Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 285 of 325
Found at i:91374291 original size:27 final size:27
Alignment explanation
Indices: 91374264--91374357 Score: 79
Period size: 27 Copynumber: 3.4 Consensus size: 27
91374254 TATTTTATTA
91374264 AAAATA-TAAAAGAGTAAATTATAATT
1 AAAATACTAAAAGAGTAAATTATAATT
* * *
91374290 AAAATACTAAAA-A-CAACTTTTATTTTATT
1 AAAATACTAAAAGAGTAA--ATTA--TAATT
91374319 ACAAATA-TAAAAGAGTAAATTATAATT
1 A-AAATACTAAAAGAGTAAATTATAATT
*
91374346 AAAATATTAAAA
1 AAAATACTAAAA
91374358 ACAACTTTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
25 2 0.04
26 12 0.23
27 18 0.34
29 13 0.25
30 6 0.11
31 2 0.04
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (27 bp):
AAAATACTAAAAGAGTAAATTATAATT
Found at i:91374303 original size:56 final size:56
Alignment explanation
Indices: 91374243--91374377 Score: 252
Period size: 56 Copynumber: 2.4 Consensus size: 56
91374233 TTCCTTATTC
91374243 AAAACAACTTTTATTTTATTAAAAATATAAAAGAGTAAATTATAATTAAAATACTA
1 AAAACAACTTTTATTTTATTAAAAATATAAAAGAGTAAATTATAATTAAAATACTA
* *
91374299 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATATTA
1 AAAACAACTTTTATTTTATTAAAAATATAAAAGAGTAAATTATAATTAAAATACTA
91374355 AAAACAACTTTTATTTTATTAAA
1 AAAACAACTTTTATTTTATTAAA
91374378 TGAAAAAGTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 76 1.00
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (56 bp):
AAAACAACTTTTATTTTATTAAAAATATAAAAGAGTAAATTATAATTAAAATACTA
Found at i:91374368 original size:27 final size:26
Alignment explanation
Indices: 91374282--91374368 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 26
91374272 AAAGAGTAAA
91374282 TTATAATTAAAATACTAAAAACAACTT
1 TTATAATTAAAATA-TAAAAACAACTT
* * *
91374309 TTATTTTATTACAAATATAAAAGAGTAA--A
1 TTA--TAATTA-AAATATAAAA-A-CAACTT
91374338 TTATAATTAAAATATTAAAAACAACTT
1 TTATAATTAAAATA-TAAAAACAACTT
91374365 TTAT
1 TTAT
91374369 TTTATTAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 16
0.68 0.09 0.24
Matches are distributed among these distances:
25 2 0.04
26 6 0.13
27 17 0.37
29 13 0.28
30 6 0.13
31 2 0.04
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.38
Consensus pattern (26 bp):
TTATAATTAAAATATAAAAACAACTT
Found at i:91375458 original size:7 final size:7
Alignment explanation
Indices: 91375448--91375494 Score: 85
Period size: 7 Copynumber: 6.7 Consensus size: 7
91375438 TTGTATACAT
91375448 AATACTA
1 AATACTA
91375455 AATACTA
1 AATACTA
91375462 AATACTA
1 AATACTA
91375469 AATACTA
1 AATACTA
*
91375476 AATATTA
1 AATACTA
91375483 AATACTA
1 AATACTA
91375490 AATAC
1 AATAC
91375495 GAAAGAGTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (7 bp):
AATACTA
Found at i:91376535 original size:48 final size:48
Alignment explanation
Indices: 91376438--91376535 Score: 144
Period size: 48 Copynumber: 2.0 Consensus size: 48
91376428 ATAAAATTAA
* **
91376438 AATTAAAATTGCATAAATGAAAAAAATATTAAATTGTATTGAAAAATT
1 AATTAAAATTACATAAATGAAAAAAATATTAAATACTATTGAAAAATT
*
91376486 AATTAAAATTACATAAATTAAAAAAATATTAAATACTATT-AAAATATT
1 AATTAAAATTACATAAATGAAAAAAATATTAAATACTATTGAAAA-ATT
91376534 AA
1 AA
91376536 AATTATCACT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 4 0.09
48 41 0.91
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (48 bp):
AATTAAAATTACATAAATGAAAAAAATATTAAATACTATTGAAAAATT
Found at i:91376713 original size:12 final size:10
Alignment explanation
Indices: 91376687--91376725 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
91376677 AAGAGAGCTT
* *
91376687 TGAGAAAATT
1 TGAGAGAATA
91376697 TGAGAGAATA
1 TGAGAGAATA
91376707 TGAGAGAATA
1 TGAGAGAATA
91376717 TGAGAGAAT
1 TGAGAGAAT
91376726 TTTTGGAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.28, T:0.23
Consensus pattern (10 bp):
TGAGAGAATA
Found at i:91376713 original size:22 final size:22
Alignment explanation
Indices: 91376688--91376747 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 22
91376678 AGAGAGCTTT
91376688 GAGAAAATTTGAGAGAATATGA
1 GAGAAAATTTGAGAGAATATGA
* * **
91376710 GAG--AATATGAGAGAATTTTT
1 GAGAAAATTTGAGAGAATATGA
91376730 G-GAAGAATTTGAGAGAAT
1 GAGAA-AATTTGAGAGAAT
91376748 TTGGATAGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 1 0.03
20 14 0.47
22 15 0.50
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.27
Consensus pattern (22 bp):
GAGAAAATTTGAGAGAATATGA
Found at i:91376750 original size:20 final size:21
Alignment explanation
Indices: 91376688--91376752 Score: 71
Period size: 20 Copynumber: 3.1 Consensus size: 21
91376678 AGAGAGCTTT
* *
91376688 GAGAAAATTTGAGAGAATAT-
1 GAGAGAATTTGAGAGAATTTG
*
91376708 GAGAGAATATGAGAGAATTTTTG
1 GAGAGAATTTGAGAGAA--TTTG
91376731 GA-AGAATTTGAGAGAATTTG
1 GAGAGAATTTGAGAGAATTTG
91376751 GA
1 GA
91376753 TAGGAGGACT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
20 21 0.55
22 15 0.39
23 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.28
Consensus pattern (21 bp):
GAGAGAATTTGAGAGAATTTG
Found at i:91383591 original size:22 final size:21
Alignment explanation
Indices: 91383566--91383606 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
91383556 GCCGTCTAGG
*
91383566 AAAATTATATATATCAAATTCC
1 AAAAATATATAT-TCAAATTCC
91383588 AAAAATATATATTCAAATT
1 AAAAATATATATTCAAATT
91383607 GAAACCATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (21 bp):
AAAAATATATATTCAAATTCC
Found at i:91394967 original size:51 final size:51
Alignment explanation
Indices: 91394891--91394991 Score: 202
Period size: 51 Copynumber: 2.0 Consensus size: 51
91394881 TTTCATATAG
91394891 TTGAGTGACCAATGTTATAGTTTACTCTATTGTTATAAATATATTTTTATT
1 TTGAGTGACCAATGTTATAGTTTACTCTATTGTTATAAATATATTTTTATT
91394942 TTGAGTGACCAATGTTATAGTTTACTCTATTGTTATAAATATATTTTTAT
1 TTGAGTGACCAATGTTATAGTTTACTCTATTGTTATAAATATATTTTTAT
91394992 CTTCTCAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.30, C:0.08, G:0.12, T:0.50
Consensus pattern (51 bp):
TTGAGTGACCAATGTTATAGTTTACTCTATTGTTATAAATATATTTTTATT
Found at i:91401446 original size:22 final size:21
Alignment explanation
Indices: 91401421--91401462 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
91401411 ATTTTAAATC
91401421 TAATAAATAATAATATTAATTG
1 TAATAAATAATAATA-TAATTG
*
91401443 TAATAAGTAATAATATAATT
1 TAATAAATAATAATATAATT
91401463 ATATACTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
TAATAAATAATAATATAATTG
Found at i:91417005 original size:20 final size:22
Alignment explanation
Indices: 91416965--91417006 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
91416955 TTTAGTCATA
*
91416965 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
91416987 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
91417007 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:91417043 original size:27 final size:27
Alignment explanation
Indices: 91417013--91417072 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
91417003 ATTTCAATTT
*
91417013 TATTTTAATAATAA-ATTTTAAAAATAA
1 TATTTTAAAAATAATATTTT-AAAATAA
*
91417040 TATTTTAAAAATAATATTTTTAAATAA
1 TATTTTAAAAATAATATTTTAAAATAA
91417067 TATTTT
1 TATTTT
91417073 TCACATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.83
28 5 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
TATTTTAAAAATAATATTTTAAAATAA
Found at i:91417046 original size:14 final size:14
Alignment explanation
Indices: 91417013--91417072 Score: 88
Period size: 13 Copynumber: 4.4 Consensus size: 14
91417003 ATTTCAATTT
*
91417013 TATTTTAATAATAA
1 TATTTTAAAAATAA
91417027 -ATTTTAAAAATAA
1 TATTTTAAAAATAA
91417040 TATTTTAAAAATAA
1 TATTTTAAAAATAA
*
91417054 TATTTT-TAAATAA
1 TATTTTAAAAATAA
91417067 TATTTT
1 TATTTT
91417073 TCACATATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
13 24 0.56
14 19 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TATTTTAAAAATAA
Found at i:91417073 original size:14 final size:14
Alignment explanation
Indices: 91417015--91417073 Score: 77
Period size: 14 Copynumber: 4.3 Consensus size: 14
91417005 TTCAATTTTA
91417015 TTTTAATAATAA-AT
1 TTTTAA-AATAATAT
*
91417029 TTTAAAAATAATAT
1 TTTTAAAATAATAT
*
91417043 TTTAAAAATAATAT
1 TTTTAAAATAATAT
91417057 TTTT-AAATAATAT
1 TTTTAAAATAATAT
91417070 TTTT
1 TTTT
91417074 CACATATTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
13 18 0.43
14 24 0.57
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TTTTAAAATAATAT
Found at i:91417108 original size:49 final size:48
Alignment explanation
Indices: 91417051--91417146 Score: 117
Period size: 49 Copynumber: 2.0 Consensus size: 48
91417041 ATTTTAAAAA
*
91417051 TAATATTTTTA-AAT-AATATTT-TTCACATATTATTAAAAATATTCAATAT
1 TAATATTTTAATAATAAATATTTATT-ACA-ATTA-TAAAAATATT-AATAT
*
91417100 TAATATTTTAATAATAAATATTTATTACAATTATAAATATATTAATA
1 TAATATTTTAATAATAAATATTTATTACAATTATAAAAATATTAATA
91417147 ATAAATGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
48 4 0.10
49 19 0.45
50 7 0.17
51 10 0.24
52 2 0.05
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (48 bp):
TAATATTTTAATAATAAATATTTATTACAATTATAAAAATATTAATAT
Found at i:91419637 original size:9 final size:10
Alignment explanation
Indices: 91419615--91419655 Score: 50
Period size: 9 Copynumber: 4.3 Consensus size: 10
91419605 TTCCTTTCCA
*
91419615 GCTCACTTTT
1 GCTCACTTTG
91419625 GCTC-CTTTG
1 GCTCACTTTG
*
91419634 GCTCACTTTT
1 GCTCACTTTG
91419644 GCTC-CTTTG
1 GCTCACTTTG
91419653 GCT
1 GCT
91419656 AACCCTTCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
9 15 0.56
10 12 0.44
ACGTcount: A:0.05, C:0.32, G:0.17, T:0.46
Consensus pattern (10 bp):
GCTCACTTTG
Found at i:91419639 original size:19 final size:19
Alignment explanation
Indices: 91419615--91419655 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
91419605 TTCCTTTCCA
91419615 GCTCACTTTTGCTCCTTTG
1 GCTCACTTTTGCTCCTTTG
91419634 GCTCACTTTTGCTCCTTTG
1 GCTCACTTTTGCTCCTTTG
91419653 GCT
1 GCT
91419656 AACCCTTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.05, C:0.32, G:0.17, T:0.46
Consensus pattern (19 bp):
GCTCACTTTTGCTCCTTTG
Found at i:91424609 original size:13 final size:13
Alignment explanation
Indices: 91424587--91424619 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
91424577 AAGGGTTTGT
91424587 TTAT-TAAACTAA
1 TTATCTAAACTAA
91424599 TTATCTAAACTAA
1 TTATCTAAACTAA
*
91424612 TTAACTAA
1 TTATCTAA
91424620 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:91427517 original size:6 final size:6
Alignment explanation
Indices: 91427470--91427510 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
91427460 CTTTATAACG
*
91427470 AAAAAT AAACAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
