Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 286 of 325
Found at i:91638915 original size:19 final size:19
Alignment explanation
Indices: 91638891--91638934 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
91638881 ATATATAATT
91638891 TAAAAATTTATAAA-ATAAA
1 TAAAAATTT-TAAATATAAA
*
91638910 TAAAAATTTTAAATATATA
1 TAAAAATTTTAAATATAAA
91638929 TAAAAA
1 TAAAAA
91638935 CTAAAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TAAAAATTTTAAATATAAA
Found at i:91638926 original size:24 final size:26
Alignment explanation
Indices: 91638912--91638966 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
91638902 AAAATAAATA
91638912 AAAATTT-TAAATATATATAAAAACT
1 AAAATTTATAAATATATATAAAAACT
91638937 AAAATTTATAAATATATA-AAAGAACT
1 AAAATTTATAAATATATATAAA-AACT
91638963 AAAA
1 AAAA
91638967 AACACGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 10 0.36
26 18 0.64
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (26 bp):
AAAATTTATAAATATATATAAAAACT
Found at i:91638962 original size:26 final size:24
Alignment explanation
Indices: 91638866--91638966 Score: 85
Period size: 26 Copynumber: 3.9 Consensus size: 24
91638856 ATATTTTTGA
* *
91638866 AAAATATACAAAAAAATATATAATTT
1 AAAATATATAAAAAACTA-A-AATTT
* *
91638892 AAAAATTTATAAAATAAATAAAAATTT
1 -AAAATATATAAAA-AACT-AAAATTT
*
91638919 TAAATATATATAAAAACTAAAATTT
1 AAAATATATA-AAAAACTAAAATTT
91638944 ATAAATATATAAAAGAACTAAAA
1 A-AAATATATAAAA-AACTAAAA
91638967 AACACGTTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 11
0.79 0.08 0.14
Matches are distributed among these distances:
25 10 0.16
26 28 0.44
27 19 0.30
28 5 0.08
29 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (24 bp):
AAAATATATAAAAAACTAAAATTT
Found at i:91640475 original size:10 final size:10
Alignment explanation
Indices: 91640460--91640494 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
91640450 TTTCCTATTA
91640460 TCATTGCCCT
1 TCATTGCCCT
91640470 TCATTGCCCT
1 TCATTGCCCT
* *
91640480 TCATTTCTCT
1 TCATTGCCCT
91640490 TCATT
1 TCATT
91640495 TTTTTCTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.11, C:0.34, G:0.06, T:0.49
Consensus pattern (10 bp):
TCATTGCCCT
Found at i:91642386 original size:25 final size:25
Alignment explanation
Indices: 91642329--91642387 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
91642319 CTCAAAATAA
* *
91642329 CTTACCGATATTCAACTCGTATGAG
1 CTTACCGTTACTCAACTCGTATGAG
* *
91642354 CTTACCGTTACTCAGCTCGTATGAT
1 CTTACCGTTACTCAACTCGTATGAG
91642379 CTTACCGTT
1 CTTACCGTT
91642388 TATAGATTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (25 bp):
CTTACCGTTACTCAACTCGTATGAG
Found at i:91644306 original size:43 final size:43
Alignment explanation
Indices: 91644244--91644419 Score: 149
Period size: 43 Copynumber: 4.0 Consensus size: 43
91644234 AAAGAGGAAG
** *
91644244 AATTTGTGGCTTCGTCCACAACCTACATGACAACTTGTCTGCAA
1 AATTTGTGG-TTTATCCACAACCTACATGACAGCTTGTCTGCAA
* * *
91644288 AATTTATGGTTTATCCACAACCTACACGACAGCTTATCTGCGAA
1 AATTTGTGGTTTATCCACAACCTACATGACAGCTTGTCTGC-AA
* * ** * * *
91644332 TATTGGTGGCTTCGTCCACAATCTACATGACAGTTTGTCT--ATG
1 AATTTGTGG-TTTATCCACAACCTACATGACAGCTTGTCTGCA-A
* * *
91644375 AATTTGGTGCTTTATCCACAATCTACATGACATCTTGTCTGCAA
1 AATTT-GTGGTTTATCCACAACCTACATGACAGCTTGTCTGCAA
91644419 A
1 A
91644420 TATTGGTAGC
Statistics
Matches: 102, Mismatches: 24, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
42 1 0.01
43 56 0.55
44 20 0.20
45 25 0.25
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (43 bp):
AATTTGTGGTTTATCCACAACCTACATGACAGCTTGTCTGCAA
Found at i:91644401 original size:88 final size:87
Alignment explanation
Indices: 91644249--91644439 Score: 231
Period size: 88 Copynumber: 2.2 Consensus size: 87
91644239 GGAAGAATTT
*
91644249 GTGGCTTCGTCCACAACCTACATGACAACTTGTCTGCAAAATTTATGGTTTATCCACAACCTACA
1 GTGGCTTCGTCCACAACCTACATGACAACTTGTCT-CAAAATTTATGCTTTATCCACAACCTACA
*
91644314 CGACAGCTTATCTGCGAATATTG
65 CGACAGCTTATCTGCAAATATTG
* ** * * *
91644337 GTGGCTTCGTCCACAATCTACATGACAGTTTGTCT-ATGAATTTGGTGCTTTATCCACAATCTAC
1 GTGGCTTCGTCCACAACCTACATGACAACTTGTCTCA-AAATTT-ATGCTTTATCCACAACCTAC
* * *
91644401 ATGACATCTTGTCTGCAAATATTG
64 ACGACAGCTTATCTGCAAATATTG
* *
91644425 GTAGCTTCGACCACA
1 GTGGCTTCGTCCACA
91644440 TATACTGGAG
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
86 1 0.01
87 5 0.06
88 82 0.93
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (87 bp):
GTGGCTTCGTCCACAACCTACATGACAACTTGTCTCAAAATTTATGCTTTATCCACAACCTACAC
GACAGCTTATCTGCAAATATTG
Found at i:91645743 original size:25 final size:24
Alignment explanation
Indices: 91645701--91645762 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 24
91645691 AATCAATTTT
*
91645701 AAAATAATATA-AAAATTATT-TAA
1 AAAATAAAATATAAAATTATTAT-A
91645724 AAAATAAAATTATAAAATTATTATA
1 AAAATAAAA-TATAAAATTATTATA
*
91645749 AATATAAAATATAA
1 AAAATAAAATATAA
91645763 TTTTTTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 8 0.24
24 7 0.21
25 18 0.53
26 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (24 bp):
AAAATAAAATATAAAATTATTATA
Found at i:91646487 original size:17 final size:17
Alignment explanation
Indices: 91646465--91646497 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
91646455 TAAAAATTGC
91646465 ATATTTTATTTTTTTAA
1 ATATTTTATTTTTTTAA
91646482 ATATTTTATTTTTTTA
1 ATATTTTATTTTTTTA
91646498 TTTTTACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
ATATTTTATTTTTTTAA
Found at i:91662253 original size:21 final size:21
Alignment explanation
Indices: 91662214--91662253 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91662204 ACTCCAAACC
* *
91662214 TAACTCATAATAGGCATATTG
1 TAACTCATAAAAGGAATATTG
*
91662235 TAACTCATAAAATGAATAT
1 TAACTCATAAAAGGAATAT
91662254 GAAATTGAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (21 bp):
TAACTCATAAAAGGAATATTG
Found at i:91666563 original size:47 final size:47
Alignment explanation
Indices: 91666512--91666624 Score: 199
Period size: 47 Copynumber: 2.4 Consensus size: 47
91666502 TCACAGTAAT
*
91666512 GCAGATAAACTACCAATAATCAAAATTGTGGACAAGCCACCAAAATC
1 GCAGATAAACTACCAATAATCAAAATCGTGGACAAGCCACCAAAATC
*
91666559 GCAGATAAATTACCAATAATCAAAATCGTGGACAAGCCACCAAAATC
1 GCAGATAAACTACCAATAATCAAAATCGTGGACAAGCCACCAAAATC
*
91666606 GCAGATAAACTGCCAATAA
1 GCAGATAAACTACCAATAA
91666625 CTTCCACCTT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.47, C:0.23, G:0.13, T:0.17
Consensus pattern (47 bp):
GCAGATAAACTACCAATAATCAAAATCGTGGACAAGCCACCAAAATC
Found at i:91672965 original size:22 final size:23
Alignment explanation
Indices: 91672940--91672984 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91672930 TTTGTTCAAA
*
91672940 TTTAACTT-TTATTTAAAAACAT
1 TTTAACTTGTTATATAAAAACAT
* *
91672962 TTTAATTTGTTATATCAAAACAT
1 TTTAACTTGTTATATAAAAACAT
91672985 AATATCAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (23 bp):
TTTAACTTGTTATATAAAAACAT
Found at i:91677738 original size:20 final size:19
Alignment explanation
Indices: 91677713--91677799 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 19
91677703 AAAGGCATCA
**
91677713 AAGTGCAGGCAGAGGCACG
1 AAGTGCAGAAAGAGGCACG
*
91677732 AATGTGCA-ATTAGAGGCACCG
1 AA-GTGCAGA-AAGAGGCA-CG
*
91677753 AAGTGCAGAAAGAGGCACCA
1 AAGTGCAGAAAGAGGCA-CG
91677773 AAGTGCA-AATAGAGGCACCG
1 AAGTGCAGAA-AGAGGCA-CG
91677793 AAGTGCA
1 AAGTGCA
91677800 AACCCATACA
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
19 4 0.07
20 49 0.84
21 5 0.09
ACGTcount: A:0.38, C:0.20, G:0.32, T:0.10
Consensus pattern (19 bp):
AAGTGCAGAAAGAGGCACG
Found at i:91677760 original size:40 final size:40
Alignment explanation
Indices: 91677713--91677799 Score: 129
Period size: 40 Copynumber: 2.2 Consensus size: 40
91677703 AAAGGCATCA
** * * *
91677713 AAGTGCAGGCAGAGGCACGAATGTGCAATTAGAGGCACCG
1 AAGTGCAGAAAGAGGCACCAAAGTGCAAATAGAGGCACCG
91677753 AAGTGCAGAAAGAGGCACCAAAGTGCAAATAGAGGCACCG
1 AAGTGCAGAAAGAGGCACCAAAGTGCAAATAGAGGCACCG
91677793 AAGTGCA
1 AAGTGCA
91677800 AACCCATACA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.38, C:0.20, G:0.32, T:0.10
Consensus pattern (40 bp):
AAGTGCAGAAAGAGGCACCAAAGTGCAAATAGAGGCACCG
Found at i:91677800 original size:20 final size:20
Alignment explanation
Indices: 91677723--91677801 Score: 108
Period size: 20 Copynumber: 4.0 Consensus size: 20
91677713 AAGTGCAGGC
*
91677723 AGAGGCA-CGAATGTGCAATT
1 AGAGGCACCGAA-GTGCAAAT
91677743 AGAGGCACCGAAGTGCAGAA-
1 AGAGGCACCGAAGTGCA-AAT
*
91677763 AGAGGCACCAAAGTGCAAAT
1 AGAGGCACCGAAGTGCAAAT
91677783 AGAGGCACCGAAGTGCAAA
1 AGAGGCACCGAAGTGCAAA
91677802 CCCATACAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.04
20 46 0.87
21 5 0.09
ACGTcount: A:0.41, C:0.19, G:0.30, T:0.10
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCAAAT
Found at i:91681838 original size:40 final size:40
Alignment explanation
Indices: 91681745--91681861 Score: 112
Period size: 40 Copynumber: 2.8 Consensus size: 40
91681735 CATGAATTTA
* * *
91681745 AGCGGCGCTTTTCCCATAAACGCTGCTAAAGAACATGACCTTT
1 AGCGACGCTTTT-CCAAAAACGCCGCTAAA-AA-ATGACCTTT
*
91681788 AGCAGA-GCTTTTCCTAAAAACACCGCTAAAAAA-GACCTTT
1 AGC-GACGCTTTTCC-AAAAACGCCGCTAAAAAATGACCTTT
* *
91681828 AGCGACGCTTTCTCCACAAACGCCACTAAAAAAT
1 AGCGACGCTTT-TCCAAAAACGCCGCTAAAAAAT
91681862 CTAACTTTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
39 2 0.03
40 30 0.48
41 4 0.06
42 4 0.06
43 21 0.34
44 1 0.02
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (40 bp):
AGCGACGCTTTTCCAAAAACGCCGCTAAAAAATGACCTTT
Found at i:91682530 original size:23 final size:23
Alignment explanation
Indices: 91682485--91683197 Score: 501
Period size: 23 Copynumber: 31.2 Consensus size: 23
91682475 ACATAAACAA
*
91682485 AATTT-CAGCAAC-TAAACAATTC
1 AATTTGCAGC-ACTTAAACACTTC
* *
91682507 AATTTGCAGTACTTAAAAACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
91682530 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
91682553 AATTTGCAGCACTTTAACACTTT
1 AATTTGCAGCACTTAAACACTTC
* * *
91682576 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
91682599 AATTTGCAGCACTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** * * * * *
91682622 AATTAACAACATTTATACTCCTC
1 AATTTGCAGCACTTAAACACTTC
*
91682645 AA-TTACAGCA-TTAAA-ACATCTC
1 AATTTGCAGCACTTAAACAC-T-TC
*
91682667 AATTTCCAGCAAC-TAAACACTTC
1 AATTTGCAGC-ACTTAAACACTTC
* *
91682690 AATTTGCAGTACTTAAACACTCC
1 AATTTGCAGCACTTAAACACTTC
** * *
91682713 AATTTAAAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
91682736 AATTTACAACA-TTCACACACTTC
1 AATTTGCAGCACTT-AAACACTTC
*
91682759 AATTTGCAGCACTTTTAACACTTC
1 AATTTGCAGCAC-TTAAACACTTC
* * *
91682783 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
** * * * *
91682806 AATTAACAACATTTATACACCTC
1 AATTTGCAGCACTTAAACACTTC
* *
91682829 AA-TTACAGCGA-TAAAACA-TCTC
1 AATTTGCAGC-ACTTAAACACT-TC
* *
91682851 AATTTCCAGCAATTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
91682874 AATTTGCAGTACTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
91682897 AATTTGCAGCACTTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
91682920 AATTTACAGCATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
91682943 AATTTGCAGCACTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** * * * *
91682966 AATTAACAACATTTATACACCTC
1 AATTTGCAGCACTTAAACACTTC
* *
91682989 AA-TTACAGCGA-TAAAACA-TCTC
1 AATTTGCAGC-ACTTAAACACT-TC
91683011 AATTT-CGAGCAAC-TAAACACTTC
1 AATTTGC-AGC-ACTTAAACACTTC
* *
91683034 AACTTGCAGTACTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * ** *
91683057 AATTTACAACTTTTAAGCACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
