Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 28 of 325
Found at i:10462995 original size:21 final size:23
Alignment explanation
Indices: 10462954--10462998 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
10462944 ATACAATCTC
10462954 TTCTCTCCTCAAAATAACATCGA
1 TTCTCTCCTCAAAATAACATCGA
*
10462977 TTCT-TCCTC-AAATACCATCGA
1 TTCTCTCCTCAAAATAACATCGA
10462998 T
1 T
10462999 CCCCCATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.57
22 5 0.24
23 4 0.19
ACGTcount: A:0.31, C:0.31, G:0.04, T:0.33
Consensus pattern (23 bp):
TTCTCTCCTCAAAATAACATCGA
Found at i:10465144 original size:17 final size:17
Alignment explanation
Indices: 10465122--10465154 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10465112 ACTTTCTCTA
10465122 TTTTATTATTATTTATG
1 TTTTATTATTATTTATG
*
10465139 TTTTATTTTTATTTAT
1 TTTTATTATTATTTAT
10465155 TAATTATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTATTATTATTTATG
Found at i:10469236 original size:13 final size:13
Alignment explanation
Indices: 10469218--10469243 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10469208 AGCAACATTT
10469218 GCTTGTGAGCTAG
1 GCTTGTGAGCTAG
10469231 GCTTGTGAGCTAG
1 GCTTGTGAGCTAG
10469244 TATCCCCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.38, T:0.31
Consensus pattern (13 bp):
GCTTGTGAGCTAG
Found at i:10472371 original size:27 final size:26
Alignment explanation
Indices: 10472313--10472388 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
10472303 CAATTAAGTT
*
10472313 TATTTAAAATAAAAATATTAA-ATTTAA
1 TATTTAAAATAAAAA-A-TAATATTAAA
10472340 -A-TTAAAAGTAAAAAATAATATTAAA
1 TATTTAAAA-TAAAAAATAATATTAAA
*
10472365 TATTTAAATATTAAAAATAATATT
1 TATTTAAA-ATAAAAAATAATATT
10472389 TTTGACTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
24 3 0.07
25 12 0.29
26 8 0.19
27 18 0.43
28 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (26 bp):
TATTTAAAATAAAAAATAATATTAAA
Found at i:10472521 original size:34 final size:33
Alignment explanation
Indices: 10472471--10472555 Score: 84
Period size: 34 Copynumber: 2.5 Consensus size: 33
10472461 TTAATATTTT
* *
10472471 AATATTATATATTATATTAA-TTAAAAATGTAAAA
1 AATAATATATAATATATTAATTTAAAAAT-T-AAA
* * *
10472505 AATCATATATAATATATAAATTTTAAAAATTCAA
1 AATAATATATAATATATTAA-TTTAAAAATTAAA
10472539 AATAATATATAA-ATATT
1 AATAATATATAATATATT
10472556 GAAAATATTA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
33 4 0.10
34 29 0.69
35 1 0.02
36 8 0.19
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.40
Consensus pattern (33 bp):
AATAATATATAATATATTAATTTAAAAATTAAA
Found at i:10472525 original size:27 final size:26
Alignment explanation
Indices: 10472495--10472552 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
10472485 TATTAATTAA
*
10472495 AAATGTAAAAAATCATATATAATATAT
1 AAATGTAAAAAATCA-AAATAATATAT
* *
10472522 AAATTTTAAAAATTCAAAATAATATAT
1 AAA-TGTAAAAAATCAAAATAATATAT
10472549 AAAT
1 AAAT
10472553 ATTGAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.04
27 16 0.59
28 10 0.37
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (26 bp):
AAATGTAAAAAATCAAAATAATATAT
Found at i:10472551 original size:20 final size:18
Alignment explanation
Indices: 10472528--10472570 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
10472518 ATATAAATTT
10472528 TAAAAATTCAAAATAATATA
1 TAAAAATTCAAAAT-AT-TA
* *
10472548 TAAATATTGAAAATATTA
1 TAAAAATTCAAAATATTA
10472566 TAAAA
1 TAAAA
10472571 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 6 0.30
19 2 0.10
20 12 0.60
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (18 bp):
TAAAAATTCAAAATATTA
Found at i:10472752 original size:14 final size:14
Alignment explanation
Indices: 10472733--10472766 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
10472723 TTTTCTGAAT
10472733 TTTTTATATTTT-TA
1 TTTTTAT-TTTTATA
10472747 TTTTTATTTTTATA
1 TTTTTATTTTTATA
10472761 TTTTTA
1 TTTTTA
10472767 ACATGTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTATTTTTATA
Found at i:10476822 original size:14 final size:14
Alignment explanation
Indices: 10476793--10476836 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
10476783 TCATTCTATT
*
10476793 TTATTATATAAATA
1 TTATAATATAAATA
10476807 TTA-AATATACAATA
1 TTATAATATA-AATA
10476821 TTATAATATAAATA
1 TTATAATATAAATA
10476835 TT
1 TT
10476837 TAAAAATCGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 5 0.19
14 16 0.59
15 6 0.22
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
TTATAATATAAATA
Found at i:10478276 original size:10 final size:10
Alignment explanation
Indices: 10478261--10478292 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
10478251 ATACTTCTTT
*
10478261 TATATATATA
1 TATATAAATA
10478271 TATATAAATA
1 TATATAAATA
10478281 TATATAAATA
1 TATATAAATA
10478291 TA
1 TA
10478293 AGCTTTAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TATATAAATA
Found at i:10482202 original size:16 final size:15
Alignment explanation
Indices: 10482181--10482234 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 15
10482171 GATGTGAATA
10482181 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
10482197 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
10482212 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
10482228 AATAAAA
1 -ATAAAA
10482235 AAATGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
15 8 0.23
16 25 0.71
17 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:10482204 original size:24 final size:24
Alignment explanation
Indices: 10482177--10482234 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
10482167 TAATGATGTG
*
10482177 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
10482201 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
10482225 AATAATAAAA
1 AATAATAAAA
10482235 AAATGTACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 6 0.21
24 23 0.79
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:10482211 original size:8 final size:8
Alignment explanation
Indices: 10482177--10482234 Score: 64
Period size: 8 Copynumber: 7.2 Consensus size: 8
10482167 TAATGATGTG
*
10482177 AATAATAA
1 AATATTAA
10482185 AATATATAA
1 AATAT-TAA
10482194 AATA-TAA
1 AATATTAA
10482201 AATATTAA
1 AATATTAA
*
10482209 AATATCAA
1 AATATTAA
*
10482217 AATATTAG
1 AATATTAA
*
10482225 AATAATAA
1 AATATTAA
10482233 AA
1 AA
10482235 AAATGTACAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
7 7 0.17
8 28 0.67
9 7 0.17
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (8 bp):
AATATTAA
Found at i:10482439 original size:15 final size:14
Alignment explanation
Indices: 10482418--10482484 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
10482408 ATAACATGTA
10482418 AAAAATATATATAT
1 AAAAATATATATAT
10482432 AAATAATATA-ATATT
1 AAA-AATATATATA-T
* *
10482447 AAAGATATATACAT
1 AAAAATATATATAT
*
10482461 -AAAATA-GTATA-
1 AAAAATATATATAT
*
10482472 AAATATATATATA
1 AAAAATATATATA
10482485 CGTAATATAG
Statistics
Matches: 41, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
12 8 0.20
13 9 0.22
14 12 0.29
15 12 0.29
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (14 bp):
AAAAATATATATAT
Found at i:10482457 original size:31 final size:31
Alignment explanation
Indices: 10482395--10482472 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
10482385 TATAGTTAAG
* *
10482395 ATATATACATAAGATAACATGTAAAAAATAT
1 ATATATAAATAATATAACATGTAAAAAATAT
* *
10482426 ATATATAAATAATATAATAT-T-AAAGATAT
1 ATATATAAATAATATAACATGTAAAAAATAT
* *
10482455 ATACATAAAATAGTATAA
1 ATATAT-AAATAATATAA
10482473 AATATATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 12 0.30
30 11 0.28
31 17 0.43
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (31 bp):
ATATATAAATAATATAACATGTAAAAAATAT
Found at i:10482462 original size:25 final size:25
Alignment explanation
Indices: 10482336--10482559 Score: 92
Period size: 25 Copynumber: 9.0 Consensus size: 25
10482326 TAAATACGTG
* *
10482336 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
10482361 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
10482386 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
10482408 ATAACATGTAAAAAATATATATATAAATAAT
1 ATAATAT-T----AA-AGATATATACATAAT
*
10482439 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * * *
10482464 ATAGTATAAAATATATATATACGTAAT
1 ATAATAT-TAA-AGATATATACATAAT
* * *
10482491 ATAGA-ATTTAA-A-ATATACCTGAT
1 ATA-ATATTAAAGATATATACATAAT
* *
10482514 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
10482536 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
10482559 A
1 A
10482560 ACAAAAAAGG
Statistics
Matches: 150, Mismatches: 32, Indels: 36
0.69 0.15 0.17
Matches are distributed among these distances:
21 4 0.03
22 26 0.17
23 27 0.18
24 8 0.05
25 43 0.29
26 5 0.03
27 17 0.11
30 2 0.01
31 18 0.12
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:10482481 original size:27 final size:27
Alignment explanation
Indices: 10482348--10482494 Score: 108
Period size: 27 Copynumber: 5.6 Consensus size: 27
10482338 AATATTAAAA
* * *
10482348 ATATGTACATAATATAGTGTTAAA-A-
1 ATATATACATAATATAGTATAAAATAT
* *
10482373 ATACATACATAATATAGT-TAAGATAT
1 ATATATACATAATATAGTATAAAATAT
* * * *
10482399 ATACATAAGATAACAT-GTAAAAAATAT
1 ATATAT-ACATAATATAGTATAAAATAT
* * * *
10482426 ATATATAAATAATATAATAT-TAA-AG
1 ATATATACATAATATAGTATAAAATAT
*
10482451 ATATATACATAAAATAGTATAAAATAT
1 ATATATACATAATATAGTATAAAATAT
*
10482478 ATATATACGTAATATAG
1 ATATATACATAATATAG
10482495 AATTTAAAAT
Statistics
Matches: 93, Mismatches: 22, Indels: 12
0.73 0.17 0.09
Matches are distributed among these distances:
24 3 0.03
25 35 0.38
26 19 0.20
27 36 0.39
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.33
Consensus pattern (27 bp):
ATATATACATAATATAGTATAAAATAT
Found at i:10483085 original size:30 final size:30
Alignment explanation
Indices: 10483049--10483193 Score: 218
Period size: 30 Copynumber: 4.8 Consensus size: 30
10483039 TAGGTACAAG
* *
10483049 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
10483079 TGGTGGTGGAAAAAGAGTAGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* **
10483109 TGGTGGTGGAAAAGGTGTGGCTAGAAGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
10483139 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
10483169 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
10483194 TGAGAAAAGT
Statistics
Matches: 101, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 101 1.00
