Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 284 of 325
Found at i:90998880 original size:157 final size:157
Alignment explanation
Indices: 90998594--90998903 Score: 444
Period size: 157 Copynumber: 2.0 Consensus size: 157
90998584 CATCCCCATG
90998594 CAGCCGAAACACAAGATCCGGTATAATTATCCATAATAATCCAAGGGCCTTCACGAGTGATATAC
1 CAGCCGAAACACAAGATCCGGTATAATTATCCATAATAATCCAAGGGCCTTCACGAGTGATATAC
** **
90998659 CTCCTGATGCAGAGCTTGCATGAGTTTTCTAAATATTTAGATATAGTGTCAACCCACCTATTGAA
66 CTCCTGATGCAGAGCTTGCACAAGTTTTCTAAATATCCAGATATAGTGTCAACCCACCTATTGAA
*
90998724 TGAAGAATCAGAAGTTGAAGAGTCATT
131 TGAAGAATCAGAAGATGAAGAGTCATT
* * * * *
90998751 CAGCCTAAACACAGGATCTGGTATAGTTATCCATAATAATCC-AGAGGCCTTCATGAGTGATATA
1 CAGCCGAAACACAAGATCCGGTATAATTATCCATAATAATCCAAG-GGCCTTCACGAGTGATATA
* * * **
90998815 CCTCCTGATGCAGCA-CTTGCACAAGTTTTTTGAATATCCAGATATAGTGTCAGCTTACCTATTG
65 CCTCCTGATGCAG-AGCTTGCACAAGTTTTCTAAATATCCAGATATAGTGTCAACCCACCTATTG
*
90998879 AATGAAGAATCGGAAGATGAAGAGT
129 AATGAAGAATCAGAAGATGAAGAGT
90998904 TGTTCGTAGG
Statistics
Matches: 135, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
156 2 0.01
157 132 0.98
158 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (157 bp):
CAGCCGAAACACAAGATCCGGTATAATTATCCATAATAATCCAAGGGCCTTCACGAGTGATATAC
CTCCTGATGCAGAGCTTGCACAAGTTTTCTAAATATCCAGATATAGTGTCAACCCACCTATTGAA
TGAAGAATCAGAAGATGAAGAGTCATT
Found at i:91001175 original size:89 final size:89
Alignment explanation
Indices: 91001082--91001249 Score: 241
Period size: 89 Copynumber: 1.9 Consensus size: 89
91001072 AATTAAAAAA
91001082 TAAAAATTAAATACA-TAAAGTTTAACTTAATAATTAAAGTA-TAAACTAAAAATGAATTGAATT
1 TAAAAATTAAATA-ATTAAAGTTTAACTTAATAATTAAA-TATTAAACTAAAAATGAATTGAATT
91001145 TCTTAATTTTAATTAAAAAATCAATT
64 TCTTAATTTTAATTAAAAAATCAATT
* * * * *
91001171 TAAAAATTAAATAATTAAATTTTAACTTAATAATTATATATTAAATTAAAAGTTAATTGAATTTC
1 TAAAAATTAAATAATTAAAGTTTAACTTAATAATTAAATATTAAACTAAAAATGAATTGAATTTC
* *
91001236 TTATTTTTACTTAA
66 TTAATTTTAATTAA
91001250 TTGAAATAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
88 3 0.04
89 67 0.96
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.42
Consensus pattern (89 bp):
TAAAAATTAAATAATTAAAGTTTAACTTAATAATTAAATATTAAACTAAAAATGAATTGAATTTC
TTAATTTTAATTAAAAAATCAATT
Found at i:91001214 original size:19 final size:19
Alignment explanation
Indices: 91001174--91001219 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
91001164 ATCAATTTAA
*
91001174 AAATTAAATAATTAAATTTT
1 AAATT-AATAATTAAATATT
* *
91001194 AACTTAATAATTATATATT
1 AAATTAATAATTAAATATT
91001213 AAATTAA
1 AAATTAA
91001220 AAGTTAATTG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
AAATTAATAATTAAATATT
Found at i:91001226 original size:26 final size:27
Alignment explanation
Indices: 91001170--91001227 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 27
91001160 AAAAATCAAT
* **
91001170 TTAAAAATTAAATAATTAAATTTTAAC
1 TTAATAATTAAATAATTAAATTAAAAC
* *
91001197 TTAATAATTATAT-ATTAAATTAAAAG
1 TTAATAATTAAATAATTAAATTAAAAC
91001223 TTAAT
1 TTAAT
91001228 TGAATTTCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (27 bp):
TTAATAATTAAATAATTAAATTAAAAC
Found at i:91009529 original size:56 final size:57
Alignment explanation
Indices: 91009412--91009548 Score: 156
Period size: 56 Copynumber: 2.4 Consensus size: 57
91009402 GGGGTGCCAA
* * * * *
91009412 CCATCAATGTCCCAACACCCCTCAATTTTTGTTTTTCAAATATGGTCCAAGGGTGTTGG
1 CCATCAATGTCCCAACA--CCTCAATTTTTGTTTCTCAAATACGGTACAAGGATGTCGG
91009471 CCATCAATGTCCCAACACCT-AATTTTT-TTTCCTCAAAT-CGAGTACAAGGATGTCGG
1 CCATCAATGTCCCAACACCTCAATTTTTGTTT-CTCAAATACG-GTACAAGGATGTCGG
*
91009527 CCATCAGTGTCCCAACA-CTCAA
1 CCATCAATGTCCCAACACCTCAA
91009549 AAAAATTTTC
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
55 6 0.09
56 43 0.62
57 3 0.04
59 17 0.25
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (57 bp):
CCATCAATGTCCCAACACCTCAATTTTTGTTTCTCAAATACGGTACAAGGATGTCGG
Found at i:91013964 original size:31 final size:31
Alignment explanation
Indices: 91013929--91013990 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
91013919 CTTTTTACCT
* *
91013929 CTGAACTTGGCAAATAGGTCCATATTGGCCC
1 CTGAACTTGGCAAATAAGTCCATATTAGCCC
*
91013960 CTGAACTTGGCAAGTAAGTCCATATTAGCCC
1 CTGAACTTGGCAAATAAGTCCATATTAGCCC
91013991 TTAAATTTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (31 bp):
CTGAACTTGGCAAATAAGTCCATATTAGCCC
Found at i:91015602 original size:7 final size:7
Alignment explanation
Indices: 91015592--91015617 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
91015582 TATTTGAAAT
91015592 TTTAAAA
1 TTTAAAA
91015599 TTTAAAA
1 TTTAAAA
91015606 TTTAAAA
1 TTTAAAA
91015613 TTTAA
1 TTTAA
91015618 CCTTTATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TTTAAAA
Found at i:91022824 original size:38 final size:37
Alignment explanation
Indices: 91022774--91022957 Score: 140
Period size: 38 Copynumber: 4.7 Consensus size: 37
91022764 ATAGTATTAT
*
91022774 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
91022811 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * * *
91022851 ATATTTAATAATAATTATTTTAAATTATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
*
91022893 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
91022931 ATATTAAGAATTTTATTAAATTATATA
1 ATATTAAGAATTTTATTAAATTATATA
91022958 TTTTTATTAA
Statistics
Matches: 115, Mismatches: 18, Indels: 28
0.71 0.11 0.17
Matches are distributed among these distances:
37 28 0.24
38 37 0.32
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.03
43 8 0.07
44 13 0.11
45 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Found at i:91022842 original size:18 final size:18
Alignment explanation
Indices: 91022821--91022992 Score: 112
Period size: 18 Copynumber: 9.9 Consensus size: 18
91022811 ATATTAAGAA
91022821 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
91022839 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
91022854 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
91022869 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
91022888 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
91022903 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** * *
91022922 GAATATTTAATATTA-AGAA
1 TTTTA-TTAA-ATTATATAT
91022941 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
91022959 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
91022977 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
91022993 TTAATAATAA
Statistics
Matches: 118, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
13 2 0.02
14 7 0.06
15 5 0.04
16 12 0.10
17 17 0.14
18 56 0.47
19 11 0.09
20 5 0.04
21 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:91022844 original size:56 final size:55
Alignment explanation
Indices: 91022783--91022975 Score: 210
Period size: 56 Copynumber: 3.3 Consensus size: 55
91022773 TATATTATGA
91022783 TTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
1 TTTTATTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
* * * * *
91022839 TTTTATTAAATTATATTTAATAATAATT-ATTTTAA-ATTATATTATATAGTATTATATATTAT
1 TTTTATTAAATTATA--TAAGAATATTTAATATTAAGA--ATTTTAT-TA--AAT-TATA-TAT
91022901 GATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
1 --TTTTATTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
91022959 TTTTATTAAATTATATA
1 TTTTATTAAATTATATA
91022976 TTTTTATTAA
Statistics
Matches: 113, Mismatches: 10, Indels: 29
0.74 0.07 0.19
Matches are distributed among these distances:
55 9 0.08
56 30 0.27
57 15 0.13
58 5 0.04
59 4 0.04
60 4 0.04
61 4 0.04
62 5 0.04
63 15 0.13
64 18 0.16
65 4 0.04
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (55 bp):
TTTTATTAAATTATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
Found at i:91022895 original size:120 final size:122
Alignment explanation
Indices: 91022756--91023254 Score: 639
Period size: 120 Copynumber: 4.0 Consensus size: 122
91022746 ATTATTAATC
91022756 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
91022821 TTTTATTAAATTATATATTTTTATTA-AATTATATTTAATAATAATTAT-TTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAATTATATTTAATAATAATTATATTTAAAT
91022876 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
* *
91022941 TTTTATTAAATTATATATTTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTA
66 TTTTATTAAATTATATA---TT-TT-AATTATA-A---TTA-T--ATT-TA-ATAATAATTA-TA
91023006 TGTTAAAT
116 T-TTAAAT
* * * * * * *
91023014 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
* * *
91023079 TATTATTAAATTATATATTTTAATTATAA-TATATTTAATAATAATTAT-GTTAATT
66 TTTTATTAAATTATATATTTTAATTATAATTATATTTAATAATAATTATATTTAAAT
* * * * * *
91023134 TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
91023199 TTTTATTAAATTATATATTTTAATTATAA-TATATTTAATAATAATTATGTTTAAAT
66 TTTTATTAAATTATATATTTTAATTATAATTATATTTAATAATAATTATATTTAAAT
91023255 GTGATTAAAT
Statistics
Matches: 341, Mismatches: 19, Indels: 37
0.86 0.05 0.09
Matches are distributed among these distances:
120 198 0.58
121 5 0.01
122 1 0.00
123 10 0.03
124 4 0.01
125 7 0.02
126 1 0.00
127 2 0.01
128 2 0.01
130 3 0.01
131 1 0.00
132 1 0.00
133 10 0.03
134 4 0.01
135 10 0.03
136 1 0.00
137 1 0.00
138 80 0.23
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (122 bp):
TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTAATTATAATTATATTTAATAATAATTATATTTAAAT
Found at i:91022957 original size:61 final size:61
Alignment explanation
Indices: 91022769--91022959 Score: 230