91427511 AATAAAAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:91432892 original size:13 final size:13
Alignment explanation
Indices: 91432870--91432902 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
91432860 AAGGGTTTGT
91432870 TTAT-TAAACTAA
1 TTATCTAAACTAA
91432882 TTATCTAAACTAA
1 TTATCTAAACTAA
*
91432895 TTAACTAA
1 TTATCTAA
91432903 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:91435382 original size:7 final size:7
Alignment explanation
Indices: 91435370--91435394 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
91435360 AGTAAATAGA
91435370 TATTTAT
1 TATTTAT
91435377 TATTTAT
1 TATTTAT
91435384 TATTTAT
1 TATTTAT
91435391 TATT
1 TATT
91435395 AAGTAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTTAT
Found at i:91435429 original size:34 final size:35
Alignment explanation
Indices: 91435352--91435429 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 35
91435342 TAAATTGCTT
* *
91435352 ATTAT-TTAAGTAAATAGATATTTATTATTTATTA
1 ATTATATTAAGTAAATAGATATTTATTATTAAATA
*
91435386 TTTATTATTAAGT-AA-AGATATTTATTAATTAAATA
1 ATTA-TATTAAGTAAATAGATATTTATT-ATTAAATA
91435421 ATTATATTA
1 ATTATATTA
91435430 TAAGATTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
34 19 0.51
35 12 0.32
36 6 0.16
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (35 bp):
ATTATATTAAGTAAATAGATATTTATTATTAAATA
Found at i:91436724 original size:21 final size:20
Alignment explanation
Indices: 91436698--91436755 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 20
91436688 TTGATATTTT
91436698 TTGAATAACTAAATTACTGTA
1 TTGAATAACTAAA-TACTGTA
** *
91436719 TTGAATAA-TTGATAGT-TA
1 TTGAATAACTAAATACTGTA
91436737 TTGAATAACTAAACTACTG
1 TTGAATAACTAAA-TACTG
91436756 CACTGAATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
18 10 0.36
19 5 0.18
20 5 0.18
21 8 0.29
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (20 bp):
TTGAATAACTAAATACTGTA
Found at i:91436727 original size:39 final size:39
Alignment explanation
Indices: 91436668--91436814 Score: 186
Period size: 39 Copynumber: 3.8 Consensus size: 39
91436658 TTAATAGGGG
* *
91436668 TAAACTACTGTACTGAATAATTGATATTTTTTGAATAAC
1 TAAACTACTGTACTGAATAATTGATAGTTATTGAATAAC
* *
91436707 TAAATTACTGTATTGAATAATTGATAGTTATTGAATAAC
1 TAAACTACTGTACTGAATAATTGATAGTTATTGAATAAC
* * * *
91436746 TAAACTACTGCACTGAATATTTGATAGTTACTGAATGAC
1 TAAACTACTGTACTGAATAATTGATAGTTATTGAATAAC
* * * *
91436785 TAAATTACTATACTGAATAACTGATTGTTA
1 TAAACTACTGTACTGAATAATTGATAGTTA
91436815 CTGATTAAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (39 bp):
TAAACTACTGTACTGAATAATTGATAGTTATTGAATAAC
Found at i:91437821 original size:24 final size:24
Alignment explanation
Indices: 91437791--91437847 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
91437781 GGTTCTCCGA
91437791 AGCTTCCTGATATT-GGCTCGTATG
1 AGCTTCCTGAT-TTAGGCTCGTATG
* *
91437815 AGCTTCC-CATTTACGGCTCTTATG
1 AGCTTCCTGATTTA-GGCTCGTATG
91437839 AGCTTCCTG
1 AGCTTCCTG
91437848 TTACATGGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 2 0.07
23 2 0.07
24 23 0.85
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (24 bp):
AGCTTCCTGATTTAGGCTCGTATG
Found at i:91441233 original size:43 final size:43
Alignment explanation
Indices: 91441185--91441343 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
91441175 AGCTCGTACA
* * *
91441185 ATGCCAACGTCCCAGACGTGGTCTTATATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * * *
91441228 ATGCC-ACAGTCCCAGATAGGGTTTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * *
91441270 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATCA-AATATCG
* *
91441314 ATGCCAACATCCCAGACATGGTATTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
91441344 AGAACACATA
Statistics
Matches: 94, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 27 0.29
43 38 0.40
44 29 0.31
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCG
Found at i:91443903 original size:32 final size:33
Alignment explanation
Indices: 91443833--91443904 Score: 78
Period size: 32 Copynumber: 2.2 Consensus size: 33
91443823 ATTCACATAT
*
91443833 CTTAAATAGATATAACCATTCAAGTAAGACCTTA
1 CTTAAATAAATATAACCATTCAAGTAAGA-CTTA
* * *
91443867 --TAAATAAATATAACTATTCAATTAATA-TTA
1 CTTAAATAAATATAACCATTCAAGTAAGACTTA
91443897 CTTAAATA
1 CTTAAATA
91443905 GTTAGAATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
30 3 0.09
32 29 0.91
ACGTcount: A:0.49, C:0.12, G:0.04, T:0.35
Consensus pattern (33 bp):
CTTAAATAAATATAACCATTCAAGTAAGACTTA
Found at i:91448635 original size:28 final size:28
Alignment explanation
Indices: 91448603--91448686 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
91448593 AACTTCGATC
91448603 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
91448631 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
*
91448653 ACGTGTGTAATACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
91448681 ACGTGT
1 ACGTGT
91448687 ACCGGATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 1 0.02
22 8 0.20
23 2 0.05
24 3 0.07
25 6 0.15
26 3 0.07
27 2 0.05
28 14 0.34
29 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:91448676 original size:50 final size:49
Alignment explanation
Indices: 91448555--91448744 Score: 227
Period size: 50 Copynumber: 3.8 Consensus size: 49
91448545 TGAGGTCGCA
* * * *
91448555 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCACG
* **
91448606 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * * *
91448656 TGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
91448705 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
91448745 CCTTGTCTAC
Statistics
Matches: 119, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
49 40 0.34
50 45 0.38
51 34 0.29
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:91451729 original size:14 final size:13
Alignment explanation
Indices: 91451704--91451772 Score: 52
Period size: 14 Copynumber: 4.8 Consensus size: 13
91451694 TCGTATCTTG
91451704 GGTTTCTTTATTCT
1 GGTTT-TTTATTCT
91451718 GGATTTTTTATTCT
1 GG-TTTTTTATTCT
91451732 AGGTTTTTCTA-TCTT
1 -GGTTTTT-TATTC-T
91451747 GGATTTCTTTATTC-
1 GG-TTT-TTTATTCT
91451761 GGTTTTCTTATT
1 GGTTTT-TTATT
91451773 ATCTTTATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 17
0.73 0.00 0.27
Matches are distributed among these distances:
12 1 0.02
13 8 0.17
14 21 0.45
15 13 0.28
16 4 0.09
ACGTcount: A:0.12, C:0.12, G:0.14, T:0.62
Consensus pattern (13 bp):
GGTTTTTTATTCT
Found at i:91456665 original size:29 final size:29
Alignment explanation
Indices: 91456631--91456704 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
91456621 CAAAAATAAT
*
91456631 ACAAAG-ATGCACTGAAGTGCAATAACAAA
1 ACAAAGTA-GCACCGAAGTGCAATAACAAA
* *
91456660 GCAAAGTAGCACCGAAGTGCAATACCAAA
1 ACAAAGTAGCACCGAAGTGCAATAACAAA
*
91456689 ACAAAGTAGCATCGAA
1 ACAAAGTAGCACCGAA
91456705 ATAGAGTGCA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 38 0.97
30 1 0.03
ACGTcount: A:0.49, C:0.20, G:0.19, T:0.12
Consensus pattern (29 bp):
ACAAAGTAGCACCGAAGTGCAATAACAAA
Found at i:91460078 original size:40 final size:41
Alignment explanation
Indices: 91460023--91460202 Score: 206
Period size: 40 Copynumber: 4.4 Consensus size: 41
91460013 CAATTATGTT
* *
91460023 TGGCACTTAGTGTGCGAATTGGAATAGCTTCGGCTAT-ATA
1 TGGCACTTAGTGTGCGAATTAGAATAGCTTCAGCTATGATA
*
91460063 TGGCACTTAGTGTGCGAATCAGAATAGCTTCAGCTAT-ATA
1 TGGCACTTAGTGTGCGAATTAGAATAGCTTCAGCTATGATA
* *
91460103 TGGCACTTAGTGTGCAAGAATGAG-ATAGCTTCGGCTATGA-A
1 TGGCACTTAGTGTGC--GAATTAGAATAGCTTCAGCTATGATA
* * * * * *
91460144 AGGCACTTAGTATGCGAGATTATAATAGCTTTAGCTATGCTT
1 TGGCACTTAGTGTGCGA-ATTAGAATAGCTTCAGCTATGATA
91460186 TGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
91460203 GATATCGAGT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 2 0.02
40 55 0.46
41 40 0.34
42 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (41 bp):
TGGCACTTAGTGTGCGAATTAGAATAGCTTCAGCTATGATA
Found at i:91460134 original size:81 final size:82
Alignment explanation
Indices: 91460023--91460202 Score: 226
Period size: 81 Copynumber: 2.2 Consensus size: 82
91460013 CAATTATGTT
* *
91460023 TGGCACTTAGTGTGCGAATTGGAATAGCTTCGGCTAT-ATATGGCACTTAGTGTGCGA-ATCAGA
1 TGGCACTTAGTGTGCGAATTGGAATAGCTTCGGCTATGA-AAGGCACTTAGTATGCGAGATCAGA
91460086 ATAGCTTCAGCTAT-ATA
65 ATAGCTTCAGCTATGATA
*
91460103 TGGCACTTAGTGTGCAAGAA-T-GAGATAGCTTCGGCTATGAAAGGCACTTAGTATGCGAGATTA
1 TGGCACTTAGTGTGC--GAATTGGA-ATAGCTTCGGCTATGAAAGGCACTTAGTATGCGAGATCA
* * * *
91460166 TAATAGCTTTAGCTATGCTT
63 GAATAGCTTCAGCTATGATA
91460186 TGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
91460203 GATATCGAGT
Statistics
Matches: 87, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
80 17 0.20
81 33 0.38
82 21 0.24
83 16 0.18
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (82 bp):
TGGCACTTAGTGTGCGAATTGGAATAGCTTCGGCTATGAAAGGCACTTAGTATGCGAGATCAGAA
TAGCTTCAGCTATGATA
Found at i:91460321 original size:12 final size:12
Alignment explanation
Indices: 91460304--91460328 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91460294 AGAAGTTATG
91460304 AACTTGTTCATA
1 AACTTGTTCATA
91460316 AACTTGTTCATA
1 AACTTGTTCATA
91460328 A
1 A
91460329 GCATGATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (12 bp):
AACTTGTTCATA
Found at i:91466691 original size:35 final size:35
Alignment explanation
Indices: 91466599--91466765 Score: 183
Period size: 35 Copynumber: 4.6 Consensus size: 35
91466589 CATGGCAAAG
*
91466599 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
* *
91466634 TGTGAAATGTAGGTATGATATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
*
91466669 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTAAGT
1 TGTGAAATGTAGGTATGGTA-T-T---ATCCATACTGAGT
** * *
91466709 TAAGAAATGTAGGTATGGCATT-TCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTAT-CCATACTGAGT
**
91466744 TGAAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
91466766 TCAATGAGGA
Statistics
Matches: 112, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.71
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 28 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
Found at i:91466723 original size:75 final size:75
Alignment explanation
Indices: 91466599--91466769 Score: 203
Period size: 75 Copynumber: 2.4 Consensus size: 75
91466589 CATGGCAAAG
* ** *
91466599 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGATATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTAAGTTAAGAAATGTAGGTATGACATT-TC
*
91466658 CCATACTGAGC
65 CCATACCGAGC
*
91466669 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTAAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTAAGTTAAGAAATGTAGGTATGACATTTCC