ACGTcount: A:0.25, C:0.03, G:0.48, T:0.24
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:10483142 original size:60 final size:60
Alignment explanation
Indices: 10483049--10483192 Score: 243
Period size: 60 Copynumber: 2.4 Consensus size: 60
10483039 TAGGTACAAG
* **
10483049 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTAGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGAAGAGTTGGTGGTGGAAAAAGAGTAGCTAGTGGAGT
*
10483109 TGGTGGTGGAAAAGGTGTGGCTAGAAGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGAAGAGTTGGTGGTGGAAAAAGAGTAGCTAGTGGAGT
*
10483169 TGGTGGTGGAAAAGGAGTGGCTAG
1 TGGTGGTGGAAAAGGTGTGGCTAG
10483193 TTGAGAAAAG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 79 1.00
ACGTcount: A:0.25, C:0.03, G:0.48, T:0.24
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGAAGAGTTGGTGGTGGAAAAAGAGTAGCTAGTGGAGT
Found at i:10483961 original size:14 final size:14
Alignment explanation
Indices: 10483942--10483991 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
10483932 GAGTTGATTT
* *
10483942 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
10483956 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
10483971 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
10483985 TT-AAAAA
1 TTGAAAAA
10483992 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:10484171 original size:76 final size:75
Alignment explanation
Indices: 10484014--10484348 Score: 462
Period size: 76 Copynumber: 4.5 Consensus size: 75
10484004 TGAGCCGTGA
* *
10484014 CTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAATTGAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
10484077 TGTCCCGAGG
66 TGTCCCGAGG
* * * *
10484087 CTCTACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAA-TTGAAAATACCTCAGC
*
10484152 GTGTCCTGAGG
65 GTGTCCCGAGG
* * *
10484163 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAAAGACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGACAAACAGAAATTGAAAATACCTCAGC
** *
10484228 ATGTGAGCCGAGA
65 --GTGTCCCGAGG
* *
10484241 CTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAATTGAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
10484304 TGTCCCCGAGG
66 TGT-CCCGAGG
10484315 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
10484349 GAAAAATATA
Statistics
Matches: 226, Mismatches: 27, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
73 28 0.12
74 33 0.15
75 46 0.20
76 68 0.30
77 17 0.08
78 34 0.15
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (75 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
TGTCCCGAGG
Found at i:10484282 original size:152 final size:152
Alignment explanation
Indices: 10483971--10484348 Score: 480
Period size: 152 Copynumber: 2.5 Consensus size: 152
10483961 AAAACAGAAA
* * * ** * *
10483971 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGTGACTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGT-CCCCGAGGCTCAACTCACCTCTCGCAATAT
* ** * * *
10484036 GAGTT-A--ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCTACTCACC
65 GAGTTGATTTTTTTTGACAAACAGAAATTGAAAAGACCTCAGCGTGACCCGAGACTCAACTCACC
* *
10484098 TTTCGCAATATGAGTTGATTTTT
130 TCTCGCAATATGAGTTGATATTT
*
10484121 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCCCGAGGCTCAACTCACCTCTCGCAATAT
* * *
10484185 GAGTTGATTTTTTTTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCA
65 GAGTTGATTTTTTTTGACAAACAGAAATTGAAAAGACCTCAGC--GTGACCCGAGACTCAACTCA
10484250 CCTCTCGCAATATGAGTT-A-ATTT
128 CCTCTCGCAATATGAGTTGATATTT
* * *
10484273 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCCGAGGCTCAACTCACCTCTCGCAATATG
10484338 AGTTGATTTTT
66 AGTTGATTTTT
10484349 GAAAAATATA
Statistics
Matches: 199, Mismatches: 22, Indels: 12
0.85 0.09 0.05
Matches are distributed among these distances:
149 30 0.15
150 14 0.07
151 36 0.18
152 85 0.43
153 1 0.01
154 33 0.17
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (152 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTTGACAAACAGAAATTGAAAAGACCTCAGCGTGACCCGAGACTCAACTCACCT
CTCGCAATATGAGTTGATATTT
Found at i:10484442 original size:256 final size:252
Alignment explanation
Indices: 10484129--10485119 Score: 782
Period size: 256 Copynumber: 3.9 Consensus size: 252
10484119 TTTTGAAAAA
* * *
10484129 CAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 CAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGA-T
* * * *
10484194 TTTTTTTACGAACAGAAATTG-AAAAGACCTCAGCATGTGAGCC-GAGACTCAACTCACCTCTCG
65 TTTTTTGACAAACAGAAATTGAAAAAGACCTCAGCATGTAAGCCAAAG-CTCAACTCACCTCTCG
* ** *
10484257 CAATATGAGTT-AATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCCGAGGCTCAAC
129 CAATATGAGTTGAATTTTTGAAAAACAGAAATTGAAAACACCTCAGCATGT----GAGGCTCAAC
*
10484321 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAAGG
190 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAAACAGAAATTGAAAGG
*
10484384 CAGAAA-TTAAAAAGACCTCAGCATGTGAGCC-GAGACTCAACTCACCTTTCGCAATATGAGTTG
1 CAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGACTCAACTCACCTCTCGCAATATGAGTTG
* *
10484447 ATTTTTTTGACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAAGCTCAACTCACCTCTC
63 ATTTTTTTGACAAACAGAAATTGAAAAAGACCTCAGCATGTAAGCCAAAGCTCAACTCACCTCTC
* *
10484512 GCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCA
128 GCAATATGAGTTGAATTTTTGAAAAACAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCA
*
10484577 CCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTG----AGCAGAAATT-----G
193 CCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAAACAGAAATTGAAAGG
* * **
10484628 -A-AAA--T------ACCTCAACG-GGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA-
1 CAGAAATTTAAAAAGACCTCAGCGTGG-CCTGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
** * * * ** * * *
10484681 TTTTTTG---ATGATAAATTG-AAAATACCTCA--ATGTGA-CTTGAGGTTCAACTCACCTCTCA
65 TTTTTTGACAAACAGAAATTGAAAAAGACCTCAGCATGTAAGC-CAAAGCTCAACTCACCTCTCG
* * *
10484739 CAATATGAGTTGATTTTTTGAATTAAAATAGAAATTGAAAATAGAAATGGAAAACACCTCAGCGT
129 CAATATGAGTTGAATTTTTG-----AAA-A-ACA--G-AAAT-----T-GAAAACACCTCAGCAT
* * * * * *
10484804 CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAAAAA
178 -GTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACATAAATTGAAAAAAC
**
10484869 AGAAATT-AAAAA
240 AGAAATTGAAAGG
* * * *
10484881 CAG-AATTTGAAAGGACCTCGACGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGA
1 CAGAAATTTAAAAAGACCTC-A-GCGTGGCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGA
* * * * * * * * *
10484945 TTCTTTT-AAAAAGCAAAAATTG-AAAATACCTCAACGTGT--CCCGAGGCTCAACTCACCTCTC
64 TTTTTTTGACAAA-CAGAAATTGAAAAAGACCTCAGCATGTAAGCCAAAGCTCAACTCACCTCTC
* * * * * *
10485006 GTAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATATCTCAGCATGTCCTGAGGCTC
128 GCAATATGAGTTGA-ATTTTTG--AAAAACAGAAATTGAAAACACCTCAGCATG---TGAGGCTC
* *
10485071 AACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAA
187 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAA
10485120 TTACCTCAGC
Statistics
Matches: 603, Mismatches: 72, Indels: 122
0.76 0.09 0.15
Matches are distributed among these distances:
225 1 0.00
226 40 0.07
228 11 0.02
229 8 0.01
231 4 0.01
232 10 0.02
233 33 0.05
235 8 0.01
236 4 0.01
241 2 0.00
242 18 0.03
243 33 0.05
244 1 0.00
245 18 0.03
249 17 0.03
253 52 0.09
254 18 0.03
255 58 0.10
256 82 0.14
257 69 0.11
261 3 0.00
262 6 0.01
263 1 0.00
264 35 0.06
265 8 0.01
266 3 0.00
267 1 0.00
268 48 0.08
269 8 0.01
270 3 0.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (252 bp):
CAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTGACAAACAGAAATTGAAAAAGACCTCAGCATGTAAGCCAAAGCTCAACTCACCTCTCGCA
ATATGAGTTGAATTTTTGAAAAACAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAAACAGAAATTGAAAGG
Found at i:10484506 original size:78 final size:75
Alignment explanation
Indices: 10484384--10484617 Score: 300
Period size: 78 Copynumber: 3.1 Consensus size: 75
10484374 AATTGAAAGG
* * *
10484384 CAGAAATT-AAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTTTCGCAATATGAGTTGA
1 CAGAAATTGAAAAACACCTCAGCATGT-AGCCAAG-CTCAACTCACCTCTCGCAATATGAGTTGA
*
10484448 TTTTTTTGACAAA
64 -TTTTTTGAAAAA
* *
10484461 CAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAAGCTCAACTCACCTCTCGCAATATGAGTTGA
1 CAGAAATTGAAAAACACCTCAGCATGT-AGCC-AAGCTCAACTCACCTCTCGCAATATGAGTTGA
10484526 TTTTTTGAAAAA
64 TTTTTTGAAAAA
* *
10484538 TAGAAATTG-AAAACACCTCAGCATGT-G--AGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
1 CAGAAATTGAAAAACACCTCAGCATGTAGCCAAGCTCAACTCACCTCTCGCAATATGAGTTGATT
10484598 TTTTGAAAAA
66 TTTTGAAAAA
*
10484608 CATAAATTGA
1 CAGAAATTGA
10484618 GCAGAAATTG
Statistics
Matches: 142, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
70 18 0.13
71 31 0.22
74 1 0.01
76 15 0.11
77 27 0.19
78 48 0.34
79 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (75 bp):
CAGAAATTGAAAAACACCTCAGCATGTAGCCAAGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTGAAAAA
Found at i:10484586 original size:71 final size:71
Alignment explanation
Indices: 10484385--10484781 Score: 309
Period size: 71 Copynumber: 5.2 Consensus size: 71
10484375 ATTGAAAGGC
* * *
10484385 AGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTTTCGCAATATGAGTTGATT
1 AGAAATTGAAAATACCTCAGCATGTGA---G-G-CTCAACTCACCTCTCGCAATATGAGTTGA-T
* *
10484450 TTTTTGACAAAC
60 TTTTTGAAAAAT
* *
10484462 AGAAATTGAAAAATACCTCAGCGTGTAAGCCAAAGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGAAATTG-AAAATACCTCAGCATGT--G---AGGCTCAACTCACCTCTCGCAATATGAGTTGAT
10484527 TTTTTGAAAAAT
60 TTTTTGAAAAAT
*
10484539 AGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
1 AGAAATTGAAAATACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
10484603 AAAAACATAAATT
66 ----A-A-AAA-T
** * *
10484616 GAGCAGAAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
1 ----AGAAATTGAAAATACCTC-A-GCAT-GTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
**
10484681 TTTTTTG-ATGAT
59 TTTTTTGAAAAAT
* * *
10484693 --AAATTGAAAATACCTCAATGTGACT-TGAGGTTCAACTCACCTCTCACAATATGAGTTGATTT
1 AGAAATTGAAAATACCTC-A-G-CA-TGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
10484755 TTTGAATTAAAAT
62 TTTG-A--AAAAT
10484768 AGAAATTGAAAATA
1 AGAAATTGAAAATA
10484782 GAAATGGAAA
Statistics
Matches: 269, Mismatches: 22, Indels: 58
0.77 0.06 0.17
Matches are distributed among these distances:
70 6 0.02
71 90 0.33
72 1 0.00
73 1 0.00
74 2 0.01
75 4 0.01
