Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 281 of 325
Found at i:90033466 original size:25 final size:26
Alignment explanation
Indices: 90033438--90033492 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
90033428 TGAAACAACA
** *
90033438 AAAAAATCTAATTTAAAAA-GAAAAG
1 AAAAAATCTAACCTAAAAACAAAAAG
*
90033463 AAAATATCTAACCTAAAAACAAAAAG
1 AAAAAATCTAACCTAAAAACAAAAAG
90033489 AAAA
1 AAAA
90033493 CAAACCTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.69, C:0.09, G:0.05, T:0.16
Consensus pattern (26 bp):
AAAAAATCTAACCTAAAAACAAAAAG
Found at i:90035137 original size:18 final size:17
Alignment explanation
Indices: 90035116--90035154 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
90035106 TTTAAAGTTA
*
90035116 AAATTAAATGATTATAAT
1 AAATTAAAT-AATATAAT
*
90035134 AAATTACATAATATAAT
1 AAATTAAATAATATAAT
90035151 AAAT
1 AAAT
90035155 GAATTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (17 bp):
AAATTAAATAATATAAT
Found at i:90038789 original size:24 final size:25
Alignment explanation
Indices: 90038757--90038813 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
90038747 GTATCATTAA
* *
90038757 ATATAATTAAAATTAAACGATTA-TT
1 ATAT-ATTAAAAATAAAAGATTATTT
*
90038782 ATATATTAAAAATAAAATATTATTT
1 ATATATTAAAAATAAAAGATTATTT
90038807 ATATATT
1 ATATATT
90038814 TTTTGAGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 15 0.54
25 13 0.46
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (25 bp):
ATATATTAAAAATAAAAGATTATTT
Found at i:90044007 original size:68 final size:66
Alignment explanation
Indices: 90043895--90044159 Score: 219
Period size: 68 Copynumber: 3.9 Consensus size: 66
90043885 TACATCTCGG
* * **
90043895 CTATGTCAACAAATAGAGTCCACTAGGACAATAAACGTGAGGTTATATTGTGTAAGATTATAGCA
1 CTATGTCAACAAATA-AGTCCACTAGGACGATAAACATG-GGTTATATTGTGTAAGACCATAGCA
* *
90043960 TGC
64 CGA
* *
90043963 CTATGTCAACAAATATAGTCCACCAGGACGATAAACATAGGGTTATATTATGTAAGACCATAGCA
1 CTATGTCAACAAATA-AGTCCACTAGGACGATAAACAT-GGGTTATATTGTGTAAGACCATAGCA
90044028 CGA
64 CGA
** * ** ** *
90044031 CTATGGAAACAAATGAAGTTCGTTATAACGATAAACATGGGTTATATTGTGTAAGACCATAGCTC
1 CTATGTCAACAAAT-AAGTCCACTAGGACGATAAACATGGGTTATATTGTGTAAGACCATAGCAC
90044096 -A
65 GA
* * * * * * * * *
90044097 GCTATGACAACATATGGAGTTCACCAGAAC-ATTAAACATGGGGTATGTTGTGTAAGACAATAG
1 -CTATGTCAACAAAT-AAGTCCACTAGGACGA-TAAACATGGGTTATATTGTGTAAGACCATAG
90044160 TTAGGTTAAG
Statistics
Matches: 163, Mismatches: 30, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
66 2 0.01
67 74 0.45
68 85 0.52
69 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (66 bp):
CTATGTCAACAAATAAGTCCACTAGGACGATAAACATGGGTTATATTGTGTAAGACCATAGCACG
A
Found at i:90044102 original size:67 final size:67
Alignment explanation
Indices: 90043925--90044159 Score: 217
Period size: 67 Copynumber: 3.5 Consensus size: 67
90043915 CACTAGGACA
* ** * * * *
90043925 ATAAACGTGAGGTTATATTGTGTAAGATTATAGCATGCCTATGTCAACAAAT-ATAGTCCACCAG
1 ATAAACATG-GGTTATATTGTGTAAGACCATAGCACGACTATGACAACAAATGA-AGTTCACCAG
*
90043989 GACG
64 AACG
* *** *
90043993 ATAAACATAGGGTTATATTATGTAAGACCATAGCACGACTATGGA-AACAAATGAAGTTCGTTAT
1 ATAAACAT-GGGTTATATTGTGTAAGACCATAGCACGACTAT-GACAACAAATGAAGTTCACCAG
90044057 AACG
64 AACG
* * *
90044061 ATAAACATGGGTTATATTGTGTAAGACCATAGCTC-AGCTATGACAACATATGGAGTTCACCAGA
1 ATAAACATGGGTTATATTGTGTAAGACCATAGCACGA-CTATGACAACAAATGAAGTTCACCAGA
90044125 AC-
65 ACG
* * *
90044127 ATTAAACATGGGGTATGTTGTGTAAGACAATAG
1 A-TAAACATGGGTTATATTGTGTAAGACCATAG
90044160 TTAGGTTAAG
Statistics
Matches: 137, Mismatches: 24, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
66 4 0.03
67 73 0.53
68 57 0.42
69 3 0.02
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.27
Consensus pattern (67 bp):
ATAAACATGGGTTATATTGTGTAAGACCATAGCACGACTATGACAACAAATGAAGTTCACCAGAA
CG
Found at i:90045228 original size:41 final size:41
Alignment explanation
Indices: 90045148--90045268 Score: 118
Period size: 42 Copynumber: 2.9 Consensus size: 41
90045138 AGTTAACTCG
* * * * *
90045148 TATGAGTTTTAGTTTAACCTATTGGGTTTCTGTTCAGCT-C
1 TATGAGCTTCAGTTTAACCTTTTGGGTTTCCGTTTAGCTCC
* *
90045188 TCTGAGCTTCAGTTTAATCCTTTTGGGTTTCCATTTAGCTCC
1 TATGAGCTTCAGTTTAA-CCTTTTGGGTTTCCGTTTAGCTCC
* * **
90045230 TATGAGCTTCTGTTCAACCCTTACGGGTTTCCGTTTAGC
1 TATGAGCTTCAGTTTAA-CCTTTTGGGTTTCCGTTTAGC
90045269 ACTTATGTGC
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
40 14 0.22
41 18 0.28
42 33 0.51
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (41 bp):
TATGAGCTTCAGTTTAACCTTTTGGGTTTCCGTTTAGCTCC
Found at i:90052386 original size:22 final size:22
Alignment explanation
Indices: 90052361--90052415 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
90052351 TAATCATCAT
*
90052361 CAAATAGATTCTTTAAAGTTCA
1 CAAATAAATTCTTTAAAGTTCA
* * *
90052383 CAAATAAATTTTTTAAATTTCC
1 CAAATAAATTCTTTAAAGTTCA
90052405 CAAATATAATT
1 CAAATA-AATT
90052416 GTTAGAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 24 0.86
23 4 0.14
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.40
Consensus pattern (22 bp):
CAAATAAATTCTTTAAAGTTCA
Found at i:90057163 original size:5 final size:5
Alignment explanation
Indices: 90057153--90057180 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
90057143 TGTGTGTTTT
90057153 TTTAA TTTAA TTTAA TTTAA TTTAA TTT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTT
90057181 TTCACAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAA
Found at i:90057845 original size:16 final size:15
Alignment explanation
Indices: 90057824--90057853 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
90057814 TTAAGAATTT
90057824 AAATAAAATAATTTTA
1 AAAT-AAATAATTTTA
90057840 AAATAAATAATTTT
1 AAATAAATAATTTT
90057854 GACACTCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AAATAAATAATTTTA
Found at i:90059857 original size:46 final size:46
Alignment explanation
Indices: 90059731--90059942 Score: 157
Period size: 46 Copynumber: 4.6 Consensus size: 46
90059721 GTGCCAATGC
*
90059731 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCG-AGGCCGATG
* * * *
90059776 CATGTCTCAGACATGTCTTACGCTAGCTTA-T-GTCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGC--ACTCATCTCGAGGCCGATG
* * * ** *
90059822 CATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATACTGATG
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGCCGATG
* * * * *
90059868 CCATGTCCCAGACATGGTCTTACATTGGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGAGGCCGATG
* *
90059916 CATGTCCTAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
90059943 TCACACGAGT
Statistics
Matches: 129, Mismatches: 28, Indels: 19
0.73 0.16 0.11
Matches are distributed among these distances:
44 10 0.08
45 16 0.12
46 56 0.43
47 25 0.19
48 21 0.16
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGCCGATG
Found at i:90062945 original size:46 final size:46
Alignment explanation
Indices: 90062850--90062952 Score: 118
Period size: 46 Copynumber: 2.2 Consensus size: 46
90062840 ATGTCGTAGT
* * * * * *
90062850 CGATGCATATCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGC
1 CGATGCATGTACCAAACATGTCTTACACTAGCCTACGTCTCAAGAC
*
90062896 CGATGCATGTACCAAACATGTCTTACACTAGCACT-CGTCTCAATAC
1 CGATGCATGTACCAAACATGTCTTACACTAGC-CTACGTCTCAAGAC
90062942 CGATGCCATGT
1 CGATG-CATGT
90062953 CCTAGACATG
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
46 42 0.88
47 6 0.12
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (46 bp):
CGATGCATGTACCAAACATGTCTTACACTAGCCTACGTCTCAAGAC
Found at i:90069290 original size:24 final size:24
Alignment explanation
Indices: 90069259--90069310 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
90069249 ATTCTATATT
*
90069259 TTCA-TTTTTTTTAGTTTTTGATA
1 TTCATTTTTTTTTAGTTTTTAATA
90069282 TTCATTTTTTTTTAGTTTTTAATA
1 TTCATTTTTTTTTAGTTTTTAATA
90069306 TTCAT
1 TTCAT
90069311 GAAGAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 4 0.15
24 23 0.85
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.69
Consensus pattern (24 bp):
TTCATTTTTTTTTAGTTTTTAATA
Found at i:90085329 original size:37 final size:37
Alignment explanation
Indices: 90085279--90085367 Score: 160
Period size: 37 Copynumber: 2.4 Consensus size: 37
90085269 TCATAGTTAG
*
90085279 CGGGTCTCACCCGGACAAAATCTCCACACGTAGTCAT
1 CGGGTCTTACCCGGACAAAATCTCCACACGTAGTCAT
*
90085316 CGGGTCTTACCCGGACATAATCTCCACACGTAGTCAT
1 CGGGTCTTACCCGGACAAAATCTCCACACGTAGTCAT
90085353 CGGGTCTTACCCGGA
1 CGGGTCTTACCCGGA
90085368 ATATATTTCC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (37 bp):
CGGGTCTTACCCGGACAAAATCTCCACACGTAGTCAT
Found at i:90085566 original size:48 final size:48
Alignment explanation
Indices: 90085508--90085797 Score: 492
Period size: 48 Copynumber: 6.0 Consensus size: 48
90085498 ATATACACAC
* * *
90085508 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
90085556 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
90085604 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
90085652 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* ** *
90085700 ATCTCATATATATTTCAC-CTTAGCCATAGGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACAT
*
90085748 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
90085796 AT
1 AT
90085798 TTGTCTTGTA
Statistics
Matches: 230, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
47 1 0.00
48 228 0.99
49 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:90100499 original size:20 final size:20
Alignment explanation
Indices: 90100476--90100564 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
90100466 CAATCTAAAT
90100476 TAAAATACTGAAATTCAGGA
1 TAAAATACTGAAATTCAGGA
* *
90100496 TAAAAT-C--AAATCCA-AA
1 TAAAATACTGAAATTCAGGA
*
90100512 TTAAAATACTGAAATTTAGGA
1 -TAAAATACTGAAATTCAGGA
*
90100533 TAAAATCCTGAAATTCAGGA
1 TAAAATACTGAAATTCAGGA
90100553 TAAGAATACTGA
1 TAA-AATACTGA
90100565 TGTGGCATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
16 1 0.02
17 12 0.22
18 1 0.02
19 1 0.02
20 32 0.58
21 8 0.15
ACGTcount: A:0.51, C:0.11, G:0.12, T:0.26
Consensus pattern (20 bp):
TAAAATACTGAAATTCAGGA
Found at i:90100513 original size:37 final size:37
Alignment explanation
Indices: 90100460--90100539 Score: 133
Period size: 37 Copynumber: 2.2 Consensus size: 37
90100450 TATCCTGAAA
* *
90100460 AAAATCCAATCTAAATTAAAATACTGAAATTCAGGAT
1 AAAATCAAATCCAAATTAAAATACTGAAATTCAGGAT
*
90100497 AAAATCAAATCCAAATTAAAATACTGAAATTTAGGAT
1 AAAATCAAATCCAAATTAAAATACTGAAATTCAGGAT
90100534 AAAATC
1 AAAATC
90100540 CTGAAATTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.26