91683080 AATTTACAGCATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
91683103 AATTTACAGCA-TTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
91683125 AATTTGCAGCACTTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
91683148 AATTTACAGCATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
91683171 AATTTGCTGCACTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
91683194 AATT
1 AATT
91683198 AATAACATTT
Statistics
Matches: 549, Mismatches: 111, Indels: 61
0.76 0.15 0.08
Matches are distributed among these distances:
20 1 0.00
21 4 0.01
22 76 0.14
23 439 0.80
24 25 0.05
25 4 0.01
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (23 bp):
AATTTGCAGCACTTAAACACTTC
Found at i:91682554 original size:46 final size:46
Alignment explanation
Indices: 91682497--91683175 Score: 566
Period size: 46 Copynumber: 14.8 Consensus size: 46
91682487 TTTCAGCAAC
* * * * *
91682497 TAAACAATTCAATTTGCAGTACTTAAAAACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCACTTAAACACTTCAATTTACAGCATT
* * * *
91682543 TAAACACTTCAATTTGCAGCACTTTAACACTTTAATTTACAACATT
1 TAAACACTTCAATTTACAGCACTTAAACACTTCAATTTACAGCATT
* * * *
91682589 TAAACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAACAACATT
1 TAAACACTTCAATTTACAGCACTTAAACACT-TCAATTTACAGCATT
* * * * **
91682635 TATACTCCTCAA-TTACAGCA-TTAAA-ACATCTCAATTTCCAGCAAC
1 TAAACACTTCAATTTACAGCACTTAAACAC-T-TCAATTTACAGCATT
* * * * *
91682680 TAAACACTTCAATTTGCAGTACTTAAACACTCCAATTTAAAACATT
1 TAAACACTTCAATTTACAGCACTTAAACACTTCAATTTACAGCATT
* * *
91682726 TAAACACTTCAATTTACAACA-TTCACACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCACTT-AAACACTTCAATTTACAGCA-TT
* * * * *
91682773 TTAACACTTCAATTTACAACATTTAAACACTTCAATTAACAACATT
1 TAAACACTTCAATTTACAGCACTTAAACACTTCAATTTACAGCATT
* * * * *
91682819 TATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAATTTCCAGCAAT
1 TAAACACTTCAATTTACAGC-ACTTAAACACT-TCAATTTACAGCATT
* * *
91682864 TAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCACTTAAACACTTCAATTTACAGCA-TT
* *
91682911 T-AACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCACTTAAACACTTCAATTTACAGCA-TT
* * * * *
91682957 T-AACA-TCTCAATTAACAACATTTATACACCTCAA-TTACAGCGA-T
1 TAAACACT-TCAATTTACAGCACTTAAACACTTCAATTTACAGC-ATT
* * * * *
91683001 AAAACA-TCTCAATTT-CGAGCAAC-TAAACACTTCAACTTGCAGTACT
1 TAAACACT-TCAATTTAC-AGC-ACTTAAACACTTCAATTTACAGCATT
* ** *
91683047 TAAACACTTCAATTTACAACTTTTAAGCACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCACTTAAACACTTCAATTTACAGCATT
* *
91683093 TAAACACTTCAATTTACAGCA-TTTAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCACTTAAACACTTCAATTTACAGCA-TT
*
91683139 T-AACACTTCAATTTACAGCATTTAAACACTTCAATTT
1 TAAACACTTCAATTTACAGCACTTAAACACTTCAATTT
91683176 GCTGCACTTT
Statistics
Matches: 518, Mismatches: 88, Indels: 54
0.78 0.13 0.08
Matches are distributed among these distances:
43 1 0.00
44 7 0.01
45 135 0.26
46 322 0.62
47 49 0.09
48 4 0.01
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (46 bp):
TAAACACTTCAATTTACAGCACTTAAACACTTCAATTTACAGCATT
Found at i:91682667 original size:22 final size:23
Alignment explanation
Indices: 91682614--91682670 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
91682604 GCAGCACTTT
*
91682614 AACATCTCAATTAACAACATTTA
1 AACATCTCAATTAACAACATTAA
* *
91682637 TAC-TCCTCAATT-ACAGCATTAA
1 AACAT-CTCAATTAACAACATTAA
91682659 AACATCTCAATT
1 AACATCTCAATT
91682671 TCCAGCAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.32
Consensus pattern (23 bp):
AACATCTCAATTAACAACATTAA
Found at i:91683041 original size:91 final size:89
Alignment explanation
Indices: 91682525--91683174 Score: 466
Period size: 91 Copynumber: 7.1 Consensus size: 89
91682515 GTACTTAAAA
* * * * * * *
91682525 ACTTCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAACACTTTAATTTACAACA-TT
1 ACTTCAA-TTACAGCATTAAAACACTTCAATTTACAGCAC-TAAACACTTCAATTTGCAGCACTT
* *
91682589 TAAACACTTCAATTTGCAGCACTTTAAC
64 T-AACACTTCAATTTACAACA-TTTAAC
* * * * * * *
91682617 A-TCTCAATTAACAACATTTATACTCCTCAA-TTACAGCATTAAA-ACATCTCAATTTCCAGCAA
1 ACT-TCAATT-ACAGCATTAAAACACTTCAATTTACAGCACTAAACAC-T-TCAATTTGCAGC-A
* * *
91682679 C-TAAACACTTCAATTTGCAGTAC-TTAAAC
61 CTTTAACACTTCAATTTACA--ACATTTAAC
* * * * * * *
91682708 ACTCCAATTTAAAACATTTAAACACTTCAATTTACAACATTCACACACTTCAATTTGCAGCACTT
1 ACTTCAA-TTACAGCATTAAAACACTTCAATTTACAGCACT-AAACACTTCAATTTGCAGCAC-T
91682773 TTAACACTTCAATTTACAACATTTAAAC
63 TTAACACTTCAATTTACAACATTT-AAC
* * * * * *
91682801 ACTTCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TAAA-ACATCTCAATTTCCAGCAA
1 ACTTCAATT-ACAGCATTAAAACACTTCAATTTACAGC-ACTAAACAC-T-TCAATTTGCAGCAC
* * *
91682863 TTAAACACTTCAATTTGCAGTAC-TTAAAC
62 TTTAACACTTCAATTTACA--ACATTTAAC
* * *
91682892 ACTTCAATTTGCAGCACTT-TAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACT
1 ACTTCAA-TTACAGCA-TTAAAACACTTCAATTTACAGCA-CTAAACACTTCAATTTGCAGCACT
*
91682956 TTAACA-TCTCAATTAACAACATTTATAC
63 TTAACACT-TCAATTTACAACATTTA-AC
* * *
91682984 ACCTCAATTACAGCGA-TAAAACA-TCTCAATTT-CGAGCAACTAAACACTTCAACTTGCAGTAC
1 ACTTCAATTACAGC-ATTAAAACACT-TCAATTTAC-AGC-ACTAAACACTTCAATTTGCAGCAC
* *
91683046 TTAAACACTTCAATTTACAACTTTTAAGC
62 TTTAACACTTCAATTTACAACATTTAA-C
* * *
91683075 ACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCATTTAACACTTCAATTTGCAGCACTTT
1 ACTTCAA-TTACAGCATTAAAACACTTCAATTTACAGCACTAAACACTTCAATTTGCAGCACTTT
*
91683140 AACACTTCAATTTACAGCATTTAAAC
65 AACACTTCAATTTACAACATTT-AAC
91683166 ACTTCAATT
1 ACTTCAATT
91683175 TGCTGCACTT
Statistics
Matches: 451, Mismatches: 63, Indels: 90
0.75 0.10 0.15
Matches are distributed among these distances:
89 2 0.00
90 14 0.03
91 230 0.51
92 145 0.32
93 56 0.12
94 4 0.01
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (89 bp):
ACTTCAATTACAGCATTAAAACACTTCAATTTACAGCACTAAACACTTCAATTTGCAGCACTTTA
ACACTTCAATTTACAACATTTAAC
Found at i:91683220 original size:137 final size:136
Alignment explanation
Indices: 91682519--91683208 Score: 623
Period size: 137 Copynumber: 5.0 Consensus size: 136
91682509 TTTGCAGTAC
* * * *
91682519 TTAAAAACTTCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAACACTTTAATTTACA
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCA-TTTAACACTTCAATTTACA
* * ** * * *
91682584 ACATTTAAACACTTCAATTTGCAGCACTTT-AACA-TCTCAATTAACAACA-TTTATACTCCTCA
65 GCATTT-AACACTTCAATTTACAGCA-TTTAAACACT-TCAATTTGCAGCACTTTA-ACACTTCA
*
91682646 A-TTACAGCAT
126 ATTTACAACAT
* * ** * * * * *
91682656 TAAAACA-TCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTCCAATTTAA
1 TTAAACACT-TCAATTTACAGCATTTAAACACTTCAATTTACAGCA-TTTAACACTTCAATTTAC
* * * *
91682720 AACATTTAAACACTTCAATTTACAACATTCACACACTTCAATTTGCAGCACTTTTAACACTTCAA
64 AGCATTT-AACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCAC-TTTAACACTTCAA
91682785 TTTACAACAT
127 TTTACAACAT
* * * * ** *
91682795 TTAAACACTTCAATTAACAACATTTATACACCTCAA-TTACAGCGATAAAACA-TCTCAATTTCC
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGC-ATTTAACACT-TCAATTTAC
* * * *
91682858 AGCAATTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTGCAGCACTTTAACACTTCAAT
64 AGC-ATTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAAT
*
91682923 TTACAGCAT
128 TTACAACAT
* * * *
91682932 TTAAACACTTCAATTTGCAGCACTTT-AACA-TCTCAATTAACAACATTTATACACCTCAA-TTA
1 TTAAACACTTCAATTTACAGCA-TTTAAACACT-TCAATTTACAGCATTTA-ACACTTCAATTTA
** ** * * *
91682994 CAGCGATAAAACA-TCTCAATTT-CGAGCAACTAAACACTTCAACTTGCAGTACTTAAACACTTC
63 CAGC-ATTTAACACT-TCAATTTAC-AGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTC
*
91683057 AATTTACAACTT
125 AATTTACAACAT
* *
91683069 TTAAGCACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCATTTAACACTTCAATTTGCAG
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCATTTAACACTTCAATTTACAG
*
91683134 CACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCTGCACTTTAACA-TCTCAATT
66 CA-TTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACACT-TCAATT
* *
91683198 AATAACAT
129 TACAACAT
91683206 TTA
1 TTA
91683209 TAAACCTCAA
Statistics
Matches: 447, Mismatches: 82, Indels: 48
0.77 0.14 0.08
Matches are distributed among these distances:
136 18 0.04
137 304 0.68
138 82 0.18
139 42 0.09
140 1 0.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (136 bp):
TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCATTTAACACTTCAATTTACAG
CATTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTA
CAACAT
Found at i:91687305 original size:6 final size:7
Alignment explanation
Indices: 91687293--91687338 Score: 78
Period size: 7 Copynumber: 6.9 Consensus size: 7
91687283 AAATATTAAG
91687293 TTTTTTA
1 TTTTTTA
91687300 -TTTTTA
1 TTTTTTA
91687306 -TTTTTA
1 TTTTTTA
91687312 TTTTTTA
1 TTTTTTA
91687319 TTTTTTA
1 TTTTTTA
91687326 TTTTTTA
1 TTTTTTA
91687333 TTTTTT
1 TTTTTT
91687339 TTGAAGATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 12 0.32
7 26 0.68
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTTA
Found at i:91687996 original size:20 final size:20
Alignment explanation
Indices: 91687939--91687996 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
91687929 TAAACCCCAA
91687939 ACCATAAACCATAAA-ATAT
1 ACCATAAACCATAAATATAT
*
91687958 --CATAGACCATAAACT-TAT
1 ACCATAAACCATAAA-TATAT
*
91687976 ACCATAAACCCTAAATATAT
1 ACCATAAACCATAAATATAT
91687996 A
1 A
91687997 TGTATTACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
17 12 0.39
18 3 0.10
19 1 0.03
20 15 0.48
ACGTcount: A:0.52, C:0.22, G:0.02, T:0.24
Consensus pattern (20 bp):
ACCATAAACCATAAATATAT
Found at i:91688667 original size:16 final size:18
Alignment explanation
Indices: 91688628--91688661 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91688618 AGTGTTTATA
91688628 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
91688645 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
91688662 AATTTAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:91688773 original size:13 final size:14
Alignment explanation
Indices: 91688710--91688783 Score: 51
Period size: 15 Copynumber: 5.1 Consensus size: 14
91688700 ATACTACTCT
* *
91688710 AATATAAATATTAA
1 AATATATATATAAA
*
91688724 AATA-ATGTATAAA
1 AATATATATATAAA
* * *
91688737 ATTATTAAATATTAA
1 AATA-TATATATAAA
91688752 AATAATATAATATAAA
1 AAT-ATAT-ATATAAA
*
91688768 AATATATATTTAAA
1 AATATATATATAAA
91688782 AA
1 AA
91688784 ATTTAAAAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 8
0.70 0.17 0.12
Matches are distributed among these distances:
13 9 0.20
14 12 0.27
15 14 0.31
16 10 0.22
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.36
Consensus pattern (14 bp):
AATATATATATAAA
Found at i:91690235 original size:21 final size:21
Alignment explanation
Indices: 91690197--91690236 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91690187 AAATTGTAAA
* * *
91690197 TAAATAAAATATTTAAATAAG
1 TAAATAAAAGAGTAAAATAAG
91690218 TAAATAAAAGAGTAAAATA
1 TAAATAAAAGAGTAAAATA
91690237 TAACATGGGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (21 bp):
TAAATAAAAGAGTAAAATAAG
Found at i:91692299 original size:45 final size:45
Alignment explanation
Indices: 91692142--91692567 Score: 344
Period size: 44 Copynumber: 9.6 Consensus size: 45
91692132 AATTTGGTCC
* * * * *
91692142 ACTGCAACTTCAGCGAGATAAGACTTG-TAGCTTCAATCTGTTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCTCT
* * * * * *
91692186 ATTGCTACTTGAGGGAGATAAGATTTG-TAGCTTCAA-CTTACTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATC-TGCTCT
* * * *
91692230 AATGGAACTTCAGAGAGATAAGATTTGCTATCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCTCT
* * * * ** *
91692275 AATGCAACTTCAGGGGGATGAGATTT-ATGGCTTTAATCTACTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCTCT
** ** *
91692319 ACTGCAACTTCAAAGAGATAAGATTCACTATCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCTCT
* ** *
91692364 ACTGTAACTTCAGGGAGATAAGATTTG-TGGCTTTAATCTACTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCTCT
* * * * * *
91692408 ACTGTAACTTCAAGAAGATAAGATTTACTATCTTCAATCTGCTCA
1 ACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCTCT
* * * * * * *
91692453 ATTACTACTTCAGGGATATTAGATTT-ATAGCTTTAATCTGCTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCTCT
** * *
91692497 ACTGCAACTTCAGAAAGATAAGATTTGCTATATTCAATCTGCTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCTCT
* *
91692542 ACTACAACTTCAGGGA-ATATGATTTG
1 ACTGCAACTTCAGGGAGATAAGATTTG
91692568 TAGCTTCATC
Statistics
Matches: 296, Mismatches: 80, Indels: 12
0.76 0.21 0.03
Matches are distributed among these distances:
43 1 0.00
44 169 0.57
45 125 0.42
46 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (45 bp):
ACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCTCT
Found at i:91692317 original size:89 final size:89
Alignment explanation
Indices: 91692142--91692573 Score: 460
Period size: 89 Copynumber: 4.9 Consensus size: 89
91692132 AATTTGGTCC
* * * * * * * *
91692142 ACTGCAACTTCAGCGAGATAAGACTTG-TAGCTTCAATCTGTTCTATTGCTACTTGAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTCAGGGAGATA
* *
91692206 AGATTTGTAGCTTCAA-CTTACTCT
66 AGATTTATAGCTTTAATC-TACTCT
* * * * *
91692230 AATGGAACTTCAGAGAGATAAGATTTGCTATCTTTAATCTGCTCCAATGCAACTTCAGGGGGATG
1 ACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTCAGGGAGATA
*
91692295 AGATTTATGGCTTTAATCTACTCT
66 AGATTTATAGCTTTAATCTACTCT
* ** * * *
91692319 ACTGCAACTTCAAAGAGATAAGATTCACTATCTTTAATCTGCTCCACTGTAACTTCAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTCAGGGAGATA
* *
91692384 AGATTTGTGGCTTTAATCTACTCT
66 AGATTTATAGCTTTAATCTACTCT
* * * * *
91692408 ACTGTAACTTCA-AGAAGATAAGATTTACTATCTTCAATCTGCT-CAATTACTACTTCAGGGATA
1 ACTGCAACTTCAGAG-AGATAAGATTTGCTATCTTCAATCTGCTCCAA-TGCAACTTCAGGGAGA
* *
91692471 TTAGATTTATAGCTTTAATCTGCTCT
64 TAAGATTTATAGCTTTAATCTACTCT
* * * * *
91692497 ACTGCAACTTCAGAAAGATAAGATTTGCTATATTCAATCTGCTCTACTACAACTTCAGGGA-ATA
1 ACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTCAGGGAGATA
* *
91692561 TGATTTGTAGCTT
66 AGATTTATAGCTT
91692574 CATCTTGCTC
Statistics
Matches: 290, Mismatches: 48, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
88 40 0.14
89 247 0.85
90 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (89 bp):
ACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCAATGCAACTTCAGGGAGATA
AGATTTATAGCTTTAATCTACTCT
Found at i:91701124 original size:38 final size:38
Alignment explanation
Indices: 91701056--91701129 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
91701046 GCACAGCTTG
**
91701056 CGTTTCTACTTCATTATTTCTTGGCCGTGAAATAATTA
1 CGTTTCTACTTCATTATTTCTCAGCCGTGAAATAATTA
**
91701094 CGTTTCTACTTCATTATTTCTCAGTGGTGAAATAAT
1 CGTTTCTACTTCATTATTTCTCAGCCGTGAAATAAT
91701130 CACCATCGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.45
Consensus pattern (38 bp):
CGTTTCTACTTCATTATTTCTCAGCCGTGAAATAATTA
Found at i:91716388 original size:3 final size:3
Alignment explanation
Indices: 91716380--91716415 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
91716370 TTAACATGAG
91716380 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
91716416 GGATGAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:91718196 original size:19 final size:19
Alignment explanation
Indices: 91718172--91718212 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
91718162 TAGACTATTA
91718172 TAAATATAAAAATCAATAT
1 TAAATATAAAAATCAATAT
91718191 TAAATATAAAAATCAATAT
1 TAAATATAAAAATCAATAT
91718210 TAA
1 TAA
91718213 GGTATTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAATATAAAAATCAATAT
Found at i:91719118 original size:22 final size:21
Alignment explanation
Indices: 91719082--91719124 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
91719072 TTCATAAAAG
* *
91719082 ATAAAAATATTAAAATTTATA
1 ATAAAAATATAAAAAATTATA
91719103 ATAAAAATTATAAAAAATTATA
1 ATAAAAA-TATAAAAAATTATA
91719125 CAATTAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
ATAAAAATATAAAAAATTATA
Found at i:91723610 original size:23 final size:23
Alignment explanation
Indices: 91723582--91723626 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
91723572 CCCGAATAAG
* *
91723582 CTTCCCGATAGGCTCTTTGTGAT
1 CTTCCCGAAAGGCTCTGTGTGAT
*
91723605 CTTCCCGAAATGCTCTGTGTGA
1 CTTCCCGAAAGGCTCTGTGTGA
91723627 GTTTTCTGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.16, C:0.27, G:0.22, T:0.36
Consensus pattern (23 bp):
CTTCCCGAAAGGCTCTGTGTGAT
Found at i:91726277 original size:35 final size:35
Alignment explanation
Indices: 91726148--91726277 Score: 111
Period size: 35 Copynumber: 3.6 Consensus size: 35
91726138 GCAAAGTGTG
* *
91726148 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGTA
* *
91726183 AAATGTAAGTATGGTATTATCAAATCCATACTGAGTT-AA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTTGTA
* ** *
91726222 GAAACGTAGGTATGCCATTTCCCATACCGAGTTGTA
1 -AAATGTAGGTATGGTATTTCCCATACTGAGTTGTA
91726258 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
91726278 AATGAGGAAA
Statistics
Matches: 74, Mismatches: 13, Indels: 16
0.72 0.13 0.16
Matches are distributed among these distances:
35 45 0.61
36 1 0.01
39 2 0.03
40 26 0.35
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGTA
Found at i:91730714 original size:18 final size:18
Alignment explanation
Indices: 91730691--91730727 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
91730681 ATCGAACTTC
91730691 TGAGTTTATATGGCTAAA
1 TGAGTTTATATGGCTAAA
91730709 TGAGTTTATATGGCTAAA
1 TGAGTTTATATGGCTAAA
91730727 T
1 T
91730728 TTTAGTGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (18 bp):
TGAGTTTATATGGCTAAA
Found at i:91730976 original size:50 final size:50
Alignment explanation
Indices: 91730901--91731077 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
91730891 CCATGGCAAC
91730901 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATAA
* * * * *
91730951 AAGTGATAAGT-AAATGCTTCGGCTACACTTACCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATA-GCTTCGGCTACACTTATCTGATCAAGGACAAATAA
*
91731001 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATAA
* *
91731051 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
91731078 CTGATCAGTG
Statistics
Matches: 111, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
49 2 0.02
50 83 0.75
51 26 0.23
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATAA
Found at i:91731091 original size:31 final size:31
Alignment explanation
Indices: 91731053--91731201 Score: 210
Period size: 31 Copynumber: 4.8 Consensus size: 31
91731043 ACAAATAACA
91731053 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
** * *
91731084 AGTGAAAAGTGGTAGCTTCTACTACCAGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
91731115 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
91731146 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* *
91731177 AGTGAATAGTGGTAGCTTCAGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
91731202 AAGTGACAAG
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
30 1 0.01
31 99 0.97
32 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:91731328 original size:49 final size:47
Alignment explanation
Indices: 91731223--91731387 Score: 191
Period size: 49 Copynumber: 3.6 Consensus size: 47
91731213 GATTTCCGTA
* * * *
91731223 TAAGACCATATCTGGGATATGGCATCA-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATTCGTG
91731269 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATC-ATATGTGATATGTGATT-CGTG
*
91731318 TAAGACCATAGCTGGGCTATGGCATCGTTATGTGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATC-ATATGTGATATGTGATTCGTG
* *
91731360 TAAGACCATAGTTGGGTTATGGCATCAT
1 TAAGACCATAGCTGGGCTATGGCATCAT
91731388 TATCTGAAGA
Statistics
Matches: 107, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.25
44 1 0.01
45 1 0.01
46 25 0.23
47 1 0.01
48 14 0.13
49 37 0.35
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATTCGTG
Found at i:91731363 original size:42 final size:42
Alignment explanation
Indices: 91731304--91731428 Score: 169
Period size: 42 Copynumber: 3.0 Consensus size: 42
91731294 CAATATGTGA
* * *
91731304 TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGT
1 TATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATCGT
* *
91731346 TATGTGAATATGTGTAAGACCATAGTTGGGTTATGGCATCAT
1 TATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATCGT
* * **
91731388 TATCTGAAGATGTGTAAGACCATAGTTGAACTATGGCATCG
1 TATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATCG
91731429 AGAAAACGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (42 bp):
TATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATCGT
Found at i:91733253 original size:93 final size:93
Alignment explanation
Indices: 91733094--91733265 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
91733084 CGCCCATAAG
* * *
91733094 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91733159 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
91733187 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91733252 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
91733266 ACAAACATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91733262 original size:46 final size:46
Alignment explanation
Indices: 91733087--91733262 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
91733077 TGTAAACCGC
* * *
91733087 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
91733133 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
91733183 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91733226 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
91733263 TGCACAAACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91738941 original size:50 final size:50
Alignment explanation
Indices: 91738875--91739051 Score: 255
Period size: 50 Copynumber: 3.5 Consensus size: 50
91738865 CCATGACAAC
*
91738875 AAGTGATAAATGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGA
* * * *
91738925 AAGTGATAAGTAATAGCTTCGGCTACACTTACCTTATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGA
* * *
91738975 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGA
* *
91739025 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
91739052 CTGATCAGTG
Statistics
Matches: 113, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 89 0.79
51 24 0.21
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGA
Found at i:91739072 original size:31 final size:31
Alignment explanation
Indices: 91739027--91739237 Score: 298
Period size: 31 Copynumber: 6.8 Consensus size: 31
91739017 ACAAATAACA
91739027 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * **
91739058 AGTGAAGAGCGGTAGCTTCTACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* **
91739089 AGTGAAAAGCGGTAGCTTCTACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
91739120 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
91739151 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
91739182 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
91739213 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
91739238 AAGTGACAAG
Statistics
Matches: 163, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
30 1 0.01
31 160 0.98
32 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:91739360 original size:49 final size:48
Alignment explanation
Indices: 91739259--91739420 Score: 169
