAAA
1 AGTAAAATAAAACAATAAA
*
87405848 AGTAAAA-AAAACCATAAA
1 AGTAAAATAAAACAATAAA
87405866 A
1 A
87405867 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (19 bp):
AGTAAAATAAAACAATAAA
Found at i:87406415 original size:28 final size:27
Alignment explanation
Indices: 87406330--87406418 Score: 101
Period size: 26 Copynumber: 3.2 Consensus size: 27
87406320 GTGACAGAGT
*
87406330 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* *
87406359 CACCAGAACAGAT-A-TAGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
87406385 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
87406413 CACCAG
1 CACCAG
87406419 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 23 0.44
27 1 0.02
28 21 0.40
29 7 0.13
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:87406571 original size:28 final size:28
Alignment explanation
Indices: 87406524--87406588 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
87406514 AAATTAACCC
*
87406524 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
87406552 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
87406580 TAGGGGTAT
1 TAGGGGTAT
87406589 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:87413722 original size:19 final size:19
Alignment explanation
Indices: 87413686--87413724 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
87413676 TTTTCATCAT
* *
87413686 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
87413705 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
87413724 A
1 A
87413725 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:87414228 original size:55 final size:56
Alignment explanation
Indices: 87414163--87414277 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
87414153 AGCATGGCTG
* * *
87414163 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
87414219 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
87414274 CCAG
1 CCAG
87414278 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:87414274 original size:28 final size:27
Alignment explanation
Indices: 87414188--87414277 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
87414178 GTGACAGAGT
*
87414188 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
87414217 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
87414244 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
87414272 CACCAG
1 CACCAG
87414278 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:87414436 original size:28 final size:27
Alignment explanation
Indices: 87414383--87414446 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 27
87414373 AAATTAACCC
*
87414383 TAGGGGTATAAGGTCATTTTGCATACA
1 TAGGGGTATAAGGTAATTTTGCATACA
87414410 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAA-GGTAATTTTGCATACA
87414438 TAGGGGTAT
1 TAGGGGTAT
87414447 TCTAGTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 11 0.31
28 24 0.69
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (27 bp):
TAGGGGTATAAGGTAATTTTGCATACA
Found at i:87414454 original size:28 final size:28
Alignment explanation
Indices: 87414383--87414455 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
87414373 AAATTAACCC
* *
87414383 TAGGGGTATAA-GGTCATTTTGCATACA
1 TAGGGGTATAATAGTAATTTTGCATACA
*
87414410 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATAGTAATTTTGCATACA
**
87414438 TAGGGGTATTCTAGTAAT
1 TAGGGGTATAATAGTAAT
87414456 CTAACTATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 11 0.27
28 30 0.73
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (28 bp):
TAGGGGTATAATAGTAATTTTGCATACA
Found at i:87420469 original size:45 final size:45
Alignment explanation
Indices: 87420417--87420548 Score: 147
Period size: 45 Copynumber: 2.9 Consensus size: 45
87420407 AATCTAATAC
* * * *
87420417 GATGCCAATGTCCCGAACATGGTCTTACACGTAACCACATATATT
1 GATGCCAACGTCCCAAACATGGTCTTACACGAAAACACATATATT
* * *
87420462 GATGCCAACGTCCCAAACGTGGTCTTACATGAAAACATATATATT
1 GATGCCAACGTCCCAAACATGGTCTTACACGAAAACACATATATT
* * ** * *
87420507 GATGCCAACATCCCAGATGTGGTCTTACTCGAAAATACATAT
1 GATGCCAACGTCCCAAACATGGTCTTACACGAAAACACATAT
87420549 CAAAATCCTA
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (45 bp):
GATGCCAACGTCCCAAACATGGTCTTACACGAAAACACATATATT
Found at i:87423209 original size:25 final size:25
Alignment explanation
Indices: 87423163--87423213 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
87423153 CCCTTATAAT
* *
87423163 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCTTTATACCCCTAG
87423188 GTGAAAATGA-CTATTATACCCCTAG
1 GTGAAAATGACCT-TTATACCCCTAG
87423213 G
1 G
87423214 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCCTAG
Found at i:87423272 original size:10 final size:10
Alignment explanation
Indices: 87423257--87423291 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
87423247 TTTGTACATA
87423257 ATATGCCATG
1 ATATGCCATG
87423267 ATATGCACATG
1 ATATGC-CATG
87423278 ATATGCCATG
1 ATATGCCATG
87423288 ATAT
1 ATAT
87423292 ATGCATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:87423276 original size:21 final size:21
Alignment explanation
Indices: 87423252--87423291 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
87423242 ACTGATTTGT
87423252 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
87423273 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
87423292 ATGCATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:87423640 original size:31 final size:31
Alignment explanation
Indices: 87423602--87423678 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
87423592 TATTTACCGT
*
87423602 AAAGGCTTCGACCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
87423633 AAAGGCTTCGGCCCAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
87423664 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
87423679 ATATATGCTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:87427023 original size:36 final size:36
Alignment explanation
Indices: 87426971--87427041 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
87426961 TAACTATTCC
*
87426971 TATGGTTCGTACGGGGCTTTTGAACGTCATTACATG
1 TATGGTTCGTACGGGGCTTTCGAACGTCATTACATG
* *
87427007 TATGGTTCGTATGGGGCTTTCGGACGTCATTACAT
1 TATGGTTCGTACGGGGCTTTCGAACGTCATTACAT
87427042 TATCGAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.18, C:0.17, G:0.28, T:0.37
Consensus pattern (36 bp):
TATGGTTCGTACGGGGCTTTCGAACGTCATTACATG
Found at i:87431354 original size:67 final size:63
Alignment explanation
Indices: 87431214--87431394 Score: 195
Period size: 67 Copynumber: 2.8 Consensus size: 63
87431204 CATAATTTTG
* * * * * * *
87431214 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACAACCCATGTGACCTAGCCAGTTTATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTAGTTTATCCCGTA
* *
87431277 GCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACCCATGCGACCTAGCTA-TATATATCCC
1 GCTCTCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTAGT-T-TATCCC
87431341 GTA
61 GTA
* *
87431344 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTA
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTA
87431395 CACCATAATG
Statistics
Matches: 100, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 27 0.27
65 1 0.01
66 25 0.25
67 28 0.28
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (63 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTAGTTTATCCCGTA
Found at i:87436037 original size:30 final size:30
Alignment explanation
Indices: 87436001--87436060 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
87435991 TTCCCGAGCC
* *
87436001 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
* *
87436031 TAGGGGCAAAAATATAATTTTGCCAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
87436061 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATGCAAAAGTT
Found at i:87442823 original size:43 final size:42
Alignment explanation
Indices: 87442713--87442837 Score: 112
Period size: 42 Copynumber: 2.9 Consensus size: 42
87442703 ATGCCAACGT
* * *
87442713 CCCAGTCATGGTCTTACA-TGTAATCAAATATCGATGCCACTGT
1 CCCAGACATGGTCTTACACT-AAATCAAATA-CGATGCCACTGC
* * * *
87442756 CCTAGACA-GGATCTTGCACGAAATCAAATACGATGCCAGTGC
1 CCCAGACATGG-TCTTACACTAAATCAAATACGATGCCACTGC
87442798 CCCAGACATGGTCTTACACATAAATCTCAAAT-CGATGCCA
1 CCCAGACATGGTCTTACAC-TAAA--TCAAATACGATGCCA
87442838 ACATCCCAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
42 26 0.39
43 26 0.39
44 8 0.12
45 6 0.09
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
CCCAGACATGGTCTTACACTAAATCAAATACGATGCCACTGC
Found at i:87443934 original size:18 final size:18
Alignment explanation
Indices: 87443911--87443946 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
87443901 GCCACTTTTA
87443911 CATTTTACGCAATTAAGT
1 CATTTTACGCAATTAAGT
* *
87443929 CATTTTTCTCAATTAAGT
1 CATTTTACGCAATTAAGT
87443947 ACACAAACGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (18 bp):
CATTTTACGCAATTAAGT
Found at i:87454569 original size:44 final size:44
Alignment explanation
Indices: 87454506--87454609 Score: 172
Period size: 44 Copynumber: 2.4 Consensus size: 44
87454496 GGATTCTGAC
* *
87454506 TTATGTGTACGAGTAAGACCGTGGCATCGATATGTGATTTCGAT
1 TTATGTGTACAAGTAAGACCATGGCATCGATATGTGATTTCGAT
*
87454550 TTATGTGTGCAAGTAAGACCATGGCATCGATATGTGATTTCGAT
1 TTATGTGTACAAGTAAGACCATGGCATCGATATGTGATTTCGAT
*
87454594 TTATGTGTACGAGTAA
1 TTATGTGTACAAGTAA
87454610 AACCCTATCT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.35
Consensus pattern (44 bp):
TTATGTGTACAAGTAAGACCATGGCATCGATATGTGATTTCGAT
Found at i:87457274 original size:79 final size:81
Alignment explanation
Indices: 87457142--87457322 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
87457132 ATGATGTCCT
* *
87457142 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
*
87457206 CGAGATACTA-ATTCCG
66 CGAGATACTATA-ACCG
* * * **
87457222 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTGT
*
87457284 GCGAGTTACTATAACCG
65 GCGAGATACTATAACCG
*
87457301 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
87457323 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 57 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
CGAGATACTATAACCG
Found at i:87457336 original size:40 final size:40
Alignment explanation
Indices: 87457142--87457322 Score: 201
Period size: 40 Copynumber: 4.5 Consensus size: 40
87457132 ATGATGTCCT
* * * *
87457142 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCG
* * *
87457182 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCG
87457222 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
* *
87457261 GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
*
87457301 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
87457323 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
Found at i:87457344 original size:79 final size:79
Alignment explanation
Indices: 87457191--87457355 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
87457181 GGACTAAGAT
* * **
87457191 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
87457256 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
87457270 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
87457333 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
87457349 CCGAAGG
1 CCGAAGG
87457356 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Done.