Consensus pattern (37 bp):
AAAATCAAATCCAAATTAAAATACTGAAATTCAGGAT
Found at i:90101691 original size:11 final size:10
Alignment explanation
Indices: 90101673--90101728 Score: 58
Period size: 10 Copynumber: 5.2 Consensus size: 10
90101663 TTGTTGTTTG
90101673 ATTTTAATTT
1 ATTTTAATTT
90101683 ATCTTTAATTTT
1 AT-TTTAA-TTT
*
90101695 ATGTTAATTT
1 ATTTTAATTT
*
90101705 AATTTAATTT
1 ATTTTAATTT
90101715 AATTCTTAATTT
1 -ATT-TTAATTT
90101727 AT
1 AT
90101729 GCTCTTTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 13 0.34
11 13 0.34
12 12 0.32
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (10 bp):
ATTTTAATTT
Found at i:90101701 original size:22 final size:23
Alignment explanation
Indices: 90101676--90101728 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
90101666 TTGTTTGATT
* * *
90101676 TTAATTTATCTTTAATTTTA-TG
1 TTAATTTATATTTAATTTAATTC
90101698 TTAATTTA-ATTTAATTTAATTC
1 TTAATTTATATTTAATTTAATTC
90101720 TTAATTTAT
1 TTAATTTAT
90101729 GCTCTTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (23 bp):
TTAATTTATATTTAATTTAATTC
Found at i:90101708 original size:5 final size:5
Alignment explanation
Indices: 90101675--90101718 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
90101665 GTTGTTTGAT
* *
90101675 TTTAA TTTATC TTTAA TTTTA TGTTAA TTTAA TTTAA TTTAA TT
1 TTTAA TTTA-A TTTAA TTTAA T-TTAA TTTAA TTTAA TTTAA TT
90101719 CTTAATTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 25 0.76
6 8 0.24
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (5 bp):
TTTAA
Found at i:90101711 original size:10 final size:10
Alignment explanation
Indices: 90101675--90101718 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
90101665 GTTGTTTGAT
*
90101675 TTTAATTTATC
1 TTTAATTTA-A
*
90101686 TTTAATTTTA
1 TTTAATTTAA
90101696 TGTTAATTTAA
1 T-TTAATTTAA
90101707 TTTAATTTAA
1 TTTAATTTAA
90101717 TT
1 TT
90101719 CTTAATTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 12 0.41
11 17 0.59
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTAATTTAA
Found at i:90106652 original size:39 final size:39
Alignment explanation
Indices: 90106580--90106846 Score: 410
Period size: 39 Copynumber: 6.8 Consensus size: 39
90106570 CCACCACAAA
* * *
90106580 GCCTGCGGGACTTTAAGCCCGGATATAATACCAGCAC-AAA
1 GCCTTCGGGAC-TT-AGCCCGGATATAACACCAGCACGAAT
*
90106620 GCCTGCGGGACTTTAGCCCGGATATAACACCAGCACGAAT
1 GCCTTCGGGAC-TTAGCCCGGATATAACACCAGCACGAAT
* * *
90106660 GCCTTCGGGGCTTAGCCCGAATATAACACGAGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
90106699 GCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
*
90106738 GCCTTCGGGACTTAGCCCGGATATAACACCAGCATGAAT
1 GCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
* *
90106777 GCCTTCAGGATTTAGCCCGGATATAACACCAGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
90106816 GCCTTCGGGACTTAGCCCGGATATAACACCA
1 GCCTTCGGGACTTAGCCCGGATATAACACCA
90106847 TTATAAAGTC
Statistics
Matches: 211, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 186 0.88
40 25 0.12
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (39 bp):
GCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
Found at i:90108996 original size:3 final size:3
Alignment explanation
Indices: 90108982--90109016 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
90108972 CTCTTCCTTG
* *
90108982 TCA TCG TCA TCA TCA TCA TCA TCA TTA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
90109017 CTCTCCTTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.31, G:0.03, T:0.37
Consensus pattern (3 bp):
TCA
Found at i:90111090 original size:18 final size:17
Alignment explanation
Indices: 90111051--90111093 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
90111041 GACAAGGTAC
90111051 ATAAAAAATTTATTGAA
1 ATAAAAAATTTATTGAA
90111068 ATAAAAACATTTACTT-AA
1 ATAAAAA-ATTTA-TTGAA
*
90111086 CTAAAAAA
1 ATAAAAAA
90111094 AATAAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 8 0.35
18 13 0.57
19 2 0.09
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.30
Consensus pattern (17 bp):
ATAAAAAATTTATTGAA
Found at i:90115773 original size:27 final size:27
Alignment explanation
Indices: 90115735--90115793 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
90115725 CAAGTATATT
90115735 CATGAACTTCTTCATGAAACTAAAATG
1 CATGAACTTCTTCATGAAACTAAAATG
*
90115762 CATGATCTTCTTCATGAAACTAAAATG
1 CATGAACTTCTTCATGAAACTAAAATG
90115789 CATGA
1 CATGA
90115794 CAATTAAGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
CATGAACTTCTTCATGAAACTAAAATG
Found at i:90116778 original size:23 final size:22
Alignment explanation
Indices: 90116728--90116783 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
90116718 TTTAGTTAAA
*
90116728 ATTTAAATTTATTATATCCTTT
1 ATTTAAATTTATTATATCCTAT
* *
90116750 ATTTTAAGTTTATTTTATCCATAT
1 A-TTTAAATTTATTATATCC-TAT
90116774 ATTTAAATTT
1 ATTTAAATTT
90116784 TGAAATCTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 1 0.04
23 24 0.86
24 3 0.11
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (22 bp):
ATTTAAATTTATTATATCCTAT
Found at i:90121828 original size:21 final size:22
Alignment explanation
Indices: 90121796--90121838 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
90121786 TTTAACAGCT
*
90121796 AATAATTTAAATAATTTTTTTG
1 AATAATTTAAATAATTATTTTG
90121818 AATAA-TTAAATAATTATTTTG
1 AATAATTTAAATAATTATTTTG
90121839 CAACTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (22 bp):
AATAATTTAAATAATTATTTTG
Found at i:90122535 original size:15 final size:15
Alignment explanation
Indices: 90122515--90122544 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
90122505 CTTTTTTGGC
*
90122515 CGATTTGCTTTCTGT
1 CGATTTGCTCTCTGT
90122530 CGATTTGCTCTCTGT
1 CGATTTGCTCTCTGT
90122545 TTTACCCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.20, T:0.50
Consensus pattern (15 bp):
CGATTTGCTCTCTGT
Found at i:90123598 original size:19 final size:19
Alignment explanation
Indices: 90123574--90123610 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
90123564 GCATGACCTC
90123574 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
90123593 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
90123611 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:90125583 original size:59 final size:59
Alignment explanation
Indices: 90125520--90125803 Score: 161
Period size: 61 Copynumber: 4.7 Consensus size: 59
90125510 GTAATTGAAA
* * *
90125520 ATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATT
1 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
* * * * * * *
90125579 ATATATTATGATTTTAGAA-A-ATTCATATAAGAA-TAT-TTAATATTAAGAATTTTATTA-AAT
1 ATATATT-TTA-ATTAAAATATATTTA-ATAATAATTATGTTAA-ATT-A-TATTTTA-TAGTAT
90125639 T
59 T
* * * *
90125640 ATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATC
1 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
* * ** * * ** * * *
90125699 ATATATTATGATTTCAGTA-AATTAAT-ATAAGAATATTAATTATTAAGAATTTTATTA-AATT
1 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAA--ATT-A-TATTTTA-TAGTATT
*
90125760 ATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 ATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
90125804 ATGATTAAAT
Statistics
Matches: 159, Mismatches: 46, Indels: 37
0.66 0.19 0.15
Matches are distributed among these distances:
57 9 0.06
58 11 0.07
59 46 0.29
60 19 0.12
61 50 0.31
62 15 0.09
63 5 0.03
64 4 0.03
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (59 bp):
ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
Found at i:90125653 original size:18 final size:17
Alignment explanation
Indices: 90125627--90125661 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
90125617 AATATTAAGA
*
90125627 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
90125644 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
90125662 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:90125654 original size:120 final size:120
Alignment explanation
Indices: 90125520--90125803 Score: 444
Period size: 120 Copynumber: 2.4 Consensus size: 120
90125510 GTAATTGAAA
* * * *
90125520 ATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATTATATAT
1 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATAT
* *
90125585 TATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAATT
66 TATGATTTCAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATT
* * *
90125640 ATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATAT
1 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATAT
*
90125705 TATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
66 TATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
*
90125760 ATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 ATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
90125804 ATGATTAAAT
Statistics
Matches: 149, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
119 4 0.03
120 140 0.94
121 5 0.03
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATAT
TATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:90125775 original size:18 final size:17
Alignment explanation
Indices: 90125747--90125781 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
90125737 ATTATTAAGA
*
90125747 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
90125764 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
90125782 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:90125781 original size:16 final size:16
Alignment explanation
Indices: 90125747--90125801 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
90125737 ATTATTAAGA
90125747 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
90125764 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
90125780 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
90125794 ATGTTTAA
1 AT-TTTAA
90125802 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:90126038 original size:16 final size:16
Alignment explanation
Indices: 90126017--90126084 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
90126007 GATTTGCTAT
*
90126017 TACACCTCTAATTCAA
1 TACACCTCTAATCCAA
*
90126033 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
90126049 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
90126065 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
90126081 TACA
1 TACA
90126085 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:90126393 original size:39 final size:39
Alignment explanation
Indices: 90126309--90126384 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
90126299 CAATTCAATA
*