Period size: 49 Copynumber: 3.5 Consensus size: 48
91739249 GATTTCCGTA
* * * * *
91739259 TAAGACCATATCTGGGATATGACATCAGT-GA-GATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGATTCGTG
* *
91739305 TAAGACCATCGCTGGGCTATGGCATCAATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGATT-CGTG
* * *
91739354 TAAGACCATTGTTGGGCTATGGCATCGATATATGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGATTCGTG
91739396 TAAGACCATAGCTGGGCTATGGCAT
1 TAAGACCATAGCTGGGCTATGGCAT
91739421 TATTATCTGA
Statistics
Matches: 100, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 26 0.26
44 1 0.01
45 1 0.01
46 25 0.25
48 12 0.12
49 35 0.35
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGATTCGTG
Found at i:91739397 original size:42 final size:43
Alignment explanation
Indices: 91739351--91739463 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 43
91739341 ATGTGATTAC
* *
91739351 GTGTAAGACCATTGTTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGATTATATGAAGAT
* * *
91739393 GTGTAAGACCATAGCTGGGCTATGGCAT-TATTATCTGAAGAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGATTATATGAAGAT
**
91739435 GTGTAAGACCATAGTTGAACTATGGCATC
1 GTGTAAGACCATAGTTGGGCTATGGCATC
91739464 AAGAAAACGA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 60 0.98
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATAGTTGGGCTATGGCATCGATTATATGAAGAT
Found at i:91741212 original size:20 final size:20
Alignment explanation
Indices: 91741187--91741224 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
91741177 GTAGTGAGAA
*
91741187 TTTATTTTCTATGAATAAAT
1 TTTATTTTCTAAGAATAAAT
91741207 TTTATTTTCTAAGAATAA
1 TTTATTTTCTAAGAATAA
91741225 TAATTTCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (20 bp):
TTTATTTTCTAAGAATAAAT
Found at i:91745184 original size:38 final size:38
Alignment explanation
Indices: 91745115--91745224 Score: 98
Period size: 38 Copynumber: 2.9 Consensus size: 38
91745105 GATCTTCAAT
* * * ** **
91745115 CACCTCGAAGCTTTGAAATATTAAACAAATCTTCCCTT
1 CACCTTGAAGCTTTGAAGTGTTAAAGGAATCTTCCCAC
*
91745153 CACCTT-AACGCTTTGAAGTGTTAAAGGAATCTTGCCAC
1 CACCTTGAA-GCTTTGAAGTGTTAAAGGAATCTTCCCAC
* *
91745191 CATCTTGAAGTTTTGAAGTGTT-AAGCGAATCTTC
1 CACCTTGAAGCTTTGAAGTGTTAAAG-GAATCTTC
91745225 GCATCATTTT
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
37 5 0.09
38 51 0.88
39 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (38 bp):
CACCTTGAAGCTTTGAAGTGTTAAAGGAATCTTCCCAC
Found at i:91745654 original size:29 final size:29
Alignment explanation
Indices: 91745618--91745687 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
91745608 AGCCCTTTTC
*
91745618 TCACCATGTTGAAATTGTAGGGGTTCTTT
1 TCACCATGTTGAAATTGTAAGGGTTCTTT
*
91745647 TCACCATGTTGAAGTTGTAAGGGTTCTTT
1 TCACCATGTTGAAATTGTAAGGGTTCTTT
*
91745676 TCGCCATGTTGA
1 TCACCATGTTGA
91745688 TGTCACAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (29 bp):
TCACCATGTTGAAATTGTAAGGGTTCTTT
Found at i:91745766 original size:70 final size:71
Alignment explanation
Indices: 91745648--91745866 Score: 239
Period size: 70 Copynumber: 3.1 Consensus size: 71
91745638 GGGTTCTTTT
* * * *
91745648 CACCATGTTGAAGTTGTAAGGGTTCTTTTCGCCATGTTGATGTCACAAAGTTTGGAATG-GGAGC
1 CACCATGTTGAAGTTGTAAGGGTTCTTTACGCCATGTTGATGTTACAAAGTTCGGAATGAGG-CC
91745712 -TCCTCG
65 ATCCTCG
* ** *
91745718 CACCATGTTGAAGTTGTAAGGTTTCTTCCCGCCATTTTGATGTTACAAAGTTCGGAA-GAGGCCA
1 CACCATGTTGAAGTTGTAAGGGTTCTTTACGCCATGTTGATGTTACAAAGTTCGGAATGAGGCCA
*
91745782 TCCTCT
66 TCCTCG
* * * * * * *
91745788 CACCATGTTAAAGTTGCAAGGGTTCTTTATGCGATGTTAATGTTACAAAGTTGGGAATGA-GCCC
1 CACCATGTTGAAGTTGTAAGGGTTCTTTACGCCATGTTGATGTTACAAAGTTCGGAATGAGGCCA
* *
91745852 TCGTCT
66 TCCTCG
91745858 CACCATGTT
1 CACCATGTT
91745867 AACCGGTCAT
Statistics
Matches: 126, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
69 2 0.02
70 122 0.97
71 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (71 bp):
CACCATGTTGAAGTTGTAAGGGTTCTTTACGCCATGTTGATGTTACAAAGTTCGGAATGAGGCCA
TCCTCG
Found at i:91747097 original size:23 final size:21
Alignment explanation
Indices: 91747046--91747097 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 21
91747036 GTTTGTGTTT
*
91747046 TATTTTT-GTTTATTTATTTC
1 TATTTTTAGTTTATATATTTC
*
91747066 AATTCTTTAGTTTATGATATTATC
1 TATT-TTTAGTTTAT-ATATT-TC
91747090 TATTTTTA
1 TATTTTTA
91747098 TTGTTTGTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 3 0.12
21 3 0.12
22 6 0.24
23 8 0.32
24 5 0.20
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (21 bp):
TATTTTTAGTTTATATATTTC
Found at i:91747424 original size:70 final size:70
Alignment explanation
Indices: 91747365--91747676 Score: 297
Period size: 70 Copynumber: 4.5 Consensus size: 70
91747355 AACTTTTTCC
* * * **
91747365 CACCATATTGATGGTGCAAAGTTCGAAATGGGCCTTCCTTTTGCCATGTTGAAGTTGCAAGGGTT
1 CACCATGTTGATGTTGCAAAGTTCGAAATGGGCCTTCCTCTCACCATGTTGAAGTTGCAAGGGTT
91747430 CTTCT
66 CTTCT
* * * *
91747435 CACCATGTTGATGTTGCGAAGTTTGAAATGGTTCC-TCCTCTCACCATGTTAAAGTTGCAAGGGT
1 CACCATGTTGATGTTGCAAAGTTCGAAATGG-GCCTTCCTCTCACCATGTTGAAGTTGCAAGGGT
91747499 TCTTCT
65 TCTTCT
* * * * * *
91747505 CACCATGTTGATGTTACAAAGTTC-AGAATGGGCCTTCGTCCCACCATGTTAAAGTTGTAAAGGT
1 CACCATGTTGATGTTGCAAAGTTCGA-AATGGGCCTTCCTCTCACCATGTTGAAGTTGCAAGGGT
91747569 TCTT-T
65 TCTTCT
* * * * * * * * *
91747574 CCGCCATGTTAATGATGCAAGGTTTGAAATGGGCCCTCCTCTCGCCATTTTGAAGTTGTAAGGGT
1 -CACCATGTTGATGTTGCAAAGTTCGAAATGGGCCTTCCTCTCACCATGTTGAAGTTGCAAGGGT
* *
91747639 TTTTCC
65 TCTTCT
* * * * *
91747645 CACCATGTTAAAGATGCAGAGTTCAAAATGGG
1 CACCATGTTGATGTTGCAAAGTTCGAAATGGG
91747677 TTCTCCATTC
Statistics
Matches: 198, Mismatches: 38, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
69 4 0.02
70 191 0.96
71 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.33
Consensus pattern (70 bp):
CACCATGTTGATGTTGCAAAGTTCGAAATGGGCCTTCCTCTCACCATGTTGAAGTTGCAAGGGTT
CTTCT
Found at i:91747520 original size:35 final size:35
Alignment explanation
Indices: 91747410--91747520 Score: 90
Period size: 35 Copynumber: 3.2 Consensus size: 35
91747400 TCCTTTTGCC
*
91747410 ATGTTGAAGTTGCAAGGGTTCTTCTCACCATGTTG
1 ATGTTAAAGTTGCAAGGGTTCTTCTCACCATGTTG
* * *
91747445 ATGTTGCGAAGTTTGAAATGGTTCCTCCTCTCACC------
1 ATGTT--AAAG-TTGCAAGGGTT-CT--TCTCACCATGTTG
91747480 ATGTTAAAGTTGCAAGGGTTCTTCTCACCATGTTG
1 ATGTTAAAGTTGCAAGGGTTCTTCTCACCATGTTG
91747515 ATGTTA
1 ATGTTA
91747521 CAAAGTTCAG
Statistics
Matches: 59, Mismatches: 5, Indels: 24
0.67 0.06 0.27
Matches are distributed among these distances:
29 7 0.12
31 2 0.03
32 9 0.15
33 3 0.05
35 16 0.27
37 4 0.07
38 9 0.15
39 2 0.03
41 7 0.12
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.37
Consensus pattern (35 bp):
ATGTTAAAGTTGCAAGGGTTCTTCTCACCATGTTG
Found at i:91759746 original size:23 final size:23
Alignment explanation
Indices: 91759719--91759790 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 23
91759709 AATATAATTT
91759719 AACTTATAGAAATTAACTTTTGC
1 AACTTATAGAAATTAACTTTTGC
* * * * **
91759742 AACTTTTACAATTTAGTCTTTTTT
1 AACTTATAGAAATTA-ACTTTTGC
* *
91759766 TACTTATAGAAATTAACTTTGGC
1 AACTTATAGAAATTAACTTTTGC
91759789 AA
1 AA
91759791 ACATTTTGAT
Statistics
Matches: 33, Mismatches: 15, Indels: 2
0.66 0.30 0.04
Matches are distributed among these distances:
23 17 0.52
24 16 0.48
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.44
Consensus pattern (23 bp):
AACTTATAGAAATTAACTTTTGC
Found at i:91761586 original size:42 final size:42
Alignment explanation
Indices: 91761527--91761614 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
91761517 TTCATAATCC
*
91761527 ATTAAATAGTTCAGGTTTTACCATACTTAGATCAAATTGAAT
1 ATTAAATAGTTCAGGTTTTACCATACTTAAATCAAATTGAAT
*
91761569 ATTAAATAGTTCAGGTTTTACCATACTTAAATTAAATTGAAT
1 ATTAAATAGTTCAGGTTTTACCATACTTAAATCAAATTGAAT
91761611 -TTAA
1 ATTAA
91761615 TTAATATTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 4 0.09
42 40 0.91
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (42 bp):
ATTAAATAGTTCAGGTTTTACCATACTTAAATCAAATTGAAT
Found at i:91766086 original size:46 final size:47
Alignment explanation
Indices: 91765991--91766089 Score: 121
Period size: 50 Copynumber: 2.1 Consensus size: 47
91765981 TAATATAAGC
91765991 AAATATTTATATTTATGTAAAACACCATATTTAAATATAAAAAATTAAAT
1 AAATATTTATATTTATGTAAAACACCATATTTAAATAT---AAATTAAAT
* * *
91766041 AAATATTTGTATTTATTTAAAACATCATATTTGAAA-AT-AATTAAAT
1 AAATATTTATATTTATGTAAAACACCATATTT-AAATATAAATTAAAT
91766087 AAA
1 AAA
91766090 CAAGATTTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
46 11 0.24
50 31 0.69
51 3 0.07
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (47 bp):
AAATATTTATATTTATGTAAAACACCATATTTAAATATAAATTAAAT
Found at i:91769032 original size:130 final size:130
Alignment explanation
Indices: 91768799--91769062 Score: 528
Period size: 130 Copynumber: 2.0 Consensus size: 130
91768789 GGTGATAAGT
91768799 ATATATTTCGTGGTCTAAGTGGGAGATTGTTGGATAATACCAACATCACATATATGTGTAGAGAC
1 ATATATTTCGTGGTCTAAGTGGGAGATTGTTGGATAATACCAACATCACATATATGTGTAGAGAC
91768864 TCAAGTAACTAATTTTTAATTAACGATCAACTAAATATAAATTAATGTTAAAGTGCAAAAGTTAC
66 TCAAGTAACTAATTTTTAATTAACGATCAACTAAATATAAATTAATGTTAAAGTGCAAAAGTTAC
91768929 ATATATTTCGTGGTCTAAGTGGGAGATTGTTGGATAATACCAACATCACATATATGTGTAGAGAC
1 ATATATTTCGTGGTCTAAGTGGGAGATTGTTGGATAATACCAACATCACATATATGTGTAGAGAC
91768994 TCAAGTAACTAATTTTTAATTAACGATCAACTAAATATAAATTAATGTTAAAGTGCAAAAGTTAC
66 TCAAGTAACTAATTTTTAATTAACGATCAACTAAATATAAATTAATGTTAAAGTGCAAAAGTTAC
91769059 ATAT
1 ATAT
91769063 TAGGGTTATG
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 134 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.33
Consensus pattern (130 bp):
ATATATTTCGTGGTCTAAGTGGGAGATTGTTGGATAATACCAACATCACATATATGTGTAGAGAC
TCAAGTAACTAATTTTTAATTAACGATCAACTAAATATAAATTAATGTTAAAGTGCAAAAGTTAC
Found at i:91772153 original size:19 final size:20
Alignment explanation
Indices: 91772112--91772158 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
91772102 TAGGTTTTTC
91772112 TTTTTTTTTTGGGTTAGGTT
1 TTTTTTTTTTGGGTTAGGTT
91772132 TTTTTTTTTTGGGTTAGGTT
1 TTTTTTTTTTGGGTTAGGTT
91772152 TTTTTTT
1 TTTTTTT
91772159 GGGAGGGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.04, C:0.00, G:0.21, T:0.74
Consensus pattern (20 bp):
TTTTTTTTTTGGGTTAGGTT
Found at i:91773445 original size:224 final size:225
Alignment explanation
Indices: 91773027--91773987 Score: 1109
Period size: 224 Copynumber: 4.2 Consensus size: 225
91773017 GTGATCTGAA
*
91773027 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
** *
91773092 ATGTGAAC-CAAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTTTTGAAAACAGAAATT
66 ATGT---CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATT
* * * **
91773154 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTG-AAA
128 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGAAAA
91773217 ACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
193 ACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
91773250 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
** *
91773315 ATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATTGA
66 ATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTGAAAACAGAAATTGA
91773380 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTT-AAAAAC
130 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGAAAAAC
*
91773443 AGAAATCGAAATTACCTCAGCGTGTCCCGAG
195 AGAAATTGAAATTACCTCAGCGTGTCCCGAG
91773474 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
** *
91773539 ACT-TCTTGAGGCTCAACTCATTTC-CGCAATATGAGTTGATTTTTTTTT-ACAACAGAAATTGA