76 18 0.07
77 40 0.15
78 44 0.16
79 2 0.01
80 1 0.00
81 17 0.06
82 1 0.00
83 3 0.01
84 33 0.12
85 6 0.02
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (71 bp):
AGAAATTGAAAATACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAAAAT
Found at i:10484722 original size:155 final size:155
Alignment explanation
Indices: 10484498--10484850 Score: 441
Period size: 155 Copynumber: 2.2 Consensus size: 155
10484488 AAGCCAAAGC
10484498 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTCAGCATG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATA-AAATTGAAAACACCTCAGCATG
* *
10484563 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA-AAACAT-AAATTG-AGCAGAA
65 TGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATAAA-ATAAAATTGAAACAGAA
* * *
10484624 ATTGAAAATACCTCAACGGGTCTTGAGGT
129 ATGGAAAACACCTC-A-GCGTCTTGAGGT
** * *
10484653 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-ATGAT-AAATTGAAAATACCTCAATGTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAAATTGAAAACACCTC-A-G-CA
*
10484716 CT-TGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAATAGAAATTGAAAA
63 -TGTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAA-TAAAATA-AAATTG-AAA
*
10484780 TAGAAATGGAAAACACCTCAGCGTCTTGAGGT
124 CAGAAATGGAAAACACCTCAGCGTCTTGAGGT
*
10484812 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA
10484851 CACATAAATT
Statistics
Matches: 172, Mismatches: 13, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
152 15 0.09
153 1 0.01
154 4 0.02
155 68 0.40
156 9 0.05
157 2 0.01
158 3 0.02
159 44 0.26
160 8 0.05
161 18 0.10
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (155 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAAATTGAAAACACCTCAGCATGT
GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATAAAATAAAATTGAAACAGAAAT
GGAAAACACCTCAGCGTCTTGAGGT
Found at i:10484781 original size:13 final size:13
Alignment explanation
Indices: 10484759--10484792 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
10484749 TGATTTTTTG
10484759 AATT-AAAATAGA
1 AATTGAAAATAGA
10484771 AATTGAAAATAGA
1 AATTGAAAATAGA
*
10484784 AATGGAAAA
1 AATTGAAAA
10484793 CACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.21
Consensus pattern (13 bp):
AATTGAAAATAGA
Found at i:10484881 original size:88 final size:86
Alignment explanation
Indices: 10484716--10484882 Score: 203
Period size: 88 Copynumber: 1.9 Consensus size: 86
10484706 CTCAATGTGA
* * *
10484716 CTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAATAGAAATTGAAAAT
1 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTGAA-TAAAATA-AAATTAAAAAA
*
10484781 AGAAATGGAAAACACCTCAGCGT
64 AGAAATGAAAAACACCTCAGCGT
* *
10484804 CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAA-ACACAT-AAATTAAAAAA
1 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGA-TTTTTTGAATA-AAATAAAATT--AAAA
*
10484867 AAAGAAATTAAAAACA
62 AAAGAAATGAAAAACA
10484883 GAATTTGAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
86 5 0.07
87 1 0.01
88 53 0.78
89 9 0.13
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (86 bp):
CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTGAATAAAATAAAATTAAAAAAAG
AAATGAAAAACACCTCAGCGT
Found at i:10485001 original size:75 final size:74
Alignment explanation
Indices: 10484874--10485192 Score: 331
Period size: 77 Copynumber: 4.3 Consensus size: 74
10484864 AAAAAAGAAA
* * ** * *
10484874 TTAAAAACAGAATTTGAAAGGACCTCGACGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATG
1 TTAAAAACAAAAATTGAAAATACCTCAACGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATG
*
10484939 AGTTGATTCTT
64 AGTTGATTTTT
*
10484950 TTAAAAAGCAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGA
1 TTAAAAA-CAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
10485015 GTTGATTTTT
65 GTTGATTTTT
* * * * *
10485025 TTGATAAAA-ATAGAATTTGAAAATATCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 TT-A-AAAACA-A-AAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
10485089 TGAGTTGA-TTTT
62 TGAGTTGATTTTT
* * * * ** *
10485101 TGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 TTAAAAACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
10485164 TTGATTTTT
66 TTGATTTTT
** * *
10485173 TTTGAAACATAAATTAAAAA
1 TTAAAAACAAAAATTGAAAA
10485193 AACGAAAATT
Statistics
Matches: 206, Mismatches: 30, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
71 36 0.17
72 18 0.09
73 13 0.06
74 4 0.02
75 43 0.21
76 14 0.07
77 78 0.38
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
TTAAAAACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:10485239 original size:160 final size:162
Alignment explanation
Indices: 10485041--10485356 Score: 467
Period size: 160 Copynumber: 1.9 Consensus size: 162
10485031 AAAATAGAAT
* *
10485041 TTGAAAATATCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAC
1 TTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
** ** *
10485105 AAACAAAAATTGAAATTACCTCAGC-GT-CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
66 AAACAAAAATTGAAAGCACCTCAGCGGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
** *
10485168 TTTTTTTTGAAACATAAATTAAAAAAACGAAAA
131 TTTTTGATG-AACAGAAATTAAAAAAACGAAAA
*
10485201 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
1 TTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA
*
10485266 AAAACATAAATTGAAAGCACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
65 AAAACAAAAATTGAAAGCACCTCAGCG-GT-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
10485331 TGATTTTTGATGAACAGAAATTAAAA
128 TGATTTTTGATGAACAGAAATTAAAA
10485357 CTACCTCAAC
Statistics
Matches: 138, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
160 54 0.39
162 29 0.21
164 2 0.01
165 13 0.09
166 40 0.29
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (162 bp):
TTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
AAACAAAAATTGAAAGCACCTCAGCGGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGATGAACAGAAATTAAAAAAACGAAAA
Found at i:10485259 original size:89 final size:87
Alignment explanation
Indices: 10485105--10485277 Score: 267
Period size: 89 Copynumber: 2.0 Consensus size: 87
10485095 GATTTTTGAC
* * *
10485105 AAACAAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
1 AAACAAAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
10485170 TTTTTTG-AAACATAAATTAAAA
65 TTTTTTGAAAACATAAATTAAAA
*
10485192 AAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAAAAATTGAAAATACCTCAGC--GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
10485257 TTTTTTTGAAAAACATAAATT
64 TTTTTTTG-AAAACATAAATT
10485278 GAAAGCACCT
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
87 23 0.29
88 8 0.10
89 36 0.46
90 11 0.14
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (87 bp):
AAACAAAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTGAAAACATAAATTAAAA
Found at i:10485424 original size:75 final size:75
Alignment explanation
Indices: 10485198--10485426 Score: 333
Period size: 75 Copynumber: 3.1 Consensus size: 75
10485188 AAAAAAACGA
10485198 AAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
10485262 TTGAAAAACAT
66 TTG-AAAACAG
* *
10485273 AAATTGAAAGC-ACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
1 AAATTGAAAACTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
10485335 TTTTGATGAACAG
64 TTTTGA-AAACAG
*
10485348 AAATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
10485412 TTGAAAATCAG
66 TTGAAAA-CAG
10485423 AAAT
1 AAAT
10485427 AAAAACATCA
Statistics
Matches: 138, Mismatches: 8, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
73 35 0.25
74 7 0.05
75 61 0.44
77 35 0.25
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (75 bp):
AAATTGAAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGAAAACAG
Found at i:10487988 original size:53 final size:53
Alignment explanation
Indices: 10487900--10488050 Score: 196
Period size: 53 Copynumber: 2.8 Consensus size: 53
10487890 CTTACATGGT
* *
10487900 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
10487955 TCACATTATACCGATGCCATAGCCTAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** * *
10488008 TCACATTGCACCGATGCCATAGCCCAGCTATTGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
10488051 GCACACTTAT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
52 1 0.01
53 78 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:10491858 original size:16 final size:15
Alignment explanation
Indices: 10491837--10491890 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 15
10491827 GATGTGAATA
10491837 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
10491853 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
10491868 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
10491884 AATAAAA
1 -ATAAAA
10491891 AAATGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
15 8 0.23
16 25 0.71
17 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:10491860 original size:24 final size:24
Alignment explanation
Indices: 10491833--10491890 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
10491823 TAATGATGTG
*
10491833 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
10491857 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
10491881 AATAATAAAA
1 AATAATAAAA
10491891 AAATGTACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 6 0.21
24 23 0.79
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:10491867 original size:8 final size:8
Alignment explanation
Indices: 10491833--10491890 Score: 64
Period size: 8 Copynumber: 7.2 Consensus size: 8
10491823 TAATGATGTG
*
10491833 AATAATAA
1 AATATTAA
10491841 AATATATAA
1 AATAT-TAA
10491850 AATA-TAA
1 AATATTAA
10491857 AATATTAA
1 AATATTAA
*
10491865 AATATCAA
1 AATATTAA
*
10491873 AATATTAG
1 AATATTAA
*
10491881 AATAATAA
1 AATATTAA
10491889 AA
1 AA
10491891 AAATGTACAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
7 7 0.17
8 28 0.67
9 7 0.17
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (8 bp):
AATATTAA
Found at i:10492061 original size:22 final size:24
Alignment explanation
Indices: 10491998--10492062 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
10491988 CGTGATAATA
*
10491998 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
10492023 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
10492046 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
10492063 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:10492087 original size:30 final size:29