Period size: 61 Copynumber: 3.2 Consensus size: 61
91022759 ATTATATAGT
91022769 ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
* * ** * * * * * *
91022830 ATTATATATTTTTATTAAATTATATTTA-ATAATAATTATTTTAA-ATT-A-TATTATA-TAGT
1 ATTATATATTATGATTTTATTAAATTCATATAAGAA-TA-TTTAATATTAAGAATTTTATTA-A
91022889 ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
91022950 ATTATATATT
1 ATTATATATT
91022960 TTTATTAAAT
Statistics
Matches: 102, Mismatches: 20, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
58 7 0.07
59 32 0.31
60 14 0.14
61 42 0.41
62 7 0.07
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (61 bp):
ATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
Found at i:91022967 original size:138 final size:137
Alignment explanation
Indices: 91022821--91023232 Score: 554
Period size: 138 Copynumber: 3.1 Consensus size: 137
91022811 ATATTAAGAA
*
91022821 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTATAT
1 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTA-TTTAAATTATATTTTAT
* * * * *
91022886 AGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAA
65 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAA
91022951 TTATATAT
130 TTATATAT
91022959 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTAT
1 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTAT-TTAAATTATATTTTAT
* *
91023024 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATATTATTAAA
65 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAA
91023089 TTATATA-
130 TTATATAT
* * * *
91023096 --TT-TT-AATTATA-A----TA-T--ATT-TA-ATAATAATTA-TG-TTAATTTATATTTTATA
1 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTATA
91023145 GTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
66 GTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
91023210 TATATAT
131 TATATAT
*
91023217 TTTAATTATAA-TATAT
1 TTTTATTA-AATTATAT
91023233 TTAATAATAA
Statistics
Matches: 251, Mismatches: 15, Indels: 28
0.85 0.05 0.10
Matches are distributed among these distances:
120 85 0.34
122 1 0.00
123 9 0.04
124 4 0.02
125 7 0.03
126 2 0.01
127 1 0.00
128 2 0.01
132 1 0.00
133 7 0.03
134 2 0.01
135 2 0.01
137 1 0.00
138 127 0.51
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (137 bp):
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTATA
GTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
TATATAT
Found at i:91023095 original size:61 final size:61
Alignment explanation
Indices: 91023030--91023217 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
91023020 TTATAGTATC
*
91023030 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATATTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATTTTATTAAATT
* * * * * * * * *
91023091 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTAT-ATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAATAATTTTATTA-AATT
*
91023150 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATTTTATTAAATT
91023211 ATATATT
1 ATATATT
91023218 TTAATTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 28 0.29
60 27 0.28
61 36 0.37
62 3 0.03
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATTTTATTAAATT
Found at i:91023096 original size:15 final size:13
Alignment explanation
Indices: 91023087--91023142 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 13
91023077 AATATTATTA
91023087 AATTATATATTTT
1 AATTATATATTTT
91023100 AATTATAATATATTT
1 AATTAT-ATAT-TTT
* *
91023115 AATAATAATTATGTT
1 AATTAT-A-TATTTT
91023130 AATT-TATATTTT
1 AATTATATATTTT
91023142 A
1 A
91023143 TAGTATCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
12 6 0.17
13 7 0.19
14 5 0.14
15 15 0.42
16 3 0.08
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (13 bp):
AATTATATATTTT
Found at i:91023112 original size:16 final size:16
Alignment explanation
Indices: 91023091--91023133 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
91023081 TTATTAAATT
91023091 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
91023107 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
91023122 AT-TATGTTAATT
1 ATATATTTTAATT
91023134 TATATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 16 0.70
16 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:91023232 original size:16 final size:16
Alignment explanation
Indices: 91023211--91023252 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
91023201 TTATTAAATT
*
91023211 ATATATTTTAATTATA
1 ATATATTTTAATAATA
91023227 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
91023242 AT-TATGTTTAA
1 ATATAT-TTTAA
91023253 ATGTGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:91023237 original size:15 final size:15
Alignment explanation
Indices: 91023202--91023243 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
91023192 TTAAGAATTT
*
91023202 TATTAAATTAT-ATA
1 TATTTAATTATAATA
91023216 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
91023230 TATTTAATAATAAT
1 TATTTAATTATAAT
91023244 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:91023490 original size:16 final size:16
Alignment explanation
Indices: 91023469--91023520 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
91023459 GATTTGCTAT
91023469 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
91023485 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
91023501 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
91023517 TACA
1 TACA
91023521 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:91036937 original size:21 final size:21
Alignment explanation
Indices: 91036913--91036969 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
91036903 TTTCCATCTT
*
91036913 CAACAACTTCTTCTTCTTCAG
1 CAACAACTTCTTCTTCTGCAG
91036934 CAACAACTT-TCTCTTCTGCAG
1 CAACAACTTCT-TCTTCTGCAG
*
91036955 CAGCAACTTTCTTCT
1 CAACAAC-TTCTTCT
91036970 CAACAACAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 1 0.03
21 24 0.77
22 5 0.16
23 1 0.03
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.37
Consensus pattern (21 bp):
CAACAACTTCTTCTTCTGCAG
Found at i:91038557 original size:25 final size:25
Alignment explanation
Indices: 91038548--91038639 Score: 157
Period size: 25 Copynumber: 3.7 Consensus size: 25
91038538 AGCTGAATAA
*
91038548 CGAGAAGCTCGTGCGAGTTGAGTAT
1 CGAGAAGCTCATGCGAGTTGAGTAT
91038573 CGAGAAGCTCATGCGAGTTGAGTAT
1 CGAGAAGCTCATGCGAGTTGAGTAT
*
91038598 CGAGAAGCTCAAGCGAGTTGAGTAT
1 CGAGAAGCTCATGCGAGTTGAGTAT
*
91038623 CGAGAAGCTCATTCGAG
1 CGAGAAGCTCATGCGAG
91038640 CTGTTGTGTG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.22
Consensus pattern (25 bp):
CGAGAAGCTCATGCGAGTTGAGTAT
Found at i:91041604 original size:42 final size:42
Alignment explanation
Indices: 91041543--91041670 Score: 141
Period size: 42 Copynumber: 3.0 Consensus size: 42
91041533 CTTCGTTTTC
*** *
91041543 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAACCCAACTATGGTCTTACACATATTCACAT-A
*
91041586 T-GATGCCATAACCCAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAACCCAACTATGGTCTTACACATATTCACATA
* * * * * *
91041627 TCGATGCCATAGCCCAGCTAGGGTATTACACGTAATCACATA
1 TCGATGCCATAACCCAACTATGGTCTTACACATATTCACATA
91041669 TC
1 TC
91041671 ACACATCAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
41 2 0.03
42 69 0.96
43 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAACCCAACTATGGTCTTACACATATTCACATA
Found at i:91041898 original size:31 final size:31
Alignment explanation
Indices: 91041818--91041904 Score: 131
Period size: 31 Copynumber: 2.8 Consensus size: 31
91041808 CTTGTCACTT
* * *
91041818 GTAGCCGAAGCTACCACTATTAACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
91041849 GTAGCCGGTA-CTACCACTTTTCACTGATCAG
1 GTAGCCGG-AGCTACCACTTTTCACTGATCAG
91041880 GTAGCCGGAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
91041905 TGTCATTTGT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
30 1 0.02
31 49 0.96
32 1 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:91047787 original size:17 final size:17
Alignment explanation
Indices: 91047765--91047803 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
91047755 GCATACGAGT
91047765 TTACTAAGCTATATAGC
1 TTACTAAGCTATATAGC
91047782 TTACTAAGCTATATAGC
1 TTACTAAGCTATATAGC
91047799 TTACT
1 TTACT
91047804 CCGTTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38
Consensus pattern (17 bp):
TTACTAAGCTATATAGC
Found at i:91049366 original size:19 final size:19
Alignment explanation
Indices: 91049342--91049381 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
91049332 AGCTCCCATG
91049342 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
91049361 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
91049380 TA
1 TA
91049382 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:91056153 original size:32 final size:35
Alignment explanation
Indices: 91056117--91056180 Score: 98
Period size: 32 Copynumber: 1.9 Consensus size: 35
91056107 TGTTATCATA
91056117 GATCTTGCAAACA-A-AT-AACATAAAATATAGTT
1 GATCTTGCAAACATATATAAACATAAAATATAGTT
*
91056149 GATCTTGCAAACATATATAAACATATAATATA
1 GATCTTGCAAACATATATAAACATAAAATATA
91056181 TTTAACTAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.46
33 1 0.04
34 2 0.07
35 12 0.43
ACGTcount: A:0.50, C:0.12, G:0.08, T:0.30
Consensus pattern (35 bp):
GATCTTGCAAACATATATAAACATAAAATATAGTT
Found at i:91056342 original size:60 final size:60
Alignment explanation
Indices: 91056246--91056369 Score: 203
Period size: 60 Copynumber: 2.1 Consensus size: 60