*
91466734 CATACCGAGT
66 CATACCGAGC
**
91466744 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
91466770 TGAGGAAAAC
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 59 0.69
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTAAGTTAAGAAATGTAGGTATGACATTTCC
CATACCGAGC
Found at i:91491746 original size:3 final size:3
Alignment explanation
Indices: 91491738--91491813 Score: 57
Period size: 3 Copynumber: 25.3 Consensus size: 3
91491728 TTAATTTTAA
* * *
91491738 TAT TAT TAT TAT TAC TAT TAT CTTT TAT TAT TAT CT-C TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT -TAT TAT TAT TAT
* * * *
91491784 TAA CA- TAT TAT TAT TCT TAT TAT TAC TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
91491814 TTTGTTATCT
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
2 2 0.04
3 51 0.91
4 3 0.05
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:91491907 original size:10 final size:9
Alignment explanation
Indices: 91491879--91491905 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
91491869 GTTTACTTTC
91491879 AAATTTTTT
1 AAATTTTTT
91491888 AAATTTTTT
1 AAATTTTTT
91491897 AAATTTTTT
1 AAATTTTTT
91491906 TACAAGCTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
AAATTTTTT
Found at i:91491929 original size:9 final size:9
Alignment explanation
Indices: 91491915--91491943 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
91491905 TTACAAGCTG
91491915 TTTTATTTA
1 TTTTATTTA
91491924 TTTTATTT-
1 TTTTATTTA
91491932 TTTTATTTA
1 TTTTATTTA
91491941 TTT
1 TTT
91491944 ACCTATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTATTTA
Found at i:91492682 original size:129 final size:128
Alignment explanation
Indices: 91492434--91492684 Score: 283
Period size: 129 Copynumber: 1.9 Consensus size: 128
91492424 TTTCAATAAC
* * *
91492434 AAGGCAATGTTTCGCATTTAGAAAATTCGAGAAATCGTACCCTAACTTACGGGGTCTCGATTTTC
1 AAGGCAATATTTCGCATTTAGAAAACTCGAGAAATCGTACCCTAACTTACGGGGTCTCAATTTTC
* * * * ** *
91492499 TTGTTGAACCTAAATAGCCGAGTATCCTTTCAAATTTCAAAATACATGATTTTTAAATAAGATA
66 TCGTTGAACCTAAACAACCGAATATCCTTTCAAAAATCAAAATACA-GAATTTTAAATAAGATA
* * *
91492563 AAGGCAATA-TTCTGCATTTAG-AAACTCGAGAAGGTCGTGCCCTAACTTACGGGGTTTCAATTT
1 AAGGCAATATTTC-GCATTTAGAAAACTCGAGAA-ATCGTACCCTAACTTACGGGGTCTCAATTT
* * * *
91492626 TCCTCGTTGAATCTAAACAACCGAATATCCTTTTTAAAAATCAAAGTGC-GAATTTTAAA
64 T-CTCGTTGAACCTAAACAACCGAATATCC-TTTCAAAAATCAAAATACAGAATTTTAAA
91492685 ATAAAACAAT
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
128 13 0.13
129 52 0.51
130 23 0.23
131 13 0.13
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (128 bp):
AAGGCAATATTTCGCATTTAGAAAACTCGAGAAATCGTACCCTAACTTACGGGGTCTCAATTTTC
TCGTTGAACCTAAACAACCGAATATCCTTTCAAAAATCAAAATACAGAATTTTAAATAAGATA
Found at i:91494532 original size:3 final size:3
Alignment explanation
Indices: 91494521--91494600 Score: 51
Period size: 3 Copynumber: 27.7 Consensus size: 3
91494511 AAAAAATGAT
** * * *
91494521 TTA TT- TTA TTA TCG TTA TTA CTA TTA CTA TTA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
91494568 TT- TTG TCT- TTG CTA TT- TTA TTA TTA TTA TTA TT
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TT
91494601 TTAAAAAAAA
Statistics
Matches: 59, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
2 7 0.12
3 51 0.86
4 1 0.02
ACGTcount: A:0.25, C:0.07, G:0.04, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:91504969 original size:48 final size:48
Alignment explanation
Indices: 91504880--91505068 Score: 211
Period size: 48 Copynumber: 3.9 Consensus size: 48
91504870 TGATACTAGG
* * * *
91504880 GTTATGTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGACTTT
1 GTTATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCTTT
* * * *
91504928 GTTACGAGAGCTAGTGTAAGACCATGTCTAGGACATAGCATCGGCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCTTT
** * * * *
91504976 AATATGTGAGCTAATGTAAGACTATGTTTA-GAGCATGGCATCGGCTTT
1 GTTATGAGAGCTAGTGTAAGACCATGTCTAGGA-CATGGCATCGGCTTT
*
91505024 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GTTATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC
91505069 ATCTTACCCT
Statistics
Matches: 113, Mismatches: 25, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
47 2 0.02
48 106 0.94
49 5 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
GTTATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCTTT
Found at i:91505046 original size:96 final size:96
Alignment explanation
Indices: 91504882--91505068 Score: 293
Period size: 96 Copynumber: 1.9 Consensus size: 96
91504872 ATACTAGGGT
* *
91504882 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACTTTGTTACGAGAGCTAGTGTAA
1 TATGTGAGCCAATGTAAGACCATGTTTAGAACATGGCATCGACTTTGTTACGAGAGCTAGTGTAA
91504947 GACCATGTCTAGGACATAGCATCGGCCTCAA
66 GACCATGTCTAGGACATAGCATCGGCCTCAA
* * * * *
91504978 TATGTGAGCTAATGTAAGACTATGTTTAGAGCATGGCATCGGCTTTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAATGTAAGACCATGTTTAGAACATGGCATCGACTTTGTTACGAGAGCTAGTGTAA
* *
91505043 GACCATGTCTGGGACATGGCATCGGC
66 GACCATGTCTAGGACATAGCATCGGC
91505069 ATCTTACCCT
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 82 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (96 bp):
TATGTGAGCCAATGTAAGACCATGTTTAGAACATGGCATCGACTTTGTTACGAGAGCTAGTGTAA
GACCATGTCTAGGACATAGCATCGGCCTCAA
Found at i:91509167 original size:75 final size:76
Alignment explanation
Indices: 91509108--91509278 Score: 274
Period size: 75 Copynumber: 2.3 Consensus size: 76
91509098 GGCGCAATTA
* *
91509108 CAGTTGGTTCATCCAACTAGAGCTAGGATCACAATTATTATCGTCGGTATATCCGACTAGCACTG
1 CAGTTGGTTTATCCAACTAGAGCTAGGATCACAATTACTATCGTCGGTATATCCGACTAGCACTG
91509173 GGTGCAAATAT
66 GGTGCAAATAT
* * * *
91509184 C-GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTACTATCGTAGGTATACCCGACTAGCACTG
1 CAGTTGGTTTATCCAACTAGAGCTAGGATCACAATTACTATCGTCGGTATATCCGACTAGCACTG
91509248 GGTGCAAATAT
66 GGTGCAAATAT
91509259 CA-TTGGTTTATCCAACTAGA
1 CAGTTGGTTTATCCAACTAGA
91509279 CTGGGCTTAC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
75 87 0.99
76 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (76 bp):
CAGTTGGTTTATCCAACTAGAGCTAGGATCACAATTACTATCGTCGGTATATCCGACTAGCACTG
GGTGCAAATAT
Found at i:91509196 original size:35 final size:34
Alignment explanation
Indices: 91509146--91509283 Score: 123
Period size: 35 Copynumber: 3.8 Consensus size: 34
91509136 TCACAATTAT
* *
91509146 TATCGTCGGTATATCCGACTAGCACTGGGTGCAAA
1 TATCGTTGGTATATCCAACTAG-ACTGGGTGCAAA
* *
91509181 TATCGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTA
1 TATCGTTGGTATATCCAACTAGA-CTGGG-T-GCAA--A
* * *
91509220 CTATCGTAGGTATACCCGACTAGCACTGGGTGCAAA
1 -TATCGTTGGTATATCCAACTAG-ACTGGGTGCAAA
* *
91509256 TATCATTGGTTTATCCAACTAGACTGGG
1 TATCGTTGGTATATCCAACTAGACTGGG
91509284 CTTACATTTA
Statistics
Matches: 82, Mismatches: 14, Indels: 15
0.74 0.13 0.14
Matches are distributed among these distances:
34 7 0.09
35 41 0.50
36 2 0.02
37 3 0.04
38 3 0.04
39 2 0.02
40 23 0.28
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (34 bp):
TATCGTTGGTATATCCAACTAGACTGGGTGCAAA
Found at i:91509242 original size:40 final size:38
Alignment explanation
Indices: 91509118--91509250 Score: 105
Period size: 40 Copynumber: 3.5 Consensus size: 38
91509108 CAGTTGGTTC
* * *
91509118 ATCCAACTAGAGCTAGGATCACAATTATTATCGTCGGTAT
1 ATCCGACTAGAGCT-GGGTCACAATTA-TATCGTAGGTAT
* * *
91509158 ATCCGACTAGCA-CTGGGT-GCAA--ATATCGTTGGTTT
1 ATCCGACTAG-AGCTGGGTCACAATTATATCGTAGGTAT
*
91509193 ATCCAACTAGAGCTGGGCTCACAATTACTATCGTAGGTAT
1 ATCCGACTAGAGCTGGG-TCACAATTA-TATCGTAGGTAT
*
91509233 ACCCGACTAGCA-CTGGGT
1 ATCCGACTAG-AGCTGGGT
91509251 GCAAATATCA
Statistics
Matches: 74, Mismatches: 11, Indels: 17
0.73 0.11 0.17
Matches are distributed among these distances:
34 1 0.01
35 24 0.32
36 2 0.03
37 3 0.04
38 3 0.04
39 5 0.07
40 34 0.46
41 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (38 bp):
ATCCGACTAGAGCTGGGTCACAATTATATCGTAGGTAT
Found at i:91513781 original size:17 final size:16
Alignment explanation
Indices: 91513713--91513778 Score: 55
Period size: 17 Copynumber: 4.1 Consensus size: 16
91513703 TAATCACATT
* *
91513713 AATATTAAATTAATAA
1 AATATTAAATTTATTA
*
91513729 AATATT--ATCTAGTTA
1 AATATTAAATTTA-TTA
* *
91513744 AATATTTAATTTAATTT
1 AATATTAAATTT-ATTA
91513761 AATATTAAATTTATTA
1 AATATTAAATTTATTA
91513777 AA
1 AA
91513779 ATAATATTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
14 3 0.08
15 8 0.21
16 11 0.28
17 16 0.41
18 1 0.03
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (16 bp):
AATATTAAATTTATTA
Found at i:91514164 original size:41 final size:41
Alignment explanation
Indices: 91514090--91514309 Score: 316
Period size: 41 Copynumber: 5.4 Consensus size: 41
91514080 CATTTTACCA
* * * *
91514090 AAAACGACGCTAAAAA-CAGAGCAATAACGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
91514130 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
* *
91514171 AAAACGACGCTAAAAATAAGAGCATTAGTGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
* * ** * *
91514212 AAAGCGCCACTAAAAATCGGAGCAATAGCGGCACTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
*
91514253 AAAGCGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
91514294 AAAACGCCGCTAAAAA
1 AAAACGCCGCTAAAAA
91514310 GTTTAGGGTT
Statistics
Matches: 159, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 15 0.09
41 144 0.91
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
Found at i:91514228 original size:82 final size:82
Alignment explanation
Indices: 91514059--91514309 Score: 328
Period size: 82 Copynumber: 3.1 Consensus size: 82
91514049 AAAAAAATTG
*** * * *
91514059 TAAAACAT-AGAGCAATAGCGGCA-TTTTACCAAAAACGACGCTAAAAA-CAGAGCAATAACGGC
1 TAAAA-ATAAGAGCAATAGCGGCACTTTT-GGTAAAACGACGCTAAAAATAAGAGCATTAGCGGC
91514121 GCTTTTGGTAAAACGCCGC
64 GCTTTTGGTAAAACGCCGC
* * *
91514140 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGACGCTAAAAATAAGAGCATTAGTGGCGC
1 TAAAAATAAGAGCAATAGCGGCACTTTTGGTAAAACGACGCTAAAAATAAGAGCATTAGCGGCGC
* *
91514205 TTTTGGTAAAGCGCCAC
66 TTTTGGTAAAACGCCGC
** * *
91514222 TAAAAATCGGAGCAATAGCGGCACTTTTGGTAAAGCGCCGCTAAAAATAAGAGCATTAGCGGCGC
1 TAAAAATAAGAGCAATAGCGGCACTTTTGGTAAAACGACGCTAAAAATAAGAGCATTAGCGGCGC
91514287 TTTTGGTAAAACGCCGC
66 TTTTGGTAAAACGCCGC
91514304 TAAAAA
1 TAAAAA
91514310 GTTTAGGGTT
Statistics
Matches: 147, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 2 0.01
81 34 0.23
82 111 0.76
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (82 bp):
TAAAAATAAGAGCAATAGCGGCACTTTTGGTAAAACGACGCTAAAAATAAGAGCATTAGCGGCGC