Alignment explanation
Indices: 10492051--10492118 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
10492041 TATAGTTAAG
*
10492051 ATATATACATAAGATAACATGTAAAAATAT
1 ATATATAAATAAGATAACAT-TAAAAATAT
* * *
10492081 ATATATAAATAATATAATATTAAAGATAT
1 ATATATAAATAAGATAACATTAAAAATAT
*
10492110 ATACATAAA
1 ATATATAAA
10492119 ATAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAAAATAT
Found at i:10492109 original size:25 final size:25
Alignment explanation
Indices: 10492081--10492137 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
10492071 GTAAAAATAT
* *
10492081 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAAAATAATATAAAAG
* * *
10492106 ATATATACATAAAATAGTATAAAAT
1 ATATATAAATAAAATAATATAAAAG
10492131 ATATATA
1 ATATATA
10492138 TATACGTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAAAATAATATAAAAG
Found at i:10492214 original size:23 final size:25
Alignment explanation
Indices: 10492171--10492216 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
10492161 TATACCTGAT
10492171 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
10492196 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
10492217 ACAAAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:10492745 original size:30 final size:30
Alignment explanation
Indices: 10492709--10492823 Score: 176
Period size: 30 Copynumber: 3.8 Consensus size: 30
10492699 TAGGTACAAG
* * *
10492709 TGGTGGTGGAGAAGGTGTGGCTAGAGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
10492739 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
10492769 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
10492799 TGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
10492824 TGAGAAAAGT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 77 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:10492802 original size:60 final size:60
Alignment explanation
Indices: 10492709--10492823 Score: 203
Period size: 60 Copynumber: 1.9 Consensus size: 60
10492699 TAGGTACAAG
*
10492709 TGGTGGTGGAGAAGGTGTGGCTAGAGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGAGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
10492769 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGAGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
10492824 TGAGAAAAGT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGAGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:10503168 original size:66 final size:66
Alignment explanation
Indices: 10503062--10503188 Score: 227
Period size: 66 Copynumber: 1.9 Consensus size: 66
10503052 ACCAATACCC
* * *
10503062 AAATATGAAAATCAGGTGTAAAACTAAAACTATCCCATAATGGGTTATTGAAAATTATGAACATC
1 AAATATGAAAATCAGCTGTAAAACCAAAACTATCCAATAATGGGTTATTGAAAATTATGAACATC
10503127 T
66 T
10503128 AAATATGAAAATCAGCTGTAAAACCAAAACTATCCAATAATGGGTTATTGAAAATTATGAA
1 AAATATGAAAATCAGCTGTAAAACCAAAACTATCCAATAATGGGTTATTGAAAATTATGAA
10503189 TATCCATGTA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (66 bp):
AAATATGAAAATCAGCTGTAAAACCAAAACTATCCAATAATGGGTTATTGAAAATTATGAACATC
T
Found at i:10504794 original size:13 final size:14
Alignment explanation
Indices: 10504776--10504847 Score: 58
Period size: 13 Copynumber: 4.9 Consensus size: 14
10504766 AAGCAACCGT
*
10504776 AAATGGGA-ATGGG
1 AAATGGGAGAGGGG
10504789 AAATGGGAGGAGGGG
1 AAATGGGA-GAGGGG
*
10504804 AATCGATGGAAGAGGGG
1 AA---ATGGGAGAGGGG
*
10504821 AAATGGGA-ATGGG
1 AAATGGGAGAGGGG
10504834 AAATGGGAGGAGGG
1 AAATGGGA-GAGGG
10504848 CACGGTGGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
13 20 0.43
14 5 0.11
15 9 0.19
17 8 0.17
18 5 0.11
ACGTcount: A:0.36, C:0.01, G:0.51, T:0.11
Consensus pattern (14 bp):
AAATGGGAGAGGGG
Found at i:10504840 original size:45 final size:43
Alignment explanation
Indices: 10504776--10504865 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 43
10504766 AAGCAACCGT
10504776 AAATGGGAATGGGAAATGGGAGGAGGGGAATCGATGGAAGAGGGG
1 AAATGGGAATGGGAAATGGGAGGA-GGGAA-CGATGGAAGAGGGG
* *
10504821 AAATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAGGGG
1 AAATGGGAATGGGAAATGGGAGGAGGGAACGATGGAAGAGGGG
10504864 AA
1 AA
10504866 TCGATGGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 15 0.35
44 4 0.09
45 24 0.56
ACGTcount: A:0.36, C:0.03, G:0.51, T:0.10
Consensus pattern (43 bp):
AAATGGGAATGGGAAATGGGAGGAGGGAACGATGGAAGAGGGG
Found at i:10504946 original size:30 final size:30
Alignment explanation
Indices: 10504911--10505124 Score: 353
Period size: 30 Copynumber: 7.2 Consensus size: 30
10504901 CATTGTATTT
10504911 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
* *
10504941 ATGTATTTTAAAAATAAAGAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
10504971 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
10505001 GTGTATTTTAAAAAT-AAAAAATATATTTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
10505030 GTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
10505059 CTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
10505088 GTTTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAAATATATGTA
*
10505118 CTGTATT
1 GTGTATT
10505125 CGGTTTATTC
Statistics
Matches: 172, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
29 82 0.48
30 90 0.52
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.39
Consensus pattern (30 bp):
GTGTATTTTAAAAATAAAAAAATATATGTA
Found at i:10505023 original size:29 final size:29
Alignment explanation
Indices: 10504911--10505124 Score: 347
Period size: 29 Copynumber: 7.2 Consensus size: 29
10504901 CATTGTATTT
10504911 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
*
10504941 ATGTATTTTAAAAATAAAGAAATATATGTA
1 GTGTATTTTAAAAATAAA-AAATATATGTA
10504971 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
*
10505001 GTGTATTTTAAAAATAAAAAATATATTTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
10505030 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
*
10505059 CTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
*
10505088 GTTTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
*
10505118 CTGTATT
1 GTGTATT
10505125 CGGTTTATTC
Statistics
Matches: 172, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
29 85 0.49
30 84 0.49
31 3 0.02
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.39
Consensus pattern (29 bp):
GTGTATTTTAAAAATAAAAAATATATGTA
Found at i:10505965 original size:16 final size:16
Alignment explanation
Indices: 10505930--10505986 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
10505920 TTTAAATAAC
*
10505930 TTCTATTATATATCAA
1 TTCTAATATATATCAA
10505946 TTCTAATATGA-AT-AA
1 TTCTAATAT-ATATCAA
*
10505961 CTTCTATTATATATCAA
1 -TTCTAATATATATCAA
10505978 TTCTAATAT
1 TTCTAATAT
10505987 GATGTCCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
15 3 0.09
16 28 0.82
17 3 0.09
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (16 bp):
TTCTAATATATATCAA
Found at i:10505965 original size:32 final size:32
Alignment explanation
Indices: 10505924--10505988 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
10505914 AAATAATTTA
10505924 AATAACTTCTATTATATATCAATTCTAATATG
1 AATAACTTCTATTATATATCAATTCTAATATG
10505956 AATAACTTCTATTATATATCAATTCTAATATG
1 AATAACTTCTATTATATATCAATTCTAATATG
10505988 A
1 A
10505989 TGTCCTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.43
Consensus pattern (32 bp):
AATAACTTCTATTATATATCAATTCTAATATG
Found at i:10534003 original size:4 final size:4
Alignment explanation
Indices: 10533986--10534023 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
10533976 CGGGATCAAC
* *
10533986 ATGT ACGT ACGT ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
10534024 ATACATGAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (4 bp):
ATGT
Found at i:10555419 original size:3 final size:3
Alignment explanation
Indices: 10555411--10555440 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10555401 GCAGGATAAA
10555411 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
10555441 CTGAGACAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:10557184 original size:21 final size:20
Alignment explanation
Indices: 10557146--10557184 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
10557136 TGAATGTGTT
*
10557146 CTTTTTTTTAAATCTAAATG
1 CTTTTTTTTAAATATAAATG
*
10557166 CTTTTCTTTTATATATAAA
1 CTTTT-TTTTAAATATAAA
10557185 ATGACTATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.31, C:0.10, G:0.03, T:0.56
Consensus pattern (20 bp):
CTTTTTTTTAAATATAAATG
Found at i:10559157 original size:26 final size:26
Alignment explanation
Indices: 10559119--10559170 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10559109 CTACACAAAC
*
10559119 AAGTAAGATTAATATGAAAGGAAAGG
1 AAGTAAGACTAATATGAAAGGAAAGG
*
10559145 AAGTAATACTAATATGAAAGGAAAGG
1 AAGTAAGACTAATATGAAAGGAAAGG
10559171 CATACTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.54, C:0.02, G:0.25, T:0.19
Consensus pattern (26 bp):
AAGTAAGACTAATATGAAAGGAAAGG
Found at i:10563175 original size:65 final size:65
Alignment explanation
Indices: 10563094--10563226 Score: 266
Period size: 65 Copynumber: 2.0 Consensus size: 65
10563084 AATATGCTGT
10563094 ACATACAACAATCTTTGAACAGATGTAATTAACACGTTAATGTTATATATGCTTAGTCTACTGAC
1 ACATACAACAATCTTTGAACAGATGTAATTAACACGTTAATGTTATATATGCTTAGTCTACTGAC
10563159 ACATACAACAATCTTTGAACAGATGTAATTAACACGTTAATGTTATATATGCTTAGTCTACTGAC
1 ACATACAACAATCTTTGAACAGATGTAATTAACACGTTAATGTTATATATGCTTAGTCTACTGAC
10563224 ACA
1 ACA
10563227 CTTTTATTGT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 68 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (65 bp):
ACATACAACAATCTTTGAACAGATGTAATTAACACGTTAATGTTATATATGCTTAGTCTACTGAC
Found at i:10563813 original size:78 final size:78
Alignment explanation
Indices: 10563731--10563940 Score: 267
Period size: 81 Copynumber: 2.7 Consensus size: 78
10563721 TGCCTTCTCG
** *
10563731 GGAGATGCATGTAATGAGGTTGATGATGGCACCATTGGAGGAGGATGCATTTTCTGTTTTGATGG
1 GGAGATGCATGTAATGAGGTTGATGATGGCATTATTGGAGGAGGATGCATTCTCTGTTTTGATGG
* **
10563796 AACTGCTGGTGTA
66 AACCGCTGGCATA
* * *
10563809 GGAGATGCATGGAATGAGGTTGGTGATGGCATTATTGGAGGAGGATGCACTGAACTCTGTTTTGA
1 GGAGATGCATGTAATGAGGTTGATGATGGCATTATTGGAGGAGGATGCA-T--TCTCTGTTTTGA
*
10563874 TGGAACCGCTGGCATG
63 TGGAACCGCTGGCATA
* * * *
10563890 GGAAATGCATGTAATGAGGTCGATGATGGCATTGTTAGAGGAGGATGCATT
1 GGAGATGCATGTAATGAGGTTGATGATGGCATTATTGGAGGAGGATGCATT