66 A-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGA
* * *
91773601 AATTACCTTAGCGTGTCCTGAGGCTCCACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGG
130 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TATT------
* * * **
91773666 CAGAAATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACTAAG
186 ------TTGAAAAACAGAAATTGAAATTACCTCAGCGTGT-CCCGAG
* * * * * * *
91773713 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACA-ACAGAAATTGAAATTACCTCAGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
* * **
91773777 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAA
66 ATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT------------TTGAAA
* * * * *
91773842 TACGGAAATTGAAA-TACCTCAGCGTGTGACCTGATGCTCAACTCGCCGCTCGCAATACGAGTTG
119 -ACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
91773906 ATTTTTTTTGAAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
181 A--TATTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
91773953 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91773988 AAAAAGTAGA
Statistics
Matches: 645, Mismatches: 51, Indels: 67
0.85 0.07 0.09
Matches are distributed among these distances:
220 1 0.00
221 93 0.14
222 9 0.01
223 83 0.13
224 195 0.30
225 3 0.00
237 3 0.00
238 66 0.10
239 60 0.09
240 36 0.06
241 31 0.05
251 2 0.00
252 14 0.02
253 18 0.03
254 31 0.05
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (225 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
ATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAA
ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTTGAAAAACA
GAAATTGAAATTACCTCAGCGTGTCCCGAG
Found at i:91773677 original size:14 final size:14
Alignment explanation
Indices: 91773666--91773692 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91773656 TTTTGAAAGG
91773666 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
91773680 CAGAAATTGAAAA
1 CAGAAATTGAAAA
91773693 TACCTCGGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:91773747 original size:89 final size:88
Alignment explanation
Indices: 91773589--91773766 Score: 241
Period size: 90 Copynumber: 2.0 Consensus size: 88
91773579 TTTTTTTTAC
* * * * * * *
91773589 AACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCCACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTACTAAGGCTCAACTCACCGCTCGCAATACGAGTTGAT
91773654 TTTTTTGA-AAGGCAGAAATTGAAA
66 TTTTTTGACAA--CAGAAATTGAAA
* *
91773678 AACAGAAATTGAAAATACCTCGGCGTGTGACTAAGGCTCAACTCGCCGCTCGCAATACGAGTTGA
1 AACAGAAATTGAAAATACCTCAGCGTGT-ACTAAGGCTCAACTCACCGCTCGCAATACGAGTTGA
91773743 TTTTTTTGACAACAGAAATTGAAA
65 TTTTTTTGACAACAGAAATTGAAA
91773767 TTACCTCAGT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
89 37 0.47
90 39 0.50
91 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (88 bp):
AACAGAAATTGAAAATACCTCAGCGTGTACTAAGGCTCAACTCACCGCTCGCAATACGAGTTGAT
TTTTTTGACAACAGAAATTGAAA
Found at i:91773790 original size:164 final size:165
Alignment explanation
Indices: 91773563--91773987 Score: 701
Period size: 164 Copynumber: 2.6 Consensus size: 165
91773553 AACTCATTTC
* * * *
91773563 CGCAATATGAGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCC
1 CGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
91773628 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACAGAAATTGAAAA
66 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACAGAAATTG-AAA
*
91773693 TACCTCGGCGTGTGA-CTAAGGCTCAACTCGCCGCT
130 TACCTCAGCGTGTGACCTAAGGCTCAACTCGCCGCT
*
91773728 CGCAATACGAGTTGA-TTTTTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCA
1 CGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
** * *
91773792 ACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAATACGGAAATTGAAAT
66 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACAGAAATTGAAAT
* *
91773857 ACCTCAGCGTGTGACCTGATGCTCAACTCGCCGCT
131 ACCTCAGCGTGTGACCTAAGGCTCAACTCGCCGCT
*
91773892 CGCAATACGAGTTGATTTTTTTTGAAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
1 CGCAATACGAGTTGATTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
91773957 AACTCACCTCTCGCAATATGAGTTGATTTTT
65 AACTCACCTCTCGCAATATGAGTTGATTTTT
91773988 AAAAAGTAGA
Statistics
Matches: 241, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
163 17 0.07
164 135 0.56
165 24 0.10
166 65 0.27
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (165 bp):
CGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACAGAAATTGAAAT
ACCTCAGCGTGTGACCTAAGGCTCAACTCGCCGCT
Found at i:91773823 original size:75 final size:74
Alignment explanation
Indices: 91773677--91773842 Score: 208
Period size: 74 Copynumber: 2.2 Consensus size: 74
91773667 AGAAATTGAA
* * * **
91773677 AAACAGAAATTGAAAATACCTCGGCGTGTGACTAAGGCTCAACTCGCCGCTCGCAATACGAGTTG
1 AAACAGAAATTGAAATTACCTCAGCGTGTGACTAAGGCTCAACTCACCGCTCGCAATACGAGTCA
91773742 ATTTTTTTG
66 ATTTTTTTG
* * * * *
91773751 ACAACAGAAATTGAAATTACCTCAGTGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
1 A-AACAGAAATTGAAATTACCTCAGCGTGTGACTAAGGCTCAACTCACCGCTCGCAATACGAGTC
91773815 AATTTTTTTG
65 AATTTTTTTG
91773825 AAAGGCAGAAATTGAAAT
1 AAA--CAGAAATTGAAAT
91773843 ACGGAAATTG
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
73 2 0.03
74 39 0.49
75 38 0.48
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (74 bp):
AAACAGAAATTGAAATTACCTCAGCGTGTGACTAAGGCTCAACTCACCGCTCGCAATACGAGTCA
ATTTTTTTG
Found at i:91773856 original size:14 final size:14
Alignment explanation
Indices: 91773832--91773858 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91773822 TTGAAAGGCA
91773832 GAAATTGAAATACG
1 GAAATTGAAATACG
91773846 GAAATTGAAATAC
1 GAAATTGAAATAC
91773859 CTCAGCGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
GAAATTGAAATACG
Found at i:91773910 original size:90 final size:90
Alignment explanation
Indices: 91773757--91773933 Score: 250
Period size: 90 Copynumber: 2.0 Consensus size: 90
91773747 TTTGACAACA
* * *
91773757 GAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAA-TTTT
1 GAAATTGAAATTACCTCAGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTCAATTTTT
*
91773821 TTTGAAAGGCAGAAATTGAAATACG
66 TTTGAAAGACAGAAATTGAAATACG
* * **
91773846 GAAATTGAAA-TACCTCAGCGTGTGACCTGATGCTCAACTCGCCGCTCGCAATACGAGTTGATTT
1 GAAATTGAAATTACCTCA--GTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTCAATTT
91773910 TTTTTGAAAGACAGAAATTGAAAT
64 TTTTTGAAAGACAGAAATTGAAAT
91773934 TACCTCAGCG
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
88 7 0.09
89 10 0.13
90 35 0.45
91 25 0.32
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (90 bp):
GAAATTGAAATTACCTCAGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTCAATTTTT
TTTGAAAGACAGAAATTGAAATACG
Found at i:91773970 original size:76 final size:76
Alignment explanation
Indices: 91773836--91773987 Score: 225
Period size: 76 Copynumber: 2.0 Consensus size: 76
91773826 AAGGCAGAAA
* * * *
91773836 TTGAAATACGGAAATTGAAATACCTCAGCGTGTGACCTGATGCTCAACTCGCCGCTCGCAATACG
1 TTGAAAGACAGAAATTGAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATACG
91773901 AGTTGATTTTTT
65 AGTTGATTTTTT
* *
91773913 TTGAAAGACAGAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAA-TACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACG
91773977 AGTTGATTTTT
65 AGTTGATTTTT
91773988 AAAAAGTAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
76 37 0.54
77 18 0.26
78 13 0.19
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (76 bp):
TTGAAAGACAGAAATTGAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGA
GTTGATTTTTT
Found at i:91774055 original size:54 final size:55
Alignment explanation
Indices: 91773955--91774060 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
91773945 GTCCTGAGGC
* * *
91773955 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* *
91774009 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
91774061 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 35 0.78
55 10 0.22
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:91774067 original size:13 final size:13
Alignment explanation
Indices: 91774040--91774073 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
91774030 GAGTTGATTC
*
91774040 TTGAACAACATAAA
1 TTGAA-AACAGAAA
91774054 TTGAAAACAGAAA
1 TTGAAAACAGAAA
91774067 TTGAAAA
1 TTGAAAA
91774074 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:91774171 original size:139 final size:141
Alignment explanation
Indices: 91773913--91774172 Score: 445
Period size: 139 Copynumber: 1.9 Consensus size: 141
91773903 TTGATTTTTT
* *
91773913 TTGAAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
91773978 GTTGATTTTTAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
66 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
91774043 AACAACATAAA
131 AACAACATAAA
91774054 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTG-GGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91774117 GCTGATTTTGAAAAAGTAGAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAGT
66 GCTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGT
91774173 CAATTTAAAA
Statistics
Matches: 113, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
139 76 0.67
140 31 0.27
141 6 0.05
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (141 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
AACAACATAAA
Found at i:91774287 original size:71 final size:70
Alignment explanation
Indices: 91774144--91774319 Score: 212
Period size: 71 Copynumber: 2.5 Consensus size: 70
91774134 AGAAATTAAA
* * * * * *
91774144 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAATTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
91774208 CCCCG
66 CCCCG
91774213 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAATTAAAAATACCTCAACGT
* **
91774278 GTCTTG
65 GCCCCG
* * *
91774284 AGGCCCAACTTA-TCTCTTGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
91774320 CCTTGAAAAG
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.07
71 60 0.65
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
CCCCG
Found at i:91782596 original size:12 final size:12
Alignment explanation
Indices: 91782576--91782611 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
91782566 TGGGATATGC
*
91782576 AATGTATGAATG
1 AATGCATGAATG
91782588 AATGCATGAATG
1 AATGCATGAATG
91782600 AATGCATGAATG
1 AATGCATGAATG
91782612 TCAAAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:91784321 original size:27 final size:28
Alignment explanation
Indices: 91784273--91784326 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
91784263 TAAAATAGGA
* *
91784273 AAAATAATATATTTGGTAATAATAATAT
1 AAAATAATATATATGGTAATAAAAATAT
91784301 AAAATAATA-ATAT-GTACATAAAAATA
1 AAAATAATATATATGGTA-ATAAAAATA
91784327 CATATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.13
27 11 0.48
28 9 0.39
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (28 bp):
AAAATAATATATATGGTAATAAAAATAT
Found at i:91785207 original size:51 final size:50
Alignment explanation
Indices: 91785152--91785251 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 50
91785142 GGTTTCTTGG
* *
91785152 TTTTTATTTGGGGTTAG-GTTTTTCTTTTTTTTTTTGGGTTAGGTTTTTTC
1 TTTTT-TTTTGGGTTAGAGTTTTTCTCTTTTTTTTTGGGTTAGGTTTTTTC
* *
91785202 TTTTTTTTTTGGTTAGATTTTTTTCTCTTTTTTTTTGGGTTAGGTTTTTT
1 TTTTTTTTTGGGTTAGA-GTTTTTCTCTTTTTTTTTGGGTTAGGTTTTTT
91785252 TTGGGAGGGC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
49 9 0.20
50 5 0.11
51 30 0.68
ACGTcount: A:0.06, C:0.04, G:0.19, T:0.71
Consensus pattern (50 bp):
TTTTTTTTTGGGTTAGAGTTTTTCTCTTTTTTTTTGGGTTAGGTTTTTTC
Found at i:91785251 original size:26 final size:25
Alignment explanation