91056236 TAAATTAATA
* *
91056246 GTCACCTAACTATTAGTAAATTTCTTTTTCGATCACCCAGCTATGAAAAGTTACAAAATG
1 GTCACCCAACTATTAGTAAATTTCTTTTTCGATCACCCAACTATGAAAAGTTACAAAATG
* * *
91056306 GTCACCCAACTATTAGTAAATTTCTTTTTTGGTCACCCAACTATGAAAAGTTTCAAAATG
1 GTCACCCAACTATTAGTAAATTTCTTTTTCGATCACCCAACTATGAAAAGTTACAAAATG
91056366 GTCA
1 GTCA
91056370 TCTAACCTCT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (60 bp):
GTCACCCAACTATTAGTAAATTTCTTTTTCGATCACCCAACTATGAAAAGTTACAAAATG
Found at i:91061890 original size:24 final size:24
Alignment explanation
Indices: 91061863--91061908 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
91061853 AGTTATGGCT
91061863 TTTTTTAATATT-TTAATATTTTTC
1 TTTTTTAATATTATTAA-ATTTTTC
*
91061887 TTTTTTAATGTTATTAAATTTT
1 TTTTTTAATATTATTAAATTTT
91061909 GGAAGGTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (24 bp):
TTTTTTAATATTATTAAATTTTTC
Found at i:91069172 original size:50 final size:51
Alignment explanation
Indices: 91069090--91069218 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
91069080 GACCATGGCA
* *
91069090 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAGTG
1 ACAAGTAATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
* *
91069141 A-AAGTAATAAGTGATAGCTTTGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTAATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
*
91069191 ACAAGTGAA-AAGTGGTAGCTTCGGCTAC
1 ACAAGT-AATAAGTGATAGCTTCGGCTAC
91069219 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 46 0.66
51 22 0.31
52 2 0.03
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTAATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
Found at i:91069232 original size:31 final size:31
Alignment explanation
Indices: 91069194--91069342 Score: 244
Period size: 31 Copynumber: 4.8 Consensus size: 31
91069184 ACAAATGACA
91069194 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
91069225 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
91069256 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
91069287 AGTGAAAAATGGTAGCTCCGGCTACCTGTTC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
91069318 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
91069343 AAGTGACAAG
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 110 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:91069430 original size:47 final size:47
Alignment explanation
Indices: 91069361--91069482 Score: 167
Period size: 47 Copynumber: 2.6 Consensus size: 47
91069351 AGTGATTTCC
* *
91069361 GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACT
* * *
91069408 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACT
* *
91069455 G--TAAGACCATAGCTGGGCTATGGCATCG
1 GTATAAGACCATATCTGGGATATGGCATCG
91069483 ATATATGAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 24 0.36
47 43 0.64
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (47 bp):
GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACT
Found at i:91069502 original size:42 final size:43
Alignment explanation
Indices: 91069454--91069567 Score: 160
Period size: 42 Copynumber: 2.7 Consensus size: 43
91069444 TATGTGATTC
*
91069454 TGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
* *
91069496 TGTAAGACTATAGCTGGGCTATGGCATC-ATTATGTGAAGATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
* **
91069538 TGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTAAGACCATAGCTGGGCTATGGCATCGA
91069568 GAAAACGAAG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
41 1 0.02
42 61 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
Found at i:91070734 original size:21 final size:21
Alignment explanation
Indices: 91070701--91070764 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 21
91070691 AAAATCCCTT
*
91070701 TATTTTAATATTAAATTAAATA
1 TATTTTGA-ATTAAATTAAATA
91070723 TATTTTGAATTAATTTATATAAATA
1 TATTTTGAATTAA---AT-TAAATA
91070748 TATTTTGAATTAAATTA
1 TATTTTGAATTAAATTA
91070765 TACACACTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
21 7 0.19
22 9 0.24
24 2 0.05
25 19 0.51
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (21 bp):
TATTTTGAATTAAATTAAATA
Found at i:91070747 original size:25 final size:25
Alignment explanation
Indices: 91070717--91070766 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
91070707 AATATTAAAT
*
91070717 TAAATATATTTTGAATTAATTTATA
1 TAAATATATTTTGAATTAAATTATA
91070742 TAAATATATTTTGAATTAAATTATA
1 TAAATATATTTTGAATTAAATTATA
91070767 CACACTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
TAAATATATTTTGAATTAAATTATA
Found at i:91092632 original size:25 final size:25
Alignment explanation
Indices: 91092604--91092681 Score: 99
Period size: 25 Copynumber: 3.2 Consensus size: 25
91092594 ACCTTAGCGC
* **
91092604 GCTCTCTGATTATTAGCATGTTAGT
1 GCTCTCCGATTATTAGCACATTAGT
91092629 GCTCTCCGATTATTAGCACATTAGT
1 GCTCTCCGATTATTAGCACATTAGT
*
91092654 GCTCTCCG--T-TTAGCACATTTGT
1 GCTCTCCGATTATTAGCACATTAGT
91092676 GCTCTC
1 GCTCTC
91092682 TGTATAGCAC
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
22 18 0.37
23 1 0.02
25 30 0.61
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (25 bp):
GCTCTCCGATTATTAGCACATTAGT
Found at i:91092669 original size:22 final size:22
Alignment explanation
Indices: 91092624--91092700 Score: 91
Period size: 22 Copynumber: 3.4 Consensus size: 22
91092614 TATTAGCATG
91092624 TTAGTGCTCTCCGATTATTAGCACA
1 TTAGTGCTCTCCG--T-TTAGCACA
91092649 TTAGTGCTCTCCGTTTAGCACA
1 TTAGTGCTCTCCGTTTAGCACA
* * * *
91092671 TTTGTGCTCTCTGTATAGCACT
1 TTAGTGCTCTCCGTTTAGCACA
91092693 TTAGTGCT
1 TTAGTGCT
91092701 TTCTGTTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
22 33 0.70
23 1 0.02
25 13 0.28
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.40
Consensus pattern (22 bp):
TTAGTGCTCTCCGTTTAGCACA
Found at i:91100781 original size:25 final size:25
Alignment explanation
Indices: 91100743--91100792 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
91100733 TTTAAGAAAC
*
91100743 CGTTCAAGATTTTAGAAAAATCTTA
1 CGTTCAAGACTTTAGAAAAATCTTA
91100768 CGTTCAAGACTTTAGAAAAATCTTA
1 CGTTCAAGACTTTAGAAAAATCTTA
91100793 GTTTTAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (25 bp):
CGTTCAAGACTTTAGAAAAATCTTA
Found at i:91102878 original size:19 final size:18
Alignment explanation
Indices: 91102854--91102891 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
91102844 ATGTTTTAAT
91102854 TAAATAAATATAAAATTTA
1 TAAATAAATA-AAAATTTA
*
91102873 TAAATAAATAAAATTTTA
1 TAAATAAATAAAAATTTA
91102891 T
1 T
91102892 TTTAAATATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAATAAATAAAAATTTA
Found at i:91103233 original size:22 final size:20
Alignment explanation
Indices: 91103197--91103253 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 20
91103187 ATCAGCAATT
* *
91103197 TTTTTCATTAATATTTTTATGG
1 TTTTT-ATTATTATTTTTAT-A
91103219 TTATTTATTATTA-TTTTATA
1 TT-TTTATTATTATTTTTATA
91103239 TTTTTATTATTATTT
1 TTTTTATTATTATTT
91103254 AATTTTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 10 0.32
20 4 0.13
21 6 0.19
22 8 0.26
23 3 0.10
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.70
Consensus pattern (20 bp):
TTTTTATTATTATTTTTATA
Found at i:91103260 original size:16 final size:18
Alignment explanation
Indices: 91103222--91103259 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
91103212 TTTATGGTTA
91103222 TTTATTATTATTTTATATT
1 TTTATTATTA-TTTATATT
91103241 TTTATTATTATTTA-ATT
1 TTTATTATTATTTATATT
91103258 TT
1 TT
91103260 AATAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
19 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTATTATTTATATT
Found at i:91104619 original size:14 final size:14
Alignment explanation
Indices: 91104600--91104626 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91104590 TAATATTTCT
91104600 AAATAAATCATCTC
1 AAATAAATCATCTC
91104614 AAATAAATCATCT
1 AAATAAATCATCT
91104627 TTACTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.30
Consensus pattern (14 bp):
AAATAAATCATCTC
Found at i:91106104 original size:26 final size:26
Alignment explanation
Indices: 91106075--91106125 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
91106065 TTGCAGTGGC
* * *
91106075 TGATTTGATCAATTCATTCTATTAAT
1 TGATTTGACCAACTAATTCTATTAAT
91106101 TGATTTGACCAACTAATTCTATTAA
1 TGATTTGACCAACTAATTCTATTAA
91106126 CTGTTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (26 bp):
TGATTTGACCAACTAATTCTATTAAT
Found at i:91110487 original size:20 final size:20
Alignment explanation
Indices: 91110462--91110501 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
91110452 TCGCTTATTC
91110462 ATACAACACACCTCTCATTT
1 ATACAACACACCTCTCATTT
91110482 ATACAACACACCTCTCATTT
1 ATACAACACACCTCTCATTT
91110502 CCACACATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.30
Consensus pattern (20 bp):
ATACAACACACCTCTCATTT
Found at i:91113736 original size:22 final size:22
Alignment explanation
Indices: 91113694--91113737 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
91113684 GCAACTACTT
*
91113694 TAATTGCATTATTTAAGTATTA
1 TAATTGCATTATTCAAGTATTA
*
91113716 TAATT-CATTAATTCAATTATTA
1 TAATTGCATT-ATTCAAGTATTA
91113738 ACTTAGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.50
Consensus pattern (22 bp):
TAATTGCATTATTCAAGTATTA
Found at i:91114586 original size:2 final size:2
Alignment explanation
Indices: 91114579--91114608 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