10563941 GAGATCTCTG
Statistics
Matches: 112, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
78 45 0.40
79 1 0.01
80 1 0.01
81 65 0.58
ACGTcount: A:0.25, C:0.10, G:0.36, T:0.29
Consensus pattern (78 bp):
GGAGATGCATGTAATGAGGTTGATGATGGCATTATTGGAGGAGGATGCATTCTCTGTTTTGATGG
AACCGCTGGCATA
Found at i:10566323 original size:231 final size:231
Alignment explanation
Indices: 10565917--10566843 Score: 1631
Period size: 231 Copynumber: 4.0 Consensus size: 231
10565907 AATAAATTTG
* * *
10565917 CTGGGAGGGGAGTTGCATGTGGGGTGGTTGGTGATGGCATTATTGGGGAAGGATGCGCTAAGCTT
1 CTGGGAGGGGAGTTGCATGTGGGGTGGTTGGTGATGGCATTATCGGGGAAGGATGCACTAAGCTC
*
10565982 TGTATGGGTGGACATGCTGGAATAGGCGACAACAACATGGCTCTTGGTGCTGGTAGTGTAGGAGG
66 TGTATGGGTGGACATGCTGGAATAGGCGACAACAGCATGGCTCTTGGTGCTGGTAGTGTAGGAGG
*
10566047 TAAAATTAAATTTGATGAAGGTATCATTATCTTATCGCATGGTTTTGCAGTTTCATCGTTTTGAT
131 TAAAATTAAATTTGATGAAGGTATCATTAACTTATCGCATGGTTTTGCAGTTTCATCGTTTTGAT
*
10566112 CACTTTTGCGGTTAACTTGTTGCTGCTCAATTGTTT
196 CACTTTTGCGGTTTACTTGTTGCTGCTCAATTGTTT
* *
10566148 CTAGGAGGGGAGTTGCATGTGGGGTGGTTGGTGATGGCATTATCGGGGAAGGATGCAATAAGCTC
1 CTGGGAGGGGAGTTGCATGTGGGGTGGTTGGTGATGGCATTATCGGGGAAGGATGCACTAAGCTC
*
10566213 TGTATGGGTGGACATGCTGGAATAGGCGACAACATCATGGCT-TCTGGTGCTGGTAGTGTAGGAG
66 TGTATGGGTGGACATGCTGGAATAGGCGACAACAGCATGGCTCT-TGGTGCTGGTAGTGTAGGAG
10566277 GTAAAATTAAATTTGATGAAGGTATCATTAACTTATCGCATGGTTTTGCAGTTTCATCGTTTTGA
130 GTAAAATTAAATTTGATGAAGGTATCATTAACTTATCGCATGGTTTTGCAGTTTCATCGTTTTGA
*
10566342 TCACTTTTGCGGTTTACTTGTTGCTGCTCAATTATTT
195 TCACTTTTGCGGTTTACTTGTTGCTGCTCAATTGTTT
10566379 CTGGGAGGGGAGTTGCATGTGGGGTGGTTGGTGATGGCATTATCGGGGAAGGATGCACTAAGCTC
1 CTGGGAGGGGAGTTGCATGTGGGGTGGTTGGTGATGGCATTATCGGGGAAGGATGCACTAAGCTC
* *
10566444 TGTATGGGTGGACATGCTGGAATAGGCGACAACAGCATTGCTCTTGGTGCTGGTAGTGTAGGAGA
66 TGTATGGGTGGACATGCTGGAATAGGCGACAACAGCATGGCTCTTGGTGCTGGTAGTGTAGGAGG
* *
10566509 TAAAATTAAATTTAATGAAGGTATCATTATCTTATCGCATGGTTTTGCAGTTTCATCGTTTTGAT
131 TAAAATTAAATTTGATGAAGGTATCATTAACTTATCGCATGGTTTTGCAGTTTCATCGTTTTGAT
*
10566574 CACTTTTGCGGTTTACTTGTTGCTCCTCAATTGTTT
196 CACTTTTGCGGTTTACTTGTTGCTGCTCAATTGTTT
*
10566610 CTGGGAGGGGAGTTGCATGTGGGGTGGTTGGTGATGGCATTATTGGGGAAGGATGCACTAAGCTC
1 CTGGGAGGGGAGTTGCATGTGGGGTGGTTGGTGATGGCATTATCGGGGAAGGATGCACTAAGCTC
10566675 TGTATGGGTGGACATGCTGGAATAGGCGACAACAGCATGGCTCTTGGTGCTGGTAGTGTAGGAGG
66 TGTATGGGTGGACATGCTGGAATAGGCGACAACAGCATGGCTCTTGGTGCTGGTAGTGTAGGAGG
* ** *
10566740 TAAAATTAAATTTGATGAAGGTATCATTGACACATCGCATGGTTCTGCAGTTTCATCGTTTTGAT
131 TAAAATTAAATTTGATGAAGGTATCATTAACTTATCGCATGGTTTTGCAGTTTCATCGTTTTGAT
** *
10566805 CACTTTTATGGTTTACTTGTTGTTGCTCAATTGTTT
196 CACTTTTGCGGTTTACTTGTTGCTGCTCAATTGTTT
10566841 CTG
1 CTG
10566844 CTGCCTTTGG
Statistics
Matches: 663, Mismatches: 31, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
230 1 0.00
231 661 1.00
232 1 0.00
ACGTcount: A:0.22, C:0.13, G:0.31, T:0.34
Consensus pattern (231 bp):
CTGGGAGGGGAGTTGCATGTGGGGTGGTTGGTGATGGCATTATCGGGGAAGGATGCACTAAGCTC
TGTATGGGTGGACATGCTGGAATAGGCGACAACAGCATGGCTCTTGGTGCTGGTAGTGTAGGAGG
TAAAATTAAATTTGATGAAGGTATCATTAACTTATCGCATGGTTTTGCAGTTTCATCGTTTTGAT
CACTTTTGCGGTTTACTTGTTGCTGCTCAATTGTTT
Found at i:10567334 original size:2 final size:2
Alignment explanation
Indices: 10567327--10567351 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10567317 GTAAATTCCT
10567327 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10567352 TACATTTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10568847 original size:19 final size:19
Alignment explanation
Indices: 10568791--10568847 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
10568781 TAATTTCAAA
*
10568791 AAATAAAAAATAGATAAATT
1 AAATAAAAAAT-TATAAATT
* * *
10568811 AAATTAAAATTTAAAAATT
1 AAATAAAAAATTATAAATT
**
10568830 CTATAAAAAATTATAAAT
1 AAATAAAAAATTATAAAT
10568848 AAGTAAACCA
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
19 19 0.68
20 9 0.32
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
AAATAAAAAATTATAAATT
Found at i:10574675 original size:22 final size:21
Alignment explanation
Indices: 10574650--10574693 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
10574640 AAAATATTCT
* *
10574650 TATAAAATTATTTTTTTAAAAA
1 TATAAAATT-TTATTTAAAAAA
*
10574672 TATATAATTTTATTTAAAAAA
1 TATAAAATTTTATTTAAAAAA
10574693 T
1 T
10574694 TACTTAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TATAAAATTTTATTTAAAAAA
Found at i:10574924 original size:19 final size:19
Alignment explanation
Indices: 10574900--10574940 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
10574890 ATAATGTTTT
10574900 AAAAAATAAAAATTTTAAA
1 AAAAAATAAAAATTTTAAA
10574919 AAAAAATAAAAATTTTAAA
1 AAAAAATAAAAATTTTAAA
10574938 AAA
1 AAA
10574941 CTAATCTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAAATAAAAATTTTAAA
Found at i:10576173 original size:34 final size:34
Alignment explanation
Indices: 10576131--10576202 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
10576121 TCACAATATT
10576131 CAACAACATCGATATTGAACCGAAATTAGTAATA
1 CAACAACATCGATATTGAACCGAAATTAGTAATA
10576165 CAACAACATCGATATTGAACCGAAATTAGTAATA
1 CAACAACATCGATATTGAACCGAAATTAGTAATA
10576199 CAAC
1 CAAC
10576203 TTGTCCAAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.47, C:0.19, G:0.11, T:0.22
Consensus pattern (34 bp):
CAACAACATCGATATTGAACCGAAATTAGTAATA
Found at i:10582950 original size:20 final size:19
Alignment explanation
Indices: 10582907--10582952 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
10582897 ATAGTGGTGG
10582907 ATTTTTTATTTTTATGTAA
1 ATTTTTTATTTTTATGTAA
10582926 ATTTTATTATTTATTAT-T-A
1 ATTTT-TTATTT-TTATGTAA
10582945 ATTTTTTA
1 ATTTTTTA
10582953 AATAGACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 3 0.12
19 11 0.44
20 7 0.28
21 4 0.16
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (19 bp):
ATTTTTTATTTTTATGTAA
Found at i:10589712 original size:24 final size:24
Alignment explanation
Indices: 10589680--10589736 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
10589670 GCATTAAATA
10589680 ATATCTAGTCTTGGCCAATATCCT
1 ATATCTAGTCTTGGCCAATATCCT
10589704 ATATCTAGTCTTGGCCAATATCCT
1 ATATCTAGTCTTGGCCAATATCCT
*
10589728 ATGTCTAGT
1 ATATCTAGT
10589737 GTATTGAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (24 bp):
ATATCTAGTCTTGGCCAATATCCT
Found at i:10599071 original size:20 final size:20
Alignment explanation
Indices: 10599038--10599075 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10599028 CACTTGTCAC
* *
10599038 AAAAAGAAATTATAATTTCA
1 AAAAACAAAGTATAATTTCA
10599058 AAAAACAAAGTATAATTT
1 AAAAACAAAGTATAATTT
10599076 AGATAGATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (20 bp):
AAAAACAAAGTATAATTTCA
Found at i:10603901 original size:50 final size:50
Alignment explanation
Indices: 10603843--10603947 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
10603833 TTTTAATGTG
10603843 AGTA-TGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
10603892 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
1 AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
10603942 AGTATT
1 AGTATT
10603948 AGTCCTGTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 4 0.07
50 51 0.93
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (50 bp):
AGTATTGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
Found at i:10609402 original size:21 final size:21
Alignment explanation
Indices: 10609368--10609408 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10609358 AATTAACTAA
*
10609368 TTTTAGATTATTTATTTTAAT
1 TTTTAGATTATTTAATTTAAT
10609389 TTTTA-ATTATTTTAATTTAA
1 TTTTAGATTA-TTTAATTTAA
10609409 AAATGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTTAGATTATTTAATTTAAT
Found at i:10618387 original size:14 final size:15
Alignment explanation
Indices: 10618358--10618393 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
10618348 TAGGCTGTGT
*
10618358 TTATTTTACTGAAAA
1 TTATTTTACAGAAAA
10618373 TTATTTTA-AGAAAA
1 TTATTTTACAGAAAA
10618387 TTATTTT
1 TTATTTT
10618394 TAAAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.53
Consensus pattern (15 bp):
TTATTTTACAGAAAA
Found at i:10624129 original size:53 final size:53
Alignment explanation
Indices: 10624044--10624161 Score: 166
Period size: 53 Copynumber: 2.2 Consensus size: 53
10624034 AAAATATGTG
*
10624044 ATAAGTGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGT
1 ATAA-TGTGATAATGTGACTCCGTATAAGACCAT-GTCTGGGATATGGCATCGGT
* *
10624098 ATAATGTGATAATGTGATTCCGTATAAGACCATGTCTGGGATATGGCTTCGGT
1 ATAATGTGATAATGTGACTCCGTATAAGACCATGTCTGGGATATGGCATCGGT
10624151 ATGATATGTGA
1 AT-A-ATGTGA
10624162 ACCGTGTAAG
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
52 1 0.02
53 46 0.79
54 5 0.09
55 6 0.10
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (53 bp):
ATAATGTGATAATGTGACTCCGTATAAGACCATGTCTGGGATATGGCATCGGT
Found at i:10629864 original size:53 final size:53
Alignment explanation
Indices: 10629708--10629873 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
10629698 GACGAAAAAT
* **
10629708 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
10629760 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
10629813 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
10629867 TATGTGA
1 -ATGTGA
10629874 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:10652789 original size:17 final size:18
Alignment explanation
Indices: 10652767--10652800 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10652757 TTTTTATTTA
10652767 TTTTTTA-AAAATGTTTT
1 TTTTTTAGAAAATGTTTT
*
10652784 TTTTTTAGTAAATGTTT
1 TTTTTTAGAAAATGTTT
10652801 GGAATTATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (18 bp):
TTTTTTAGAAAATGTTTT
Found at i:10659231 original size:24 final size:25
Alignment explanation
Indices: 10659199--10659262 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 25
10659189 CAATGATGAG
*
10659199 AATAATAAAATATATAAAATAT-AA
1 AATATTAAAATATATAAAATATCAA
*
10659223 AATATTAAAATAT-CAAAATATCAA
1 AATATTAAAATATATAAAATATCAA
*
10659247 AATATTAGAATA-ATAA
1 AATATTAAAATATATAA
10659263 TTAATATTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 7 0.21
24 27 0.79
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.30
Consensus pattern (25 bp):
AATATTAAAATATATAAAATATCAA
Found at i:10659233 original size:8 final size:8
Alignment explanation
Indices: 10659199--10659258 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