TTTTGGTAAAACGCCGC
Found at i:91514407 original size:21 final size:22
Alignment explanation
Indices: 91514383--91514426 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
91514373 GGTTTATGTA
*
91514383 TTATGGTTTAAGGGTT-GGGGT
1 TTATGATTTAAGGGTTAGGGGT
91514404 TTATGATTTAAGGGTTAGGGGT
1 TTATGATTTAAGGGTTAGGGGT
91514426 T
1 T
91514427 AGGGGTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43
Consensus pattern (22 bp):
TTATGATTTAAGGGTTAGGGGT
Found at i:91514682 original size:21 final size:20
Alignment explanation
Indices: 91514657--91514705 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
91514647 TATGGCTAGG
*
91514657 GGATATAGTTTAGGGTTTAAA
1 GGATATAGTTTAGGGATT-AA
*
91514678 GGATATACTTTAGGGATTAA
1 GGATATAGTTTAGGGATTAA
*
91514698 GGTTATAG
1 GGATATAG
91514706 GGATATAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.33, C:0.02, G:0.29, T:0.37
Consensus pattern (20 bp):
GGATATAGTTTAGGGATTAA
Found at i:91514704 original size:20 final size:21
Alignment explanation
Indices: 91514657--91514697 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
91514647 TATGGCTAGG
* *
91514657 GGATATAGTTTAGGGTTTAAA
1 GGATATACTTTAGGGATTAAA
91514678 GGATATACTTTAGGGATTAA
1 GGATATACTTTAGGGATTAA
91514698 GGTTATAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.02, G:0.27, T:0.37
Consensus pattern (21 bp):
GGATATACTTTAGGGATTAAA
Found at i:91517981 original size:183 final size:183
Alignment explanation
Indices: 91517673--91518041 Score: 693
Period size: 183 Copynumber: 2.0 Consensus size: 183
91517663 GATATAGTTC
*
91517673 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAATTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAATTACTGCTTCCTGCTCCTCCTGCA
91517738 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
91517803 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
* * *
91517856 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAATTACTGCTTCCTGCTCCTCCTGCA
91517921 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
91517986 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
91518039 CAT
1 CAT
91518042 CTGTTCTAGG
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 181 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (183 bp):
CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAATTACTGCTTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:91519442 original size:356 final size:357
Alignment explanation
Indices: 91518482--91519717 Score: 2377
Period size: 356 Copynumber: 3.5 Consensus size: 357
91518472 CTTGTCCATT
* *
91518482 AAAATTACAACAATGGATGACTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
91518547 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
91518612 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
91518677 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTAT
196 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTAT
*
91518742 ATTATTATATTCAAATTACTATTTTTTACATTAATAATGTTTGATTTTAATATTTAATATTTTTA
261 ATTATTATATTCAAATTACTATTTTTTGCATTAATAATGTTTGATTTTAATATTTAATATTTTTA
91518807 AATGTCTTTAAAAGTTATAACTAATTTTTATC
326 AATGTCTTTAAAAGTTATAACTAATTTTTATC
*
91518839 AAAATTACAACAATGACTGACCTTCTCTCCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
1 AAAATTACAACAATGGCTGACCTTCTCT-CCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
91518904 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
65 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
*
91518969 TGTAACAACGCCACGTATGATGAATCTTTAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAG
130 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAG
*
91519034 CTCATTTACTAGTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTA
195 CTCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTA
91519099 TATTATTATATTCAAATTACTATTTTTTGCATTAATAATGTTTGATTTTAATATTTAATATTTTT
260 TATTATTATATTCAAATTACTATTTTTTGCATTAATAATGTTTGATTTTAATATTTAATATTTTT
91519164 AAATGTCTTTAAAAGTTATAACTAATTTTTATC
325 AAATGTCTTTAAAAGTTATAACTAATTTTTATC
91519197 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
91519262 -TAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
91519326 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
91519391 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTAT
196 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTAT
91519456 ATTATTATATTCAAATTACTATTTTTTGCATTAATAATGTTTGATTTTAATATTTAATATTTTTA
261 ATTATTATATTCAAATTACTATTTTTTGCATTAATAATGTTTGATTTTAATATTTAATATTTTTA
*
91519521 AATGTCTTTAAATGTTATAACTAATTTTTATC
326 AATGTCTTTAAAAGTTATAACTAATTTTTATC
91519553 AAAATTACAACAATGGCTG-CCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
91519617 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
*
91519682 GTAACAACGCCGCGTATGATGAATCTTAAAAAATTC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTC
91519718 TCCGTTTTAT
Statistics
Matches: 866, Mismatches: 11, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
355 45 0.05
356 406 0.47
357 62 0.07
358 353 0.41
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (357 bp):
AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTAT
ATTATTATATTCAAATTACTATTTTTTGCATTAATAATGTTTGATTTTAATATTTAATATTTTTA
AATGTCTTTAAAAGTTATAACTAATTTTTATC
Found at i:91519971 original size:15 final size:15
Alignment explanation
Indices: 91519927--91519982 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
91519917 AACGACATGT
*
91519927 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
91519943 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
91519956 ATATTATTTAATTAA
1 ATATTATTTAATTAA
91519971 ATATTATTTAAT
1 ATATTATTTAAT
91519983 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 16 0.46
16 4 0.11
17 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:91520127 original size:9 final size:9
Alignment explanation
Indices: 91520087--91520276 Score: 107
Period size: 9 Copynumber: 20.6 Consensus size: 9
91520077 TATTTGATAT
*
91520087 CATAATTTA
1 CATAACTTA
*
91520096 TATAACTTA
1 CATAACTTA
* *
91520105 CAAAACGTA
1 CATAACTTA
91520114 CATAACTTA
1 CATAACTTA
*
91520123 TATAACTTA
1 CATAACTTA
* *
91520132 GATAA-ATA
1 CATAACTTA
*
91520140 TATAACTTA
1 CATAACTTA
91520149 CATAACTTA
1 CATAACTTA
91520158 CATAATACTTA
1 CAT-A-ACTTA
* *
91520169 AATATATTTTATA
1 CATA-A--CT-TA
*
91520182 TCATAATTTA
1 -CATAACTTA
91520192 CATAACTTA
1 CATAACTTA
91520201 CATAACTTA
1 CATAACTTA
*
91520210 TATAACTTA
1 CATAACTTA
* *
91520219 GATAA-ATA
1 CATAACTTA
* *
91520227 TATAATTTA
1 CATAACTTA
*
91520236 CATAA-ATA
1 CATAACTTA
* * *
91520244 TATATCATA
1 CATAACTTA
91520253 TCATAACTTA
1 -CATAACTTA
91520263 CATAACTTA
1 CATAACTTA
91520272 CATAA
1 CATAA
91520277 TACTTAAATA
Statistics
Matches: 142, Mismatches: 29, Indels: 20
0.74 0.15 0.10
Matches are distributed among these distances:
8 17 0.12
9 97 0.68
10 12 0.08
11 9 0.06
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:91520143 original size:17 final size:17
Alignment explanation
Indices: 91520121--91520276 Score: 93
Period size: 17 Copynumber: 8.9 Consensus size: 17
91520111 GTACATAACT
*
91520121 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
91520138 TATATAACTTACATAACT
1 TATATAACTTACATAA-A
* *
91520156 TACATAA--TACTTAAA
1 TATATAACTTACATAAA
** *
91520171 TATAT-TTTATATCATAATT
1 TATATAACT-TA-CATAA-A
* *
91520190 TACATAACTTACATAACT
1 TATATAACTTACATAA-A
*
91520208 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
91520225 TATATAATTTACATAAA
1 TATATAACTTACATAAA
* * *
91520242 TATATATCATATCATAACT
1 TATATAACTTA-CATAA-A
*
91520261 TACATAACTTACATAA
1 TATATAACTTACATAA
91520277 TACTTAAATA
Statistics
Matches: 105, Mismatches: 25, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
15 4 0.04
16 6 0.06
17 40 0.38
18 40 0.38
19 14 0.13
20 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.39
Consensus pattern (17 bp):
TATATAACTTACATAAA
Found at i:91520258 original size:96 final size:96
Alignment explanation
Indices: 91520060--91520267 Score: 231
Period size: 96 Copynumber: 2.1 Consensus size: 96
91520050 ATAAAAAACT
* *
91520060 TACATAATACATAAATATATTTGATATCATAATTTATATAACTTACAAAACGTACATAACTTATA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACTTAGA
* * * *
91520125 TAACTTAGATAAATATATAACTTACATAACT
66 TAACATAGATAAATACATAACATACATAACA
* * * * *
91520156 TACATAATACTTAAATATATTTTATATCATAATTTACATAACTTACATAACTTATATAACTTAGA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACTTAGA
* * * *
91520221 TAA-ATATATAATTTACATAA-ATATATATCA
66 TAACATAGATAA-ATACATAACATACATAACA
91520251 TATCATAACTTACATAA
1 TA-CATAA--TACATAA
91520268 CTTACATAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
95 14 0.15
96 72 0.78
98 6 0.07
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (96 bp):
TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACTTAGA
TAACATAGATAAATACATAACATACATAACA
Found at i:91525504 original size:13 final size:14
Alignment explanation
Indices: 91525488--91525516 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91525478 TTCTAAATAT
91525488 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
91525501 TTATAATTGTTTAA
1 TTATAATTGTTTAA
91525515 TT
1 TT
91525517 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:91525953 original size:21 final size:21
Alignment explanation
Indices: 91525928--91525989 Score: 106
Period size: 21 Copynumber: 3.0 Consensus size: 21
91525918 TTAGAGCGGA
*
91525928 GGCAGCAGAGAGGGAGGCAGC
1 GGCAGCAGCGAGGGAGGCAGC
*
91525949 GGCAGCAGCGAGAGAGGCAGC
1 GGCAGCAGCGAGGGAGGCAGC
91525970 GGCAGCAGCGAGGGAGGCAG
1 GGCAGCAGCGAGGGAGGCAG
91525990 AGCATAGGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.52, T:0.00
Consensus pattern (21 bp):
GGCAGCAGCGAGGGAGGCAGC
Found at i:91526391 original size:43 final size:43
Alignment explanation
Indices: 91526363--91526487 Score: 250
Period size: 43 Copynumber: 2.9 Consensus size: 43
91526353 TTTGTGGGAA
91526363 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTTCTTC
1 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTTCTTC
91526406 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTTCTTC
1 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTTCTTC
91526449 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTT
1 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTT
91526488 TTTAATAAAC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 82 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTTCTTC
Found at i:91528030 original size:17 final size:18
Alignment explanation
Indices: 91527993--91528032 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
91527983 TGAATAATTT