91114569 ATTTGGAGGA
91114579 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91114609 TATGATATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91116970 original size:14 final size:15
Alignment explanation
Indices: 91116942--91116970 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91116932 TACATATTAA
91116942 TAAAATTTATTAAAT
1 TAAAATTTATTAAAT
91116957 TAAAATTT-TTAAAT
1 TAAAATTTATTAAAT
91116971 ATACTAAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TAAAATTTATTAAAT
Found at i:91120847 original size:328 final size:324
Alignment explanation
Indices: 91120246--91120902 Score: 791
Period size: 328 Copynumber: 2.0 Consensus size: 324
91120236 TGGAGGAACA
* * * *
91120246 TCCTATAGCTGACATCTCGAGTTCATCGACTGGCGATGAAACCATGAAAGAAAGCATAGAGGAAA
1 TCCTATAGCTGACATCTCGAGCTCATCGACTAGCGATGAAACCATGAAAGAAAGCAAAAAGGAAA
* * * *
91120311 ATGAAAGCATCCCATTGAAGTTAACAGAAAATGTCAGCTAATACAAATGAAAATTGAGCCCAAAA
66 ATCAAAGCACCCCATTGAAGGTAACAGAAAAGGTCAGCTAATACAAATGAAAATTGAGCCCAAAA
* * * * *
91120376 ATTTGTTAATTTTTTTTTTTACCATTGTTAGTTGCTAACTTAAACATTCAATGATTTACAGGCAA
131 A-TTG---ATGTTCTTTTTGACCATTGTTAGCTGCTAACTTAAACATCCAATGATTTACAGGCAA
* *
91120441 GCCCTTCATTAGAAATTGAAGACTCAAAAAAGGATACTGAAGAGAGAACCTTAGTAGAAGGAAGT
192 GCCCTTCATTAGAAATTGAAGACTCAAAAAAGGATACTGAAGAGAAAACCTTAGTAGAAGAAAGT
* *
91120506 ATTGATACTGCTGACCGGGAATCAGCACCGGCTGCAGCAAAACCAGAAGAGACAAAGCTAAAGGA
257 ATCGATACTGCTGACAGGGAATCAGCACCGGCTGCAGCAAAACCAGAAGAGACAAAGCTAAAGGA
91120571 AGC
322 AGC
* * * ** *
91120574 TCCTATATCTGACATCTCGAGCTCAAT-GATTAGTGATGAAACTTTGAAGGAAAGCAAAAAGGAA
1 TCCTATAGCTGACATCTCGAGCTC-ATCGACTAGCGATGAAACCATGAAAGAAAGCAAAAAGGAA
* * * *
91120638 GATCAAAGCACCCCATTGAAGGTAACAGAAAAGGTCAGCTAATATAAATGAAAGTTGATTTGGGT
65 AATCAAAGCACCCCATTGAAGGTAACAGAAAAGGTCAGCTAATACAAATGAAA----A-TTGAGC
** **
91120703 CCAAAAA-TG-TGTTCTTTTTGACCATTGTTAGCTGCTAACTTGCACATCCAATCTTTTTACAGG
125 CCAAAAATTGATGTTCTTTTTGACCATTGTTAGCTGCTAACTTAAACATCCAAT-GATTTACAGG
* ** * * *
91120766 CAAGCTCTTCATCT-GAGCTTGAGGACTCAAACAAGGATGCTGAAGAGAAAACCTTAGTAGAAGA
189 CAAGCCCTTCAT-TAGAAATTGAAGACTCAAAAAAGGATACTGAAGAGAAAACCTTAGTAGAAGA
* * ***
91120830 AAGTATCGATGCTGCTGACAGGGAATCTGCACCGGCTGCAGTGGAACCAGAAGAGACAAAGCTAA
253 AAGTATCGATACTGCTGACAGGGAATCAGCACCGGCTGCAGCAAAACCAGAAGAGACAAAGCTAA
*
91120895 AGGCAGC
318 AGGAAGC
91120902 T
1 T
91120903 GAAGCAGACG
Statistics
Matches: 278, Mismatches: 43, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
327 36 0.13
328 225 0.81
329 3 0.01
331 2 0.01
332 1 0.00
333 11 0.04
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (324 bp):
TCCTATAGCTGACATCTCGAGCTCATCGACTAGCGATGAAACCATGAAAGAAAGCAAAAAGGAAA
ATCAAAGCACCCCATTGAAGGTAACAGAAAAGGTCAGCTAATACAAATGAAAATTGAGCCCAAAA
ATTGATGTTCTTTTTGACCATTGTTAGCTGCTAACTTAAACATCCAATGATTTACAGGCAAGCCC
TTCATTAGAAATTGAAGACTCAAAAAAGGATACTGAAGAGAAAACCTTAGTAGAAGAAAGTATCG
ATACTGCTGACAGGGAATCAGCACCGGCTGCAGCAAAACCAGAAGAGACAAAGCTAAAGGAAGC
Found at i:91129051 original size:14 final size:14
Alignment explanation
Indices: 91129032--91129064 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
91129022 TACCGAATCG
91129032 GGCCAGTTCTTGCA
1 GGCCAGTTCTTGCA
*
91129046 GGCCAGTTCTTGCG
1 GGCCAGTTCTTGCA
91129060 GGCCA
1 GGCCA
91129065 AATGATCCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.30, G:0.33, T:0.24
Consensus pattern (14 bp):
GGCCAGTTCTTGCA
Found at i:91137635 original size:25 final size:25
Alignment explanation
Indices: 91137601--91137650 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
91137591 ACAACACTTT
91137601 GCCATTCTAGGAGTATTTAGGATGC
1 GCCATTCTAGGAGTATTTAGGATGC
91137626 GCCATTCTAGGAGTATTTAGGATGC
1 GCCATTCTAGGAGTATTTAGGATGC
91137651 AGGTTAAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (25 bp):
GCCATTCTAGGAGTATTTAGGATGC
Found at i:91144031 original size:25 final size:25
Alignment explanation
Indices: 91143985--91144033 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
91143975 TATGGGATCG
*
91143985 CATGATGTGGGTTCGTACCACCATT
1 CATGATGTGGGTTCGCACCACCATT
* *
91144010 CATGATGTGGGTTTGCATCACCAT
1 CATGATGTGGGTTCGCACCACCAT
91144034 GTAGATGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (25 bp):
CATGATGTGGGTTCGCACCACCATT
Found at i:91147930 original size:21 final size:22
Alignment explanation
Indices: 91147906--91147952 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
91147896 CACATTTCAT
91147906 TAATTCACACATTTTA-CCATA
1 TAATTCACACATTTTATCCATA
** *
91147927 TAATTTTCACATTTTATCCATT
1 TAATTCACACATTTTATCCATA
91147949 TAAT
1 TAAT
91147953 CATTATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (22 bp):
TAATTCACACATTTTATCCATA
Found at i:91165065 original size:37 final size:37
Alignment explanation
Indices: 91165024--91165098 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
91165014 AGTAAAAGTT
91165024 ATTTATTACACCTTAAACATACAATATCTTCCATCAA
1 ATTTATTACACCTTAAACATACAATATCTTCCATCAA
91165061 ATTTATTACACCTTAAACATACAATATCTTCCATCAA
1 ATTTATTACACCTTAAACATACAATATCTTCCATCAA
91165098 A
1 A
91165099 CATCAAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (37 bp):
ATTTATTACACCTTAAACATACAATATCTTCCATCAA
Found at i:91168281 original size:25 final size:24
Alignment explanation
Indices: 91168189--91168293 Score: 77
Period size: 25 Copynumber: 4.3 Consensus size: 24
91168179 GAGCTACCTG
*
91168189 TTAT-TGGCTCACATGAGCTTCCT
1 TTATATGGCTCACATGAGCTTCTT
** * *
91168212 AAATATGGCTCTCATGAGCTTCTCA
1 TTATATGGCTCACATGAGCTTCT-T
* * * *
91168237 TTATATAGCTTAGATAAGCTTCTT
1 TTATATGGCTCACATGAGCTTCTT
* *
91168261 GTTACATGGCTCACATGAGCTTCCTA
1 -TTATATGGCTCACATGAGCTT-CTT
91168287 TTATATG
1 TTATATG
91168294 CTCGATAGAG
Statistics
Matches: 58, Mismatches: 20, Indels: 6
0.69 0.24 0.07
Matches are distributed among these distances:
23 2 0.03
24 16 0.28
25 38 0.66
26 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (24 bp):
TTATATGGCTCACATGAGCTTCTT
Found at i:91168674 original size:41 final size:41
Alignment explanation
Indices: 91168617--91168698 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
91168607 TGTATGCATT
*
91168617 GAATGAATATGATTGGTAAGTTAAATTCTTGTTATACGAAC
1 GAATGAATACGATTGGTAAGTTAAATTCTTGTTATACGAAC
* *
91168658 GAATGGATACGATTGGTAAGTTAAGTTCTTGTTATACGAAC
1 GAATGAATACGATTGGTAAGTTAAATTCTTGTTATACGAAC
91168699 TTACTCAGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (41 bp):
GAATGAATACGATTGGTAAGTTAAATTCTTGTTATACGAAC
Found at i:91169807 original size:24 final size:25
Alignment explanation
Indices: 91169760--91169807 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
91169750 ACAGCCCTCT
* *
91169760 CGAGCTTCCCGTTATATAGTTCTTG
1 CGAGCTTCCCATTATATAGCTCTTG
91169785 CGAGCTTCCCATTA-ATAGCTCTT
1 CGAGCTTCCCATTATATAGCTCTT
91169808 CAGAGTATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.38
Consensus pattern (25 bp):
CGAGCTTCCCATTATATAGCTCTTG
Found at i:91174626 original size:42 final size:43
Alignment explanation
Indices: 91174524--91174630 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 43
91174514 TGTAAGATCA
91174524 TGTAAGACCATTTCTGGGACATCGGCATCGACTTGAGATTTACG
1 TGTAAGACCATTTCTGGGACATCGGCATCGACTT-AGATTTACG
91174568 TGTAAGACCATTTCTGGGACATCGGCATCG--TATATGATTT-CG
1 TGTAAGACCATTTCTGGGACATCGGCATCGACT-TA-GATTTACG
*
91174610 TGTGAGACC-TTGTCTGGGACA
1 TGTAAGACCATT-TCTGGGACA
91174631 GTGGCATTGA
Statistics
Matches: 59, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
41 2 0.03
42 21 0.36
43 6 0.10
44 30 0.51
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATTTCTGGGACATCGGCATCGACTTAGATTTACG
Found at i:91174668 original size:43 final size:42
Alignment explanation
Indices: 91174563--91174684 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
91174553 GACTTGAGAT
* *
91174563 TTACGTGTAAGACCATTTCTGGGACA-TCGGCATCGTATATGA
1 TTACGTGTAAGACCATGTCTGGGACAGT-GGCATTGTATATGA
* * * *
91174605 TTTCGTGTGAGACCTTGTCTGGGACAGTGGCATTGATATTTGA
1 TTACGTGTAAGACCATGTCTGGGACAGTGGCATTG-TATATGA
* *
91174648 TTACATGTAAGACCAAGTCTGGGAC-GTTGGCATTGTA
1 TTACGTGTAAGACCATGTCTGGGACAG-TGGCATTGTA
91174685 CAAGCTTTCT
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACAGTGGCATTGTATATGA
Found at i:91175489 original size:20 final size:20
Alignment explanation
Indices: 91175464--91175503 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
91175454 TGAAATGGTA
*
91175464 ATGTATGGAT-GATATGATTT
1 ATGTATGAATGGATAT-ATTT
91175484 ATGTATGAATGGATATATTT
1 ATGTATGAATGGATATATTT
91175504 GGCTACTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.45
Consensus pattern (20 bp):
ATGTATGAATGGATATATTT
Found at i:91187007 original size:56 final size:56
Alignment explanation
Indices: 91186942--91187061 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
91186932 ACAAGGGATG
91186942 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
91186998 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
91187054 ATGGGCAA
1 ATGGGCAA
91187062 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:91188431 original size:40 final size:40
Alignment explanation
Indices: 91188193--91188417 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
91188183 TCGAATGATG
* * * *
91188193 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
91188233 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91188273 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91188312 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91188352 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