10659189 CAATGATGAG
*
10659199 AATAATAA
1 AATATTAA
10659207 AATATATAA
1 AATAT-TAA
10659216 AATA-TAA
1 AATATTAA
10659223 AATATTAA
1 AATATTAA
*
10659231 AATATCAA
1 AATATTAA
*
10659239 AATATCAA
1 AATATTAA
*
10659247 AATATTAG
1 AATATTAA
10659255 AATA
1 AATA
10659259 ATAATTAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
7 7 0.15
8 32 0.70
9 7 0.15
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (8 bp):
AATATTAA
Found at i:10659433 original size:23 final size:24
Alignment explanation
Indices: 10659386--10659453 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 24
10659376 TACATATATA
* *
10659386 AAAAATAAATACATGATA-A-TATT
1 AAAAAT-AATACATAATATAGTGTT
*
10659409 AAAAAT-GTACATAATATAGTGTT
1 AAAAATAATACATAATATAGTGTT
10659432 AAAAATACATACATAATATAGT
1 AAAAATA-ATACATAATATAGT
10659454 TAAGATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
21 8 0.22
22 1 0.03
23 15 0.41
25 13 0.35
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATAATACATAATATAGTGTT
Found at i:10659455 original size:23 final size:22
Alignment explanation
Indices: 10659386--10659469 Score: 66
Period size: 23 Copynumber: 3.7 Consensus size: 22
10659376 TACATATATA
*
10659386 AAAAATAAATACATGATAATA-TT
1 AAAAAT-AATACATAAT-ATAGTT
*
10659409 AAAAAT-GTACATAATATAGTGTT
1 AAAAATAATACATAATATA--GTT
10659432 AAAAATACATACATAATATAGTT
1 AAAAATA-ATACATAATATAGTT
*
10659455 -AAGATATATACATAA
1 AAAAATA-ATACATAA
10659470 GATAACATGT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
20 3 0.06
21 7 0.14
22 13 0.25
23 17 0.33
25 11 0.22
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (22 bp):
AAAAATAATACATAATATAGTT
Found at i:10659468 original size:22 final size:24
Alignment explanation
Indices: 10659416--10659469 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
10659406 ATTAAAAATG
10659416 TACATAATATAGTGTTAAAAATACA
1 TACATAATATAG-GTTAAAAATACA
* *
10659441 TACATAATATA-GTT-AAGATATA
1 TACATAATATAGGTTAAAAATACA
10659463 TACATAA
1 TACATAA
10659470 GATAACATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 13 0.48
23 3 0.11
25 11 0.41
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (24 bp):
TACATAATATAGGTTAAAAATACA
Found at i:10659608 original size:24 final size:24
Alignment explanation
Indices: 10659490--10659616 Score: 74
Period size: 24 Copynumber: 5.5 Consensus size: 24
10659480 AGAAAAAAAT
*
10659490 AATATATAAAATATAATATTAAGA
1 AATATATATAATATAATATTAAGA
* * * *
10659514 TATATAAATAAAATAGTA-TAA-A
1 AATATATATAATATAATATTAAGA
* *
10659536 TATATATACGTAATATAA-A-T-ATA
1 AATATATA--TAATATAATATTAAGA
** *
10659559 AA-ATATA-CCTAT-ATATTAAAA
1 AATATATATAATATAATATTAAGA
10659580 TAATATATATAATATAATATTAAGA
1 -AATATATATAATATAATATTAAGA
10659605 AATATA-ATAATA
1 AATATATATAATA
10659617 ACAAAAAAAG
Statistics
Matches: 78, Mismatches: 15, Indels: 21
0.68 0.13 0.18
Matches are distributed among these distances:
18 1 0.01
19 4 0.05
20 1 0.01
21 2 0.03
22 16 0.21
23 18 0.23
24 28 0.36
25 8 0.10
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.35
Consensus pattern (24 bp):
AATATATATAATATAATATTAAGA
Found at i:10660127 original size:30 final size:30
Alignment explanation
Indices: 10660091--10660262 Score: 276
Period size: 30 Copynumber: 5.8 Consensus size: 30
10660081 TAGGTACAAG
* * *
10660091 TGGTGGTGGAGAATGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
10660121 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
10660151 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
10660181 TGGTGGTGGAAAA-GAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
10660210 TGGTGGTGG-AAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
10660239 TGGTGGTGGAAAAGGAGTGGCTAG
1 TGGTGGTGGAAAAGGAGTGGCTAG
10660263 ATTTTTTTAT
Statistics
Matches: 132, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
28 3 0.02
29 48 0.36
30 81 0.61
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:10661008 original size:14 final size:14
Alignment explanation
Indices: 10660981--10661029 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
10660971 GAGTTGATTT
*
10660981 TTGAAAAATA-AAA
1 TTGAAAAACAGAAA
10660994 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
10661008 TTGAAAAAGCAGAAA
1 TTGAAAAA-CAGAAA
10661023 TT-AAAAA
1 TTGAAAAA
10661030 GACCTCAGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 9 0.27
14 16 0.48
15 8 0.24
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:10661144 original size:74 final size:75
Alignment explanation
Indices: 10661008--10661644 Score: 555
Period size: 74 Copynumber: 8.3 Consensus size: 75
10660998 AAAACAGAAA
* * * * *
10661008 TTGAAAAAGCAGAAATTAAAAAGACCTCAGCATGTGCAGCCGAGACTCAACTCACCTCTCGCAAA
1 TTGACAAA-CAGAAATTGAAAATACCTCAGCGTGT-C--CCGAGGCTCAACTCACCTCTCGC-AA
10661073 TATGAGTT-A-ATTT
61 TATGAGTTGATATTT
* * *
10661086 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTTAACTCACCTTTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
10661151 GTTGATTTTT
66 GTTGATATTT
* * * *
10661161 TTGAAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
10661226 AGTTGATTTTTTT
65 AGTTGA--TATTT
* * * ** *
10661239 TTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAAGCTCAACTCACCTCTCGCAATAT
1 TTGACAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
10661304 GAGTT-A-A-TT
64 GAGTTGATATTT
* *
10661313 TTGACAAACAGAAATTGAAATTACCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
10661377 GTT--TGATTT
66 GTTGAT-ATTT
* * *
10661386 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
10661451 AGTTGATTTTT
65 AGTTGATATTT
* * * ** * * ** *
10661462 TTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAG-CATGTGAGC-CAAGGCTCAAC
1 TTGACAAACAGAAATTG-A-AA-A-TACCT---CAG-CGT--GTCCCGAG-GCTCAA--CTC---
10661525 TCACCTCTCGCAATATGAGTT-A-ATTT
50 --ACCTCTCGCAATATGAGTTGATATTT
*
10661551 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
10661616 GTCG--ATTT
66 GTTGATATTT
*
10661624 TTGAAAAACAGAAATTGAAAA
1 TTGACAAACAGAAATTGAAAA
10661645 CCAGAAATTG
Statistics
Matches: 458, Mismatches: 66, Indels: 75
0.76 0.11 0.13
Matches are distributed among these distances:
71 31 0.07
72 4 0.01
73 66 0.14
74 67 0.15
75 48 0.10
76 67 0.15
77 39 0.09
78 27 0.06
79 39 0.09
80 6 0.01
81 2 0.00
82 4 0.01
83 2 0.00
84 7 0.02
85 5 0.01
86 3 0.01
87 2 0.00
88 1 0.00
89 18 0.04
90 1 0.00
91 19 0.04
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (75 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATATTT
Found at i:10661486 original size:14 final size:14
Alignment explanation
Indices: 10661467--10661494 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10661457 TTTTTTTTAC
10661467 GAACAGAAATTGAA
1 GAACAGAAATTGAA
10661481 GAACAGAAATTGAA
1 GAACAGAAATTGAA
10661495 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:10661601 original size:164 final size:161
Alignment explanation
Indices: 10661313--10661795 Score: 634
Period size: 164 Copynumber: 3.0 Consensus size: 161
10661303 TGAGTTAATT
* * * *
10661313 TTGACAAACAGAAATTGAAATTACCTCAGC-GTG-TCCGAGGCTCAACTCACCTCTCGTAATATG
1 TTGA-AAACAGAAATTGAAAATACCTCAGCTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
*
10661376 AGTTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
65 AG-TTAATTTTTGAAAAACAGAAA-TT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
**
10661441 TCGCAATATGAGTTGATTTTTTTTACGAACAGAAA
127 TCGCAATATGAGTTGATTTTTTTTAAAAACAGAAA
*
10661476 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAA-AACAGAAATTGAAAATACCTCAGC-TGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
* * *
10661541 GAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCT
64 GAGTTAATTTTTGAAAAACAGAAATT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* *
10661606 CGCAATATGAGTCGA--TTTTTGAAAAACAGAAA
128 CGCAATATGAGTTGATTTTTTTTAAAAACAGAAA
* *
10661638 TTGAAAACCAGAAATTGAAAATACCTCAGCGTATGCAGCCAAGGCTCAACCTCACCTCTTGCAAT
1 TTGAAAA-CAGAAATTGAAAATACCTCAGC-TGTG-AGCCAAGGCTCAA-CTCACCTCTCGCAAT
* * * ** *
10661703 ATGAGCTAATTTTTGATAAAC-TAAATTAAACCACCTCAGCGTATCCTGAGGCTCAACTCACCTC
62 ATGAGTTAATTTTTGAAAAACAGAAATTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
10661767 TCGCAATATGAGTTGATTTTTTTTGAAAA
127 TCGCAATATGAGTTGATTTTTTTTAAAAA
10661796 TTAGAAATAA
Statistics
Matches: 283, Mismatches: 28, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
161 2 0.01
162 92 0.33
163 44 0.16
164 94 0.33
165 22 0.08
166 29 0.10
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (161 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTTTTGAAAAACAGAAATTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTTAAAAACAGAAA
Found at i:10661610 original size:73 final size:74
Alignment explanation
Indices: 10661476--10661644 Score: 241
Period size: 73 Copynumber: 2.3 Consensus size: 74
10661466 CGAACAGAAA
* *
10661476 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCA-GTGACCCAAGGCTCAACTCACCTCTCGCAATAT
*
10661541 GAGTTAATTT
65 GAGTCAATTT
* ** * *
10661551 TTGACAAACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCAAGGCTCAACTCACCTCTCGCAATATG
*
10661615 AGTCGATTT
66 AGTCAATTT
10661624 TTGAAAAACAGAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
10661645 CCAGAAATTG
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
73 57 0.69
75 26 0.31
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCAAGGCTCAACTCACCTCTCGCAATATG
AGTCAATTT
Found at i:10661643 original size:14 final size:14
Alignment explanation
Indices: 10661624--10661658 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
10661614 GAGTCGATTT
10661624 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
10661638 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
10661652 TTGAAAA
1 TTGAAAA
10661659 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:10661715 original size:91 final size:87
Alignment explanation
Indices: 10661551--10661723 Score: 224
Period size: 91 Copynumber: 1.9 Consensus size: 87
10661541 GAGTTAATTT
* * *
10661551 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTATCCCAAGGCTCAACTCACCTCTCGCAATATGA
*
10661616 GTCGATTTTTGAAAAACAGAAA
66 GTCAATTTTTGAAAAACAGAAA
*
10661638 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTATGCAGCCAAGGCTCAACCTCACCTCTTGCAA
1 TTGACAAA-CAGAAATTGAAAATACCTCAGCGTAT-C--CCAAGGCTCAA-CTCACCTCTCGCAA
*
10661702 TATGAG-CTAATTTTTGATAAAC
61 TATGAGTC-AATTTTTGAAAAAC
10661724 TAAATTAAAC
Statistics