* *
91527993 AAAATAATATAATATTCA
1 AAAATAATATAATAATAA
91528011 AAAAT-ATATAATAATAA
1 AAAATAATATAATAATAA
91528028 AAAAT
1 AAAAT
91528033 TCAAACAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
AAAATAATATAATAATAA
Found at i:91529685 original size:13 final size:13
Alignment explanation
Indices: 91529667--91529691 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91529657 GCTAAGTCCT
91529667 TAGTTCTATGATA
1 TAGTTCTATGATA
91529680 TAGTTCTATGAT
1 TAGTTCTATGAT
91529692 GTTCGGTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (13 bp):
TAGTTCTATGATA
Found at i:91531357 original size:31 final size:27
Alignment explanation
Indices: 91531315--91531375 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 27
91531305 ATCAAATTTT
91531315 AATTTTAATTTAATCATTTATATTTAAATA
1 AATTTTAATTTAATC--TTATA-TTAAATA
*
91531345 AATTATTAATTTATTCTTATATTAAATA
1 AATT-TTAATTTAATCTTATATTAAATA
91531373 AAT
1 AAT
91531376 ATAATTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 10 0.34
29 5 0.17
30 4 0.14
31 10 0.34
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.52
Consensus pattern (27 bp):
AATTTTAATTTAATCTTATATTAAATA
Found at i:91533854 original size:34 final size:35
Alignment explanation
Indices: 91533796--91533862 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 35
91533786 CAAACACCAG
91533796 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
91533831 AAAATATTTTTCC-G-AAATCATTTTACGGAAAA
1 AAAATA-TTTTCCAGTAAATCATTTTACAGAAAA
91533863 TATTTTACTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 17 0.57
35 7 0.23
36 6 0.20
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:91536293 original size:3 final size:3
Alignment explanation
Indices: 91536278--91536488 Score: 97
Period size: 3 Copynumber: 71.0 Consensus size: 3
91536268 TTTCGTTTCT
* * *
91536278 TTA TTA ATA TTA TTA TTA TTA TT- TCTA ATA TTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
** *
91536323 TTA TTA TTA TTA TTA TTA AAA TTA GTGTA -TA TTT TTA TTA TATA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -T-TA TTA TTA TTA TTA T-TA T-TA
* * * *
91536371 -TA TATA TT- TATA TATA GTA TTA TTT TTAA TTA CT- TTA TT- TTA ATA
1 TTA T-TA TTA T-TA T-TA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
** *
91536416 TTA TTA TTA -TA TTA -TA TT- TGC TT- TT- TGTA TT- TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* *
91536456 TT- TCTA TTA TTA TTA TTA TTA TCA TCA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
91536489 ACATATATAT
Statistics
Matches: 160, Mismatches: 27, Indels: 42
0.70 0.12 0.18
Matches are distributed among these distances:
2 19 0.12
3 122 0.76
4 17 0.11
5 2 0.01
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:91536623 original size:24 final size:22
Alignment explanation
Indices: 91536596--91536651 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
91536586 TTATTATTAT
91536596 TTATTATTTTCTTTATTCTGAATA
1 TTATTATTTT-TTTATTCT-AATA
*
91536620 TTATTGTTATTTTTATTCTAATA
1 TTATTATT-TTTTTATTCTAATA
91536643 TTA-TATTTT
1 TTATTATTTT
91536652 AACATTTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 2 0.07
22 3 0.10
23 7 0.24
24 15 0.52
25 2 0.07
ACGTcount: A:0.25, C:0.05, G:0.04, T:0.66
Consensus pattern (22 bp):
TTATTATTTTTTTATTCTAATA
Found at i:91546712 original size:43 final size:44
Alignment explanation
Indices: 91546624--91546712 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
91546614 TTATGCCTAA
* *
91546624 AACAAAAAAGATTAAGGTGAAAACCCGAAAAGGGCGTCTTGATG
1 AACAAAAAAGATTAAGGTGAAAACCCGAAAAGGGCGTCCTAATG
* * *
91546668 AACAAAAAGGATT-AGGATGAAAACCTG-AGAGGGCGTCCTAATG
1 AACAAAAAAGATTAAGG-TGAAAACCCGAAAAGGGCGTCCTAATG
91546711 AA
1 AA
91546713 GTAAACCTGG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
43 18 0.46
44 21 0.54
ACGTcount: A:0.45, C:0.13, G:0.26, T:0.16
Consensus pattern (44 bp):
AACAAAAAAGATTAAGGTGAAAACCCGAAAAGGGCGTCCTAATG
Found at i:91547582 original size:78 final size:77
Alignment explanation
Indices: 91547494--91547838 Score: 412
Period size: 78 Copynumber: 4.5 Consensus size: 77
91547484 TTCTATTTTT
*
91547494 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTAAGGTATTTTTAGT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTAAGGTATTTTCAGT
*
91547559 TCCTAATTTTCAA
66 TTCTAATTTTC-A
* * * * * * *
91547572 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGATCACGCACTGAGGTATTTTCA-A
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTAAGGTATTTTCAGT
91547636 TT-T-ATGTTTCA
66 TTCTAAT-TTTCA
* * *
91547647 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACACGCTAATGTATTTT-TGT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTAAGGTATTTTCAGT
*
91547711 TTCTATTTTTCA
66 TTCTAATTTTCA
* * * *
91547723 AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACACGTTGAGGTATTTTCAGT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTAAGGTATTTTCAGT
* **
91547788 TTATGTTTTTTCA
66 TTCT-AATTTTCA
* * *
91547801 AAAAAAT-AGACTCATATTGCGAAAAGTGAGTTAAGCCT
1 AAAAAATCA-ACTCATATTGCGAGAGGTGAGTTGAGCCT
91547839 TTTAGTTTCT
Statistics
Matches: 227, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
75 58 0.26
76 66 0.29
77 8 0.04
78 95 0.42
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (77 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTAAGGTATTTTCAGT
TTCTAATTTTCA
Found at i:91547895 original size:57 final size:58
Alignment explanation
Indices: 91547780--91547895 Score: 139
Period size: 57 Copynumber: 2.0 Consensus size: 58
91547770 CGTTGAGGTA
*
91547780 TTTTCAGTTTATGTTTTTTCAAAAAAATAGACTCATATTGCGAAAAGTGAGTTAAGCC
1 TTTTCAGTTTATGTTTTTTCAAAAAAATAGACTCATATTGCGAAAAGTAAGTTAAGCC
* * * * *
91547838 TTTT-AGTTTCTG-TTTTTCAAAAAAATTCA-ACTCATATTGTGAGAGGTAAGTTGAGCC
1 TTTTCAGTTTATGTTTTTTCAAAAAAA-T-AGACTCATATTGCGAAAAGTAAGTTAAGCC
91547895 T
1 T
91547896 CAGGTCACAC
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
56 13 0.26
57 32 0.64
58 5 0.10
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (58 bp):
TTTTCAGTTTATGTTTTTTCAAAAAAATAGACTCATATTGCGAAAAGTAAGTTAAGCC
Found at i:91547967 original size:135 final size:134
Alignment explanation
Indices: 91547704--91547957 Score: 325
Period size: 135 Copynumber: 1.9 Consensus size: 134
91547694 CGCTAATGTA
* * *
91547704 TTTTTGTTTCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACAC
1 TTTTAGTTTCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTAAGTTGAGCCTCAGGACAC
** * *
91547769 ACGTTGAGGTATTTTCAGTTTATGTTTTTTCAAAAAAATAGACTCATATTGCGAAAAGTGAGTTA
66 ACACTGAGGTATTTTCAGTTTATGTTTTTTCAAAAAAATAGACTCATAATCCGAAAAGTGAGTTA
91547834 AGCC
131 AGCC
* ** *
91547838 TTTTAGTTTCTGTTTTTCAAAAAAATTCAACTCATATTGTGAGAGGTAAGTTGAGCCTCAGGTCA
1 TTTTAGTTTCTATTTTTCAAAAAAA-TCAACTCATATTACGAGAGGTAAGTTGAGCCTCAGGACA
* * *
91547903 CACACTGAGTTATTTTCAATTGTTACT-TTTTTTC-AAAAATTA-ACTCATAATCCGA
65 CACACTGAGGTATTTTC-AGT-TTA-TGTTTTTTCAAAAAAATAGACTCATAATCCGA
91547958 GAGATGAGTT
Statistics
Matches: 102, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
134 23 0.23
135 59 0.58
136 9 0.09
137 10 0.10
138 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (134 bp):
TTTTAGTTTCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTAAGTTGAGCCTCAGGACAC
ACACTGAGGTATTTTCAGTTTATGTTTTTTCAAAAAAATAGACTCATAATCCGAAAAGTGAGTTA
AGCC
Found at i:91548905 original size:21 final size:19
Alignment explanation
Indices: 91548861--91548906 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
91548851 CTAGAGTAAC
*
91548861 ACCAAATCAGAAGCACAAT
1 ACCAAATCAGAAGAACAAT
*
91548880 ACCAAATCAGAGGAACTAAGT
1 ACCAAATCAGAAGAAC-AA-T
91548901 ACCAAA
1 ACCAAA
91548907 AAATCAAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 14 0.61
20 2 0.09
21 7 0.30
ACGTcount: A:0.52, C:0.24, G:0.13, T:0.11
Consensus pattern (19 bp):
ACCAAATCAGAAGAACAAT
Found at i:91549614 original size:3 final size:3
Alignment explanation
Indices: 91549606--91549649 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
91549596 CTTTATTAAA
* *
91549606 TAT TAT TAT TAT TAT TAT T-T CTAA TAT TAT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TA
91549650 ATAAAATTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
2 1 0.03
3 34 0.97
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:91549658 original size:24 final size:24
Alignment explanation
Indices: 91549602--91549658 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
91549592 GTTTCTTTAT
* **
91549602 TAAATATTATTATTATTATTATTTC
1 TAAA-ATTATTACTATTATTATTAA
*
91549627 TAATATTATTACTATTATTATTAA
1 TAAAATTATTACTATTATTATTAA
91549651 TAAAATTA
1 TAAAATTA
91549659 GTGTATATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (24 bp):
TAAAATTATTACTATTATTATTAA
Found at i:91549694 original size:8 final size:8
Alignment explanation
Indices: 91549672--91549705 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
91549662 TATATTTTTA
91549672 TTATATAT
1 TTATATAT
91549680 GTATATATAT
1 -T-TATATAT
91549690 TTATATAT
1 TTATATAT
91549698 TTATATAT
1 TTATATAT
91549706 AATATTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 15 0.62
9 2 0.08
10 7 0.29
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (8 bp):
TTATATAT
Found at i:91549718 original size:26 final size:26
Alignment explanation
Indices: 91549662--91549747 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
91549652 AAAATTAGTG
* * *
91549662 TATATTTTTATTATATATGTATATATATT
1 TATATATTTA-TATATA-ATAT-TATTTT
91549691 TATATATTTATATATAATATTATTTT
1 TATATATTTATATATAATATTATTTT
* *
91549717 TA-ATTACTTTAT-TTTAATATTATTAT
1 TATA-TA-TTTATATATAATATTATTTT
91549743 TATAT
1 TATAT
91549748 TATATTTGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.02
26 24 0.49
27 9 0.18
28 6 0.12
29 9 0.18
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (26 bp):
TATATATTTATATATAATATTATTTT
Found at i:91549941 original size:23 final size:22
Alignment explanation
Indices: 91549903--91549968 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
91549893 TATTAGAACA
* *
91549903 TTATTTTATTATTATTATTTTT
1 TTATTCTAATATTATTATTTTT
* *
91549925 TTATTGTGAATATTATTGTTATTT
1 TTATTCT-AATATTATTATT-TTT
91549949 TTATTCTAATATTA-TATTTT
1 TTATTCTAATATTATTATTTT
91549969 AATATTTTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
21 2 0.05
22 9 0.24
23 17 0.46
24 9 0.24
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.68
Consensus pattern (22 bp):
TTATTCTAATATTATTATTTTT
Found at i:91550683 original size:21 final size:21
Alignment explanation
Indices: 91550642--91550686 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
91550632 AATCAATTCA
*
91550642 ATTTTATTTTAAATATTTATT