90126309 ATAAAAACGCCACTAAAAACCAGCATTAGCAGCGCTTCT
1 ATAAAAACGCCACTAAAAACCAGCATTAGCAGCGATTCT
* * *
90126348 ATAAAAACGCCACTAAAAACGATCATTAGCGGCGATT
1 ATAAAAACGCCACTAAAAACCAGCATTAGCAGCGATT
90126385 TTGAAAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.42, C:0.25, G:0.14, T:0.18
Consensus pattern (39 bp):
ATAAAAACGCCACTAAAAACCAGCATTAGCAGCGATTCT
Found at i:90126472 original size:41 final size:40
Alignment explanation
Indices: 90126372--90126479 Score: 121
Period size: 40 Copynumber: 2.7 Consensus size: 40
90126362 AAAAACGATC
* * *
90126372 ATTAGCGGCGATTT-TGAAAAAATGCCGCTATAGATTGACA
1 ATTAGCGGCGCTTTAAG-AAAAACGCCGCTATAGATTGACA
* * * *
90126412 ATTAGTGGCGCTTTTAGAAAAACGCCGCTATAGGTTGACT
1 ATTAGCGGCGCTTTAAGAAAAACGCCGCTATAGATTGACA
90126452 ATTAGCGGCGCTTTAA-AGAAAACGCCGC
1 ATTAGCGGCGCTTTAAGA-AAAACGCCGC
90126480 AAAACAAGTG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.02
40 56 0.97
41 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (40 bp):
ATTAGCGGCGCTTTAAGAAAAACGCCGCTATAGATTGACA
Found at i:90127064 original size:21 final size:20
Alignment explanation
Indices: 90127040--90127119 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 20
90127030 TAGTTGGAGT
* *
90127040 TTAAGATTTAGCGGTTATGGG
1 TTAAGATTAAG-GGTTAGGGG
*
90127061 TTAAAAATTAAGGGTTAGGGG
1 TT-AAGATTAAGGGTTAGGGG
*
90127082 ATAATGATTAAGGGTTAGGGG
1 TTAA-GATTAAGGGTTAGGGG
*
90127103 TTAAGGGTTAAGGGTTA
1 TTAA-GATTAAGGGTTA
90127120 AAAGTTTATG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 2 0.04
21 40 0.82
22 7 0.14
ACGTcount: A:0.31, C:0.01, G:0.35, T:0.33
Consensus pattern (20 bp):
TTAAGATTAAGGGTTAGGGG
Found at i:90127105 original size:7 final size:7
Alignment explanation
Indices: 90127068--90127120 Score: 61
Period size: 7 Copynumber: 7.6 Consensus size: 7
90127058 GGGTTAAAAA
90127068 TTAAGGG
1 TTAAGGG
*
90127075 TTAGGGG
1 TTAAGGG
* * *
90127082 ATAATGA
1 TTAAGGG
90127089 TTAAGGG
1 TTAAGGG
*
90127096 TTAGGGG
1 TTAAGGG
90127103 TTAAGGG
1 TTAAGGG
90127110 TTAAGGG
1 TTAAGGG
90127117 TTAA
1 TTAA
90127121 AAGTTTATGG
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.30, C:0.00, G:0.40, T:0.30
Consensus pattern (7 bp):
TTAAGGG
Found at i:90129823 original size:20 final size:19
Alignment explanation
Indices: 90129800--90129838 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
90129790 CCAAACAAAT
90129800 AAAAAATAATATAATAACCC
1 AAAAAATAATATAA-AACCC
* *
90129820 AAAACATTATATAAAACCC
1 AAAAAATAATATAAAACCC
90129839 TTTTAGGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.62, C:0.18, G:0.00, T:0.21
Consensus pattern (19 bp):
AAAAAATAATATAAAACCC
Found at i:90131125 original size:24 final size:24
Alignment explanation
Indices: 90131097--90131143 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
90131087 TTAATAAATT
*
90131097 AAATATTCTCATACGTTTTATCAC
1 AAATATTATCATACGTTTTATCAC
* *
90131121 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCATACGTTTTATCA
90131144 TTTAAGTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (24 bp):
AAATATTATCATACGTTTTATCAC
Found at i:90131333 original size:19 final size:19
Alignment explanation
Indices: 90131309--90131372 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
90131299 ACATGCTATT
90131309 TTAATTAATATAATTTGGA
1 TTAATTAATATAATTTGGA
* *
90131328 TTAATTTATTTAAATATT--A
1 TTAATTAATAT-AAT-TTGGA
90131347 TTTAATTAATATAATTTGGA
1 -TTAATTAATATAATTTGGA
90131367 TTAATT
1 TTAATT
90131373 TATTTAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
18 2 0.06
19 19 0.53
20 13 0.36
21 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (19 bp):
TTAATTAATATAATTTGGA
Found at i:90131351 original size:39 final size:39
Alignment explanation
Indices: 90131308--90131383 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
90131298 GACATGCTAT
90131308 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
90131347 TTTAATTAATATAATTTGGATTAATTTATTTAAATAT
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATAT
90131384 ATAAGAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
Found at i:90131503 original size:9 final size:9
Alignment explanation
Indices: 90131487--90131633 Score: 156
Period size: 9 Copynumber: 16.3 Consensus size: 9
90131477 ATACTGGAAT
90131487 TTACATAAC
1 TTACATAAC
*
90131496 TCACATAAC
1 TTACATAAC
90131505 TTACACATAAC
1 TT--ACATAAC
*
90131516 TTATATAAC
1 TTACATAAC
*
90131525 TCACATAAC
1 TTACATAAC
90131534 TTACATAAC
1 TTACATAAC
*
90131543 TTATATAAC
1 TTACATAAC
90131552 TTACATAAC
1 TTACATAAC
*
90131561 TCACATAAC
1 TTACATAAC
*
90131570 TCACATAAC
1 TTACATAAC
90131579 TTACATAAC
1 TTACATAAC
90131588 TTACATAA-
1 TTACATAAC
90131596 -TACATAA-
1 TTACATAAC
* * *
90131603 GTAGATATC
1 TTACATAAC
*
90131612 ATATCATAAC
1 TTA-CATAAC
90131622 TTACATAAC
1 TTACATAAC
90131631 TTA
1 TTA
90131634 ATTATACTTA
Statistics
Matches: 117, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
7 7 0.06
8 5 0.04
9 90 0.77
10 6 0.05
11 9 0.08
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.32
Consensus pattern (9 bp):
TTACATAAC
Found at i:90137136 original size:21 final size:21
Alignment explanation
Indices: 90137104--90137176 Score: 101
Period size: 21 Copynumber: 3.5 Consensus size: 21
90137094 TAGAGCGGAT
* *
90137104 GCAGCAGTGAGGGAGGCAGTG
1 GCAGCAGCGAGGGAGGCAATG
*
90137125 GCAGTAGCGAGGGAGGCAATG
1 GCAGCAGCGAGGGAGGCAATG
**
90137146 GCAGCAGCGAGGGAGGCAAAA
1 GCAGCAGCGAGGGAGGCAATG
90137167 GCAGCAGCGA
1 GCAGCAGCGA
90137177 TGGCAGTAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.30, C:0.18, G:0.47, T:0.05
Consensus pattern (21 bp):
GCAGCAGCGAGGGAGGCAATG
Found at i:90137471 original size:31 final size:31
Alignment explanation
Indices: 90137409--90137494 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 31
90137399 TTAGATTTAA
* *
90137409 TGTTTTTTATTGTATTTTTTATGCTACATTTGC
1 TGTTTTTTATTGGA--TTTAATGCTACATTTGC
* *
90137442 TGTTTTTTATTGGATTTCATGCTATATTTGC
1 TGTTTTTTATTGGATTTAATGCTACATTTGC
**
90137473 TGTTTTTGGTTGGATTTAATGC
1 TGTTTTTTATTGGATTTAATGC
90137495 AGGAAGGGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 34 0.72
33 13 0.28
ACGTcount: A:0.15, C:0.08, G:0.17, T:0.59
Consensus pattern (31 bp):
TGTTTTTTATTGGATTTAATGCTACATTTGC
Found at i:90144167 original size:41 final size:40
Alignment explanation
Indices: 90144106--90144216 Score: 177
Period size: 41 Copynumber: 2.8 Consensus size: 40
90144096 GCACAAAAAT
* *
90144106 GCCGCTAAAACTGAGTAATAGTGGCGTTTTTGGTCCAAAC
1 GCCGCTAAAACTGAGTAATAGCGGCGTTTTTAGTCCAAAC
* *
90144146 GCCGCTAAAAACTTAGAAATAGCGGCGTTTTTAGTCCAAAC
1 GCCGCT-AAAACTGAGTAATAGCGGCGTTTTTAGTCCAAAC
90144187 GCCGCTAAAACTGAGTAATAGCGGCGTTTT
1 GCCGCTAAAACTGAGTAATAGCGGCGTTTT
90144217 CTAAGAAAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 28 0.44
41 36 0.56
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCGCTAAAACTGAGTAATAGCGGCGTTTTTAGTCCAAAC
Found at i:90144227 original size:40 final size:39
Alignment explanation
Indices: 90144101--90144231 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
90144091 CGTTTGCACA
* * *
90144101 AAAATGCCGCTAAAACTGAGTAATAGTGGCGTTTTTGGTC
1 AAAACGCCGCTAAAACTGAGTAATAGCGGCGTTTTTAG-C
* * *
90144141 CAAACGCCGCTAAAAACTTAGAAATAGCGGCGTTTTTAGTC
1 AAAACGCCGCT-AAAACTGAGTAATAGCGGCGTTTTTAG-C
*
90144182 CAAACGCCGCTAAAACTGAGTAATAGCGGCGTTTTCTAAG-
1 AAAACGCCGCTAAAACTGAGTAATAGCGGCGTTTT-T-AGC
90144222 AAAACGCCGC
1 AAAACGCCGC
90144232 AAATAGTTGA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
40 40 0.51
41 37 0.47
42 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (39 bp):
AAAACGCCGCTAAAACTGAGTAATAGCGGCGTTTTTAGC
Found at i:90144389 original size:18 final size:17
Alignment explanation
Indices: 90144357--90144391 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
90144347 ATTTTCTTAT
*
90144357 TTTTGTTTTGAATTTGA
1 TTTTATTTTGAATTTGA
90144374 TTTTATTTTGATATTTGA
1 TTTTATTTTGA-ATTTGA
90144392 AACTGATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.66
Consensus pattern (17 bp):
TTTTATTTTGAATTTGA
Found at i:90144979 original size:18 final size:18
Alignment explanation
Indices: 90144956--90144994 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
90144946 TAATTAGTAC
90144956 ATGTTTAGAGTATTATAT
1 ATGTTTAGAGTATTATAT
*
90144974 ATGTTTATAGTATTATAT
1 ATGTTTAGAGTATTATAT
90144992 ATG
1 ATG
90144995 GTTCTAGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (18 bp):
ATGTTTAGAGTATTATAT
Found at i:90145159 original size:36 final size:37
Alignment explanation
Indices: 90145075--90145159 Score: 93
Period size: 36 Copynumber: 2.3 Consensus size: 37
90145065 AAATATTAAC
* * *
90145075 GTTTATGGTTTACAAATTTAGGGTCTATGGAATTAGG
1 GTTTATGGTTTACAAATTTAAGGTCTAAGGAATTAGA
* * *
90145112 GTTTA-GAGTTTA-AAATTTAAGGTTTAAGGTATTTGA
1 GTTTATG-GTTTACAAATTTAAGGTCTAAGGAATTAGA
90145148 GTTTATGGTTTA
1 GTTTATGGTTTA
90145160 GTTTATAAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
36 29 0.73
37 11 0.28
ACGTcount: A:0.28, C:0.02, G:0.25, T:0.45
Consensus pattern (37 bp):
GTTTATGGTTTACAAATTTAAGGTCTAAGGAATTAGA
Found at i:90148211 original size:64 final size:64
Alignment explanation
Indices: 90148143--90148276 Score: 223
Period size: 64 Copynumber: 2.1 Consensus size: 64
90148133 TAATATTTCT
* * *
90148143 ATATTTCTATCATGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATAAAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATAAAA
* *
90148207 ATATTTCTATCACGATTTTTGATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATAAAA
90148271 ATATTT
1 ATATTT
90148277 AATAAAATAT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.38, C:0.10, G:0.04, T:0.48
Consensus pattern (64 bp):
ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATAAAA
Found at i:90148289 original size:64 final size:64
Alignment explanation
Indices: 90148156--90148290 Score: 184
Period size: 64 Copynumber: 2.1 Consensus size: 64
90148146 TTTCTATCAT
* * * * *
90148156 GATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATAAAAATATTTCTATCAC
1 GATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATAAAAATATTTATATAAA
* *
90148220 GATTTTTGATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAAATATTTA-ATAAA
1 GATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATAAAAATATTTATATAAA
90148283 -ATATTTTA
1 GAT-TTTTA
90148291 TATAGTTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
62 2 0.03
63 7 0.11
64 53 0.85
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (64 bp):
GATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATAAAAATATTTATATAAA
Found at i:90148352 original size:24 final size:24
Alignment explanation
Indices: 90148324--90148394 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
90148314 ATTATTATTG
*
90148324 AAATATTCTCTTCCGTTTTATCAC
1 AAATATTATCTTCCGTTTTATCAC
* *
90148348 GAATATTAT-TGTCTGTTTTATCAC
1 AAATATTATCT-TCCGTTTTATCAC
* *
90148372 AAATATTATCGTCCATTTTATCA
1 AAATATTATCTTCCGTTTTATCA
90148395 TTTAAGTTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
23 1 0.03
24 37 0.97
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCTTCCGTTTTATCAC
Found at i:90148910 original size:241 final size:241
Alignment explanation
Indices: 90148436--90149142 Score: 1344
Period size: 241 Copynumber: 2.9 Consensus size: 241
90148426 ATACCTTTTT
*
90148436 AAGTTCTATCGAGCTCAATTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
1 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
90148501 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
66 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
90148566 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
131 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
90148631 AACGTCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
196 AACGTCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
*
90148677 AAGTTCTATCGAGTTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
1 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
90148742 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTTAAATATTTTAAAGATTCAAAGTATATAG
66 TACAACAATAGCTGACCTTCTCTCCAACC-TTTTTTTAAATATTTTAAAGATTCAAAGTATATAG
90148807 GCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAA
130 GCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAA
*
90148872 CAACGTCACGTATGATGCATCTTAAAAAATTC-AAAAGACTTGAAAA
195 CAACGTCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
* * *
90148918 AAGTTCTATCGAGCTCATTTACTATTTAATATTCATTACCATGTAGCTTGCTTGTCCATTAAAAT
1 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
90148983 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
66 TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
90149048 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
131 CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
90149113 AACGTCACGTATGATGAATCTTAAAAAATT
196 AACGTCACGTATGATGAATCTTAAAAAATT
90149143 ACTATATTCA
Statistics
Matches: 457, Mismatches: 8, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
240 130 0.28
241 196 0.43
242 131 0.29
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (241 bp):
AAGTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTGCATTAAAAT
TACAACAATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGG
CTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAAC
AACGTCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
Found at i:90149285 original size:9 final size:9
Alignment explanation
Indices: 90149262--90149389 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
90149252 ATTGATCATT
*
90149262 ACTTAAATA
1 ACTTACATA
*
90149271 AATTACATA
1 ACTTACATA
90149280 ACTTACATA
1 ACTTACATA
* *
90149289 ACTCATATA
1 ACTTACATA
90149298 ACTTACATA
1 ACTTACATA
*
90149307 ATTTACATAACA
1 ACTTACAT---A
90149319 ACTTACATA
1 ACTTACATA
*
90149328 ACTCACATA
1 ACTTACATA
90149337 ACTTACATA
1 ACTTACATA
*
90149346 ATTTACATA
1 ACTTACATA
*
90149355 ACTCACATA
1 ACTTACATA
*
90149364 ACGTACATAACA
1 ACTTACAT---A
90149376 ACTTACATA
1 ACTTACATA
90149385 ACTTA
1 ACTTA
90149390 ACTATTACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:90149331 original size:39 final size:39
Alignment explanation
Indices: 90149279--90149356 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
90149269 TAAATTACAT
*
90149279 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
90149318 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
90149357 TCACATAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:90149356 original size:57 final size:57
Alignment explanation
Indices: 90149275--90149387 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
90149265 TAAATAAATT
* * **
90149275 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
90149332 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
90149388 TAACTATTAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:90155286 original size:33 final size:33
Alignment explanation
Indices: 90155240--90155317 Score: 97
Period size: 31 Copynumber: 2.4 Consensus size: 33
90155230 AATTAATGAC
* * *
90155240 TTTGGTTGTATTTTTTATGTTAAATTTGTTGTT
1 TTTGGTTGCATTTTTTATATTAAATTTGTTGTA
*
90155273 TTTGGTTGCA--TTTTATATTATATTTGTTGTA
1 TTTGGTTGCATTTTTTATATTAAATTTGTTGTA
*
90155304 TTTGGTTGGATTTT
1 TTTGGTTGCATTTT
90155318 AATGCAGGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
31 27 0.71
33 11 0.29
ACGTcount: A:0.15, C:0.01, G:0.19, T:0.64
Consensus pattern (33 bp):
TTTGGTTGCATTTTTTATATTAAATTTGTTGTA
Found at i:90155298 original size:31 final size:31
Alignment explanation
Indices: 90155252--90155318 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
90155242 TGGTTGTATT
* *
90155252 TTTTATGTTAAATTTGTTGTTTTTGGTTGCA
1 TTTTATATTAAATTTGTTGTATTTGGTTGCA
* *
90155283 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGTTGTATTTGGTTGCA
90155314 TTTTA
1 TTTTA
90155319 ATGCAGGAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.18, C:0.01, G:0.18, T:0.63
Consensus pattern (31 bp):
TTTTATATTAAATTTGTTGTATTTGGTTGCA
Found at i:90155419 original size:43 final size:43
Alignment explanation
Indices: 90155393--90155599 Score: 351
Period size: 43 Copynumber: 4.8 Consensus size: 43
90155383 GTGGGAAAAG
* *
90155393 CGCCGCTAAAAGCCTTGATCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAACAAA
*
90155436 CGCCGCTAAAAGCCTTGACCTTTTGCGGCGCTTTTCCAACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAACAAA
* *
90155479 TGCCGCTAAAAGCTTTGACCTTTAGCGGCGCTTTTCCAACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAACAAA
*
90155522 CGCCGCTAAAAGCCTTGACCTTTTGCGGCGCTTTTCCAACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAACAAA
*
90155565 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
90155600 TTTCAATAAA
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 153 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAACAAA
Found at i:90167990 original size:16 final size:15
Alignment explanation
Indices: 90167964--90167993 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
90167954 ATCATGCATG
90167964 TGTATATATATAATA
1 TGTATATATATAATA
90167979 TGTATGATATATAAT
1 TGTAT-ATATATAAT
90167994 GTTGAATATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (15 bp):
TGTATATATATAATA
Found at i:90193900 original size:10 final size:11
Alignment explanation
Indices: 90193877--90193902 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
90193867 CAAAGATCTC
90193877 AAAAACATTAA
1 AAAAACATTAA
90193888 AAAAACATTAA
1 AAAAACATTAA
90193899 AAAA
1 AAAA
90193903 GGGGCTAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAACATTAA
Found at i:90198660 original size:374 final size:374
Alignment explanation
Indices: 90197971--90198715 Score: 1373
Period size: 374 Copynumber: 2.0 Consensus size: 374
90197961 GCCAAATTAC
90197971 AACAGATCAAGGGACAAGCCTGCACTGATAAAGGTTGGGTGTGGACCCTCAGCAATACCAATGCT
1 AACAGATCAAGGGACAAGCCTGCACTGATAAAGGTTGGGTGTGGACCCTCAGCAATACCAATGCT
* *
90198036 AACTTGTTTTAACTCATTAATAGTGGCTTGATTTCCTTCTTCAAATGATGAAGAAGCTTATTAGG
66 AACTTGTTTCAACTCATTAATAGTGGCTTGATTTCCTTCTTCAAATGACGAAGAAGCTTATTAGG
*
90198101 CTTTCTCTTCTCGAGACTCTTCATTGATCTCTTTAACAAATAGAGAATAAGATGTAAGGGCTTCA
131 CTTTCTCTTCTCGAGACTCTTCATTGATCTCTTTAACAAATAGACAATAAGATGTAAGGGCTTCA
90198166 TATTTTAACACTCTTCCTTCATGGATGTATTAGTTATGACTACCATGTATTATTTGGATTTTAAG
196 TATTTTAACACTCTTCCTTCATGGATGTATTAGTTATGACTACCATGTATTATTTGGATTTTAAG
*
90198231 ACTTCACCAGTAGTTATCTTCAATTAGGACTGCCTTTTCATCCACGAGCTAATTTCACTGTGAAA
261 ACTTCACCAGTAGTTATCTTCAATTAGGACTGCCTTTTCATCCACGAGCTAATTTCACTATGAAA
*
90198296 ATGCGTTAATATTTTTCGAGCAGAAGCTTTTTTTCCCTAATGCGACTAT
326 ATGCGTTAATATTTTTCGAGCAGAAGCTTTTTTTCCCTAATACGACTAT
*
90198345 AACAGATCAAGGGACAAGCCTGCACTGATAAAGGTTGGGTGTGGATCCTCAGCAATACCAATGCT
1 AACAGATCAAGGGACAAGCCTGCACTGATAAAGGTTGGGTGTGGACCCTCAGCAATACCAATGCT
*
90198410 AACTTGTTTCAACTCATTAATAGTGGCTTGATTTCCTTCTTCAAATGACGAAGAAGCTTATTGGG
66 AACTTGTTTCAACTCATTAATAGTGGCTTGATTTCCTTCTTCAAATGACGAAGAAGCTTATTAGG
*
90198475 CTTTCTCTTCTCGAGACTCTTCATTGATCTCTTTAACAGATAGACAATAAGATGTAAGGGCTTCA
131 CTTTCTCTTCTCGAGACTCTTCATTGATCTCTTTAACAAATAGACAATAAGATGTAAGGGCTTCA
*
90198540 TATTTTAACACTCTTCCTTCATGGATGTATTAGTTATGACTACCATGTATTATTTGGCTTTTAAG
196 TATTTTAACACTCTTCCTTCATGGATGTATTAGTTATGACTACCATGTATTATTTGGATTTTAAG
* *
90198605 ACTTCACCAGTAGTTATCTTCAATTAGGACTGCCTTTTCATCCACGAGGTAATTTCGCTATGAAA
261 ACTTCACCAGTAGTTATCTTCAATTAGGACTGCCTTTTCATCCACGAGCTAATTTCACTATGAAA
* *
90198670 ATGCGTTAATATTTTTCGAGCGGGAGCTTTTTTTCCCTAATACGAC
326 ATGCGTTAATATTTTTCGAGCAGAAGCTTTTTTTCCCTAATACGAC
90198716 CAACCTTTCC
Statistics
Matches: 358, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
374 358 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (374 bp):
AACAGATCAAGGGACAAGCCTGCACTGATAAAGGTTGGGTGTGGACCCTCAGCAATACCAATGCT
AACTTGTTTCAACTCATTAATAGTGGCTTGATTTCCTTCTTCAAATGACGAAGAAGCTTATTAGG
CTTTCTCTTCTCGAGACTCTTCATTGATCTCTTTAACAAATAGACAATAAGATGTAAGGGCTTCA
TATTTTAACACTCTTCCTTCATGGATGTATTAGTTATGACTACCATGTATTATTTGGATTTTAAG
ACTTCACCAGTAGTTATCTTCAATTAGGACTGCCTTTTCATCCACGAGCTAATTTCACTATGAAA
ATGCGTTAATATTTTTCGAGCAGAAGCTTTTTTTCCCTAATACGACTAT
Found at i:90201394 original size:12 final size:12
Alignment explanation
Indices: 90201377--90201401 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
90201367 TGATGATCTT
90201377 TGGCTACTTGTA
1 TGGCTACTTGTA
90201389 TGGCTACTTGTA
1 TGGCTACTTGTA
90201401 T
1 T
90201402 ATTGGATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (12 bp):
TGGCTACTTGTA
Found at i:90205370 original size:20 final size:20
Alignment explanation
Indices: 90205347--90205410 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 20
90205337 TTGACTAAAT
90205347 TACTGGTAGTTTATCTGCAA
1 TACTGGTAGTTTATCTGCAA
* ** * *
90205367 TACTGGCAGCCTGTCTGCAC
1 TACTGGTAGTTTATCTGCAA
* * *
90205387 TAGTGGTAGTTTATTTGCAT
1 TACTGGTAGTTTATCTGCAA
90205407 TACT
1 TACT
90205411 AGTTACTTGA
Statistics
Matches: 31, Mismatches: 13, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.39
Consensus pattern (20 bp):
TACTGGTAGTTTATCTGCAA
Found at i:90208657 original size:4 final size:4
Alignment explanation
Indices: 90208650--90208675 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