91188393 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91188418 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91188439 original size:119 final size:119
Alignment explanation
Indices: 91188193--91188450 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
91188183 TCGAATGATG
* *
91188193 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
91188258 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
91188312 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
91188375 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
91188432 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
91188451 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:91194977 original size:56 final size:56
Alignment explanation
Indices: 91194891--91195010 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
91194881 ACAAGGGATG
91194891 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
91194947 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
91195003 ATGGGCAA
1 ATGGGCAA
91195011 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:91196380 original size:40 final size:40
Alignment explanation
Indices: 91196142--91196366 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
91196132 TCGAATGATG
* * * *
91196142 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
91196182 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91196222 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91196261 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91196301 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
91196342 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91196367 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91196388 original size:119 final size:119
Alignment explanation
Indices: 91196142--91196399 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
91196132 TCGAATGATG
* * *
91196142 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
91196207 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
91196261 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
91196324 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
91196381 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
91196400 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:91204911 original size:41 final size:40
Alignment explanation
Indices: 91204866--91204996 Score: 156
Period size: 41 Copynumber: 3.2 Consensus size: 40
91204856 AACAAAAAAA
* *
91204866 CCGCTAAAAACTGAGCAATAGCGGCGTTTTTTGTTAAAACG
1 CCGCTAAAAACTGAGCAATAGCGGCG-CTTTTGGTAAAACG
* *
91204907 CCGCTAAAAA-TAGAGCATTAGCGGCGCTTTTGGTAAGACG
1 CCGCTAAAAACT-GAGCAATAGCGGCGCTTTTGGTAAAACG
* * *
91204947 CCGCTAAAGACCAGAGCAGTAGCGGCGCTTTTGGTAAAACG
1 CCGCTAAA-AACTGAGCAATAGCGGCGCTTTTGGTAAAACG
*
91204988 CCACTAAAA
1 CCGCTAAAA
91204997 GTTTTGTAAC
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
40 21 0.27
41 57 0.73
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (40 bp):
CCGCTAAAAACTGAGCAATAGCGGCGCTTTTGGTAAAACG
Found at i:91205439 original size:24 final size:24
Alignment explanation
Indices: 91205412--91205460 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
91205402 CGTATATTTG
91205412 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
91205436 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
91205460 T
1 T
91205461 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:91206066 original size:18 final size:19
Alignment explanation
Indices: 91206043--91206081 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
91206033 AGGTCTTTTT
91206043 TATTTTT-TATCAAAATAA
1 TATTTTTATATCAAAATAA
*
91206061 TATTTTTATATGAAAATAA
1 TATTTTTATATCAAAATAA
91206080 TA
1 TA
91206082 AATATGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
TATTTTTATATCAAAATAA
Found at i:91210794 original size:15 final size:15
Alignment explanation
Indices: 91210774--91210807 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
91210764 TAATTTGATG
*
91210774 TTTGGATGTTCCATT
1 TTTGGATGTACCATT
91210789 TTTGGATGTACCATT
1 TTTGGATGTACCATT
91210804 TTTG
1 TTTG
91210808 TTCATCCGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.21, T:0.53
Consensus pattern (15 bp):
TTTGGATGTACCATT
Found at i:91212150 original size:53 final size:54
Alignment explanation
Indices: 91212048--91212153 Score: 169
Period size: 53 Copynumber: 2.0 Consensus size: 54
91212038 GCGCTTTTCG
* *
91212048 TGATCTTTAGTGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCTTGATCTTTAGT
1 TGATCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGATCTTTAGT
* *
91212102 TGATCTTTAGCGGCGTTTGT-GGGAAAGCGCTGCTAAAGGTCATGATCTTTAG
1 TGATCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGATCTTTAG
91212154 CGGCTTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
53 29 0.60
54 19 0.40
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (54 bp):
TGATCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATGATCTTTAGT
Found at i:91212691 original size:29 final size:29
Alignment explanation
Indices: 91212650--91212711 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
91212640 AACGAACCAA
*
91212650 AGGT-ATACCCTGTAGGTTGTCTGGGTGG
1 AGGTAATACCCTGTAGGTTGTCTAGGTGG
91212678 AGGTAATACCCTGTAGGTTGTCTAGGTGG
1 AGGTAATACCCTGTAGGTTGTCTAGGTGG
91212707 AGGTA
1 AGGTA
91212712 GAGATATAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 4 0.12
29 28 0.88
ACGTcount: A:0.19, C:0.13, G:0.37, T:0.31
Consensus pattern (29 bp):
AGGTAATACCCTGTAGGTTGTCTAGGTGG
Found at i:91213692 original size:26 final size:26
Alignment explanation
Indices: 91213662--91213724 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
91213652 TTTTATCCTA
91213662 GTAAAATTTTGACAATTGTACCCTTG
1 GTAAAATTTTGACAATTGTACCCTTG
* * *
91213688 GTAAAATTTTGACACTTTTACCTTTG
1 GTAAAATTTTGACAATTGTACCCTTG
91213714 GTAAAATTTTG
1 GTAAAATTTTG
91213725 TTGATTTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (26 bp):
GTAAAATTTTGACAATTGTACCCTTG
Found at i:91215552 original size:21 final size:21
Alignment explanation
Indices: 91215528--91215569 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
91215518 AAGAGATAGT
91215528 GTTGAAATACATTTCTACATG
1 GTTGAAATACATTTCTACATG
91215549 GTTGAAATACATTTCTACATG
1 GTTGAAATACATTTCTACATG
91215570 TTAAAACTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (21 bp):
GTTGAAATACATTTCTACATG
Found at i:91222530 original size:26 final size:26
Alignment explanation
Indices: 91222501--91222608 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
91222491 TGGTACAAAT
91222501 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
91222527 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91222553 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
91222579 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91222605 TGAT
1 TGAT
91222609 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:91224148 original size:26 final size:25
Alignment explanation
Indices: 91224096--91224148 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
91224086 TTTATTGTTT
91224096 TACCCCTAGTAGATAAATTACCGAAA
1 TACCCCTAG-AGATAAATTACCGAAA
*
91224122 TACCCCTAG-GATTAAATTGACCTAAA
1 TACCCCTAGAGA-TAAATT-ACCGAAA
91224148 T
1 T
91224149 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 6 0.25
26 16 0.67
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGATAAATTACCGAAA
Found at i:91229146 original size:49 final size:49
Alignment explanation
Indices: 91229074--91229259 Score: 230
Period size: 49 Copynumber: 3.8 Consensus size: 49
91229064 GAGGTCACGT
*
91229074 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCAGG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCAGG
* * * * * *
91229123 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCAC-GTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCAG-G
* * *
91229174 TGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTATTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCAGG
* *
91229223 TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
91229260 GCTTCGGCTA
Statistics
Matches: 114, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 73 0.64
50 3 0.03
51 38 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCAGG
Found at i:91229247 original size:100 final size:100
Alignment explanation
Indices: 91229059--91229254 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
91229049 CAAATGAACT
* *
91229059 ACTGTGAGGTCACGTTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCAGGT
1 ACTGTGA-GTCACGTTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCAGGT
91229124 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
65 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
* *
91229160 ACTGTGA-TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTATTGGTCGCATGT
1 ACTGTGAGTCACGT-TGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCAGGT
91229224 GTAGTACTAAGTGCAGGCTACTATGCGTACC
65 GTAGTACTAAGTGCAGGCTACTATGCGTACC
91229255 AGATAGCTTC
Statistics
Matches: 90, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
99 6 0.07
100 77 0.86
101 7 0.08
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (100 bp):
ACTGTGAGTCACGTTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCAGGTG
TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
Found at i:91235331 original size:50 final size:49
Alignment explanation
Indices: 91235265--91235363 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 49