Indices: 91785152--91785251 Score: 132
Period size: 25 Copynumber: 4.0 Consensus size: 25
91785142 GGTTTCTTGG
* *
91785152 TTTTTATTTGGGGTTAGG-TTTTTC
1 TTTTTTTTTTGGGTTAGGTTTTTTC
91785176 TTTTTTTTTTTGGGTTAGGTTTTTTC
1 -TTTTTTTTTTGGGTTAGGTTTTTTC
*
91785202 TTTTTTTTTT-GGTTAGATTTTTTTC
1 TTTTTTTTTTGGGTTAG-GTTTTTTC
91785227 TCTTTTTTTTTGGGTTAGGTTTTTT
1 T-TTTTTTTTTGGGTTAGGTTTTTT
91785252 TTGGGAGGGC
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
24 6 0.09
25 34 0.51
26 21 0.31
27 6 0.09
ACGTcount: A:0.06, C:0.04, G:0.19, T:0.71
Consensus pattern (25 bp):
TTTTTTTTTTGGGTTAGGTTTTTTC
Found at i:91799219 original size:30 final size:30
Alignment explanation
Indices: 91799185--91799244 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
91799175 AAATTTTTTT
* * *
91799185 AAAAGACTAAAAGTCAAATTAAACAAAATA
1 AAAAGAATAAAAATCAAATTAAAAAAAATA
91799215 AAAAGAATAAAAATCAAATTAAAAAAAATA
1 AAAAGAATAAAAATCAAATTAAAAAAAATA
91799245 TAAACATTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.72, C:0.07, G:0.05, T:0.17
Consensus pattern (30 bp):
AAAAGAATAAAAATCAAATTAAAAAAAATA
Found at i:91810722 original size:35 final size:35
Alignment explanation
Indices: 91810675--91810742 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
91810665 ATAATGGTGT
*
91810675 GCCCAACACTAGTCAGATAAACTGACAAAGATTAC
1 GCCCAACACTAGTCAGATAAACCGACAAAGATTAC
* *
91810710 GCCCAACGCTAGTCGGATAAACCGACAAAGATT
1 GCCCAACACTAGTCAGATAAACCGACAAAGATT
91810743 TGATACAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.40, C:0.26, G:0.18, T:0.16
Consensus pattern (35 bp):
GCCCAACACTAGTCAGATAAACCGACAAAGATTAC
Found at i:91820624 original size:57 final size:57
Alignment explanation
Indices: 91820554--91820665 Score: 206
Period size: 57 Copynumber: 2.0 Consensus size: 57
91820544 TGGTGTAGCA
*
91820554 GATTAAATTAGTTTTCACATTTAAGGAGCTTGAATACAAGAATTTTAGTTATATTTT
1 GATTAAACTAGTTTTCACATTTAAGGAGCTTGAATACAAGAATTTTAGTTATATTTT
*
91820611 GATTAAACTAGTTTTCACATTTAAGGAGCTTGAATACAAGAATTTTCGTTATATT
1 GATTAAACTAGTTTTCACATTTAAGGAGCTTGAATACAAGAATTTTAGTTATATT
91820666 CTAATTCAGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (57 bp):
GATTAAACTAGTTTTCACATTTAAGGAGCTTGAATACAAGAATTTTAGTTATATTTT
Found at i:91826519 original size:35 final size:35
Alignment explanation
Indices: 91826480--91826656 Score: 223
Period size: 35 Copynumber: 5.1 Consensus size: 35
91826470 CATGAAAAAA
* *
91826480 TTATGACATGTAGGTATGGTATTATCCGTACTGAG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
*
91826515 TTATGACACGTAAGTATGGTATTATCCATACTGAG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
*
91826550 TTATGATACGTAGGTATGGTATTATCCATACTGA-
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
* * * *
91826584 TCTATAATACGTAGGTATGGTATT-TCCCATTCCGAG
1 T-TATGACACGTAGGTATGGTATTAT-CCATACTGAG
* * *
91826620 TTGTGAAACGTAGGTATGGTATTAACCATACTGAG
1 TTATGACACGTAGGTATGGTATTATCCATACTGAG
91826655 TT
1 TT
91826657 GTGAATTGTG
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
34 2 0.02
35 121 0.98
36 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (35 bp):
TTATGACACGTAGGTATGGTATTATCCATACTGAG
Found at i:91835386 original size:23 final size:23
Alignment explanation
Indices: 91835360--91835403 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
91835350 AAGATGTGAA
91835360 AGTGTCATGGTGTTGAATAATTG
1 AGTGTCATGGTGTTGAATAATTG
91835383 AGTGTCATGGTGTTGAATAAT
1 AGTGTCATGGTGTTGAATAAT
91835404 GAAGATGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.05, G:0.30, T:0.39
Consensus pattern (23 bp):
AGTGTCATGGTGTTGAATAATTG
Found at i:91836951 original size:49 final size:49
Alignment explanation
Indices: 91836840--91836974 Score: 146
Period size: 49 Copynumber: 2.7 Consensus size: 49
91836830 ATACACACCA
* * *
91836840 ATCTGGTTAGCAACTACCATGCCCTACTAGTGGCCTATCATATTCTTCC
1 ATCTGGTTAGCAACTAACATGCCCTACTAGTGGCCTAGCATATTCTGCC
* * * *
91836889 ATCTAGCTAGCAACTAGCATGCCCTACTAGTGGTCTAGCATA-TCTGCC
1 ATCTGGTTAGCAACTAACATGCCCTACTAGTGGCCTAGCATATTCTGCC
* * * *
91836937 ATTTTGGTTTGCAACTAACATCCCCTATTAGTGTGCCT
1 A-TCTGGTTAGCAACTAACATGCCCTACTAGTG-GCCT
91836975 TCATATCTGG
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
48 6 0.09
49 61 0.87
50 3 0.04
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (49 bp):
ATCTGGTTAGCAACTAACATGCCCTACTAGTGGCCTAGCATATTCTGCC
Found at i:91848218 original size:20 final size:20
Alignment explanation
Indices: 91848195--91848238 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
91848185 TATACTTTTG
91848195 TACCTTTATCAAAATATCAA
1 TACCTTTATCAAAATATCAA
* **
91848215 TACCTTTATCCAGGTATCAA
1 TACCTTTATCAAAATATCAA
91848235 TACC
1 TACC
91848239 ATTTTACTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (20 bp):
TACCTTTATCAAAATATCAA
Found at i:91861361 original size:21 final size:23
Alignment explanation
Indices: 91861335--91861378 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
91861325 TTAATTATAG
91861335 AATAAA-TTATTAATTT-TTATT
1 AATAAATTTATTAATTTATTATT
*
91861356 AATAAATTTATTTATTTATTATT
1 AATAAATTTATTAATTTATTATT
91861379 GGGAATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 9 0.45
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
AATAAATTTATTAATTTATTATT
Found at i:91861386 original size:26 final size:23
Alignment explanation
Indices: 91861329--91861379 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
91861319 TATTTCTTAA
*
91861329 TTATAGAATAAA-TTATTAATTT
1 TTATTGAATAAATTTATTAATTT
*
91861351 TTATT-AATAAATTTATTTATTT
1 TTATTGAATAAATTTATTAATTT
91861373 ATTATTG
1 -TTATTG
91861380 GGAATAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 6 0.25
22 13 0.54
23 5 0.21
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (23 bp):
TTATTGAATAAATTTATTAATTT
Found at i:91869249 original size:3 final size:3
Alignment explanation
Indices: 91869236--91869299 Score: 119
Period size: 3 Copynumber: 21.3 Consensus size: 3
91869226 TTATTGTTCG
*
91869236 TGT TAT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
91869284 TGT TGT TGT TGT TGT T
1 TGT TGT TGT TGT TGT T
91869300 ATTATTATTA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.02, C:0.00, G:0.31, T:0.67
Consensus pattern (3 bp):
TGT
Found at i:91889256 original size:14 final size:14
Alignment explanation
Indices: 91889237--91889268 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
91889227 ATTTCTCCCT
*
91889237 TTTCTTTTTCTTTC
1 TTTCTTTTTCCTTC
91889251 TTTCTTTTTCCTTC
1 TTTCTTTTTCCTTC
91889265 TTTC
1 TTTC
91889269 CTTCCCCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTCTTTTTCCTTC
Found at i:91892725 original size:45 final size:44
Alignment explanation
Indices: 91892623--91893029 Score: 363
Period size: 45 Copynumber: 9.1 Consensus size: 44
91892613 ATGGTGAATT
* * *
91892623 TTATCTCCCTCAAGTT-CTAGTGGAGTAGATT-AAAACCACAAATC
1 TTATCTCCCTGAAGTTGC-AGTGGAGCAGATTGAAAA-TACAAATC
* * ** * *
91892667 TTATCACCTTGAAGTTATAGTGGAGTAGATTGAAAATAGCAAATT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATA-CAAATC
* * *
91892712 TTATCTCCCTGAAGTTACAGTAGAGCAGATT-AAAGTTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-ATACAAATC
* * * * *
91892756 TTCTCTCCCTGAAGTTGCAGTGGGGCACATTGAAGATAGAAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATA-CAAATC
* * * * **
91892801 TTATCTCTCTAAAGTTGTAGTAGAGCAGATTGAAGTTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATACAAATC
* * ** *
91892845 TTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAAGCCAAAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-ATACAAATC
* * *
91892890 TTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAAATAGCAAATA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATA-CAAATC
* * * *
91892935 TTATCTTCCTGAAGTTGCAGTAGAGCAGATT-AAAACCATAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA-TACAAATC
* **
91892979 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGATGATAACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAAT-ACAAATC
91893024 TTATCT
1 TTATCT
91893030 TTTTGATGTT
Statistics
Matches: 294, Mismatches: 58, Indels: 21
0.79 0.16 0.06
Matches are distributed among these distances:
44 135 0.46
45 159 0.54
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATACAAATC
Found at i:91893023 original size:134 final size:133
Alignment explanation
Indices: 91892706--91893058 Score: 395
Period size: 134 Copynumber: 2.6 Consensus size: 133
91892696 TTGAAAATAG
* * * * * * *
91892706 CAAATTTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGTTACAAATCTTCTCTCCCTGAAGT
1 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGTAACAAATCTTATCTTCTTGAAGT
* * * * * * *
91892771 TGCAGTGGGGCACATTGAAGATAGAAAATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATTGAAG
66 TGCAGTGGAGCAGATTGAAAATAGAAAATATTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAA
**
91892836 TTA
131 CCA
* *
91892839 CAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAAGCCAA-AAATCTTATCTTCTTGAA
1 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTG-AAG-TAACAAATCTTATCTTCTTGAA
* *
91892903 GTTGCAGTGGAGCAGATTGAAAATAGCAAATATTATCT-TCCTGAAGTTGCAGTAGAGCAGATTA
64 GTTGCAGTGGAGCAGATTGAAAATAGAAAATATTATCTCT-CTAAAGTTGCAGTAGAGCAGATTA
91892967 AAACCA
128 AAACCA
* * * * * *
91892973 TAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGATGATAACAAATCTTATCTTTTTGATG
1 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAG-TAACAAATCTTATCTTCTTGAAG
** *
91893038 TTGCAGCAGAGTAGATTGAAA
65 TTGCAGTGGAGCAGATTGAAA
91893059 TTACAGTTCC
Statistics
Matches: 184, Mismatches: 32, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
133 39 0.21
134 144 0.78
135 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (133 bp):
CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGTAACAAATCTTATCTTCTTGAAGT
TGCAGTGGAGCAGATTGAAAATAGAAAATATTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAA
CCA
Found at i:91893030 original size:89 final size:88
Alignment explanation
Indices: 91892660--91893058 Score: 345
Period size: 89 Copynumber: 4.5 Consensus size: 88
91892650 GATTAAAACC
* * ** * * * *
91892660 ACAAATCTTATCACCTTGAAGTTATAGTGGAGTAGATTGAAAA-TAGCAAATTTTATCTCCCTGA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAAACCA--AAATCTTATCTCCCTGA
* * *
91892724 AGTTACAGTAGAGCAGATTAAAGTT
64 AGTTGCAGTAGAGCAGATTGAAGTA
* * * * * * *
91892749 ACAAATCTTCTCTCCCTGAAGTTGCAGTGGGGCACATTGAAGATA-GAAAATCTTATCTCTCTAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAA-A-ACCAAAATCTTATCTCCCTGA
* *
91892813 AGTTGTAGTAGAGCAGATTGAAGTT
64 AGTTGCAGTAGAGCAGATTGAAGTA
* * * * * *
91892838 ACAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAAGCCAAAAATCTTATCTTCTTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAAACC-AAAATCTTATCTCCCTGAA
* *
91892903 GTTGCAGTGGAGCAGATTGAAAATA
65 GTTGCAGTAGAGCAGATTG-AAGTA
* * *
91892928 GCAAATATTATCTTCCTGAAGTTGCAGTAGAGCAGATT-AAAACCATAAATCTTATCTCCCTGAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAAACCA-AAATCTTATCTCCCTGAA
* * *
91892992 GTTGCAGTGGAGTAGATTGATGATA
65 GTTGCAGTAGAGCAGATTGAAG-TA
*** * * *
91893017 ACAAATCTTATCTTTTTGATGTTGCAGCAGAGTAGATTGAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAA
91893059 TTACAGTTCC
Statistics
Matches: 253, Mismatches: 49, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
88 3 0.01
89 209 0.83
90 39 0.15
91 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (88 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAAACCAAAATCTTATCTCCCTGAAG
TTGCAGTAGAGCAGATTGAAGTA
Found at i:91893041 original size:45 final size:45
Alignment explanation
Indices: 91892660--91893084 Score: 317