90208640 GTTAGGAACT
90208650 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
90208676 CTTATTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:90211679 original size:24 final size:25
Alignment explanation
Indices: 90211632--90211679 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
90211622 TAACCTTAGA
90211632 ATCAAAACTCTCCGTTTTACTTAAG
1 ATCAAAACTCTCCGTTTTACTTAAG
90211657 ATCAAAACTC-CC-TGTTTACTTAA
1 ATCAAAACTCTCCGT-TTTACTTAA
90211680 ATGAGGTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 1 0.05
24 11 0.50
25 10 0.45
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.35
Consensus pattern (25 bp):
ATCAAAACTCTCCGTTTTACTTAAG
Found at i:90212890 original size:79 final size:79
Alignment explanation
Indices: 90212759--90212916 Score: 255
Period size: 79 Copynumber: 2.0 Consensus size: 79
90212749 ACTAAAATAA
*
90212759 AGTTTGTCATGTTTGAATTAGGCAACCCTTCAATGAAATCCAAGCTAACAACTGACCAAGCTCTG
1 AGTTTGTCATGTTTGAATTAGGCAACCCTTCAATGAAATCCAAGCTAACAACTAACCAAGCTCTG
90212824 CCAGGCATCGGTAG
66 CCAGGCATCGGTAG
* *
90212838 AGTTTTTCTTGTTTGAATT-GAGCAACCCTTCAATGAAATCCAAGCTAACAACTAACCAAGCTCT
1 AGTTTGTCATGTTTGAATTAG-GCAACCCTTCAATGAAATCCAAGCTAACAACTAACCAAGCTCT
* *
90212902 GTCAGGTATCGGTAG
65 GCCAGGCATCGGTAG
90212917 TGGCTGAAGG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
78 1 0.01
79 72 0.99
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (79 bp):
AGTTTGTCATGTTTGAATTAGGCAACCCTTCAATGAAATCCAAGCTAACAACTAACCAAGCTCTG
CCAGGCATCGGTAG
Found at i:90216123 original size:15 final size:16
Alignment explanation
Indices: 90216098--90216127 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
90216088 CGTGACCCCG
90216098 TTAGCTGGAGGTCCAC
1 TTAGCTGGAGGTCCAC
90216114 TTAG-TGGAGGTCCA
1 TTAGCTGGAGGTCCA
90216128 AAATACTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27
Consensus pattern (16 bp):
TTAGCTGGAGGTCCAC
Found at i:90222708 original size:33 final size:33
Alignment explanation
Indices: 90222652--90222726 Score: 93
Period size: 35 Copynumber: 2.3 Consensus size: 33
90222642 CCCTTTACAT
90222652 CCAAAAAT-TTTTACTTTCCCTCCCCCTTTTAACTC
1 CCAAAAATCTTTTACTTT-CCTCCCCC-TTTAAC-C
90222687 CCAAAAATCTTTTA-TTT-CTCCCCCTTTAACC
1 CCAAAAATCTTTTACTTTCCTCCCCCTTTAACC
*
90222718 CTAAAAATC
1 CCAAAAATC
90222727 AAAATCCTCT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
31 9 0.24
32 6 0.16
33 7 0.18
35 11 0.29
36 5 0.13
ACGTcount: A:0.28, C:0.35, G:0.00, T:0.37
Consensus pattern (33 bp):
CCAAAAATCTTTTACTTTCCTCCCCCTTTAACC
Found at i:90225937 original size:46 final size:46
Alignment explanation
Indices: 90225884--90225975 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
90225874 CTCACTCAAA
90225884 ACTATGTATTTCTTAAAAATATGTACAAATATATATATGAAGCATT
1 ACTATGTATTTCTTAAAAATATGTACAAATATATATATGAAGCATT
90225930 ACTATGTATTTCTTAAAAATATGTACAAATATATATATGAAGCATT
1 ACTATGTATTTCTTAAAAATATGTACAAATATATATATGAAGCATT
90225976 GAATCATGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (46 bp):
ACTATGTATTTCTTAAAAATATGTACAAATATATATATGAAGCATT
Found at i:90237149 original size:95 final size:95
Alignment explanation
Indices: 90236986--90237267 Score: 546
Period size: 95 Copynumber: 3.0 Consensus size: 95
90236976 CAATAACCTA
90236986 TAGGAATTTGATCTTTCAAAAAGATATTAAGAGGAGGAAATTCTTGTTACCTGGCCCATTTTCCG
1 TAGGAATTTGATCTTTCAAAAAGATATTAAGAGGAGGAAATTCTTGTTACCTGGCCCATTTTCCG
*
90237051 TTCAACTAAAAGGATAATAGCTAGCTTGTG
66 TTCAACTAAAAGGATAATAGCTAGCTTCTG
90237081 TAGGAATTTGATCTTTCAAAAAGATATTAAGAGGAGGAAATTCTTGTTACCTGGCCCATTTTCCG
1 TAGGAATTTGATCTTTCAAAAAGATATTAAGAGGAGGAAATTCTTGTTACCTGGCCCATTTTCCG
90237146 TTCAACTAAAAGGATAATAGCTAGCTTCTG
66 TTCAACTAAAAGGATAATAGCTAGCTTCTG
*
90237176 TAGGAATTTGATCTTTCAAAAAGATATTAAGAGGAGGAAATTCTTGTTACCTGACCCATTTTCCG
1 TAGGAATTTGATCTTTCAAAAAGATATTAAGAGGAGGAAATTCTTGTTACCTGGCCCATTTTCCG
90237241 TTCAACTAAAAGGATAATAGCTAGCTT
66 TTCAACTAAAAGGATAATAGCTAGCTT
90237268 TGAAACAGTC
Statistics
Matches: 185, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 185 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (95 bp):
TAGGAATTTGATCTTTCAAAAAGATATTAAGAGGAGGAAATTCTTGTTACCTGGCCCATTTTCCG
TTCAACTAAAAGGATAATAGCTAGCTTCTG
Found at i:90244693 original size:69 final size:69
Alignment explanation
Indices: 90244607--90244742 Score: 209
Period size: 69 Copynumber: 2.0 Consensus size: 69
90244597 CTGTTGTAAC
* * * *
90244607 TTTTTGATGCTGTAAAATTTAACATATAGATTATGATATATAAGCTAATGAGATAATGCAACTTT
1 TTTTTGATGCTATAAAATTTAACATATAGATAATGACATATAAGCTAACGAGATAATGCAACTTT
90244672 TTAT
66 TTAT
* * *
90244676 TTTTTGATGCTATAAAATTTAACATATAGATAATGGCATATAAGCTAACGAGATCATGTAACTTT
1 TTTTTGATGCTATAAAATTTAACATATAGATAATGACATATAAGCTAACGAGATAATGCAACTTT
90244741 TT
66 TT
90244743 GTTTATGTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (69 bp):
TTTTTGATGCTATAAAATTTAACATATAGATAATGACATATAAGCTAACGAGATAATGCAACTTT
TTAT
Found at i:90245235 original size:16 final size:16
Alignment explanation
Indices: 90245198--90245243 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
90245188 TAAATTATTG
**
90245198 ATTACAACTCTATTTT
1 ATTACAACTCTATTCC
*
90245214 AGTACAACTCTATTCC
1 ATTACAACTCTATTCC
*
90245230 ATTACATCTCTATT
1 ATTACAACTCTATT
90245244 TCAATATAGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.30, C:0.24, G:0.02, T:0.43
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:90249771 original size:18 final size:17
Alignment explanation
Indices: 90249729--90249773 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
90249719 TTATATTAAA
90249729 TTTCTTATATA-TATTC
1 TTTCTTATATATTATTC
*
90249745 TTT-TTATATATTACTTG
1 TTTCTTATATATTA-TTC
90249762 TTTCTTATATAT
1 TTTCTTATATAT
90249774 ATATATTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 7 0.28
16 5 0.20
17 5 0.20
18 8 0.32
ACGTcount: A:0.24, C:0.09, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTCTTATATATTATTC
Found at i:90249791 original size:32 final size:33
Alignment explanation
Indices: 90249729--90249797 Score: 104
Period size: 32 Copynumber: 2.1 Consensus size: 33
90249719 TTATATTAAA
* * *
90249729 TTTCTTATATATATTCTTTTTATATATTACTTG
1 TTTCTTATATATATTATATTCATATATTACTTG
90249762 TTTCTTATATATA-TATATTCATATATTACTTG
1 TTTCTTATATATATTATATTCATATATTACTTG
90249794 TTTC
1 TTTC
90249798 AAATTTATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 20 0.61
33 13 0.39
ACGTcount: A:0.26, C:0.10, G:0.03, T:0.61
Consensus pattern (33 bp):
TTTCTTATATATATTATATTCATATATTACTTG
Found at i:90249987 original size:27 final size:26
Alignment explanation
Indices: 90249936--90249987 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
90249926 TCATACTATT
* *
90249936 TATTTTAAATTGCTTTTTGTAATATC
1 TATTTTAAAGTGCTTTTTATAATATC
90249962 TATTTTAAACGTG-TTTTTATATATAT
1 TATTTTAAA-GTGCTTTTTATA-ATAT
90249988 TACTCATCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.29, C:0.06, G:0.08, T:0.58
Consensus pattern (26 bp):
TATTTTAAAGTGCTTTTTATAATATC
Found at i:90250052 original size:26 final size:26
Alignment explanation
Indices: 90250023--90250132 Score: 80
Period size: 26 Copynumber: 4.3 Consensus size: 26
90250013 TCATTTTTTT
* *
90250023 TATTTTTTATTTTAATTTGCTTTGTA
1 TATTATTTATTTTAATTTGCTTTATA
* * *
90250049 TATTATTTGTTTTAAATTGTTTTATA
1 TATTATTTATTTTAATTTGCTTTATA
* * *
90250075 CATTATTCATTTTAATTTG-TTT-CA
1 TATTATTTATTTTAATTTGCTTTATA
* * * * * *
90250099 TACTAGTTACTTCAAGTTGTTTTATA
1 TATTATTTATTTTAATTTGCTTTATA
90250125 TATTATTT
1 TATTATTT
90250133 TGTTTCATTT
Statistics
Matches: 62, Mismatches: 20, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
24 13 0.21
25 6 0.10
26 43 0.69
ACGTcount: A:0.25, C:0.06, G:0.07, T:0.62
Consensus pattern (26 bp):
TATTATTTATTTTAATTTGCTTTATA
Found at i:90251634 original size:27 final size:27
Alignment explanation
Indices: 90251602--90251656 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
90251592 CCTCCTCGCC
* *
90251602 TCTTCTGATCAGGTAGTTTTTTTTTCT
1 TCTTCTAATCAGGTAGATTTTTTTTCT
**
90251629 TCTTCTAATCTTGTAGATTTTTTTTCT
1 TCTTCTAATCAGGTAGATTTTTTTTCT
90251656 T
1 T
90251657 TTTTCCCTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.62
Consensus pattern (27 bp):
TCTTCTAATCAGGTAGATTTTTTTTCT
Found at i:90252612 original size:27 final size:26
Alignment explanation
Indices: 90252577--90252704 Score: 69
Period size: 27 Copynumber: 4.7 Consensus size: 26
90252567 GTATTGTTGC
*
90252577 AGTGCGTTCAACACCCAGTGGTGTTTT
1 AGTGAGTTCAACA-CCAGTGGTGTTTT
* *
90252604 AGTGAGTTCAA-ATGCCAGTGATGCTTT
1 AGTGAGTTCAACA--CCAGTGGTGTTTT
** **
90252631 AGCCAGTTCGAACACCAGTGGTGTCGT
1 AGTGAGTTC-AACACCAGTGGTGTTTT
* * * **
90252658 AGCGAGTTTGAACAACAGTGGAATTTT
1 AGTGAG-TTCAACACCAGTGGTGTTTT
* *
90252685 AGGGAGTTCAAAAACCAGTG
1 AGTGAGTTC-AACACCAGTG
90252705 TTATCAATGC
Statistics
Matches: 75, Mismatches: 21, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
26 3 0.04
27 67 0.89
28 4 0.05
29 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
AGTGAGTTCAACACCAGTGGTGTTTT
Found at i:90252863 original size:81 final size:81
Alignment explanation
Indices: 90252712--90252909 Score: 218
Period size: 81 Copynumber: 2.4 Consensus size: 81
90252702 GTGTTATCAA
* * ** * * ***
90252712 TGCTGATAGTGTTACAGCTAGTTTAAATGCTGGTAGTTTTGCTTCAAGTTCTAATGCTTTGGGTG
1 TGCTGATAGTGCTGCAGCTAGTTTAAATGCTGGTAGCATTGCCTCAAGTTCTAAAGCTTCCAGTG
*
90252777 TTGCAATGAGTTCTAC
66 CTGCAATGAGTTCTAC
* * *
90252793 TGCTGGTAGTGCTGCAGCTTGTTTTAATGCTGGTAGCATTGCCTCAAGTTCTAAAGCTTCCAGTG
1 TGCTGATAGTGCTGCAGCTAGTTTAAATGCTGGTAGCATTGCCTCAAGTTCTAAAGCTTCCAGTG
90252858 CTGCAATGAGTTCTAC
66 CTGCAATGAGTTCTAC
* * * * *
90252874 TTCTGTTAGT-CTTGCGGGTAGTTTGAATGCTGGTAG
1 TGCTGATAGTGC-TGCAGCTAGTTTAAATGCTGGTAG
90252910 TGTTGCTGAA
Statistics
Matches: 97, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 96 0.99
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.38
Consensus pattern (81 bp):
TGCTGATAGTGCTGCAGCTAGTTTAAATGCTGGTAGCATTGCCTCAAGTTCTAAAGCTTCCAGTG
CTGCAATGAGTTCTAC
Found at i:90254414 original size:93 final size:93
Alignment explanation
Indices: 90254255--90254534 Score: 425
Period size: 93 Copynumber: 3.0 Consensus size: 93
90254245 ATTACATGGT
* * * * * *
90254255 GGTGTTGCAACTCACGCAGAACATTTTATGCAAGGTAAAGAAACTGAGGCCAGTGTTGAGGCCCA
1 GGTGTTACAACTCATGCAGAACATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCA
*
90254320 GGTTGCTTCTAAAATGATTTCTTCTGCG
66 GGTTGCTTCTAAAATGATTTCTTCTGCA
* *
90254348 GGTGTTACAACTAATGCTGAACATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCA
1 GGTGTTACAACTCATGCAGAACATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCA
*
90254413 GGTTGCTTCTCAAATGATTTCTTCTGCA
66 GGTTGCTTCTAAAATGATTTCTTCTGCA
* * * *
90254441 GATGTTACAACTCATGCCGAGCATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCT
1 GGTGTTACAACTCATGCAGAACATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCA
*
90254506 GGTTGCTTCTGAAATGATTTCTTCTGCA
66 GGTTGCTTCTAAAATGATTTCTTCTGCA
90254534 G
1 G
90254535 ACCATGATGT
Statistics
Matches: 171, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 171 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (93 bp):
GGTGTTACAACTCATGCAGAACATTTTATGCAAGCTAAAGAAACTGAGCCCAGTGGTGAGGGCCA
GGTTGCTTCTAAAATGATTTCTTCTGCA
Found at i:90260288 original size:66 final size:66
Alignment explanation
Indices: 90260181--90260310 Score: 163
Period size: 66 Copynumber: 2.0 Consensus size: 66
90260171 TTAACTCACC
* ** * *
90260181 TTTTCTCTCTCTTAAGAAACTTGCAAAAAGAGATGTGATAAACA-AGAGGAGGATATAGTGCAAA
1 TTTTCTCTCTATTAAGAAACTTGCAAAAAGAGACATGATAAACATA-AGGAGGATAGAATGCAAA
90260245 CA
65 CA
* * * *
90260247 TTTTCTTTCTATTAAGAAACTTGCAAGAAGGGACATTATAAACATAAGGAGGATAGAATGCAAA
1 TTTTCTCTCTATTAAGAAACTTGCAAAAAGAGACATGATAAACATAAGGAGGATAGAATGCAAA
90260311 AAGAGAATTC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
66 53 0.98
67 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (66 bp):
TTTTCTCTCTATTAAGAAACTTGCAAAAAGAGACATGATAAACATAAGGAGGATAGAATGCAAAC
A
Found at i:90261686 original size:11 final size:11
Alignment explanation
Indices: 90261670--90261695 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
90261660 GTTAAATCAA
90261670 CTTATAATACT
1 CTTATAATACT
90261681 CTTATAATACT
1 CTTATAATACT
90261692 CTTA
1 CTTA
90261696 GCGTGTTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.46
Consensus pattern (11 bp):
CTTATAATACT
Found at i:90262088 original size:60 final size:59
Alignment explanation
Indices: 90262017--90262136 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 59
90262007 TTTCGAAACA
90262017 AAGGATTTTTGTGTGTTCCAAGGGTAACAGTTCAATATTATACATATTTTTCAGTTATC
1 AAGGATTTTTGTGTGTTCCAAGGGTAACAGTTCAATATTATACATATTTTTCAGTTATC
90262076 AAGGAATTTTTGTGTGTTCCAAGGGTAACAGTTCAATATTATACATATTTTTCAGTTATC
1 AAGG-ATTTTTGTGTGTTCCAAGGGTAACAGTTCAATATTATACATATTTTTCAGTTATC
90262136 A
1 A
90262137 TGGTGTTAGG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 4 0.07
60 56 0.93
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.42
Consensus pattern (59 bp):
AAGGATTTTTGTGTGTTCCAAGGGTAACAGTTCAATATTATACATATTTTTCAGTTATC
Found at i:90271972 original size:21 final size:21
Alignment explanation
Indices: 90271946--90271986 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
90271936 CGGGTGGATC
90271946 AGCTCTTATGAGCTTCTATTA
1 AGCTCTTATGAGCTTCTATTA
90271967 AGCTCTTATGAGCTTCTATT
1 AGCTCTTATGAGCTTCTATT
90271987 GGCGTGTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.44
Consensus pattern (21 bp):
AGCTCTTATGAGCTTCTATTA
Found at i:90272047 original size:40 final size:40
Alignment explanation
Indices: 90271965--90272064 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
90271955 GAGCTTCTAT
* * *
90271965 TAAGCTCTTATGAGCTTCT-ATTGGCGTGTTTCGGGTGGA
1 TAAGCTCTTATGAGCTTCTGTTTGGCGTCTTTCGGGTGAA
* *
90272004 TAAGCTCTTATGAGCTTCTGTTTGGCGTACTTT-TGTTGAA
1 TAAGCTCTTATGAGCTTCTGTTTGGCGT-CTTTCGGGTGAA
*
90272044 TAAGCTTTTATGAGCTTCTGT
1 TAAGCTCTTATGAGCTTCTGT
90272065 CTGGTATGTT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 19 0.36
40 31 0.58
41 3 0.06
ACGTcount: A:0.17, C:0.15, G:0.25, T:0.43
Consensus pattern (40 bp):
TAAGCTCTTATGAGCTTCTGTTTGGCGTCTTTCGGGTGAA
Found at i:90273164 original size:20 final size:20
Alignment explanation
Indices: 90273139--90273179 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
90273129 CCTACAATCC
* * *
90273139 AAAATTTTCAACTTTTTCCT
1 AAAATTTCCAAATGTTTCCT
90273159 AAAATTTCCAAATGTTTCCT
1 AAAATTTCCAAATGTTTCCT
90273179 A
1 A
90273180 TTTAGTCCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.20, G:0.02, T:0.44
Consensus pattern (20 bp):
AAAATTTCCAAATGTTTCCT
Found at i:90280871 original size:176 final size:177
Alignment explanation
Indices: 90280618--90281010 Score: 653
Period size: 177 Copynumber: 2.2 Consensus size: 177
90280608 ACAAGGCTTC
*
90280618 TGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATCTTTGATCTGCTCTATA
1 TGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATCTTTGATCTGCTCCATA
* * *
90280683 ACCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTT-CCCTAATACTTAGGGGGTTAAGAG
66 ACCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTAATACTTAGGGGATTAAGAC
* *
90280747 TCGTATCTTCAACCTGCTCTCTTGCTATCTCAGAGAGATAAGGTCGG
131 TCGTATCTTCAACCTACTCTCTTGCTATCTCAAAGAGATAAGGTCGG
* * *
90280794 TGGCTAAAATCTTCTCCATAGCCGATACATAGAGATAAGACTCGCCATCTTTGATCTGCTCCATA
1 TGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATCTTTGATCTGCTCCATA
* * *
90280859 GCCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGATTAAGAC
66 ACCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTAATACTTAGGGGATTAAGAC
*
90280924 TCGTATCTTCAACCTACTCTCTTGCTATTTCAAAGAGATAAGGTCGG
131 TCGTATCTTCAACCTACTCTCTTGCTATCTCAAAGAGATAAGGTCGG
*
90280971 TGGCTAAAATCTGCTCCATAATCGATACATGGAGATAAGA
1 TGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAGA
90281011 TCTGTAATTT
Statistics
Matches: 199, Mismatches: 17, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
176 99 0.50
177 100 0.50
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (177 bp):
TGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATCTTTGATCTGCTCCATA
ACCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTAATACTTAGGGGATTAAGAC
TCGTATCTTCAACCTACTCTCTTGCTATCTCAAAGAGATAAGGTCGG
Found at i:90281093 original size:132 final size:132
Alignment explanation
Indices: 90280847--90281142 Score: 486
Period size: 132 Copynumber: 2.2 Consensus size: 132
90280837 GCCATCTTTG
*
90280847 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
1 ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
* **
90280912 GGGGATTAAGACTCGTATCTTCAACCTACTCTCTTGCTATTTCAAAGAGATAAGGTCGGTGGCTA
66 GGGGATTAAAACTCGTATCTTCAACCTACTCTCTTGCTACCTCAAAGAGATAAGGTCGGTGGCTA
90280977 AA
131 AA
* *
90280979 ATCTGCTCCATAATCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTA
1 ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
* * *
90281044 TGGGG-TTAAAACTCGTATCTTCAACCTGCTCTCTTGCTACCTGAGAGAGATAAGGTCGGTGGCT
66 -GGGGATTAAAACTCGTATCTTCAACCTACTCTCTTGCTACCTCAAAGAGATAAGGTCGGTGGCT
90281108 AAA
130 AAA
*
90281111 ATCTGTTCCATAGTCGATACATGGAGATAAGA
1 ATCTGCTCCATAGTCGATACATGGAGATAAGA
90281143 CTTGCCATCT
Statistics
Matches: 152, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
132 148 0.97
133 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (132 bp):
ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
GGGGATTAAAACTCGTATCTTCAACCTACTCTCTTGCTACCTCAAAGAGATAAGGTCGGTGGCTA
AA
Found at i:90281123 original size:309 final size:308
Alignment explanation
Indices: 90280671--90281233 Score: 975
Period size: 309 Copynumber: 1.8 Consensus size: 308
90280661 GCCATCTTTG
*
90280671 ATCTGCTCTATAACCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTTCCCTAATACTTAG
1 ATCTGCTCCATAACCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTTCCCTAATACTTAG
* * *
90280736 GGGGTTAAGAGTCGTATCTTCAACCTGCTCTCTTGCTATCTCAGAGAGATAAGGTCGGTGGCTAA
66 GGGGTTAAAACTCGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTAA
90280801 AATCTTCTCCATAGCCGATACATAGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATA
131 AATCTTCTCCATAGCCGATACATAGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATA
*
90280866 CATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGATTAAGACTCGTATC
196 CATGGAGATAAGATCTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGGATTAAGACTCGTATC
90280931 TTCAACCTACTCTCTTGCTATTTCAAAGAGATAAGGTCGGTGGCTAAA
261 TTCAACCTACTCTCTTGCTATTTCAAAGAGATAAGGTCGGTGGCTAAA
* * *
90280979 ATCTGCTCCATAATCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTA
1 ATCTGCTCCATAACCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTT-CCCTAATACTTA
* *
90281044 TGGGGTTAAAACTCGTATCTTCAACCTGCTCTCTTGCTACCTGAGAGAGATAAGGTCGGTGGCTA
65 GGGGGTTAAAACTCGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTA
* * *
90281109 AAATCTGT-TCCATAGTCGATACATGGAGATAAGACTTGCCATCTTTGATCTGCTCCATAGCCGA
130 AAATCT-TCTCCATAGCCGATACATAGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGA
*
90281173 TACATGGAGATAAGATCTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAGACT
194 TACATGGAGATAAGATCTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGGATTAAGACT
90281234 TGTGGCTAAA
Statistics
Matches: 239, Mismatches: 14, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
308 50 0.21
309 188 0.79
310 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (308 bp):
ATCTGCTCCATAACCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTTCCCTAATACTTAG
GGGGTTAAAACTCGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTAA
AATCTTCTCCATAGCCGATACATAGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATA
CATGGAGATAAGATCTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGGATTAAGACTCGTATC
TTCAACCTACTCTCTTGCTATTTCAAAGAGATAAGGTCGGTGGCTAAA
Found at i:90281273 original size:309 final size:307
Alignment explanation
Indices: 90280618--90281327 Score: 949
Period size: 309 Copynumber: 2.3 Consensus size: 307
90280608 ACAAGGCTTC
* *** *
90280618 TGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATCTTTGATCTGCTCTATA
1 TGGCTAAAAT-TGCTCCATAG-CGATACATGGAGATAAGACTCGCCAGCTAAAATCTGCTCCATA
* *
90280683 ACCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTTCCCTAATACTTAGGGGGTTAAGAGT
64 ACCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTTCCCTAATACTTAGGGGGTTAAAACT
*
90280748 CGTATCTTCAACCTGCTCTCTTGCTATCTCAGAGAGATAAGGTCGGTGGCTAAAATCTTCTCCAT
129 CGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTAAAATCTTCTCCAT
90280813 AGCCGATACATAGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATACATGGAGATAAG
194 AGCCGATACATAGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATACATGGAGATAAG
*
90280878 ATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGATTAAGACTCG
259 ATCTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGGATTAAGACTCG
** * ** * * * * ** * ***
90280927 TATCTTCAACCTACTCTC-TTGCTATTTCAAAGAGATAAG-GTCGGTGGCTAAAATCTGCTCCAT
1 TGGC-TAAAATTGCTC-CATAGCGA-TACATGGAGATAAGACTCGCCAGCTAAAATCTGCTCCAT
* * * *
90280990 AATCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTATGGGGTTAAAA
63 AACCGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTT-CCCTAATACTTAGGGGGTTAAAA
*
90281055 CTCGTATCTTCAACCTGCTCTCTTGCTACCTGAGAGAGATAAGGTCGGTGGCTAAAATCTGT-TC
127 CTCGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTAAAATCT-TCTC
* * *
90281119 CATAGTCGATACATGGAGATAAGACTTGCCATCTTTGATCTGCTCCATAGCCGATACATGGAGAT
191 CATAGCCGATACATAGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATACATGGAGAT
* *
90281184 AAGATCTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAGACTTG
256 AAGATCTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGGATTAAGACTCG
** *** *
90281236 TGGCTAAAAATTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCTATA
1 TGGCT-AAAATTGCTCCATAG-CGATACATGGAGATAAGACTCGCCAGCTAAAATCTGCTCCATA
*
90281301 GCCGATACATGGAGATAAGATCTGTAA
64 ACCGATACATGGAGATAAGATCTGTAA
90281328 CTTTCAGTCT
Statistics
Matches: 335, Mismatches: 57, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
308 59 0.18
309 229 0.68
310 47 0.14
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (307 bp):
TGGCTAAAATTGCTCCATAGCGATACATGGAGATAAGACTCGCCAGCTAAAATCTGCTCCATAAC
CGATACATGGAGATAAGATCTGTAATTTTTAGCCTGTTCCCTAATACTTAGGGGGTTAAAACTCG
TATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTAAAATCTTCTCCATAG
CCGATACATAGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATACATGGAGATAAGAT
CTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGGATTAAGACTCG
Found at i:90281421 original size:134 final size:133
Alignment explanation
Indices: 90281102--90281482 Score: 523
Period size: 134 Copynumber: 2.9 Consensus size: 133
90281092 GATAAGGTCG
* * * *
90281102 GTGGCTAAAATCTGTTCCATAGTCGATACATGGAGATAAGACTTGCCATCTTTGATCTGCTCCAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCAT
* * * ** *
90281167 AGCCGATACATGGAGATAAGATCTGTAATTTTCAGCCTATTACCCTACTGCTTAGGGGGTTAAGA
66 AGCCGATACATGGAGATAAGATCTGTAACTTTCAGCCTATTACCCTACTCCTCAGGAAGATAAGA
90281232 CTT
131 CTT
*
90281235 GTGGCTAAAAAT-TGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCTA
1 GTGGCT-AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCA
* * *
90281299 TAGCCGATACATGGAGATAAGATCTGTAACTTTCAGTCTACTT-CCTTGCTACCTCAGGAAGATA
65 TAGCCGATACATGGAGATAAGATCTGTAACTTTCAGCCTA-TTACCCTACT-CCTCAGGAAGATA
90281363 AGACTT
128 AGACTT
* * * *
90281369 GTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACCCGTCATTTTTTATCTGCTCCAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCAT
* * * *
90281434 AGCCGATACATGGAGATAAGATCTGTAATTTTTAGCATGTTACCCTACT
66 AGCCGATACATGGAGATAAGATCTGTAACTTTCAGCCTATTACCCTACT
90281483 GCTTATGGGG
Statistics
Matches: 217, Mismatches: 26, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
133 103 0.47
134 114 0.53
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (133 bp):
GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCAT
AGCCGATACATGGAGATAAGATCTGTAACTTTCAGCCTATTACCCTACTCCTCAGGAAGATAAGA
CTT
Found at i:90281465 original size:45 final size:44
Alignment explanation
Indices: 90281110--90281467 Score: 156
Period size: 45 Copynumber: 8.0 Consensus size: 44
90281100 CGGTGGCTAA
* * ** *
90281110 AATCTGTTCCATAGTCGATACATGGAGATAAGACTTGCCATCTTT
1 AATCTGCTCCATAGCCGATACATGGAGATAAGAC-TGTAATTTTT
* *
90281155 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGA-CTGTAATTTTT
** ** * * * * * * * *** ***
90281200 AGCCTATTACCCTA-CTGCT-TAGGGGGTTAAGACTTGTGGCTAAA
1 AATCTGCT-CCATAGCCGATACATGGAGATAAGAC-TGTAATTTTT
**
90281244 AAT-TGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTT
1 AATCTGCTCCATAGCCGATACATGGAGATAAGACT-GTAATTTTT
* * * *
90281288 GATCTGCTCTATAGCCGATACATGGAGATAAGATCTGTAACTTTC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGA-CTGTAATTTTT
* * * * *** **
90281333 AGTCTACTTCC-TTG-C--TACCTCAGGAAGATAAGACTTGT-GGCTAA
1 AATCTGC-TCCATAGCCGATACAT--GG-AGATAAGAC-TGTAATTTTT
* * *
90281377 AATCTACTCCATAGCCGATACATGGAGATAAGACCCGTCATTTTT
1 AATCTGCTCCATAGCCGATACATGGAGATAAGA-CTGTAATTTTT
*
90281422 TATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTT
1 AATCTGCTCCATAGCCGATACATGGAGATAAGA-CTGTAATTTTT
90281467 A
1 A
90281468 GCATGTTACC
Statistics
Matches: 219, Mismatches: 75, Indels: 38
0.66 0.23 0.11
Matches are distributed among these distances:
42 8 0.04
43 10 0.05
44 51 0.23
45 137 0.63
46 9 0.04
47 4 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCATAGCCGATACATGGAGATAAGACTGTAATTTTT
Found at i:90281758 original size:64 final size:64
Alignment explanation
Indices: 90281657--90281784 Score: 193
Period size: 64 Copynumber: 2.0 Consensus size: 64
90281647 TCATGTATCT
* * * *
90281657 ATGCTTGTGCCAAGTAATTAGGATGCTATGATCGAAATGAATCATATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAAATAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
* * *
90281721 ATGCTTATGTCAAATAAATAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAAATAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
90281785 TTATTATATG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (64 bp):
ATGCTTATGCCAAATAAATAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:90292077 original size:22 final size:23
Alignment explanation
Indices: 90292047--90292102 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 23
90292037 TTAATCCATC
*
90292047 TATTTTTATTTGTTTGAAATTGG-
1 TATTTTTATTT-TTTCAAATTGGT
90292070 TA-TTTTA-TTTTTCAAATTGGT
1 TATTTTTATTTTTTCAAATTGGT
90292091 TATTTTTATTTT
1 TATTTTTATTTT
90292103 CAGTTTTAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 10 0.34
21 4 0.14
22 10 0.34
23 5 0.17
ACGTcount: A:0.21, C:0.02, G:0.11, T:0.66
Consensus pattern (23 bp):
TATTTTTATTTTTTCAAATTGGT
Found at i:90292088 original size:20 final size:22
Alignment explanation
Indices: 90292047--90292102 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
90292037 TTAATCCATC
*
90292047 TATTTTTATTTGTTTGAAATTGG-
1 TATTTTTA-TT-TTTCAAATTGGT
90292070 TA-TTTTATTTTTCAAATTGGT
1 TATTTTTATTTTTCAAATTGGT
90292091 TATTTTTATTTT
1 TATTTTTATTTT
90292103 CAGTTTTAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 10 0.33
21 4 0.13
22 14 0.47
23 2 0.07
ACGTcount: A:0.21, C:0.02, G:0.11, T:0.66
Consensus pattern (22 bp):
TATTTTTATTTTTCAAATTGGT
Found at i:90294577 original size:22 final size:22
Alignment explanation
Indices: 90294527--90294577 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
90294517 AGTTATAACA
*
90294527 TGTTAAATTATTTATTACTCTT
1 TGTTAAATTATTTATGACTCTT
** * *
90294549 TAATAAATTATTTATGAGTTTT
1 TGTTAAATTATTTATGACTCTT
90294571 TGTTAAA
1 TGTTAAA
90294578 AAAATATTTA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (22 bp):
TGTTAAATTATTTATGACTCTT
Found at i:90296339 original size:47 final size:47
Alignment explanation
Indices: 90296270--90296439 Score: 197
Period size: 47 Copynumber: 3.6 Consensus size: 47
90296260 CGCCCATAAG
* *
90296270 CGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTTA
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTAA
* *
90296317 CGAACTCGGACTCAACTCAACGAGTTTGG--G-C-A-TTCGCATCCATAA
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TAA
* * * *
90296362 GTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCA
1 -CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTAA
90296410 CGAACTCGGACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAACGAGTTCGGA
90296440 CGTTCGCATC
Statistics
Matches: 101, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 25 0.25
47 54 0.53
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (47 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTAA
Found at i:90296388 original size:46 final size:46
Alignment explanation
Indices: 90296318--90296482 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 46
90296308 TACATCTTAC
*
90296318 GAACTCGGACTCAACTCAACGAGTTTGGGCATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGT
* * * * *
90296364 GAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCATCCATAAGT
* *
90296411 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGT
*
90296457 GAACTTGGACTCAACTCAACGAGTTC
1 GAACTCGGACTCAACTCAACGAGTTC
90296483 AGATGCTCAA
Statistics
Matches: 96, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 50 0.52
47 26 0.27
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGT
Found at i:90296422 original size:93 final size:93
Alignment explanation
Indices: 90296263--90296488 Score: 371
Period size: 93 Copynumber: 2.4 Consensus size: 93
90296253 TGTAACCCGC
* *
90296263 CCATAAGCGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTTACGAACTCGGAC
1 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGAC
* *
90296328 TCAACTCAACGAGTTTGGGCATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
** *
90296356 CCATAAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGAC
*
90296421 TCAACTCAACGAGTTCGGACGTTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
*
90296449 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCAGATGC
1 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGC
90296489 TCAAATATCT
Statistics
Matches: 121, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 121 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGAC
TCAACTCAACGAGTTCGGACATTCGCAT
Found at i:90298146 original size:23 final size:23
Alignment explanation
Indices: 90298120--90298172 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
90298110 TTCAAAAAAC
90298120 TAAATAAAATTTA-AAAATCTATA
1 TAAATAAAATTTAGAAAAT-TATA
* *
90298143 TAAA-ATGAATTTAGAATATTATA
1 TAAATA-AAATTTAGAAAATTATA
90298166 TAAATAA
1 TAAATAA
90298173 TTGGAATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
22 1 0.04
23 18 0.75
24 5 0.21
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (23 bp):
TAAATAAAATTTAGAAAATTATA
Found at i:90301558 original size:31 final size:31
Alignment explanation
Indices: 90301511--90301589 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
90301501 TTTAACGATT
*
90301511 ACTGCGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
90301542 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
90301573 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
90301590 ACTATAAACG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:90301685 original size:42 final size:42
Alignment explanation
Indices: 90301617--90301704 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
90301607 CCATAGGCGA
* ** *
90301617 ATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
*
90301659 ATTTCAATATCACGTGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
90301701 ATTT
1 ATTT
90301705 GGGGAGACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
Found at i:90301894 original size:26 final size:26