91235255 TGGCCATGTG
*
91235265 GGCCACACGGGCTAGGCCAAATTAGGCATGTGGGCCACATAGGTGTGTT
1 GGCCACACGGGCTAGGCCAAATTAGGCATGTGGGCCACACAGGTGTGTT
*
91235314 GGCCTACACGGGCTAGGCCAAATTAGTCATGTGGGCCACACAGGTGTGTT
1 GGCC-ACACGGGCTAGGCCAAATTAGGCATGTGGGCCACACAGGTGTGTT
91235364 AGCCCACATG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 4 0.09
50 43 0.91
ACGTcount: A:0.22, C:0.23, G:0.33, T:0.21
Consensus pattern (49 bp):
GGCCACACGGGCTAGGCCAAATTAGGCATGTGGGCCACACAGGTGTGTT
Found at i:91242126 original size:8 final size:8
Alignment explanation
Indices: 91242113--91242142 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
91242103 AGATCGGCAC
91242113 AAGCCGAA
1 AAGCCGAA
91242121 AAGCCGAA
1 AAGCCGAA
*
91242129 ATGCCGAA
1 AAGCCGAA
91242137 AAGCCG
1 AAGCCG
91242143 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:91242611 original size:54 final size:54
Alignment explanation
Indices: 91242529--91242672 Score: 254
Period size: 54 Copynumber: 2.7 Consensus size: 54
91242519 TAGAGGAAGC
91242529 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
91242583 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
91242637 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
91242673 ACTTCGTCAC
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
53 6 0.07
54 81 0.93
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:91242683 original size:27 final size:27
Alignment explanation
Indices: 91242532--91242690 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
91242522 AGGAAGCGTC
*
91242532 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
91242559 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
91242586 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
91242613 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
91242640 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
91242667 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
91242691 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 105 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:91242684 original size:81 final size:80
Alignment explanation
Indices: 91242532--91242690 Score: 216
Period size: 81 Copynumber: 2.0 Consensus size: 80
91242522 AGGAAGCGTC
*
91242532 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
91242597 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
91242613 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
91242676 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
91242691 GCAGCCTCGC
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
80 17 0.24
81 53 0.76
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:91248113 original size:37 final size:37
Alignment explanation
Indices: 91248063--91248136 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
91248053 GATCGATGTC
*
91248063 GTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGATTT
1 GTTGTGATTAGCC--ATGAGATGTGGCTTATAATGATTT
91248100 GTTGT-ATGTAGCCATGAGATGTGGCTTATAATGATTT
1 GTTGTGAT-TAGCCATGAGATGTGGCTTATAATGATTT
91248137 TGGCTTGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 3 0.09
36 4 0.12
37 26 0.79
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (37 bp):
GTTGTGATTAGCCATGAGATGTGGCTTATAATGATTT
Found at i:91256241 original size:35 final size:35
Alignment explanation
Indices: 91256175--91256242 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
91256165 ATATCTATAA
* * *
91256175 CTGTATCTGTATCTAAAATGCGCTCAAGCCCGATT
1 CTGTATCTGTAACTAAAATGAGCCCAAGCCCGATT
* * *
91256210 CTGTATCTGTAACTGATATGAGCCCATGCCCGA
1 CTGTATCTGTAACTAAAATGAGCCCAAGCCCGA
91256243 ATATGAATCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (35 bp):
CTGTATCTGTAACTAAAATGAGCCCAAGCCCGATT
Found at i:91257736 original size:42 final size:42
Alignment explanation
Indices: 91257672--91257755 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
91257662 AATAGAGTAT
*
91257672 AAGGGAATCGATCGATTATTAGTTCGTGGCATCGTCTTTCAA
1 AAGGGAATCGATCGATTATTAGTGCGTGGCATCGTCTTTCAA
*
91257714 AAGGGAATCGATCGATTGTTAGTGCGTGGCATCGTCTTTCAA
1 AAGGGAATCGATCGATTATTAGTGCGTGGCATCGTCTTTCAA
91257756 GTTTGTATTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
AAGGGAATCGATCGATTATTAGTGCGTGGCATCGTCTTTCAA
Found at i:91259266 original size:24 final size:24
Alignment explanation
Indices: 91259236--91259287 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
91259226 CTTTGAGATG
91259236 TTTTTATTTGCGATTATGAACTAA
1 TTTTTATTTGCGATTATGAACTAA
91259260 TTTTTATTTGCGATTATGAACTAA
1 TTTTTATTTGCGATTATGAACTAA
91259284 TTTT
1 TTTT
91259288 CTAAATACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.27, C:0.08, G:0.12, T:0.54
Consensus pattern (24 bp):
TTTTTATTTGCGATTATGAACTAA
Found at i:91262985 original size:27 final size:27
Alignment explanation
Indices: 91262948--91263152 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
91262938 TAAATTGTAC
91262948 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
91262975 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91263002 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91263028 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91263056 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91263084 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91263111 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91263138 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91263153 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91263087 original size:109 final size:108
Alignment explanation
Indices: 91262949--91263152 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
91262939 AAATTGTACA
* *
91262949 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
91263014 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
91263057 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
91263122 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
91263153 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:91270928 original size:27 final size:27
Alignment explanation
Indices: 91270891--91271095 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
91270881 TAAATTGTAC
91270891 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
91270918 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91270945 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91270971 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91270999 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91271027 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91271054 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91271081 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91271096 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91271030 original size:109 final size:108
Alignment explanation
Indices: 91270892--91271095 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
91270882 AAATTGTACA
* *
91270892 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
91270957 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
91271000 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
91271065 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
91271096 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:91283912 original size:14 final size:15
Alignment explanation
Indices: 91283893--91283922 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
91283883 ATATTTGACT
91283893 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
91283907 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
91283922 T
1 T
91283923 TAATGCGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:91293363 original size:55 final size:55
Alignment explanation
Indices: 91293304--91293409 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 55
91293294 ACCACGGGTG
* * *
91293304 TTCCACACGGGCGTGTCACACGCCCGTGTTGTTTTGGCAGGCTCGCCCACGATTC
1 TTCCACACGGGCATGTCACACGCCCGTATTGTTTTGGCAGGCTCGACCACGATTC
* *
91293359 TTCCACACGGTCATGTCGCACGCCCGTATTGTTTTGGCAGGCTCGACCACG
1 TTCCACACGGGCATGTCACACGCCCGTATTGTTTTGGCAGGCTCGACCACG
91293410 GCCATATCGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.14, C:0.34, G:0.26, T:0.25
Consensus pattern (55 bp):
TTCCACACGGGCATGTCACACGCCCGTATTGTTTTGGCAGGCTCGACCACGATTC
Found at i:91297258 original size:16 final size:18
Alignment explanation
Indices: 91297237--91297270 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
91297227 TCTCAGAAGA
91297237 ATAAAG-AATA-CAAAAC
1 ATAAAGAAATACCAAAAC
91297253 ATAAAGAAATACCAAAAC
1 ATAAAGAAATACCAAAAC
91297271 TCCTAAAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 4 0.25
18 6 0.38
ACGTcount: A:0.68, C:0.15, G:0.06, T:0.12
Consensus pattern (18 bp):
ATAAAGAAATACCAAAAC
Found at i:91303478 original size:20 final size:20
Alignment explanation
Indices: 91303431--91303478 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
91303421 GTATTAAGAG
91303431 AAATAAATAAAACAAAAACCA
1 AAATAAATAAAACAAAAA-CA
*
91303452 AAA-AAATAAAATAAAATA-A
1 AAATAAATAAAACAAAA-ACA
91303471 AAATAAAT
1 AAATAAAT
91303479 GGACTCAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.17
20 16 0.67
21 4 0.17
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (20 bp):
AAATAAATAAAACAAAAACA
Found at i:91307117 original size:52 final size:52
Alignment explanation
Indices: 91307039--91307144 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
91307029 AAACTAAAGG
91307039 GTATACTAGCTTGGGTCACATGGCCAACCACACGCCCGTATGTCCAGCCCGT