Period size: 45 Copynumber: 9.5 Consensus size: 45
91892650 GATTAAAACC
* ** * *
91892660 ACAAATCTTATC-ACCTTGAAGTTATAGTGGAGTAGATTGAAAATA
1 ACAAATCTTATCTTCC-TGAAGTTGCAGTAGAGCAGATTGAAAATA
* * * * * *
91892705 GCAAATTTTATCTCCCTGAAGTTACAGTAGAGCAGATT-AAAGTT
1 ACAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAAATA
* * * * * *
91892749 ACAAATCTTCTCTCCCTGAAGTTGCAGTGGGGCACATTGAAGATA
1 ACAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAAATA
* * * *
91892794 GA-AAATCTTATC-TCTCTAAAGTTGTAGTAGAGCAGATTG-AAGTT
1 -ACAAATCTTATCTTC-CTGAAGTTGCAGTAGAGCAGATTGAAAATA
* * * * **
91892838 ACAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAAGCCA
1 ACAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAA-ATA
* *
91892884 A-AAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAAATA
1 ACAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAAATA
* * **
91892928 GCAAATATTATCTTCCTGAAGTTGCAGTAGAGCAGATT-AAAACC
1 ACAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAAATA
* * * * **
91892972 ATAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGATGATA
1 ACAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAAATA
** * * * *
91893017 ACAAATCTTATCTTTTTGATGTTGCAGCAGAGTAGATTG-AAATT
1 ACAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAAATA
** * *
91893061 ACAGTTCCTATATTCCTGAAGTTG
1 ACAAATCTTATCTTCCTGAAGTTG
91893085 TAGTCGATTA
Statistics
Matches: 296, Mismatches: 74, Indels: 21
0.76 0.19 0.05
Matches are distributed among these distances:
43 1 0.00
44 125 0.42
45 166 0.56
46 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (45 bp):
ACAAATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAAATA
Found at i:91897380 original size:45 final size:44
Alignment explanation
Indices: 91897324--91897749 Score: 287
Period size: 45 Copynumber: 9.5 Consensus size: 44
91897314 TTAGACGGGG
* *
91897324 AGCAAATCGAAGATAGCAGATCTAACATTCATGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * *
91897369 AGCAGATCGAAGAT-GACAGATTTGGCA-TCTTTGTATTAGATGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACATTCTGTGT-TTACAT-CGA
*
91897414 AGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * *
91897459 AGCAGATCGAAGAT-GACAGATTTGGCGTCTCTGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCTGTGTTTACATC--GA
91897504 AGCAGATCGAAGATAGCAGATCTGACATT-TGTGTGTTCACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTCTGTGT-TT-ACATCGA
* * * * * * *
91897549 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATAGCAGATCTGACAT-TCTGTGTTTACATC--GA
* *
91897594 AGCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTGCATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * * ** ***
91897639 AGCAGATCGAAAAT-GATAGATTTGGCGTCTCTGTATCAGACGGGGA
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCTGTGT-TTACATCGA
*
91897685 A-CAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
91897729 AGCAGATCGAAGATAGCAGAT
1 AGCAGATCGAAGATAGCAGAT
91897750 TTGGCGTCTC
Statistics
Matches: 283, Mismatches: 70, Indels: 56
0.69 0.17 0.14
Matches are distributed among these distances:
43 9 0.03
44 26 0.09
45 215 0.76
46 24 0.08
47 9 0.03
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.26
Consensus pattern (44 bp):
AGCAGATCGAAGATAGCAGATCTGACATTCTGTGTTTACATCGA
Found at i:91897430 original size:90 final size:90
Alignment explanation
Indices: 91897273--91897788 Score: 766
Period size: 90 Copynumber: 5.7 Consensus size: 90
91897263 TCTGACATTA
* * * * * *
91897273 ACATTGAAGCATATCGAA-ATGATAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGA
1 ACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGA
* *
91897337 TAGCAGATCTAACATTCATGTGTTT
66 TAGCAGATCTGACATTCGTGTGTTT
* * *
91897362 ACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTTTGTATTAGATGGGGAGCAGATCAAAGA
1 ACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGA
*
91897427 TAGCAGATCTGACATTCATGTGTTT
66 TAGCAGATCTGACATTCGTGTGTTT
*
91897452 ACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGA
1 ACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGA
* *
91897517 TAGCAGATCTGACATTTGTGTGTTC
66 TAGCAGATCTGACATTCGTGTGTTT
*
91897542 ACATCGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGA
1 ACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGA
91897607 TAGCAGATCTGACATTCGTGTGTTT
66 TAGCAGATCTGACATTCGTGTGTTT
* * * * * * *
91897632 GCATCGAAGCAGATCGAAAATGATAGATTTGGCGTCTCTGTATCAGACGGGGAACAGGTCGAAGA
1 ACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGA
91897697 TAGCAGATCTGACATTCGTGTGTTT
66 TAGCAGATCTGACATTCGTGTGTTT
* * * *
91897722 ACATCGAAGCAGATCGAAGAT-AGCAGATTTGGCGTCTCTGTATTTGATGGGAAGCAGATCAAGG
1 ACATCGAAGCAGATCGAAGATGA-CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAG
91897786 ATA
65 ATA
91897789 TTAACATGGC
Statistics
Matches: 387, Mismatches: 38, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
89 17 0.04
90 370 0.96
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (90 bp):
ACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGA
TAGCAGATCTGACATTCGTGTGTTT
Found at i:91897548 original size:180 final size:179
Alignment explanation
Indices: 91897149--91897788 Score: 869
Period size: 180 Copynumber: 3.6 Consensus size: 179
91897139 TGTATTGACG
* * *
91897149 TTAGATGGGGAGCATATCGAAGATAGTAGATCTGACATTCGTGTG------TCGAAGCAGATCGA
1 TTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGA
* * * * * *
91897208 AGATGACAGATGTGACGTCTCTGTATTAGACGGAGAGTAAATCGAAGATAGCAGATCTGACATT-
66 AGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTC
* * *
91897272 A-------ACATTGAAGCATATCGAAATGATAGATTTGGCATCTCTGTA
131 ATGTGTTTACATCGAAGCAGATCGAAATGATAGATTTGGCGTCTCTGTA
* * *
91897314 TTAGACGGGGAGCAAATCGAAGATAGCAGATCTAACATTCATGTGTTTACATCGAAGCAGATCGA
1 TTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGA
* * *
91897379 AGATGACAGATTTGGCATCTTTGTATTAGATGGGGAGCAGATCAAAGATAGCAGATCTGACATTC
66 AGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTC
*
91897444 ATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTA
131 ATGTGTTTACATCGAAGCAGATCGAA-ATGATAGATTTGGCGTCTCTGTA
* *
91897494 TTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTTGTGTGTTCACATCGAAGCAGATCGA
1 TTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGA
*
91897559 AGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTC
66 AGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTC
* *
91897624 GTGTGTTTGCATCGAAGCAGATCGAAAATGATAGATTTGGCGTCTCTGTA
131 ATGTGTTTACATCGAAGCAGATCG-AAATGATAGATTTGGCGTCTCTGTA
* * *
91897674 TCAGACGGGGAACAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGA
1 TTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGA
* * * *
91897739 AGAT-AGCAGATTTGGCGTCTCTGTATTTGATGGGAAGCAGATCAAGGATA
66 AGATGA-CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATA
91897789 TTAACATGGC
Statistics
Matches: 419, Mismatches: 39, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
165 40 0.10
171 69 0.16
172 1 0.00
179 17 0.04
180 290 0.69
181 2 0.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (179 bp):
TTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGA
AGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTC
ATGTGTTTACATCGAAGCAGATCGAAATGATAGATTTGGCGTCTCTGTA
Found at i:91899220 original size:29 final size:29
Alignment explanation
Indices: 91899188--91899244 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
91899178 TTTTAATCCT
* * *
91899188 TTTTAATTTTTTTATATATAATTTATTTA
1 TTTTAAATATTTTATATATAATCTATTTA
*
91899217 TTTTAAATATTTTATATATTATCTATTT
1 TTTTAAATATTTTATATATAATCTATTT
91899245 TTACTATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (29 bp):
TTTTAAATATTTTATATATAATCTATTTA
Found at i:91899314 original size:21 final size:21
Alignment explanation
Indices: 91899280--91899454 Score: 96
Period size: 20 Copynumber: 8.2 Consensus size: 21
91899270 TAAAAAATTA
91899280 TTATATA-TA-TTATTTTTAT
1 TTATATATTATTTATTTTTAT
*
91899299 TTATGTATTATTTATTATATTAT
1 TTATATATTATTTATT-T-TTAT
* * *
91899322 TTATATTTTATATATTATTAT
1 TTATATATTATTTATTTTTAT
*
91899343 TTATATA-T-TTTATTATATAT
1 TTATATATTATTTATT-TTTAT
* * *
91899363 TATATCATTTTATTATATATATAT
1 T-TAT-ATATTATT-TATTTTTAT
91899387 TCATATATATTATTT-TATTTTA-
1 T--TATATATTATTTAT-TTTTAT
*
91899409 TTATATATTATATTA-TATTA-
1 TTATATATTAT-TTATTTTTAT
* *
91899429 TTATTTATTATTTATTATTAT
1 TTATATATTATTTATTTTTAT
*
91899450 GTATA
1 TTATA
91899455 ATTTTAAAAA
Statistics
Matches: 122, Mismatches: 18, Indels: 30
0.72 0.11 0.18
Matches are distributed among these distances:
19 14 0.11
20 36 0.30
21 23 0.19
22 5 0.04
23 22 0.18
24 15 0.12
25 7 0.06
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (21 bp):
TTATATATTATTTATTTTTAT
Found at i:91899331 original size:34 final size:34
Alignment explanation
Indices: 91899277--91899449 Score: 162
Period size: 33 Copynumber: 5.0 Consensus size: 34
91899267 ATGTAAAAAA
91899277 TTATTATA-TATATTAT-TTTTATTTATGTATTAT
1 TTATTATATTATATTATATTTTATTTAT-TATTAT
*
91899310 TTATTATATTAT-TTATATTTTATATATTATTAT
1 TTATTATATTATATTATATTTTATTTATTATTAT
* * *
91899343 TTA-TATATTTTATTATATATTATATCATT-TTAT
1 TTATTATATTATATTATATTTTAT-TTATTATTAT
91899376 TATATATATATTCATATATATTATTTTA-TT-TTATTAT
1 T-TAT-TATATT-ATAT-TA-TATTTTATTTATTATTAT
*
91899413 ATATTATATTATATTATTATTTATTATTTATTATTAT
1 TTATTATATTATATTA-TA-TT-TTATTTATTATTAT
91899450 GTATAATTTT
Statistics
Matches: 116, Mismatches: 9, Indels: 26
0.77 0.06 0.17
Matches are distributed among these distances:
32 7 0.06
33 41 0.35
34 23 0.20
35 9 0.08
36 13 0.11
37 15 0.13
38 2 0.02
39 6 0.05
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.65
Consensus pattern (34 bp):
TTATTATATTATATTATATTTTATTTATTATTAT
Found at i:91899362 original size:44 final size:44
Alignment explanation
Indices: 91899278--91899446 Score: 159
Period size: 44 Copynumber: 3.8 Consensus size: 44
91899268 TGTAAAAAAT
*
91899278 TATTATATATATTATT-TTTATTTATGTATTATTTATTATATTATTTA
1 TATTATATATATTATTATTTATATAT-T-TTA-TTA-TATATTATTTA
* *
91899325 TATTTTATATATTATTATTTATATATTTTATTATATATTATATCA
1 TATTATATATATTATTATTTATATATTTTATTATATATTAT-TTA
* * * * *
91899370 TTTTAT-TATA-TATATATTCATATATATTATTTTATTTTATTATA
1 TATTATATATATTAT-TATTTATATATTTTATTATATATTATT-TA
91899414 TATTATATTATATTATTATTTAT-TA-TTTATTAT
1 TATTATA-TATATTATTATTTATATATTTTATTAT
91899447 TATGTATAAT
Statistics
Matches: 101, Mismatches: 14, Indels: 17
0.77 0.11 0.13
Matches are distributed among these distances:
43 4 0.04
44 46 0.46
45 11 0.11
46 13 0.13
47 19 0.19
48 8 0.08
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (44 bp):
TATTATATATATTATTATTTATATATTTTATTATATATTATTTA
Found at i:91899412 original size:54 final size:52
Alignment explanation
Indices: 91899278--91899449 Score: 187
Period size: 54 Copynumber: 3.3 Consensus size: 52
91899268 TGTAAAAAAT
*
91899278 TATTATATATATTATTTTTATTTATGTATTATTTATTATATTATTTATATT-TTATA
1 TATTATATATATTA-TTTTA-TT-T-TATTATATATTATATTATTT-TATTATTATA
* *
91899334 TATTAT-TAT-TTA-TATATTTTATTATATATTATATCATTTTATTATATATA
1 TATTATATATATTATTTTATTTTATTATATATTATATTATTTTATTAT-TATA
*
91899384 TATTCATATATATTATTTTATTTTATTATATATTATATTATATTATTATT-TA
1 TATT-ATATATATTATTTTATTTTATTATATATTATATTATTTTATTATTATA
91899436 TTATT-TAT-TATTAT
1 -TATTATATATATTAT
91899450 GTATAATTTT
Statistics
Matches: 103, Mismatches: 6, Indels: 20
0.80 0.05 0.16
Matches are distributed among these distances:
48 4 0.04
49 19 0.18
50 15 0.15
51 7 0.07
52 8 0.08
53 8 0.08
54 33 0.32
55 3 0.03
56 6 0.06
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.65
Consensus pattern (52 bp):
TATTATATATATTATTTTATTTTATTATATATTATATTATTTTATTATTATA