1 ATTTTATTTTAAATATATATT
*
91550663 ATTTTATTTTTAACT-TATATT
1 ATTTTA-TTTTAAATATATATT
91550684 ATT
1 ATT
91550687 ATTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (21 bp):
ATTTTATTTTAAATATATATT
Found at i:91551073 original size:10 final size:10
Alignment explanation
Indices: 91551058--91551100 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 10
91551048 CAAATAATTC
91551058 AAAAATTATA
1 AAAAATTATA
91551068 AAAAA-TA-A
1 AAAAATTATA
91551076 AAAAATATATA
1 AAAAAT-TATA
91551087 AAAAATTCATA
1 AAAAATT-ATA
91551098 AAA
1 AAA
91551101 TTTAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 6 0.21
9 2 0.07
10 8 0.28
11 13 0.45
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (10 bp):
AAAAATTATA
Found at i:91551106 original size:18 final size:18
Alignment explanation
Indices: 91551053--91551109 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
91551043 GTCAGCAAAT
91551053 AATTCAAAAATTATAAAA
1 AATTCAAAAATTATAAAA
**
91551071 AATAAAAAAATATATAAAA
1 AATTCAAAAAT-TATAAAA
91551090 AATTCATAAAATT-TAAAA
1 AATTCA-AAAATTATAAAA
91551108 AA
1 AA
91551110 AAATTGACAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 16 0.48
19 12 0.36
20 5 0.15
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (18 bp):
AATTCAAAAATTATAAAA
Found at i:91551248 original size:32 final size:32
Alignment explanation
Indices: 91551202--91551269 Score: 84
Period size: 31 Copynumber: 2.1 Consensus size: 32
91551192 AAAAAACATC
* *
91551202 ATTTTGACTCTTTTTTAAAAGGTTGATGGTCAA
1 ATTTTGAC-CCTTTTTAAAAGGTTGATGCTCAA
* *
91551235 ATTTT-ACCCTTTTTAATAGGTTGATTCTCAA
1 ATTTTGACCCTTTTTAAAAGGTTGATGCTCAA
91551266 ATTT
1 ATTT
91551270 AACTAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 24 0.77
32 2 0.06
33 5 0.16
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.49
Consensus pattern (32 bp):
ATTTTGACCCTTTTTAAAAGGTTGATGCTCAA
Found at i:91556825 original size:26 final size:26
Alignment explanation
Indices: 91556796--91556849 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
91556786 GAACAATTAT
**
91556796 ATCAAATTAAATTGAGTAAAAACACC
1 ATCAAATTAAATTGAACAAAAACACC
91556822 ATCAAATTAAATTGAACAAAAACACC
1 ATCAAATTAAATTGAACAAAAACACC
91556848 AT
1 AT
91556850 TAACTTTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.56, C:0.17, G:0.06, T:0.22
Consensus pattern (26 bp):
ATCAAATTAAATTGAACAAAAACACC
Found at i:91558524 original size:5 final size:5
Alignment explanation
Indices: 91558514--91558542 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
91558504 AGAAAACCGC
91558514 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
91558543 AGAGCTGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:91566991 original size:16 final size:15
Alignment explanation
Indices: 91566953--91566991 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
91566943 TGGATTCTCG
*
91566953 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
91566968 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
91566983 TATTCTTGG
1 TA-TCTTGG
91566992 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:91569060 original size:26 final size:26
Alignment explanation
Indices: 91568980--91569060 Score: 62
Period size: 25 Copynumber: 3.2 Consensus size: 26
91568970 TTGATCACGT
*
91568980 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACTAAGTGCAGGTTACTAC
* * * * *
91569006 GTGTATTA-GATG-GTTAGGTAACGTA-
1 GTGTAGTACTAAGTG-CAGGTTAC-TAC
91569031 -TGTAGTACTAAGTGCAGGTTACTAC
1 GTGTAGTACTAAGTGCAGGTTACTAC
91569056 GTGTA
1 GTGTA
91569061 CCGGATAATT
Statistics
Matches: 38, Mismatches: 11, Indels: 12
0.62 0.18 0.20
Matches are distributed among these distances:
24 9 0.24
25 15 0.39
26 14 0.37
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.32
Consensus pattern (26 bp):
GTGTAGTACTAAGTGCAGGTTACTAC
Found at i:91574998 original size:25 final size:24
Alignment explanation
Indices: 91574968--91575016 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
91574958 TCTTTTGGAC
91574968 TTGTTTTGTTGCTTTTGCTTTTGTT
1 TTGTTTTGTTGCTTTTG-TTTTGTT
91574993 TTGTTTTGTTGCTTTTGTTTTGTT
1 TTGTTTTGTTGCTTTTGTTTTGTT
91575017 GCTTTTGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.00, C:0.06, G:0.20, T:0.73
Consensus pattern (24 bp):
TTGTTTTGTTGCTTTTGTTTTGTT
Found at i:91575010 original size:14 final size:14
Alignment explanation
Indices: 91574968--91575023 Score: 82
Period size: 14 Copynumber: 4.2 Consensus size: 14
91574958 TCTTTTGGAC
91574968 TTGTTTTGTTGCTT
1 TTGTTTTGTTGCTT
*
91574982 TTG-CTT-TTG-TT
1 TTGTTTTGTTGCTT
91574993 TTGTTTTGTTGCTT
1 TTGTTTTGTTGCTT
91575007 TTGTTTTGTTGCTT
1 TTGTTTTGTTGCTT
91575021 TTG
1 TTG
91575024 CTTATGTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
11 5 0.14
12 5 0.14
13 5 0.14
14 22 0.59
ACGTcount: A:0.00, C:0.07, G:0.21, T:0.71
Consensus pattern (14 bp):
TTGTTTTGTTGCTT
Found at i:91575026 original size:20 final size:20
Alignment explanation
Indices: 91574968--91575042 Score: 109
Period size: 20 Copynumber: 3.8 Consensus size: 20
91574958 TCTTTTGGAC
91574968 TTGTTTTGTTGCTTTTGCTT
1 TTGTTTTGTTGCTTTTGCTT
91574988 TTGTTTTGTT--TTGTTGCTT
1 TTGTTTTGTTGCTT-TTGCTT
91575007 TTGTTTTGTTGCTTTTGCTT
1 TTGTTTTGTTGCTTTTGCTT
* *
91575027 ATGTTTTGTTTCTTTT
1 TTGTTTTGTTGCTTTT
91575043 AATTGAAAGC
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
18 2 0.04
19 16 0.32
20 30 0.60
21 2 0.04
ACGTcount: A:0.01, C:0.08, G:0.19, T:0.72
Consensus pattern (20 bp):
TTGTTTTGTTGCTTTTGCTT
Found at i:91575501 original size:17 final size:16
Alignment explanation
Indices: 91575470--91575507 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
91575460 AATAAAATAT
91575470 AGAGAATAAAGAGCAA
1 AGAGAATAAAGAGCAA
*
91575486 AGAGAATGAGAGAGCAA
1 AGAGAAT-AAAGAGCAA
91575503 AGAGA
1 AGAGA
91575508 GAGTGCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.58, C:0.05, G:0.32, T:0.05
Consensus pattern (16 bp):
AGAGAATAAAGAGCAA
Found at i:91580433 original size:8 final size:8
Alignment explanation
Indices: 91580399--91580458 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
91580389 TAATGATGTG
*
91580399 AATAATAA
1 AATATTAA
91580407 AATATATAA
1 AATAT-TAA
91580416 AATA-TAA
1 AATATTAA
91580423 AATATTAA
1 AATATTAA
*
91580431 AATATCAA
1 AATATTAA
*
91580439 AATATCAA
1 AATATTAA
*
91580447 AATATTAG
1 AATATTAA
91580455 AATA
1 AATA
91580459 ATAATAATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
7 7 0.15
8 32 0.70
9 7 0.15
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (8 bp):
AATATTAA
Found at i:91580668 original size:22 final size:24
Alignment explanation
Indices: 91580608--91580672 Score: 98
Period size: 25 Copynumber: 2.8 Consensus size: 24
91580598 CGTGATAATA
91580608 TTAAAAATATATACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
91580633 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
91580656 TT-AAAATATATACATAA
1 TTAAAAATATATACATAA
91580673 GATAACATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 14 0.37
23 3 0.08
25 21 0.55
ACGTcount: A:0.55, C:0.06, G:0.05, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:91580738 original size:25 final size:25
Alignment explanation
Indices: 91580699--91580754 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
91580689 AATATATATG
* *
91580699 TATATA-ATAATATAGTATTAAAGA
1 TATATACATAAAATAGTATAAAAGA
*
91580723 TATATACATAAAATAGTATAAAATA
1 TATATACATAAAATAGTATAAAAGA
91580748 TATATAC
1 TATATAC
91580755 GTAATATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 6 0.21
25 22 0.79
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (25 bp):
TATATACATAAAATAGTATAAAAGA
Found at i:91580828 original size:45 final size:47
Alignment explanation
Indices: 91580699--91580828 Score: 124
Period size: 45 Copynumber: 2.7 Consensus size: 47
91580689 AATATATATG
* * * *
91580699 TATATAATAATATAGTATTAAAGATATATACATAAAATAGTATAAAATA
1 TATAT-ATAATATAATATT-AAGAAATATACATAATATAGTATAAAAGA
* * *
91580748 TATATACGTAATATAAAATTTA-AAATATACCTAATATA-T-TAAAAGGA
1 TATATA--TAATATAATATTAAGAAATATACATAATATAGTATAAAA-GA
91580795 TATATATAATATAATATTAAGAAATATA-ATAATA
1 TATATATAATATAATATTAAGAAATATACATAATA
91580829 ACAAAAAGAG
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
45 17 0.25
46 12 0.18
47 8 0.12
48 14 0.21
49 6 0.09
50 10 0.15
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.35
Consensus pattern (47 bp):
TATATATAATATAATATTAAGAAATATACATAATATAGTATAAAAGA
Found at i:91581412 original size:30 final size:30
Alignment explanation
Indices: 91581373--91581493 Score: 215
Period size: 30 Copynumber: 4.0 Consensus size: 30
91581363 AATGGAGCAA
* *
91581373 GTGTAGCTAGTGGATTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
91581403 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
91581433 GAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
91581463 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
91581493 G
1 G
91581494 CTAAGATTTA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 87 1.00
ACGTcount: A:0.21, C:0.03, G:0.49, T:0.26
Consensus pattern (30 bp):
GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:91581414 original size:60 final size:60
Alignment explanation
Indices: 91581343--91581493 Score: 187
Period size: 60 Copynumber: 2.5 Consensus size: 60
91581333 GATGGAGCAA
* * * *
91581343 GTGTGGTTAGTGGAGTAGGTAATGGAGCAA-GTGTAGCTAGTGGATTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTAGGTAATGGA-AAAGGAGTAGCTAGTGGAGTTGGTGGTGGAAAAG
* ** *
91581403 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTAGGTAATGGAAAAGGAGTAGCTAGTGGAGTTGGTGGTGGAAAAG
* **
91581463 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 GTGTGGCTAGTGGAGTAGGTAATGGAAAAGG
91581494 CTAAGATTTA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
59 2 0.02
60 80 0.98
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.26
Consensus pattern (60 bp):
GTGTGGCTAGTGGAGTAGGTAATGGAAAAGGAGTAGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:91582393 original size:14 final size:14
Alignment explanation
Indices: 91582374--91582405 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
91582364 TTGATTCTTA
91582374 AAAAGCAAAAATTG
1 AAAAGCAAAAATTG
*
91582388 AAAAGCATAAATTG
1 AAAAGCAAAAATTG
91582402 AAAA
1 AAAA
91582406 TACCTCAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.16
Consensus pattern (14 bp):
AAAAGCAAAAATTG
Found at i:91582491 original size:192 final size:192
Alignment explanation
Indices: 91582231--91582580 Score: 596
Period size: 192 Copynumber: 1.8 Consensus size: 192
91582221 ACGTGAGTCA
91582231 AGGCTCAACTAACCTCTCGCAATATGAGTTTTTTTTTGAAACACAGAAATTAAAAAAAAACAGAA