1 GTATACTAGCTTGGGTCACATGGCCAACCACACGCCCGTATGTCCAGCCCGT
*
91307091 GTATACTAGCTTGGGTCACATGGCCAACCACACGCCCGTGTGTCCAGCCCGT
1 GTATACTAGCTTGGGTCACATGGCCAACCACACGCCCGTATGTCCAGCCCGT
91307143 GT
1 GT
91307145 GCCCTACGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.20, C:0.34, G:0.25, T:0.22
Consensus pattern (52 bp):
GTATACTAGCTTGGGTCACATGGCCAACCACACGCCCGTATGTCCAGCCCGT
Found at i:91313728 original size:42 final size:42
Alignment explanation
Indices: 91313618--91313779 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 42
91313608 TTCAGATATA
* *
91313618 TGATTTCGTGTAAGACCACGTCTGGGA-AGTTGGCACCG-ATT
1 TGATTTCGTGTAAGACCATGTCTGGGACA-TTGGCATCGTATT
* *
91313659 TGAGATTTATGTGTAAAACCATGTCTGGGACATTGGCATCGTATT
1 T--GATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGTATT
* * * *
91313704 TGATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCAATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATC-GTATT
* * *
91313747 TGATTACATGTAAGACCATGTCTGGGACGTTGG
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGG
91313780 TATTGTACGA
Statistics
Matches: 99, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 26 0.26
43 41 0.41
44 26 0.26
45 5 0.05
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATT
Found at i:91314530 original size:23 final size:22
Alignment explanation
Indices: 91314499--91314541 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
91314489 TTGTGAATCA
* *
91314499 TATGTTTTGGTATGACTTTGGCT
1 TATGATTTGGCATGA-TTTGGCT
91314522 TATGATTTGGCATGATTTGG
1 TATGATTTGGCATGATTTGG
91314542 TATGGATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.16, C:0.07, G:0.28, T:0.49
Consensus pattern (22 bp):
TATGATTTGGCATGATTTGGCT
Found at i:91338833 original size:15 final size:14
Alignment explanation
Indices: 91338813--91338860 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 14
91338803 GCCAAAGAGT
91338813 GAAGGAGAATAAAGA
1 GAAGGAGAAT-AAGA
91338828 GAAGGAGAATAAGA
1 GAAGGAGAATAAGA
91338842 GAA-GA-AA-AA-A
1 GAAGGAGAATAAGA
91338852 GAAGGAGAA
1 GAAGGAGAA
91338861 GGAGAGGGCG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
10 4 0.13
11 4 0.13
12 4 0.13
13 2 0.06
14 7 0.23
15 10 0.32
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.04
Consensus pattern (14 bp):
GAAGGAGAATAAGA
Found at i:91338866 original size:24 final size:26
Alignment explanation
Indices: 91338818--91338866 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
91338808 AGAGTGAAGG
*
91338818 AGAATAAAGAGAAGGAGAATAAGAGA
1 AGAATAAAGAGAAGGAGAAGAAGAGA
*
91338844 AGAA-AAA-AGAAGGAGAAGGAGAG
1 AGAATAAAGAGAAGGAGAAGAAGAG
91338867 GGCGAGAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
25 3 0.14
26 4 0.19
ACGTcount: A:0.61, C:0.00, G:0.35, T:0.04
Consensus pattern (26 bp):
AGAATAAAGAGAAGGAGAAGAAGAGA
Found at i:91339359 original size:49 final size:51
Alignment explanation
Indices: 91339253--91339362 Score: 124
Period size: 49 Copynumber: 2.2 Consensus size: 51
91339243 AAAGAATGTT
** * *
91339253 TTATTTTTTTATGTAATTTATTTGTTATGTGTGTTTTAGGTTGATTAGATA
1 TTATTTTTTTATGTAATTTATTTGGCATGTGTATTTTAGATTGATTAGATA
91339304 -TA-TTTTTTATGTAATTTATTTGGCATGT-TATTTT-GATT-ATTTTA-ATA
1 TTATTTTTTTATGTAATTTATTTGGCATGTGTATTTTAGATTGA--TTAGATA
91339351 TTATTTTTTTAT
1 TTATTTTTTTAT
91339363 ATTTTATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
46 1 0.02
47 6 0.12
48 10 0.20
49 32 0.63
50 2 0.04
ACGTcount: A:0.23, C:0.01, G:0.13, T:0.64
Consensus pattern (51 bp):
TTATTTTTTTATGTAATTTATTTGGCATGTGTATTTTAGATTGATTAGATA
Found at i:91340626 original size:9 final size:9
Alignment explanation
Indices: 91340610--91340670 Score: 104
Period size: 9 Copynumber: 6.8 Consensus size: 9
91340600 GGTATTTTTC
91340610 GGTAATTCG
1 GGTAATTCG
*
91340619 GTTAATTCG
1 GGTAATTCG
*
91340628 GTTAATTCG
1 GGTAATTCG
91340637 GGTAATTCG
1 GGTAATTCG
91340646 GGTAATTCG
1 GGTAATTCG
91340655 GGTAATTCG
1 GGTAATTCG
91340664 GGTAATT
1 GGTAATT
91340671 TTTAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.23, C:0.10, G:0.30, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:91343265 original size:12 final size:12
Alignment explanation
Indices: 91343248--91343272 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91343238 TTTTAAAATT
91343248 ATGAATAATATA
1 ATGAATAATATA
91343260 ATGAATAATATA
1 ATGAATAATATA
91343272 A
1 A
91343273 AACATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
ATGAATAATATA
Found at i:91343346 original size:14 final size:13
Alignment explanation
Indices: 91343255--91343390 Score: 67
Period size: 13 Copynumber: 10.4 Consensus size: 13
91343245 ATTATGAATA
91343255 ATATAATGAATAAT
1 ATATAAT-AATAAT
91343269 ATA-AA-ACATAAAT
1 ATATAATA-AT-AAT
*
91343282 AATATAACAGATAAT
1 -ATATAATA-ATAAT
*
91343297 ATACTATATACATAAC
1 ATA-TA-ATA-ATAAT
*
91343313 ATATAATAAAAAT
1 ATATAATAATAAT
91343326 A-ATAATAAGTAAT
1 ATATAATAA-TAAT
91343339 ATATAATAA-AA-
1 ATATAATAATAAT
91343350 ATATAAT-A-AAT
1 ATATAATAATAAT
*
91343361 GT-TATATAATAA-
1 ATATA-ATAATAAT
91343373 ATATAAT-ATAAAT
1 ATATAATAAT-AAT
91343386 ATATA
1 ATATA
91343391 TAGGAAAATA
Statistics
Matches: 97, Mismatches: 9, Indels: 33
0.70 0.06 0.24
Matches are distributed among these distances:
10 5 0.05
11 13 0.13
12 17 0.18
13 22 0.23
14 19 0.20
15 9 0.09
16 12 0.12
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (13 bp):
ATATAATAATAAT
Found at i:91343353 original size:11 final size:11
Alignment explanation
Indices: 91343313--91343388 Score: 64
Period size: 11 Copynumber: 6.5 Consensus size: 11
91343303 TATACATAAC
91343313 ATATAATAAAA
1 ATATAATAAAA
91343324 ATAATAATAAGTAA
1 AT-ATAATAA--AA
91343338 TATATAATAAAA
1 -ATATAATAAAA
*
91343350 ATATAATAAAT
1 ATATAATAAAA
*
91343361 GT-TATATAATAA
1 ATATA-ATAA-AA
*
91343373 ATATAATATAA
1 ATATAATAAAA
91343384 ATATA
1 ATATA
91343389 TATAGGAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
10 2 0.04
11 24 0.45
12 14 0.26
13 2 0.04
14 9 0.17
15 2 0.04
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (11 bp):
ATATAATAAAA
Found at i:91343355 original size:25 final size:25
Alignment explanation
Indices: 91343308--91343392 Score: 93
Period size: 25 Copynumber: 3.4 Consensus size: 25
91343298 TACTATATAC
*
91343308 ATAACATATAATAAAAATAATAATAA
1 ATAATATATAATAAAAAT-ATAATAA
*
91343334 GTAATATATAATAAAAATATAATAA
1 ATAATATATAATAAAAATATAATAA
** *
91343359 ATGTTATATAATAAATATA-ATATAA
1 ATAATATATAATAAAAATATA-ATAA
91343384 AT-ATATATA
1 ATAATATATA
91343393 GGAAAATAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
24 7 0.14
25 28 0.55
26 16 0.31
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.34
Consensus pattern (25 bp):
ATAATATATAATAAAAATATAATAA
Found at i:91343413 original size:14 final size:14
Alignment explanation
Indices: 91343255--91343415 Score: 94
Period size: 14 Copynumber: 11.9 Consensus size: 14
91343245 ATTATGAATA
*
91343255 ATATAATGAATAAT
1 ATATAATAAATAAT
*
91343269 ATA-AA-ACATAAAT
1 ATATAATAAAT-AAT
* *
91343282 AATATAACAGATAAT
1 -ATATAATAAATAAT
* *
91343297 ATACTATATACATAAC
1 ATA-TA-ATAAATAAT
91343313 ATATAATAAA-AAT
1 ATATAATAAATAAT
*
91343326 A-ATAATAAGTAAT
1 ATATAATAAATAAT
91343339 ATATAAT-AA-AA-
1 ATATAATAAATAAT
**
91343350 ATATAATAAATGTT
1 ATATAATAAATAAT
91343364 ATATAATAAAT-AT
1 ATATAATAAATAAT
91343377 A-AT-ATAAAT-AT
1 ATATAATAAATAAT
91343388 ATATAGGA-AAATAAT
1 ATATA--ATAAATAAT
*
91343403 ATATGATAAATAA
1 ATATAATAAATAA
91343416 AAATTTTATA
Statistics
Matches: 116, Mismatches: 14, Indels: 34
0.71 0.09 0.21
Matches are distributed among these distances:
11 16 0.14
12 17 0.15
13 16 0.14
14 39 0.34
15 16 0.14
16 12 0.10
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (14 bp):
ATATAATAAATAAT
Found at i:91343457 original size:23 final size:23
Alignment explanation
Indices: 91343418--91343484 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 23
91343408 ATAAATAAAA
91343418 ATTTTATATAA-ATATATAAATAGT
1 ATTTTA-ATAATA-ATATAAATAGT
*
91343442 ATTTTAATAATAATATATGTATAGT
1 ATTTTAATAATAATATA--AATAGT
*
91343467 -TTTTTATAATAA-ATAAAT
1 ATTTTAATAATAATATAAAT
91343485 TATATATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
21 2 0.05
23 12 0.32
24 18 0.49
25 5 0.14
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (23 bp):
ATTTTAATAATAATATAAATAGT
Found at i:91343488 original size:24 final size:26
Alignment explanation
Indices: 91343419--91343490 Score: 78
Period size: 25 Copynumber: 2.8 Consensus size: 26
91343409 TAAATAAAAA
*
91343419 TTTTAT-ATAAATATATAAATAGTAT
1 TTTTATAATAAATATATATATAGTAT
* *
91343444 TTTAATAAT-AATATATGTATAGT-T
1 TTTTATAATAAATATATATATAGTAT
*
91343468 TTTTATAATAAATAAATTATATA
1 TTTTATAATAAATATA-TATATA
91343491 TATAAAAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
24 9 0.24
25 22 0.58
26 7 0.18
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (26 bp):
TTTTATAATAAATATATATATAGTAT
Found at i:91345036 original size:44 final size:42
Alignment explanation
Indices: 91344986--91345067 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 42
91344976 CCTGTTGATA
91344986 TCTTCGATCTGCTCTCCGTCG-AATACAGAGACGCCAAATCTGTT
1 TCTTCGATCTGCTCT-C-T-GAAATACAGAGACGCCAAATCTGTT
* * *
91345030 TCTTCGATTTGTTCTCTGAAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCTGAAATACAGAGACGCCAAATC
91345068 ATCTTAGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.03
42 19 0.56
43 1 0.03
44 13 0.38
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (42 bp):