Matches: 74, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
86 3 0.04
87 28 0.38
88 1 0.01
90 11 0.15
91 31 0.42
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (87 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTATCCCAAGGCTCAACTCACCTCTCGCAATATGA
GTCAATTTTTGAAAAACAGAAA
Found at i:10661743 original size:162 final size:160
Alignment explanation
Indices: 10661313--10661787 Score: 625
Period size: 162 Copynumber: 2.9 Consensus size: 160
10661303 TGAGTTAATT
* * * *
10661313 TTGACAAACAGAAATTGAAATTACCTCAGCG-TG-TCCGAGGCTCAACTCACCTCTCGTAATATG
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
*
10661376 AGTTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
65 AG-TTAATTTTTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* **
10661441 TCGCAATATGAGTTGATTTTTTTTACGAACAGAAA
128 TCGCAATATGAGTTGA--TTTTTGAAAAACAGAAA
* *
10661476 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAA-AACAGAAATTGAAAATACCTCAGCGT-TGAGCCAAGGCTCAACTCACCTCTCGCAATAT
* * * *
10661541 GAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCT
64 GAGTTAATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
10661606 CGCAATATGAGTCGATTTTTGAAAAACAGAAA
129 CGCAATATGAGTTGATTTTTGAAAAACAGAAA
*
10661638 TTGAAAACCAGAAATTGAAAATACCTCAGCGTATGCAGCCAAGGCTCAACCTCACCTCTTGCAAT
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGT-TG-AGCCAAGGCTCAA-CTCACCTCTCGCAAT
* * * ** *
10661703 ATGAGCTAATTTTTGATAAAC-TAAATT-AAACCACCTCAGCGTATCCTGAGGCTCAACTCACCT
62 ATGAGTTAATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
10661766 CTCGCAATATGAGTTGATTTTT
127 CTCGCAATATGAGTTGATTTTT
10661788 TTTGAAAATT
Statistics
Matches: 278, Mismatches: 27, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
161 2 0.01
162 97 0.35
163 44 0.16
164 85 0.31
165 21 0.08
166 29 0.10
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (160 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTTGAGCCAAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAAACAGAAA
Found at i:10684827 original size:30 final size:30
Alignment explanation
Indices: 10684791--10684854 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
10684781 CAGTGTATGA
10684791 AGGTGTTGTTTTAATGGAAAATAATGCTGC
1 AGGTGTTGTTTTAATGGAAAATAATGCTGC
10684821 AGGTGTTGTTTTAATGGAAAATAATGCTGC
1 AGGTGTTGTTTTAATGGAAAATAATGCTGC
10684851 AGGT
1 AGGT
10684855 ATTAGCACGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.30, C:0.06, G:0.28, T:0.36
Consensus pattern (30 bp):
AGGTGTTGTTTTAATGGAAAATAATGCTGC
Found at i:10692759 original size:16 final size:16
Alignment explanation
Indices: 10692738--10692772 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10692728 ACCTATAAGG
* *
10692738 TATTAAAATAAATAAA
1 TATTAAAAAAAACAAA
10692754 TATTAAAAAAAACAAA
1 TATTAAAAAAAACAAA
10692770 TAT
1 TAT
10692773 CAATTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (16 bp):
TATTAAAAAAAACAAA
Found at i:10694531 original size:30 final size:30
Alignment explanation
Indices: 10694495--10694557 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
10694485 ACTTATTTTA
10694495 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
10694525 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
10694555 TTG
1 TTG
10694558 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:10694678 original size:17 final size:19
Alignment explanation
Indices: 10694638--10694678 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
10694628 GGGAAATATT
*
10694638 TATTTTGATGTTTTTAGTA
1 TATTTTGATGTTATTAGTA
10694657 T-TTTTGAT-TTATTA-TA
1 TATTTTGATGTTATTAGTA
10694673 TATTTT
1 TATTTT
10694679 TAAAATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 3 0.15
17 9 0.45
18 7 0.35
19 1 0.05
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.68
Consensus pattern (19 bp):
TATTTTGATGTTATTAGTA
Found at i:10696172 original size:273 final size:273
Alignment explanation
Indices: 10695720--10696269 Score: 1082
Period size: 273 Copynumber: 2.0 Consensus size: 273
10695710 AACTAAAGAA
10695720 AATTGATGAATTAGGACCAAATTGAATAAATGAAAAAAGTATGAAGGGTTAAATCATAATTTTAT
1 AATTGATGAATTAGGACCAAATTGAATAAATGAAAAAAGTATGAAGGGTTAAATCATAATTTTAT
10695785 CAAAATAAGTGATGAGTCAATGAAAGAATTTGAAGAATCATAAGGGGCAAAATGGTCATTTAGCA
66 CAAAATAAGTGATGAGTCAATGAAAGAATTTGAAGAATCATAAGGGGCAAAATGGTCATTTAGCA
10695850 AGAAAGATAATTTTGAAGGGTAATGATGATGTTGATGATATTTTAGATTAATCAAATAAATATTA
131 AGAAAGATAATTTTGAAGGGTAATGATGATGTTGATGATATTTTAGATTAATCAAATAAATATTA
10695915 GTTTATTAATATTTTGATTTAATTTTTAATTATATTTTATTATTATTTTATTTAGTATATAAGGA
196 GTTTATTAATATTTTGATTTAATTTTTAATTATATTTTATTATTATTTTATTTAGTATATAAGGA
10695980 AAGAAATATGAAG
261 AAGAAATATGAAG
10695993 AATTGATGAATTAGGACCAAATTGAATAAATGAAAAAAGTATGAAGGGTTAAATCATAATTTTAT
1 AATTGATGAATTAGGACCAAATTGAATAAATGAAAAAAGTATGAAGGGTTAAATCATAATTTTAT
* *
10696058 CAAAATAAGTGATGAGTCAATGAAGGAATTTGAAGAATCATAAGGGGCAAAATGGTTATTTAGCA
66 CAAAATAAGTGATGAGTCAATGAAAGAATTTGAAGAATCATAAGGGGCAAAATGGTCATTTAGCA
10696123 AGAAAGATAATTTTGAAGGGTAATGATGATGTTGATGATATTTTAGATTAATCAAATAAATATTA
131 AGAAAGATAATTTTGAAGGGTAATGATGATGTTGATGATATTTTAGATTAATCAAATAAATATTA
10696188 GTTTATTAATATTTTGATTTAATTTTTAATTATATTTTATTATTATTTTATTTAGTATATAAGGA
196 GTTTATTAATATTTTGATTTAATTTTTAATTATATTTTATTATTATTTTATTTAGTATATAAGGA
10696253 AAGAAATATGAAG
261 AAGAAATATGAAG
10696266 AATT
1 AATT
10696270 CTCTTCATCT
Statistics
Matches: 275, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
273 275 1.00
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.37
Consensus pattern (273 bp):
AATTGATGAATTAGGACCAAATTGAATAAATGAAAAAAGTATGAAGGGTTAAATCATAATTTTAT
CAAAATAAGTGATGAGTCAATGAAAGAATTTGAAGAATCATAAGGGGCAAAATGGTCATTTAGCA
AGAAAGATAATTTTGAAGGGTAATGATGATGTTGATGATATTTTAGATTAATCAAATAAATATTA
GTTTATTAATATTTTGATTTAATTTTTAATTATATTTTATTATTATTTTATTTAGTATATAAGGA
AAGAAATATGAAG
Found at i:10697699 original size:23 final size:22
Alignment explanation
Indices: 10697655--10697699 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
10697645 GTTAAATTGA
***
10697655 ATTGTATGTATATGATTGTATT
1 ATTGTATGTATATGAAAATATT
10697677 ATTGTCATGTATATGAAAATATT
1 ATTGT-ATGTATATGAAAATATT
10697700 CACATATCCG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
ATTGTATGTATATGAAAATATT
Found at i:10697980 original size:26 final size:25
Alignment explanation
Indices: 10697950--10698104 Score: 131
Period size: 24 Copynumber: 6.3 Consensus size: 25
10697940 ACAGTTCTTA
*
10697950 TGAGCATCCCGTTATATGGCTCTTCG
1 TGAGCTTCCCGTTA-ATGGCTCTTCG
* * *
10697976 TGAGCGTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCG-TTAATGGCTCTTCG
* *
10698002 TGAGCTTCCCGTTAATGGCTATCCG
1 TGAGCTTCCCGTTAATGGCTCTTCG
*
10698027 -GAACTTCCCGTTAATGGCTCTTCG
1 TGAGCTTCCCGTTAATGGCTCTTCG
* * * * *
10698051 -GAGCTACCCGTTATTGCCTC-CCA
1 TGAGCTTCCCGTTAATGGCTCTTCG
*
10698074 TGAGCTTCCCGATT-ATGGCTCTT-A
1 TGAGCTTCCCG-TTAATGGCTCTTCG
10698098 TGAGCTT
1 TGAGCTT
10698105 TCCATTATAT
Statistics
Matches: 104, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
23 1 0.01
24 59 0.57
25 12 0.12
26 29 0.28
27 3 0.03
ACGTcount: A:0.17, C:0.28, G:0.23, T:0.33
Consensus pattern (25 bp):
TGAGCTTCCCGTTAATGGCTCTTCG
Found at i:10698152 original size:24 final size:24
Alignment explanation
Indices: 10698002--10698155 Score: 80
Period size: 24 Copynumber: 6.4 Consensus size: 24
10697992 AGGCTCTTTG
* *
10698002 TGAGCTTCCCGTTAATGGCT-ATCC
1 TGAGCTTCCCATTAATGGCTCA-CA
* * * *
10698026 GGAACTTCCCGTTAATGGCTCTTC-
1 TGAGCTTCCCATTAATGGCTC-ACA
* * * * * *
10698050 GGAGCTACCCGTTATTGCCTCCCA
1 TGAGCTTCCCATTAATGGCTCACA
**
10698074 TGAGCTTCCCGATT-ATGGCTCTTA
1 TGAGCTTCCC-ATTAATGGCTCACA
* * * *
10698098 TGAGCTTTCCATTATATAGCCCAGA
1 TGAGCTTCCCATTA-ATGGCTCACA
*
10698123 TAAGCTTCCCATTAATGGCTCACA
1 TGAGCTTCCCATTAATGGCTCACA
10698147 TGAGCTTCC
1 TGAGCTTCC
10698156 TGTTATATGG
Statistics
Matches: 98, Mismatches: 26, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
23 4 0.04
24 73 0.74
25 21 0.21
ACGTcount: A:0.20, C:0.29, G:0.19, T:0.32
Consensus pattern (24 bp):
TGAGCTTCCCATTAATGGCTCACA
Found at i:10698168 original size:25 final size:25
Alignment explanation
Indices: 10698072--10698168 Score: 83
Period size: 24 Copynumber: 4.0 Consensus size: 25
10698062 TATTGCCTCC
*
10698072 CATGAGCTTCCCGA-T-TATGGCTCT
1 CATGAGCTTCCC-ATTATATGGCTCA
* * * *
10698096 TATGAGCTTTCCATTATATAGCCCA
1 CATGAGCTTCCCATTATATGGCTCA
* *
10698121 GATAAGCTTCCCATTA-ATGGCTCA
1 CATGAGCTTCCCATTATATGGCTCA
**
10698145 CATGAGCTTCCTGTTATATGGCTC
1 CATGAGCTTCCCATTATATGGCTC
10698169 GAGAGAGGGC
Statistics
Matches: 56, Mismatches: 14, Indels: 5
0.75 0.19 0.07
Matches are distributed among these distances:
23 1 0.02
24 29 0.52
25 26 0.46
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (25 bp):
CATGAGCTTCCCATTATATGGCTCA
Found at i:10705070 original size:16 final size:16
Alignment explanation
Indices: 10705049--10705080 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10705039 ATAAATATTT
10705049 TTATAAATATTTATGG
1 TTATAAATATTTATGG
10705065 TTATAAATATTTATGG
1 TTATAAATATTTATGG
10705081 AGTGTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (16 bp):
TTATAAATATTTATGG
Found at i:10707282 original size:67 final size:67
Alignment explanation
Indices: 10707169--10707303 Score: 225
Period size: 67 Copynumber: 2.0 Consensus size: 67
10707159 AAATATTAGG
10707169 TAAGCATAATTCTTGTTACATGAGCGTACTAAGCACAAAGTGCTTACCCTATTTCCTTTTCCCAT
1 TAAGCATAATTCTTGTTACATGAGCGTACTAAGCACAAAGTGCTTACCCTATTTCCTTTTCCCAT
10707234 GT
66 GT
* * * * *
10707236 TAAGTATAATTCTTGTTATATGAGCTTACTAAGCATAAAGTGCTTACCCTATTTCCTTTTCCCTT
1 TAAGCATAATTCTTGTTACATGAGCGTACTAAGCACAAAGTGCTTACCCTATTTCCTTTTCCCAT
10707301 GT
66 GT
10707303 T
1 T
10707304 TTGTAGTGTT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (67 bp):
TAAGCATAATTCTTGTTACATGAGCGTACTAAGCACAAAGTGCTTACCCTATTTCCTTTTCCCAT
GT
Found at i:10724420 original size:3 final size:3
Alignment explanation
Indices: 10724412--10724436 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10724402 AATTGCACTT
10724412 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
10724437 ATCATTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:10724716 original size:24 final size:25
Alignment explanation
Indices: 10724687--10724735 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
10724677 TTTTTTGTTT
*
10724687 AAATTTAATATTAAT-TATATTTAA
1 AAATTTAATATAAATATATATTTAA
*
10724711 AAATTTGATATAAATATATATTTAA
1 AAATTTAATATAAATATATATTTAA