Found at i:91899458 original size:17 final size:15
Alignment explanation
Indices: 91899276--91899454 Score: 108
Period size: 17 Copynumber: 11.6 Consensus size: 15
91899266 TATGTAAAAA
*
91899276 ATTATTATATATATT
1 ATTATTATATTTATT
91899291 ATT-TT-TATTTATGT
1 ATTATTATATTTAT-T
91899305 ATTATT-TA-TTA-T
1 ATTATTATATTTATT
91899317 ATTATTTATATTTTATAT
1 ATTA-TTATA-TTTAT-T
91899335 ATTATTAT-TTATATAT
1 ATTATTATATT-TAT-T
*
91899351 TTTATTATATATTA-T
1 ATTATTATAT-TTATT
* *
91899366 ATCATTTTA-TTATAT
1 ATTATTATATTTAT-T
*
91899381 ATATATTCATATATATT
1 AT-TATT-ATATTTATT
91899398 ATT-TTAT-TTTATT
1 ATTATTATATTTATT
91899411 ATATATTATATTATATT
1 AT-TATTATATT-TATT
91899428 ATTATTTATTATTTATT
1 ATTA-TTA-TATTTATT
91899445 ATTATGTATA
1 ATTAT-TATA
91899455 ATTTTAAAAA
Statistics
Matches: 132, Mismatches: 9, Indels: 45
0.71 0.05 0.24
Matches are distributed among these distances:
12 5 0.04
13 18 0.14
14 14 0.11
15 25 0.19
16 26 0.20
17 31 0.23
18 13 0.10
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (15 bp):
ATTATTATATTTATT
Found at i:91899800 original size:18 final size:18
Alignment explanation
Indices: 91899764--91899805 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
91899754 AACTTGTTGA
* *
91899764 TTTAT-TTTCGTATTTTT
1 TTTATATTTAGTATTGTT
91899781 TTTATATTTAGTATTGTT
1 TTTATATTTAGTATTGTT
*
91899799 TTAATAT
1 TTTATAT
91899806 GTTAATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.69
Consensus pattern (18 bp):
TTTATATTTAGTATTGTT
Found at i:91901995 original size:19 final size:20
Alignment explanation
Indices: 91901952--91901997 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
91901942 ACCAAAAAAA
91901952 TAAAATAAATTTCAAATATT
1 TAAAATAAATTTCAAATATT
* * *
91901972 CAAAATAATTTTTAAA-ATT
1 TAAAATAAATTTCAAATATT
91901991 TAAAATA
1 TAAAATA
91901998 TTTAAAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAATAAATTTCAAATATT
Found at i:91902034 original size:39 final size:38
Alignment explanation
Indices: 91901946--91902034 Score: 90
Period size: 39 Copynumber: 2.3 Consensus size: 38
91901936 AAAATTACCA
* * *
91901946 AAAAAATAAAATAAATTTCAAATATTCAAAATAATTTTT
1 AAAAAATAAAAT-AATTTAAAAAATCCAAAATAATTTTT
** *
91901985 AAAATTTAAAAT-ATTTAAAAAATCCAAAATTTATTTTCT
1 AAAAAATAAAATAATTTAAAAAATCCAAAA-TAATTTT-T
91902024 AAAAAATAAAA
1 AAAAAATAAAA
91902035 AAAATTATAT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
37 14 0.35
38 6 0.15
39 20 0.50
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.35
Consensus pattern (38 bp):
AAAAAATAAAATAATTTAAAAAATCCAAAATAATTTTT
Found at i:91902050 original size:19 final size:19
Alignment explanation
Indices: 91902026--91902070 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
91902016 TATTTTCTAA
91902026 AAAATAAAAAAAATTATAT
1 AAAATAAAAAAAATTATAT
* * * *
91902045 AAAATATATAAAATTTTCT
1 AAAATAAAAAAAATTATAT
91902064 AAAATAA
1 AAAATAA
91902071 TACTTTTGGG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATAAAAAAAATTATAT
Found at i:91902758 original size:13 final size:13
Alignment explanation
Indices: 91902715--91902759 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
91902705 AGTTCTTCAT
*
91902715 TGCTTTTGAAAAG
1 TGCTTTTGAGAAG
* *
91902728 TGCTGTGGAGAAG
1 TGCTTTTGAGAAG
91902741 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
91902754 TGCTTT
1 TGCTTT
91902760 GAAAAAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.22, C:0.09, G:0.31, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:91903910 original size:17 final size:16
Alignment explanation
Indices: 91903879--91903920 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
91903869 ACATTATCAC
*
91903879 AGAACCACTCTTATTTG
1 AGAACAACTCTTA-TTG
91903896 -GAACAACTCTATATTG
1 AGAACAACTCT-TATTG
91903912 AGAACAACT
1 AGAACAACT
91903921 GTATTGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (16 bp):
AGAACAACTCTTATTG
Found at i:91911051 original size:3 final size:3
Alignment explanation
Indices: 91911043--91911090 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
91911033 TCTTGTATCT
* * *
91911043 TTA TTA TTA TTG CTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
91911091 ATAGGTACTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:91911356 original size:24 final size:22
Alignment explanation
Indices: 91911329--91911375 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 22
91911319 TAGTGTGTTT
91911329 TATTATATGTACATATACTCTTAA
1 TATTATAT-T-CATATACTCTTAA
*
91911353 TATTATATTCTTATACTCTTAA
1 TATTATATTCATATACTCTTAA
91911375 T
1 T
91911376 GCCATATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 13 0.59
23 1 0.05
24 8 0.36
ACGTcount: A:0.34, C:0.13, G:0.02, T:0.51
Consensus pattern (22 bp):
TATTATATTCATATACTCTTAA
Found at i:91911382 original size:22 final size:22
Alignment explanation
Indices: 91911342--91911383 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
91911332 TATATGTACA
**
91911342 TATACTCTTAATATTATATTCT
1 TATACTCTTAATACCATATTCT
*
91911364 TATACTCTTAATGCCATATT
1 TATACTCTTAATACCATATT
91911384 ATTCTTATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.02, T:0.50
Consensus pattern (22 bp):
TATACTCTTAATACCATATTCT
Found at i:91913328 original size:22 final size:21
Alignment explanation
Indices: 91913292--91913332 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
91913282 CCAGTCCCAT
91913292 GCATCAGAAAATAACAACATG
1 GCATCAGAAAATAACAACATG
*
91913313 GCATGCAGTAAATAACAACA
1 GCAT-CAGAAAATAACAACA
91913333 GTCAAACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.51, C:0.20, G:0.15, T:0.15
Consensus pattern (21 bp):
GCATCAGAAAATAACAACATG
Found at i:91913381 original size:25 final size:27
Alignment explanation
Indices: 91913344--91913397 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
91913334 TCAAACATGC
91913344 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
91913370 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
91913396 AT
1 AT
91913398 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:91914919 original size:26 final size:26
Alignment explanation
Indices: 91914881--91914964 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
91914871 CATGAAATTC
* *
91914881 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
91914907 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
91914933 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
91914959 TTATCA
1 TTATCA
91914965 ATTTGTACCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:91916027 original size:39 final size:36
Alignment explanation
Indices: 91915963--91916048 Score: 93
Period size: 39 Copynumber: 2.3 Consensus size: 36
91915953 CTAAAAATAA
*
91915963 AATTTTTATAATATTTTAATAATTTTA-ATGATTTTT
1 AATTTTTAAAATATTTTAATAATTTTATAT-ATTTTT
* *
91915999 AATTTTTGAAAATAGTTTTTATATATTTTATATTTTTTT
1 AATTTTT-AAAATA-TTTTAATA-ATTTTATATATTTTT
*
91916038 AAATTTTAAAA
1 AATTTTTAAAA
91916049 ATTAATTATG
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
36 7 0.17
37 5 0.12
38 11 0.26
39 17 0.40
40 2 0.05
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.59
Consensus pattern (36 bp):
AATTTTTAAAATATTTTAATAATTTTATATATTTTT
Found at i:91918150 original size:30 final size:30
Alignment explanation
Indices: 91918105--91918161 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
91918095 ACAAATGATG
* * *
91918105 TTAAATTTTTTTTTCTTTATTAATAATTAT
1 TTAAAATTTTATTTCTTTATCAATAATTAT
91918135 TTAAAATTTTATTTCTTTATCAATAAT
1 TTAAAATTTTATTTCTTTATCAATAAT
91918162 GACTAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.61
Consensus pattern (30 bp):
TTAAAATTTTATTTCTTTATCAATAATTAT
Found at i:91928941 original size:19 final size:17
Alignment explanation
Indices: 91928907--91928941 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
91928897 CAAAAATATT
91928907 AACAAAATTAACAATAA
1 AACAAAATTAACAATAA
91928924 AACAAGAATTATACAATA
1 AACAA-AATTA-ACAATA
91928942 TTCAAACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (17 bp):
AACAAAATTAACAATAA
Found at i:91935134 original size:7 final size:7
Alignment explanation
Indices: 91935117--91935146 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
91935107 TTTAATATAT
91935117 TTTTAAAA
1 TTTT-AAA
91935125 TTTTAAA
1 TTTTAAA
91935132 TTTTAAA
1 TTTTAAA
91935139 TTTTAAA
1 TTTTAAA
91935146 T
1 T
91935147 AATTAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.82
8 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTTAAA
Found at i:91938659 original size:33 final size:33
Alignment explanation
Indices: 91938612--91938676 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
91938602 TGACTAACCA
91938612 AAACCGAGCTCAATGTACTCATCATCAAATGCT
1 AAACCGAGCTCAATGTACTCATCATCAAATGCT
*
91938645 AAACTGAGCTCAATGTACTCATCATCAAATGC
1 AAACCGAGCTCAATGTACTCATCATCAAATGC
91938677 CAAAAAAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.25
Consensus pattern (33 bp):
AAACCGAGCTCAATGTACTCATCATCAAATGCT
Found at i:91941529 original size:35 final size:35
Alignment explanation
Indices: 91941473--91941543 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 35
91941463 AAACATCCAC
91941473 AGTACTCACATTATTAATTTAGTTTATTAA-TTATT
1 AGTACTCACATTATTAATTTAGTTT-TTAATTTATT
*
91941508 AGTA-TCATCATTATTATTTTAGTTTTTAATTTATT
1 AGTACTCA-CATTATTAATTTAGTTTTTAATTTATT
91941543 A
1 A
91941544 CCAGGAGGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
34 7 0.21
35 26 0.79
ACGTcount: A:0.32, C:0.07, G:0.06, T:0.55
Consensus pattern (35 bp):
AGTACTCACATTATTAATTTAGTTTTTAATTTATT
Found at i:91943351 original size:7 final size:7
Alignment explanation
Indices: 91943339--91943372 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
91943329 AGGAGAAATT
91943339 GATGAAG
1 GATGAAG
91943346 GATGAAG
1 GATGAAG
91943353 GATGAAG
1 GATGAAG
91943360 GATGAAG
1 GATGAAG
91943367 GATGAA
1 GATGAA
91943373 ACAGATTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.41, T:0.15
Consensus pattern (7 bp):
GATGAAG
Found at i:91946470 original size:17 final size:18
Alignment explanation
Indices: 91946448--91946481 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91946438 CCATTAAATG
*
91946448 AGTTAT-TAGGTTGGTTA
1 AGTTATATAAGTTGGTTA
91946465 AGTTATATAAGTTGGTT
1 AGTTATATAAGTTGGTT
91946482 TAAAAGACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (18 bp):
AGTTATATAAGTTGGTTA
Found at i:91947308 original size:3 final size:3
Alignment explanation
Indices: 91947302--91947350 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
91947292 TCCCTGGTGG
91947302 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
91947350 T
1 T
91947351 AATGCAGGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:91951360 original size:37 final size:37
Alignment explanation
Indices: 91951318--91951394 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
91951308 ATCAACCAGA
* *
91951318 ATTCTTCCATCAAAAATCTGTCAAGTCTGCTCCTTTT
1 ATTCTTCCAACAAAAATCTATCAAGTCTGCTCCTTTT
*
91951355 ATTCTTCTAACAAAAATCTATCAAGTCTGCTCCTTTT
1 ATTCTTCCAACAAAAATCTATCAAGTCTGCTCCTTTT
91951392 ATT
1 ATT
91951395 ATCCGAGCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.25, G:0.06, T:0.42
Consensus pattern (37 bp):
ATTCTTCCAACAAAAATCTATCAAGTCTGCTCCTTTT
Found at i:91963296 original size:18 final size:18
Alignment explanation
Indices: 91963273--91963308 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
91963263 ATGTGATTAA
91963273 GTATTGTTTGGATGTGCT
1 GTATTGTTTGGATGTGCT
91963291 GTATTGTTTGGATGTGCT
1 GTATTGTTTGGATGTGCT
91963309 AAATAGCCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.06, G:0.33, T:0.50
Consensus pattern (18 bp):
GTATTGTTTGGATGTGCT
Done.