1 AGGCTCAACTAACCTCTCGCAATATGAGTTTTTTTTTGAAACACAGAAATTAAAAAAAAACAGAA
*
91582296 ATTAAAAACAGAATTTGAAAAGACCTTGGCGTGTGGCCCGAGACTCAACTCACCTCTCGCAATAT
66 ATTAAAAACAGAATTTGAAAAGACCTCGGCGTGTGGCCCGAGACTCAACTCACCTCTCGCAATAT
91582361 GAGTTGATTCTTAAAAAGCAAAAATTGAAAAGCATAAATTGAAAATACCTCAACGTGCCCTG
131 GAGTTGATTCTTAAAAAGCAAAAATTGAAAAGCATAAATTGAAAATACCTCAACGTGCCCTG
* *
91582423 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAACACAGAAATT-AAAAAAAA-AG
1 AGGCTCAACTAACCTCTCGCAATATGAGTT--TTTTTTTGAAACACAGAAATTAAAAAAAAACAG
* *
91582486 AAATTAAAGACAGAATTTGAAAAGACCTCGGCGTGTGGCCTGAGACTCAACTCACCTCTCGCAAT
64 AAATTAAAAACAGAATTTGAAAAGACCTCGGCGTGTGGCCCGAGACTCAACTCACCTCTCGCAAT
* * *
91582551 ATGAGTTGATTTTTGAAAAGCAGAAATTGA
129 ATGAGTTGATTCTTAAAAAGCAAAAATTGA
91582581 GAACGCCTCA
Statistics
Matches: 148, Mismatches: 8, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
192 119 0.80
193 8 0.05
194 21 0.14
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.25
Consensus pattern (192 bp):
AGGCTCAACTAACCTCTCGCAATATGAGTTTTTTTTTGAAACACAGAAATTAAAAAAAAACAGAA
ATTAAAAACAGAATTTGAAAAGACCTCGGCGTGTGGCCCGAGACTCAACTCACCTCTCGCAATAT
GAGTTGATTCTTAAAAAGCAAAAATTGAAAAGCATAAATTGAAAATACCTCAACGTGCCCTG
Found at i:91582625 original size:75 final size:77
Alignment explanation
Indices: 91582511--91582657 Score: 208
Period size: 75 Copynumber: 1.9 Consensus size: 77
91582501 TTTGAAAAGA
* * *
91582511 CCTCGGCGTGTGGCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTTGAAAAGCAG
1 CCTCAGCGTGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAG
91582574 AAATTGAGAACG
66 AAATTGAGAACG
* * * * *
91582586 CCTCAGCGTGTGACCCGAGGCTTAACTCACTTCTTGCAATATGAGTTGATTCTTTTGAAAAGTAG
1 CCTCAGCGTGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAG
91582651 AAATTGA
66 AAATTGA
91582658 AAAGCAGAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
75 42 0.68
76 1 0.02
77 19 0.31
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (77 bp):
CCTCAGCGTGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAG
AAATTGAGAACG
Found at i:91582659 original size:14 final size:14
Alignment explanation
Indices: 91582640--91582674 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
91582630 GTTGATTCTT
*
91582640 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
91582654 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
91582668 TTGAAAA
1 TTGAAAA
91582675 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:91582723 original size:164 final size:158
Alignment explanation
Indices: 91582484--91583119 Score: 530
Period size: 164 Copynumber: 3.9 Consensus size: 158
91582474 TTAAAAAAAA
* * * * *
91582484 AGAAATT--AAAGACAGAATTTGAAAAGACCTCGGCGTGTGGCCTGAGACTCAACTCACCTCTCG
1 AGAAATTGAAAAG-CAGAAATTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCG
* * * *
91582547 CAATATGAGTTGATTTTTGAAAAGCAGAAATTGAGAACGCCTCAGCGTGTGACCCGAGGCTTAAC
63 CAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAACACCTCAGCGTGT--CCCGAGGCTCAA-
* * *
91582612 TCACTTCTTGCAATATGAGTTGATTCTTTTGA-AAAGT
125 TCACCTCTCGCAATATGAGTTGA---TTTTGACAAA-C
*
91582649 AGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAA
1 AGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
* * * *
91582714 TGTGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAATC
66 TATGAGTTGA--TTTTTG--AAAAACAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAATC
*
91582779 ACCTCTCGCAATATGAGTTGATTTTGACGAAC
127 ACCTCTCGCAATATGAGTTGATTTTGACAAAC
** **
91582811 AGAAATTGAAAAATAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGC
1 AGAAATTGAAAAGCAGAAATTGAAAATACCTCAG--CGTGTCCCGAGGCTCAACTCACCTCTCGC
* **
91582876 AATATGAGTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGC--GTCTT
64 AATATGAGTT-GATTTTTG----A-AAA---AC--A--GAAATTGAAAACACCTCAGCGTGTCCC
91582939 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-------
116 GAGGCTCAA-TCACCTCTCGCAATATGAGTTGATTTTGACAAAC
*** * ** *
91582976 --TTTTTG-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCA
1 AGAAATTGAAAAG-CAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
* *
91583038 ATATGAGTTGATTTTTTTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACT
65 ATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAA-CACCTCAGCGTGTCCCGAGGCTCAA-T
*
91583102 CACCTCTCGCAATGTGAG
126 CACCTCTCGCAATATGAG
91583120 CAGAAATTGA
Statistics
Matches: 402, Mismatches: 42, Indels: 67
0.79 0.08 0.13
Matches are distributed among these distances:
149 4 0.01
150 15 0.04
152 33 0.08
154 2 0.00
157 3 0.01
158 1 0.00
160 2 0.00
161 34 0.08
162 47 0.12
163 30 0.07
164 67 0.17
165 32 0.08
166 43 0.11
167 4 0.01
168 25 0.06
169 1 0.00
171 13 0.03
172 27 0.07
173 19 0.05
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (158 bp):
AGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGAAAAACAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAATCACCT
CTCGCAATATGAGTTGATTTTGACAAAC
Found at i:91582731 original size:89 final size:91
Alignment explanation
Indices: 91582563--91582751 Score: 247
Period size: 91 Copynumber: 2.1 Consensus size: 91
91582553 GAGTTGATTT
* * * * **
91582563 TTGAAAAGCAGAAATTGAGAACGCCTCAGCGTGTGACCCGAGGCTTAACTCACTTCTTGCAATAT
1 TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGT-ACCCGAGGCTCAACTCACCTCTCACAATAT
*
91582628 GAGTTGATTCTTTTG-AAAAGTAGAAA
65 GAGTTGATTCTTTTGAAAAAATAGAAA
* *
91582654 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGT-CCCGAGGCTCAACTCACCTCTCACAATGTG
1 TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGTACCCGAGGCTCAACTCACCTCTCACAATATG
* *
91582718 AGTTGATTTTTTTGATAAAAATAGAAT
66 AGTTGATTCTTTTGA-AAAAATAGAAA
91582745 TTGAAAA
1 TTGAAAA
91582752 TACCTCAGCG
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
89 38 0.45
91 47 0.55
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (91 bp):
TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGTACCCGAGGCTCAACTCACCTCTCACAATATG
AGTTGATTCTTTTGAAAAAATAGAAA
Found at i:91582905 original size:88 final size:84
Alignment explanation
Indices: 91582734--91582976 Score: 314
Period size: 88 Copynumber: 2.8 Consensus size: 84
91582724 TTTTTTTGAT
*
91582734 AAAAATAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAA-TCACCTCTCGCAATATGAGTT
1 AAAAATAGAAATTGAAAATACCTCAGCGTG--CCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
91582798 GA-TTTTGACGAACAGAAATTG
64 GATTTTTGAC-AAAAGAAATTG
91582819 AAAAATAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAATAGAAATTGAAAATACCTCAG--CGT--GCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
91582884 TTGGATTTTTGA-AAAATAAATTG
62 TT-GATTTTTGACAAAAGAAATTG
* ** *
91582907 ACAAACGGAAATTGAAAATACCTCAGCGT-CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAAATAGAAATTGAAAATACCTCAGCGTGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTG
91582971 ATTTTT
65 ATTTTT
91582977 TTTTGAAAGA
Statistics
Matches: 143, Mismatches: 7, Indels: 18
0.85 0.04 0.11
Matches are distributed among these distances:
83 8 0.06
84 31 0.22
85 25 0.17
86 3 0.02
87 14 0.10
88 53 0.37
89 3 0.02
90 6 0.04
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (84 bp):
AAAAATAGAAATTGAAAATACCTCAGCGTGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGACAAAAGAAATTG
Found at i:91583022 original size:248 final size:252
Alignment explanation
Indices: 91582563--91583052 Score: 661
Period size: 248 Copynumber: 2.0 Consensus size: 252
91582553 GAGTTGATTT
* * * ** * * *
91582563 TTGAAAAGCAGAAATTGAGAACGCCTCAGCGTGTGACCCGAGGCTTAACTCACTTCTTGCAATAT
1 TTGAAAAACAGAAATTGAAAACACCTCAGCACGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
91582628 GAGTTGATTCTTTTGAAAAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGA
66 GAGTTGATTCTTTTGAAAAG-AGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCG-GTCCCGA
* * *
91582693 GGCTCAACTCACCTCTCACAATGTGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATACCTC
129 GGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGATAAAAACAGAAATTGAAAATACCTC
*
91582758 AGCGTGTCCCGAGGCTCAA-TCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAA
194 AACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAA
* * *
91582816 TTGAAAAATAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAACACCTCAGCACGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
* * **
91582881 GAGTTGGA-T-TTTTGAAAA-ATAAATTGACAAA-CGGAAATTGAAAATACCTCAGC-GTCTTGA
66 GAGTT-GATTCTTTTGAAAAGAGAAATTGA-AAAGCAGAAATTGAAAATACCTCAGCGGTCCCGA
* * *
91582941 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-TTGAAAGACAGAAATTGAAAATACCT
129 GGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAT-AAAAACAGAAATTGAAAATACCT
** *
91583005 CAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTT
193 CAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
91583053 TTTGAAAAAC
Statistics
Matches: 208, Mismatches: 25, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
247 1 0.00
248 78 0.38
249 26 0.12
250 29 0.14
251 3 0.01
252 9 0.04
253 60 0.29
254 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (252 bp):
TTGAAAAACAGAAATTGAAAACACCTCAGCACGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTCTTTTGAAAAGAGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCGGTCCCGAGG
CTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGATAAAAACAGAAATTGAAAATACCTCAA
CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAA
Found at i:91583056 original size:75 final size:76
Alignment explanation
Indices: 91582904--91583119 Score: 314
Period size: 75 Copynumber: 2.9 Consensus size: 76
91582894 GAAAAATAAA
* * *
91582904 TTGACAAACGGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
91582967 GTTGATTTTTTT
66 GTTGA-TTTTTT
* *
91582979 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
91583044 GTTGA-TTTTT
66 GTTGATTTTTT
* * *
91583054 TTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTG
1 TTGAAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
91583118 AG
65 AG
91583120 CAGAAATTGA
Statistics
Matches: 128, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
74 4 0.03
75 85 0.66
76 1 0.01
77 38 0.30
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (76 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTT
Found at i:91583152 original size:58 final size:58
Alignment explanation
Indices: 91583062--91583177 Score: 162
Period size: 58 Copynumber: 2.0 Consensus size: 58
91583052 TTTTGAAAAA
* *
91583062 CAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTGAG
1 CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
91583120 CAGAAATTGAAAA-TACCTCAATGTGTCTTGAGGCTTAACTCACCTCTCGTAATATGAG