TCTTCGATCTGCTCTCTGAAATACAGAGACGCCAAATCTGTT
Found at i:91345539 original size:205 final size:205
Alignment explanation
Indices: 91345031--91345818 Score: 1319
Period size: 205 Copynumber: 3.8 Consensus size: 205
91345021 AAATCTGTTT
*
91345031 CTTCGATTTGTTCTCTGA-AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
91345095 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
91345160 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTACCCTCCGTTGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGCATCTGCTCTCCGTCGAA-ATG
* *
91345225 GAGACGCCAAA
195 GAGATGCCAGA
* * *
91345236 CTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
* * *
91345301 GTGAAAGCCAAACCAGCTATGTCTTCGATTTGTTCGTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
91345366 GGATCTGCTTCAGTATAAACAACTAAAGGTTAGATCTGCTATGCATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGCATCTGCTCTCCGTCGAAATGG
91345431 AGATGCCAGA
196 AGATGCCAGA
*
91345441 CTTCGATTTGTTCTCTGACAATACAGAAATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
* *
91345506 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
91345571 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATATGCTCTCCGTCAAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGCATCTGCTCTCCGTCGAAATGG
91345636 AGATGCCAGA
196 AGATGCCAGA
* *
91345646 CTTCGATTTGTTCTCTGACAATACAGATATGCCAAATCATCTTAGATTTGCTTCAGCATAAAC-C
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
*
91345710 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGTCAAACCATCTT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
91345775 GGATTTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGC
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGC
91345819 TGCGGCCTAT
Statistics
Matches: 549, Mismatches: 33, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
204 104 0.19
205 283 0.52
206 162 0.30
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGCATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:91357993 original size:12 final size:12
Alignment explanation
Indices: 91357976--91358000 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91357966 TTTTAAAATT
91357976 ATGAATAATATA
1 ATGAATAATATA
91357988 ATGAATAATATA
1 ATGAATAATATA
91358000 A
1 A
91358001 AACATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
ATGAATAATATA
Found at i:91358057 original size:11 final size:11
Alignment explanation
Indices: 91358041--91358113 Score: 60
Period size: 11 Copynumber: 6.5 Consensus size: 11
91358031 TATACATAAC
91358041 ATATAATAAAA
1 ATATAATAAAA
* *
91358052 AAATAAGT-AAT
1 ATATAA-TAAAA
91358063 ATATAATAAAA
1 ATATAATAAAA
*
91358074 ATATAATAAATGTT
1 ATATAATAAA---A
91358088 ATATAAT-AAA
1 ATATAATAAAA
*
91358098 ATATAATATAA
1 ATATAATAAAA
91358109 ATATA
1 ATATA
91358114 TATAGGAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
10 8 0.16
11 31 0.63
12 1 0.02
13 2 0.04
14 7 0.14
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (11 bp):
ATATAATAAAA
Found at i:91358081 original size:25 final size:24
Alignment explanation
Indices: 91358036--91358115 Score: 85
Period size: 25 Copynumber: 3.4 Consensus size: 24
91358026 TACGATATAC
*
91358036 ATAACATATAATAAAA-A-AATAA
1 ATAATATATAATAAAATATAATAA
*
91358058 GTAATATATAATAAAAATATAATAA
1 ATAATATATAAT-AAAATATAATAA
** *
91358083 ATGTTATATAATAAAATATAATAT
1 ATAATATATAATAAAATATAATAA
91358107 A-AATATATA
1 ATAATATATA
91358116 TAGGAAATAA
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
22 10 0.21
23 10 0.21
24 13 0.28
25 14 0.30
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.33
Consensus pattern (24 bp):
ATAATATATAATAAAATATAATAA
Found at i:91358137 original size:14 final size:13
Alignment explanation
Indices: 91358054--91358139 Score: 56
Period size: 14 Copynumber: 6.6 Consensus size: 13
91358044 TAATAAAAAA
*
91358054 ATAAGTAATATAT
1 ATAAATAATATAT
91358067 AATAAA-AATATA-
1 -ATAAATAATATAT
*
91358079 ATAAAT-GT-TAT
1 ATAAATAATATAT
*
91358090 ATAATAAAATATAAT
1 ATAA-ATAATAT-AT
91358105 ATAAAT-ATATAT
1 ATAAATAATATAT
*
91358117 AGGAAATAATATAT
1 A-TAAATAATATAT
91358131 GATAAATAA
1 -ATAAATAA
91358140 AAATTTTATA
Statistics
Matches: 56, Mismatches: 7, Indels: 18
0.69 0.09 0.22
Matches are distributed among these distances:
10 2 0.04
11 10 0.18
12 4 0.07
13 15 0.27
14 18 0.32
15 7 0.12
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (13 bp):
ATAAATAATATAT
Found at i:91358207 original size:26 final size:27
Alignment explanation
Indices: 91358143--91358216 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 27
91358133 TAAATAAAAA
**
91358143 TTTTAT-ATAAATATATAAATAGTACT
1 TTTTATAATAAATATATGTATAGTACT
* *
91358169 TTTAATAAT-AATATATGTATAGT-TT
1 TTTTATAATAAATATATGTATAGTACT
*
91358194 TTTTATAATAAATAAATTGTATA
1 TTTTATAATAAATATA-TGTATA
91358217 TATAAAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
25 9 0.23
26 22 0.56
27 8 0.21
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (27 bp):
TTTTATAATAAATATATGTATAGTACT
Found at i:91362720 original size:18 final size:18
Alignment explanation
Indices: 91362697--91362744 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
91362687 ACTAGAGCCA
91362697 GAGCCAGAGCCCAAGCTC
1 GAGCCAGAGCCCAAGCTC
91362715 GAGCCAGAGCCCAAGCTC
1 GAGCCAGAGCCCAAGCTC
*
91362733 GAGCCCGAGCCC
1 GAGCCAGAGCCC
91362745 GAGTGATTGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.25, C:0.42, G:0.29, T:0.04
Consensus pattern (18 bp):
GAGCCAGAGCCCAAGCTC
Found at i:91362741 original size:6 final size:6
Alignment explanation
Indices: 91362691--91362747 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
91362681 ATACGAACTA
* * * * * * *
91362691 GAGCCA GAGCCA GAGCCC AAGCTC GAGCCA GAGCCC AAGCTC GAGCCC
1 GAGCCC GAGCCC GAGCCC GAGCCC GAGCCC GAGCCC GAGCCC GAGCCC
91362739 GAGCCC GAG
1 GAGCCC GAG
91362748 TGATTGCATA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.26, C:0.39, G:0.32, T:0.04
Consensus pattern (6 bp):
GAGCCC
Found at i:91362930 original size:33 final size:32
Alignment explanation
Indices: 91362857--91362941 Score: 89
Period size: 33 Copynumber: 2.6 Consensus size: 32
91362847 GATATCTTTG
* *
91362857 GGTCGTATCCACCGCAGTACAGCACTCCTCCC
1 GGTCGTATCCACCGCAGTACACCACTCCTCCA
* * *
91362889 GGCCCGTATCCACCGTAGTACTCCACTCCTCCTA
1 GG-TCGTATCCACCGCAGTACACCACTCCTCC-A
* *
91362923 GGTCGTATCTACCACAGTA
1 GGTCGTATCCACCGCAGTA
91362942 AGGCACTCCT
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
32 2 0.05
33 38 0.90
34 2 0.05
ACGTcount: A:0.20, C:0.40, G:0.18, T:0.22
Consensus pattern (32 bp):
GGTCGTATCCACCGCAGTACACCACTCCTCCA
Found at i:91365092 original size:40 final size:40
Alignment explanation
Indices: 91365037--91365117 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
91365027 AAAATAACAA
91365037 TAAAAAATAATACATTTTCTTTCTTTCTTATCTTCTCCCT
1 TAAAAAATAATACATTTTCTTTCTTTCTTATCTTCTCCCT
91365077 TAAAAAATAATACATTTTCTTTCTTTCTTATCTTCTCCCT
1 TAAAAAATAATACATTTTCTTTCTTTCTTATCTTCTCCCT
91365117 T
1 T
91365118 TCTTGTTCTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.00, T:0.51
Consensus pattern (40 bp):
TAAAAAATAATACATTTTCTTTCTTTCTTATCTTCTCCCT
Found at i:91371157 original size:126 final size:126
Alignment explanation
Indices: 91370770--91371158 Score: 414
Period size: 126 Copynumber: 3.1 Consensus size: 126
91370760 TTTTTTGTTT
* * * * * * * *
91370770 TTTTTCTTCAGTAGTATCTAGAAAAAA-AAATGTAAGAAGAAGTTTCTGAAGAAATAGTATCCAA
1 TTTTTCTACAGTGGTATCT-GAAAAAATAATTGTGAGAAGACGTTTCTGAAAAAATAGTGTCAAA
* * * *
91370834 AACGCTTCAAGCA-TGACGCATTGTCAGCAAAATTACT-AAAAAATGCTTCCACGTGGACGCT-
65 AACACTTCAAGCAGT-ATGCATTCTCAGCAAAATTACTGAAAAAA-GCTCCCACGTGGACGCTC
* * *
91370895 TTTTTCTACAGTGGTATCT-AAGAAAATAATTTTGAGAAGACGTTTTTGAAAAAATAGTGTAAAA
1 TTTTTCTACAGTGGTATCTGAA-AAAATAATTGTGAGAAGACGTTTCTGAAAAAATAGTGTCAAA
* * * * * * *
91370959 AACACTTTAAGCAGGATGCATTCTCAGCAAAAATGCTGAAAAAAGCTCCCATGTGCATGCTC
65 AACACTTCAAGCAGTATGCATTCTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
** * * *
91371021 TTTTGATACAGTGGTATCTGAAAAAATAATTGTGAGATGACCTTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTGGTATCTGAAAAAATAATTGTGAGAAGACGTTTCTGAAAAAATAGTGTCAAAA
* *
91371086 ACACTTCATGCAGTATGCACTT-TCAGTAAAATTACTGACAAAAA-CTCCCACGTGGACGCTC
66 ACACTTCAAGCAGTATGCA-TTCTCAGCAAAATTACTGA-AAAAAGCTCCCACGTGGACGCTC
91371147 TTTTTCTACAGT
1 TTTTTCTACAGT
91371159 AGTTCCTATT
Statistics
Matches: 215, Mismatches: 41, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
123 2 0.01
124 4 0.02
125 87 0.40
126 113 0.53
127 9 0.04
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAGTGGTATCTGAAAAAATAATTGTGAGAAGACGTTTCTGAAAAAATAGTGTCAAAA
ACACTTCAAGCAGTATGCATTCTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
Found at i:91374285 original size:29 final size:29
Alignment explanation
Indices: 91374253--91374341 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 29
91374243 AAAACAACTT
91374253 TTATTTTATTAAAAATATAAAAGAGTAAA
1 TTATTTTATTAAAAATATAAAAGAGTAAA
* * *
91374282 TTA--TAATT-AAAATACTAAAA-A-CAACTT
1 TTATTTTATTAAAAATA-TAAAAGAGTAA--A
*
91374309 TTATTTTATTACAAATATAAAAGAGTAAA
1 TTATTTTATTAAAAATATAAAAGAGTAAA
91374338 TTAT
1 TTAT
91374342 AATTAAAATA
Statistics
Matches: 45, Mismatches: 7, Indels: 16
0.66 0.10 0.24
Matches are distributed among these distances:
25 2 0.04
26 7 0.16
27 12 0.27
29 16 0.36
30 6 0.13
31 2 0.04
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (29 bp):
TTATTTTATTAAAAATATAAAAGAGTAAA
Done.