10724736 GTATATTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (25 bp):
AAATTTAATATAAATATATATTTAA
Found at i:10725511 original size:20 final size:20
Alignment explanation
Indices: 10725486--10725535 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
10725476 TGGCTTAAAA
10725486 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
10725506 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
10725523 GTGGTAGTGGATT
1 TTGGTAGTGGATT
10725536 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:10729989 original size:20 final size:20
Alignment explanation
Indices: 10729964--10730013 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
10729954 TGGCTTAAAA
10729964 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
10729984 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
10730001 GTGGTAGTGGATT
1 TTGGTAGTGGATT
10730014 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:10731783 original size:17 final size:17
Alignment explanation
Indices: 10731761--10731794 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10731751 ATCCACTAAT
*
10731761 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
10731778 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
10731795 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:10736422 original size:17 final size:17
Alignment explanation
Indices: 10736400--10736433 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10736390 ATCCACTAAT
*
10736400 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
10736417 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
10736434 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:10745977 original size:18 final size:18
Alignment explanation
Indices: 10745954--10746019 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
10745944 GTGATTATAT
10745954 ATATTTTGGTCTAATGTA
1 ATATTTTGGTCTAATGTA
* * *
10745972 ATATTTTTAATGTCGTGATTATA
1 ATA-TTTT--GGTC-T-AATGTA
10745995 TATATTTTGGTCTAATGTA
1 -ATATTTTGGTCTAATGTA
10746014 ATATTT
1 ATATTT
10746020 ATATTTGACA
Statistics
Matches: 36, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
18 9 0.25
19 8 0.22
20 1 0.03
21 6 0.17
22 1 0.03
23 8 0.22
24 3 0.08
ACGTcount: A:0.29, C:0.05, G:0.14, T:0.53
Consensus pattern (18 bp):
ATATTTTGGTCTAATGTA
Found at i:10745989 original size:42 final size:42
Alignment explanation
Indices: 10745933--10746019 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
10745923 AATTTGATAT
10745933 TTTTTAATGCCGTGATTATATATATTTTGGTCTAATGTAATA
1 TTTTTAATGCCGTGATTATATATATTTTGGTCTAATGTAATA
*
10745975 TTTTTAATGTCGTGATTATATATATTTTGGTCTAATGTAATA
1 TTTTTAATGCCGTGATTATATATATTTTGGTCTAATGTAATA
10746017 TTT
1 TTT
10746020 ATATTTGACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.53
Consensus pattern (42 bp):
TTTTTAATGCCGTGATTATATATATTTTGGTCTAATGTAATA
Found at i:10749577 original size:13 final size:14
Alignment explanation
Indices: 10749556--10749584 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
10749546 TGAAAAATGG
10749556 ATTAGAAAATATTT
1 ATTAGAAAATATTT
10749570 ATTA-AAAATATTT
1 ATTAGAAAATATTT
10749583 AT
1 AT
10749585 GAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:10750380 original size:19 final size:19
Alignment explanation
Indices: 10750358--10750398 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
10750348 AAAAGCAGGG
10750358 GAAAG-AAAGAAAGAAAGGA
1 GAAAGAAAAGAAA-AAAGGA
*
10750377 GAAAGAAAAGAAAAAGGGA
1 GAAAGAAAAGAAAAAAGGA
10750396 GAA
1 GAA
10750399 CTAGGATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (19 bp):
GAAAGAAAAGAAAAAAGGA
Found at i:10751119 original size:15 final size:15
Alignment explanation
Indices: 10751078--10751124 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
10751068 GAATTTATCA
*
10751078 AATTTATATTGGTTG
1 AATTTATATTGATTG
* * *
10751093 AAATCATTTTGATTG
1 AATTTATATTGATTG
10751108 AATTTATATTGATTG
1 AATTTATATTGATTG
10751123 AA
1 AA
10751125 ATATATAATA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (15 bp):
AATTTATATTGATTG
Found at i:10751499 original size:30 final size:27
Alignment explanation
Indices: 10751436--10751504 Score: 84
Period size: 27 Copynumber: 2.4 Consensus size: 27
10751426 ATGCATTATT
* *
10751436 GGTGTGTTTGGGAGGATATGATATACT
1 GGTGTGTTTGGGAGGATATAATATACG
*
10751463 GGTGTGTTTGGGAGGATTTATAATATTCCG
1 GGTGTGTTTGGGAGGA--TATAATA-TACG
10751493 GGTGTGTTTGGG
1 GGTGTGTTTGGG
10751505 TTGGATATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 16 0.44
29 6 0.17
30 14 0.39
ACGTcount: A:0.17, C:0.04, G:0.39, T:0.39
Consensus pattern (27 bp):
GGTGTGTTTGGGAGGATATAATATACG
Found at i:10751653 original size:18 final size:19
Alignment explanation
Indices: 10751632--10751672 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
10751622 AATGAAATGA
10751632 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
10751650 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
10751669 GAAA
1 GAAA
10751673 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:10756880 original size:12 final size:12
Alignment explanation
Indices: 10756863--10756887 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10756853 TTAAAAATAT
10756863 GAAATACATTAG
1 GAAATACATTAG
10756875 GAAATACATTAG
1 GAAATACATTAG
10756887 G
1 G
10756888 TTAATTGATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.20, T:0.24
Consensus pattern (12 bp):
GAAATACATTAG
Found at i:10757778 original size:12 final size:12
Alignment explanation
Indices: 10757761--10757794 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
10757751 TGACCCGCCC
10757761 ATATTAATTTTT
1 ATATTAATTTTT
*
10757773 ATATTATTTTTT
1 ATATTAATTTTT
10757785 ATA-TAATTTT
1 ATATTAATTTT
10757795 AAAAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:10757954 original size:30 final size:30
Alignment explanation
Indices: 10757918--10757980 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
10757908 ACTTAACAAG
10757918 CAAATGTCTCTAAAATAATAATAAAATTAA
1 CAAATGTCTCTAAAATAATAATAAAATTAA
*
10757948 CAAATGTCTTTAAAATAATAATAAAATTAA
1 CAAATGTCTCTAAAATAATAATAAAATTAA
10757978 CAA
1 CAA
10757981 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.30
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAATAAAATTAA
Found at i:10758028 original size:14 final size:14
Alignment explanation
Indices: 10758011--10758041 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
10758001 ATCTAAACCA
10758011 TAACAACAAAATAG
1 TAACAACAAAATAG
*
10758025 TAACAACATAATAG
1 TAACAACAAAATAG
10758039 TAA
1 TAA
10758042 AATAGTAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (14 bp):
TAACAACAAAATAG
Found at i:10768276 original size:40 final size:40
Alignment explanation
Indices: 10768216--10768330 Score: 144
Period size: 40 Copynumber: 2.9 Consensus size: 40
10768206 TTTTCAGGTC
*
10768216 AAATCCTATCCGCCTTAAGTTACCGTAGTGAATCAAAAAT
1 AAATCCTATCCGTCTTAAGTTACCGTAGTGAATCAAAAAT
* **
10768256 AAATTCTATCCGTCTTAAGTTACCGTAGTGAATCATGAAT
1 AAATCCTATCCGTCTTAAGTTACCGTAGTGAATCAAAAAT
* *
10768296 AAATCCTATTCAC-T-TTAAATTACCATAGTGAATCA
1 AAATCCTA-TC-CGTCTTAAGTTACCGTAGTGAATCA
10768331 GGAACAAATC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
40 62 0.94
41 3 0.05
42 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (40 bp):
AAATCCTATCCGTCTTAAGTTACCGTAGTGAATCAAAAAT
Found at i:10768340 original size:40 final size:40
Alignment explanation
Indices: 10768270--10768352 Score: 121
Period size: 40 Copynumber: 2.1 Consensus size: 40
10768260 TCTATCCGTC
* * * *
10768270 TTAAGTTACCGTAGTGAATCATGAATAAATCCTATTCACT
1 TTAAATTACCATAGTGAATCAGGAACAAATCCTATTCACT
*
10768310 TTAAATTACCATAGTGAATCAGGAACAAATCTTATTCACT
1 TTAAATTACCATAGTGAATCAGGAACAAATCCTATTCACT
10768350 TTA
1 TTA
10768353 TATTCTCAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (40 bp):
TTAAATTACCATAGTGAATCAGGAACAAATCCTATTCACT
Found at i:10770025 original size:10 final size:10
Alignment explanation
Indices: 10770010--10770034 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10770000 ATATTAAATA
10770010 AAATAATAAT
1 AAATAATAAT
10770020 AAATAATAAT
1 AAATAATAAT
10770030 AAATA
1 AAATA
10770035 GTAAAATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AAATAATAAT
Found at i:10775511 original size:28 final size:30
Alignment explanation
Indices: 10775431--10775513 Score: 82
Period size: 30 Copynumber: 2.8 Consensus size: 30
10775421 ATATTGAAAT
* * *
10775431 TTGATTTGATGCAATTATATATATGAAAAT
1 TTGATTTGATTCAATTATATACATGAAAAC
* *
10775461 TTGATTGTAATTCAAATGA-ATACAT-AAAAC
1 TTGATT-TGATTC-AATTATATACATGAAAAC
10775491 TT-ATTTGATTCAATTATATACAT
1 TTGATTTGATTCAATTATATACAT
10775514 TTAAAATATA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
27 4 0.09
28 11 0.26
29 3 0.07
30 12 0.28
31 9 0.21
32 4 0.09
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (30 bp):
TTGATTTGATTCAATTATATACATGAAAAC
Found at i:10784546 original size:22 final size:23
Alignment explanation
Indices: 10784508--10784551 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
10784498 TATGTATTAT
*
10784508 AATAGTTAGAT-ATAAAATAAGG
1 AATAGTTAGATAAAAAAATAAGG
10784530 AATAGTTA-ATACAAAAAATAAG
1 AATAGTTAGATA-AAAAAATAAG
10784552 ACTTCTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 2 0.11
22 8 0.42
23 9 0.47
ACGTcount: A:0.59, C:0.02, G:0.14, T:0.25
Consensus pattern (23 bp):
AATAGTTAGATAAAAAAATAAGG
Found at i:10785282 original size:26 final size:26
Alignment explanation
Indices: 10785237--10785288 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10785227 AATTATCATG
10785237 AATTTAATTTTAATAATTAA-AAAAAT
1 AATTTAATTTTAAT-ATTAACAAAAAT
10785263 AATTTAAATATTTAAT-TTAACAAAAA
1 AATTT-AAT-TTTAATATTAACAAAAA
10785289 GCATATCAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
26 9 0.39
27 8 0.35
28 6 0.26
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (26 bp):
AATTTAATTTTAATATTAACAAAAAT
Found at i:10810426 original size:51 final size:51
Alignment explanation
Indices: 10810311--10810427 Score: 198
Period size: 51 Copynumber: 2.3 Consensus size: 51
10810301 ACACTGATCA
10810311 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTAT
* *
10810362 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTAT
* *
10810413 CATTTGTCGCTTGTC
1 CATTTATCACTTGTC
10810428 GCTTGTCACT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (51 bp):
CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTAT
Done.