Alignment explanation
Indices: 90301849--90301972 Score: 214
Period size: 26 Copynumber: 4.8 Consensus size: 26
90301839 CCTCTTTAAT
90301849 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
90301874 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
90301900 AACTGGGGCATAAACCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
90301926 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
90301952 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
90301973 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 10 0.11
26 82 0.89
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:90303570 original size:31 final size:31
Alignment explanation
Indices: 90303527--90303611 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
90303517 GTAGTGTGGC
90303527 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCAAAGCCTTTTCATAAAT
*
90303558 CATATCATTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCAAAGCCTTTTCATAAAT
* *
90303589 CATTTCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCAAAGCCTTT
90303612 ACTGTAAACG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCAAAGCCTTTTCATAAAT
Found at i:90303686 original size:42 final size:42
Alignment explanation
Indices: 90303639--90303726 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
90303629 CCATAGGCCA
* ** *
90303639 ATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
*
90303681 ATTTCAATATCACGTGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
90303723 ATTT
1 ATTT
90303727 GGGGAGACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
Found at i:90303916 original size:26 final size:26
Alignment explanation
Indices: 90303871--90303968 Score: 171
Period size: 26 Copynumber: 3.8 Consensus size: 26
90303861 CCTCTTTAAT
90303871 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
90303896 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
90303922 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
90303948 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
90303969 GCACTTCCTC
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
25 10 0.15
26 58 0.85
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:90304798 original size:27 final size:27
Alignment explanation
Indices: 90304718--90304798 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
90304708 GGGCATATTC
* * *
90304718 GTCATTTTACCATACAGGGG-TATTACA
1 GTCACTTTACCCTACAGGGGCT-TTACG
90304745 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
90304772 GTCAGTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
90304799 ATCTTTTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:90304976 original size:27 final size:28
Alignment explanation
Indices: 90304926--90305078 Score: 190
Period size: 27 Copynumber: 5.6 Consensus size: 28
90304916 AGAAAGTCAA
* * **
90304926 GGGTATTTTTGTAACTTTGTAAA-TAAG
1 GGGTATTTTGGTAATTTTACAAACTAAG
* *
90304953 GGGTATTTTGGTAATTTTACAAATTGA-
1 GGGTATTTTGGTAATTTTACAAACTAAG
* *
90304980 GGGTATTTTGGTAATTTCACAAACCAA-
1 GGGTATTTTGGTAATTTTACAAACTAAG
90305007 GGGTATTTTGGTAATTTTACAAACT-AG
1 GGGTATTTTGGTAATTTTACAAACTAAG
90305034 GGGTATTTTGGTAATTTTACAAACTAA-
1 GGGTATTTTGGTAATTTTACAAACTAAG
*
90305061 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
90305079 GTAAATCGAG
Statistics
Matches: 111, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 107 0.96
28 3 0.03
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (28 bp):
GGGTATTTTGGTAATTTTACAAACTAAG
Found at i:90305090 original size:27 final size:27
Alignment explanation
Indices: 90304871--90305146 Score: 173
Period size: 27 Copynumber: 10.1 Consensus size: 27
90304861 ACAAACCAAT
* * *
90304871 GGTATTTCAGTAATTTTGTAAATCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
90304898 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * *
90304927 GGTATTTTTGTAACTTTGTAAAT-AAGG
1 GGTATTTTAGTAATTTTATAAATCAA-G
* * **
90304954 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * * *
90304981 GGTATTTTGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
90305008 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* *
90305035 GGTATTTTGGTAATTTTACAAA-CTAAG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* *
90305062 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** * *
90305089 GGTAAAATAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
**** * *
90305116 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
90305143 GGTA
1 GGTA
90305147 AAACGGTAAT
Statistics
Matches: 209, Mismatches: 32, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
26 3 0.01
27 175 0.84
28 17 0.08
29 14 0.07
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:90305092 original size:81 final size:81
Alignment explanation
Indices: 90304923--90305077 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
90304913 TTTAGAAAGT
* ** * *
90304923 CAAGGGTATTTTTGTAACTTTGTAAATAAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTTGGTAACTTTACAAATAAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
*
90304988 TGGTAATTTCACAAAC
66 TAGTAATTTCACAAAC
*
90305004 CAAGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATT
1 CAAGGGTATTTTGGTAACTTTACAAA-TAAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATT
90305068 TTAGTAATTT
65 TTAGTAATTT
90305078 TGTAAATCGA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
81 65 0.98
82 1 0.02
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAACTTTACAAATAAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
TAGTAATTTCACAAAC
Found at i:90305102 original size:81 final size:81
Alignment explanation
Indices: 90304951--90305103 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
90304941 TTTGTAAATA
* * * ***
90304951 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTCACAAACCAAGGGTAAAAT
*
90305016 GGTAATTTTACAAACT
66 AGTAATTTTACAAACT
*** * *
90305032 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTCACAAACCAAGGGTAAAAT
90305097 AGTAATT
66 AGTAATT
90305104 CTGTAAATCA
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 60 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTCACAAACCAAGGGTAAAAT
AGTAATTTTACAAACT
Found at i:90305147 original size:27 final size:27
Alignment explanation
Indices: 90305071--90305389 Score: 397
Period size: 27 Copynumber: 11.8 Consensus size: 27
90305061 GGGTATTTTA
* **
90305071 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
90305098 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
90305125 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
90305152 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
90305179 GTAATTCTGTAAGTCAAGGGAAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
90305206 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
90305233 GTAATTATGTAAATTGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
90305260 GTAATTCTGTAAACCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
90305287 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
90305314 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
90305341 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
90305368 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
90305390 CTTTGGTAAT
Statistics
Matches: 256, Mismatches: 34, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 255 1.00
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:90305485 original size:28 final size:27
Alignment explanation
Indices: 90305413--90305487 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 27
90305403 ACAAGTCGAA
*
90305413 TCAGTAATTTTACAAA-TCGAGGGTATT
1 TCAGTAATTTTACAAACT-AAGGGTATT
*
90305440 TCAGTATTTTTACAAACTAAGGGTATT
1 TCAGTAATTTTACAAACTAAGGGTATT
* *
90305467 TCGGTAATTTTAGTAAACTAA
1 TCAGTAATTTTA-CAAACTAA
90305488 AGTATTCTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 33 0.80
28 8 0.20
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.39
Consensus pattern (27 bp):
TCAGTAATTTTACAAACTAAGGGTATT
Found at i:90308081 original size:48 final size:48
Alignment explanation
Indices: 90308010--90308105 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
90308000 CTATCTACAA
90308010 GACACATGTCTTCATTGATTTTGGGTCTATCGAAATTTTGTTGAATAT
1 GACACATGTCTTCATTGATTTTGGGTCTATCGAAATTTTGTTGAATAT
90308058 GACACATGTCTTCATTGATTTTGGGTCTATCGAAATTTTGTTGAATAT
1 GACACATGTCTTCATTGATTTTGGGTCTATCGAAATTTTGTTGAATAT
90308106 TCATATTTTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (48 bp):
GACACATGTCTTCATTGATTTTGGGTCTATCGAAATTTTGTTGAATAT
Found at i:90310677 original size:18 final size:18
Alignment explanation
Indices: 90310656--90310693 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
90310646 TGCTTTTCTC
90310656 AGGGCTCCCGCTTGGGCT
1 AGGGCTCCCGCTTGGGCT
*
90310674 AGGGCTCTCGCTTGGGCT
1 AGGGCTCCCGCTTGGGCT
90310692 AG
1 AG
90310694 CGCTGATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.29, G:0.39, T:0.24
Consensus pattern (18 bp):
AGGGCTCCCGCTTGGGCT
Found at i:90311587 original size:20 final size:20
Alignment explanation
Indices: 90311562--90311605 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
90311552 AACAAACAAA
90311562 CATATCTTGCAGTTGTTGGT
1 CATATCTTGCAGTTGTTGGT
90311582 CATATCTTGCAGTTGTTGGT
1 CATATCTTGCAGTTGTTGGT
90311602 CATA
1 CATA
90311606 CTTTTTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.18, C:0.16, G:0.23, T:0.43
Consensus pattern (20 bp):
CATATCTTGCAGTTGTTGGT
Found at i:90312260 original size:47 final size:48
Alignment explanation
Indices: 90312165--90312271 Score: 135
Period size: 47 Copynumber: 2.2 Consensus size: 48
90312155 AAGAATATCG
* * * ** **
90312165 TTACTTTTCGTAAGCCTTCCCTATGTGTTTGAGAGTAGGGTTATATTA
1 TTACTTTTCGTAAGCCTTCCCCATGCGTTTGAAAACAGGACTATATTA
*
90312213 TTTCTTTTCGTAAGCC-TCCCCATGCGTTTGAAAACAGGACTATATTA
1 TTACTTTTCGTAAGCCTTCCCCATGCGTTTGAAAACAGGACTATATTA
90312260 TTACTTTTCGTA
1 TTACTTTTCGTA
90312272 GGTCTTTCTA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
47 35 0.70
48 15 0.30
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (48 bp):
TTACTTTTCGTAAGCCTTCCCCATGCGTTTGAAAACAGGACTATATTA
Found at i:90314682 original size:17 final size:18
Alignment explanation
Indices: 90314660--90314698 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
90314650 TAGAGGAAGC
90314660 TCTCA-TTCTAAGGCTTG
1 TCTCATTTCTAAGGCTTG
*
90314677 TCTCATTTCTTAGGCTTG
1 TCTCATTTCTAAGGCTTG
90314695 TCTC
1 TCTC
90314699 GTTGCGTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.13, C:0.26, G:0.15, T:0.46
Consensus pattern (18 bp):
TCTCATTTCTAAGGCTTG
Done.