1 CAGAAATT-AAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
91583178 TTGATTTTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
58 47 0.92
59 4 0.08
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (58 bp):
CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
Found at i:91583239 original size:71 final size:71
Alignment explanation
Indices: 91583123--91583415 Score: 300
Period size: 73 Copynumber: 4.0 Consensus size: 71
91583113 ATGTGAGCAG
** * * * *
91583123 AAATTGAAAATACCTCAATGTGTCTTGAGGCTTAACTCACCTCTCGTAATATGAGTTGATTTTTA
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTA
91583188 AAAAAT
66 AAAAAT
* *
91583194 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATATTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTT
*
91583259 ACAAACAT
65 A-AAAAAT
* * * * *
91583267 AAATTGAAATTACCTCAGCGTACCCTGAGGCTCAACTCACCTTTCACAATGT-AGGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA-GTTGA--TTT
* *
91583331 TTGAAAACCAG
63 TT-AAAA-AAT
* *
91583342 AGATTGAAAATACCTCAGTGTGCCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AAATTGAAAATACCTCA----G-CGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
91583407 TTTTGAAAA
61 TTTTAAAAA
91583416 TAGAAATAAA
Statistics
Matches: 183, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
71 53 0.29
72 5 0.03
73 56 0.31
74 6 0.03
75 19 0.10
77 3 0.02
78 5 0.03
79 1 0.01
80 34 0.19
81 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTA
AAAAAT
Found at i:91583296 original size:73 final size:72
Alignment explanation
Indices: 91583123--91583415 Score: 329
Period size: 71 Copynumber: 4.0 Consensus size: 72
91583113 ATGTGAGCAG
** * * * *
91583123 AAATTGAAAATACCTCAATGTGTCTTGAGGCTTAACTCACCTCTCGTAATATGAGTTGATTTTT-
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
91583187 AAAAAAT
66 AAAACAT
* *
91583194 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATATTTG
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
91583259 ACAAACAT
66 A-AAACAT
* * * * *
91583267 AAATTGAAATTACCTCAGCGTACCCTGAGGCTCAACTCACCTTTCACAATGT-AGGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA-GTTGA--TTT
*
91583331 TTGAAAACCAG
63 TTGAAAA-CAT
* *
91583342 AGATTGAAAATACCTCAGTGTGCCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AAATTGAAAATACCTCA----G-CGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
91583407 TTTTGAAAA
61 TTTTGAAAA
91583416 TAGAAATAAA
Statistics
Matches: 186, Mismatches: 24, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
71 56 0.30
72 2 0.01
73 56 0.30
74 3 0.02
75 23 0.12
78 10 0.05
79 1 0.01
80 34 0.18
81 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (72 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAACAT
Found at i:91602683 original size:21 final size:20
Alignment explanation
Indices: 91602659--91602697 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
91602649 CCGTGTTAAT
91602659 TTTGTACTTTGGCCCATTTTC
1 TTTGT-CTTTGGCCCATTTTC
* *
91602680 TTTGTTTTTGGCGCATTT
1 TTTGTCTTTGGCCCATTT
91602698 CTCGTTCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.08, C:0.18, G:0.18, T:0.56
Consensus pattern (20 bp):
TTTGTCTTTGGCCCATTTTC
Found at i:91630967 original size:46 final size:46
Alignment explanation
Indices: 91630916--91631105 Score: 344
Period size: 46 Copynumber: 4.1 Consensus size: 46
91630906 GTGTGCTCTC
* *
91630916 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACAATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
**
91630962 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
91631008 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
91631054 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
91631100 TGATAT
1 TGATAT
91631106 ACCATGGTTG
Statistics
Matches: 138, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 138 1.00
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:91631115 original size:34 final size:35
Alignment explanation
Indices: 91631068--91631172 Score: 117
Period size: 34 Copynumber: 3.0 Consensus size: 35
91631058 ATGAAATGTG
91631068 TAAGACCATGGTTGAAAGATACCATGGCAACGTGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGA
* * * * *
91631103 T-ATACCATGGTTGAAAGA-ACGTGATATGAAATGTG-
1 TAAGACCATGGTTGAAAGATAC--CAT-GGCAACGTGA
91631138 TAAGACCATGGTTGAAAGATACCATGGCAACGTGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGA
91631173 CATGAAATGA
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
33 2 0.04
34 22 0.41
35 6 0.11
36 22 0.41
37 2 0.04
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (35 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGA
Found at i:91631142 original size:116 final size:116
Alignment explanation
Indices: 91631004--91631214 Score: 404
Period size: 116 Copynumber: 1.8 Consensus size: 116
91630994 ATACCATGGC
* *
91631004 AACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGT
1 AACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAGT
91631069 AAGACCATGGTTGAAAGATACCATGGCAACGTGATATACCATGGTTGAAAG
66 AAGACCATGGTTGAAAGATACCATGGCAACGTGATATACCATGGTTGAAAG
91631120 AACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAGT
1 AACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAGT
91631185 AAGACCATGGTTGAAAGATACCATGGCAAC
66 AAGACCATGGTTGAAAGATACCATGGCAAC
91631215 ATGACAGAAA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 93 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.23
Consensus pattern (116 bp):
AACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAGT
AAGACCATGGTTGAAAGATACCATGGCAACGTGATATACCATGGTTGAAAG
Found at i:91631153 original size:36 final size:36
Alignment explanation
Indices: 91631050--91631156 Score: 123
Period size: 36 Copynumber: 3.0 Consensus size: 36
91631040 ATACCATGGC
91631050 AACGTGATATGAAATGTGTAAGACCATGGTTGAAAG
1 AACGTGATATGAAATGTGTAAGACCATGGTTGAAAG
* * * * *
91631086 ATAC--CAT-GGCAACGTG-ATATACCATGGTTGAAAG
1 A-ACGTGATATGAAATGTGTA-AGACCATGGTTGAAAG
91631120 AACGTGATATGAAATGTGTAAGACCATGGTTGAAAG
1 AACGTGATATGAAATGTGTAAGACCATGGTTGAAAG
91631156 A
1 A
91631157 TACCATGGCA
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
33 3 0.05
34 22 0.40
35 4 0.07
36 23 0.42
37 3 0.05
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.24
Consensus pattern (36 bp):
AACGTGATATGAAATGTGTAAGACCATGGTTGAAAG
Found at i:91631178 original size:46 final size:46
Alignment explanation
Indices: 91631120--91631251 Score: 194
Period size: 46 Copynumber: 2.9 Consensus size: 46
91631110 TGGTTGAAAG
* *
91631120 AACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
1 AACGTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGC
91631166 AACGTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGC
1 AACGTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGC
* * * *
91631212 AACATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 AACGTGACATG-AAATGAGTAAGACCATGGTTGAAAGATAC
91631252 TATGACATCA
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 78 0.99
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
AACGTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGC
Found at i:91636718 original size:16 final size:17
Alignment explanation
Indices: 91636699--91636734 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
91636689 TAAACCTTCG
*
91636699 AAACCTTAAAAT-CCAA
1 AAACCCTAAAATACCAA
91636715 AAACCCTAAAATACCAA
1 AAACCCTAAAATACCAA
91636732 AAA
1 AAA
91636735 TAGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.61, C:0.25, G:0.00, T:0.14
Consensus pattern (17 bp):
AAACCCTAAAATACCAA
Found at i:91638044 original size:23 final size:23
Alignment explanation
Indices: 91638018--91638065 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
91638008 ATAATAATTT
91638018 TTACTAGTCCTTTTTTCTATAAG
1 TTACTAGTCCTTTTTTCTATAAG
91638041 TTACTAGTCCTTTTTTCTATAAG
1 TTACTAGTCCTTTTTTCTATAAG
91638064 TT
1 TT
91638066 TAGTCAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.17, G:0.08, T:0.54
Consensus pattern (23 bp):
TTACTAGTCCTTTTTTCTATAAG
Found at i:91638069 original size:21 final size:22
Alignment explanation
Indices: 91638022--91638070 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 22
91638012 TAATTTTTAC
91638022 TAGTCCTTTTTTCTATAAGTTA
1 TAGTCCTTTTTTCTATAAGTTA
91638044 CTAGTCCTTTTTTCTATAAGTT-
1 -TAGTCCTTTTTTCTATAAGTTA
91638066 TAGTC
1 TAGTC
91638071 AAATTTGCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 5 0.19
23 21 0.81
ACGTcount: A:0.20, C:0.16, G:0.10, T:0.53
Consensus pattern (22 bp):
TAGTCCTTTTTTCTATAAGTTA
Found at i:91638841 original size:16 final size:15
Alignment explanation
Indices: 91638809--91638848 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
91638799 AATATATATT
91638809 TATAAAATATAAAATA
1 TATAAAA-ATAAAATA
*
91638825 TCTAAAAATAAAGATA
1 TATAAAAATAAA-ATA
91638841 TATAAAAA
1 TATAAAAA
91638849 GCCTATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (15 bp):
TATAAAAATAAAATA
Found at i:91638905 original size:26 final size:25
Alignment explanation
Indices: 91638783--91638957 Score: 86
Period size: 24 Copynumber: 6.7 Consensus size: 25
91638773 TTACTATTAT
** *
91638783 TTTAAAAAT-TATATTAAATATATA
1 TTTAAAAATATATAAAAAATATAAA
* * *
91638807 TTTATAAA-ATATAAAATATCTAAA
1 TTTAAAAATATATAAAAAATATAAA
** * *
91638831 AATAAAGATATATAAAAAGCCTATAATA
1 TTTAAAAATATATAAAAA--ATATAA-A
*
91638859 TTTTTGAAAAATATACAAAAAAATATATAA
1 --TTT-AAAAATATA-TAAAAAATATA-AA
* *
91638889 TTTAAAAATTTATAAAATAAATAAAAA
1 TTTAAAAATATAT-AAA-AAATATAAA
* *
91638916 TTTTAAATATATATAAAAACTA-AAA
1 -TTTAAAAATATATAAAAAATATAAA
*
91638941 TTTATAAATATATAAAA
1 TTTAAAAATATATAAAA
91638958 GAACTAAAAA
Statistics
Matches: 112, Mismatches: 26, Indels: 26
0.68 0.16 0.16
Matches are distributed among these distances:
24 36 0.32
25 11 0.10
26 4 0.04
27 20 0.18
28 21 0.19
30 6 0.05
31 9 0.08
32 5 0.04
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (25 bp):
TTTAAAAATATATAAAAAATATAAA
Found at i:91638911 original size:28 final size:27
Alignment explanation
Indices: 91638860--91638967 Score: 89
Period size: 27 Copynumber: 4.0 Consensus size: 27
91638850 CCTATAATAT
* *
91638860 TTTTGAAAAATATACAAAAAAATATATAA
1 TTTT-AAAAATATATAAAAAAATA-AAAA
*
91638889 -TTTAAAAATTTATAAAATAAATAAAAA
1 TTTTAAAAATATATAAAA-AAATAAAAA
* *
91638916 TTTTAAATATATAT-AAAAACT-AAAA
1 TTTTAAAAATATATAAAAAAATAAAAA
* *
91638941 -TTTATAAATATATAAAAGAACTAAAAA
1 TTTTAAAAATATATAAAA-AAATAAAAA
91638968 ACACGTTTAG
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
24 11 0.17
25 7 0.11
26 7 0.11
27 22 0.33
28 19 0.29
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (27 bp):
TTTTAAAAATATATAAAAAAATAAAAA
Done.