Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 287 of 325
Found at i:91972367 original size:424 final size:425
Alignment explanation
Indices: 91971529--91972380 Score: 1625
Period size: 424 Copynumber: 2.0 Consensus size: 425
91971519 TTTTACGACA
*
91971529 GTTTGAATCCCTCAACTAGGCAATTGATCTATACAACCGCTAGTGGGACTCTGAATAATAAAATA
1 GTTTGAATCCCTCAACTAGGCAATTGATCTATACAACCGCTAGTGGGAC-CTGAATAATAAAACA
* *
91971594 CTTGAAGAGGCTTATGAGTTTATAGAGGAGATGTCACTGAATAATTATCAGTGGCAAGTCATGAG
65 CCTGAAGAGGCTTATGAGTTTATAGAGGAGATATCACTGAATAATTATCAGTGGCAAGTCATGAG
91971659 AACGAAGCCCACAAAAGTAGCTAGTGTTTTTAACTTAGATGCGGTCACCATGTTGTCGAATTTGG
130 AACGAAGCCCACAAAAGTAGCTAGTGTTTTTAACTTAGATGCGGTCACCATGTTGTCGAATTTGG
91971724 TAGAACTCTTAAATAAAAAAATTGATGGTTTATGTGTTTCTACACAGGTACATCCAGTGATGCAA
195 TAGAACTCTTAAATAAAAAAATTGATGGTTTATGTGTTTCTACACAGGTACATCCAGTGATGCAA
*
91971789 TGCGACGCAAATAGAGGTGGAATTAATAATTTAGAATATTTACCCTATAGTCCTAGCATGGAGAA
260 TGCGACGCAAATAGAGGTGGAATTAATAATTCAGAATATTTACCCTATAGTCCTAGCATGGAGAA
*
91971854 TGAGTAACTAAATTATATGGGTAATAATTCTAGACCTCAAAATAATCCTTATAGTAATAACTATA
325 TGAGCAACTAAATTATATGGGTAATAATTCTAGACCTCAAAATAATCCTTATAGTAATAACTATA
91971919 ATGCAGGATGGATAAACCACCTAAATTTCTCATAGG
390 ATGCAGGATGGATAAACCACCTAAATTTCTCATAGG
91971955 GTTTGAATCCCTCAACTAGGCAATTGATCTATACAACCGCTAGTGGGA-CTGAATAATAAAACAC
1 GTTTGAATCCCTCAACTAGGCAATTGATCTATACAACCGCTAGTGGGACCTGAATAATAAAACAC
*
91972019 CTGAAGAGGCTTATGAGTTTATAGAGGAGATATCACTGAATAATTATCAGTGGCAAGTCATGAGG
66 CTGAAGAGGCTTATGAGTTTATAGAGGAGATATCACTGAATAATTATCAGTGGCAAGTCATGAGA
91972084 ACGAAGCCCACAAAAGTAGCTAGTGTTTTTAACTTAGATGCGGTCACCATGTTGTCGAATTTGGT
131 ACGAAGCCCACAAAAGTAGCTAGTGTTTTTAACTTAGATGCGGTCACCATGTTGTCGAATTTGGT
91972149 AGAACTCTTAAATAAAAAAATTGATGGTTTATGTGTTTCTACACAGGTACATCCAGTGATGCAAT
196 AGAACTCTTAAATAAAAAAATTGATGGTTTATGTGTTTCTACACAGGTACATCCAGTGATGCAAT
91972214 GCGACGCAAATAGAGGTGGAATTAATAATTCAGAATATTTACCCTATAGTCCTAGCATGGAGAAT
261 GCGACGCAAATAGAGGTGGAATTAATAATTCAGAATATTTACCCTATAGTCCTAGCATGGAGAAT
91972279 GAGCAACTAAATTATATGGGTAATAATTCTAGACCTCAAAATAATCCTTATAGTAATAACTATAA
326 GAGCAACTAAATTATATGGGTAATAATTCTAGACCTCAAAATAATCCTTATAGTAATAACTATAA
*
91972344 TGCAGGATGGATGAACCACCTAAATTTCTCATAGG
391 TGCAGGATGGATAAACCACCTAAATTTCTCATAGG
91972379 GT
1 GT
91972381 GGTCAAGGAA
Statistics
Matches: 419, Mismatches: 7, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
424 371 0.89
426 48 0.11
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.29
Consensus pattern (425 bp):
GTTTGAATCCCTCAACTAGGCAATTGATCTATACAACCGCTAGTGGGACCTGAATAATAAAACAC
CTGAAGAGGCTTATGAGTTTATAGAGGAGATATCACTGAATAATTATCAGTGGCAAGTCATGAGA
ACGAAGCCCACAAAAGTAGCTAGTGTTTTTAACTTAGATGCGGTCACCATGTTGTCGAATTTGGT
AGAACTCTTAAATAAAAAAATTGATGGTTTATGTGTTTCTACACAGGTACATCCAGTGATGCAAT
GCGACGCAAATAGAGGTGGAATTAATAATTCAGAATATTTACCCTATAGTCCTAGCATGGAGAAT
GAGCAACTAAATTATATGGGTAATAATTCTAGACCTCAAAATAATCCTTATAGTAATAACTATAA
TGCAGGATGGATAAACCACCTAAATTTCTCATAGG
Found at i:91977906 original size:26 final size:26
Alignment explanation
Indices: 91977876--91977926 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
91977866 ACCAATGAAC
*
91977876 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
91977902 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
91977927 CTTTTCACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:91978005 original size:104 final size:105
Alignment explanation
Indices: 91977634--91977993 Score: 627
Period size: 104 Copynumber: 3.4 Consensus size: 105
91977624 TAACCGTTAT
* * ** *
91977634 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
91977699 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
91977738 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
91977802 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
91977843 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
91977907 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
91977947 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCAC
1 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCAC
91977994 ACAACAACCC
Statistics
Matches: 247, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
104 171 0.69
105 75 0.30
106 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:91978366 original size:29 final size:29
Alignment explanation
Indices: 91978333--91978396 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
91978323 TAATCCACCA
91978333 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
91978362 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
91978392 CCCAA
1 CCCAA
91978397 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:91978370 original size:30 final size:30
Alignment explanation
Indices: 91978340--91978396 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
91978330 CCACCCAACT
91978340 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
91978369 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
91978397 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:91980478 original size:16 final size:15
Alignment explanation
Indices: 91980457--91980493 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
91980447 TTCTATTTTC
91980457 TTTATTTAATTCATTA
1 TTTATTTAATTC-TTA
91980473 TTTATTTAATTCTTA
1 TTTATTTAATTCTTA
*
91980488 TCTATT
1 TTTATT
91980494 ATTATTATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTATTTAATTCTTA
Found at i:91980660 original size:5 final size:5
Alignment explanation
Indices: 91980650--91980677 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
91980640 TTCTTACTAG
91980650 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
91980678 TCATTCCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:91982179 original size:34 final size:34
Alignment explanation
Indices: 91982140--91982209 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
91982130 ATTGAGTCTA
* *
91982140 TTTA-TTTTATTTTTATTTTATGGTCATTTTTATT
1 TTTATTTTTAGTTTT-TTTTATGGTCATTGTTATT
* *
91982174 TTTATTTTTAGTTTTTTTTATGTTTATTGTTATT
1 TTTATTTTTAGTTTTTTTTATGGTCATTGTTATT
91982208 TT
1 TT
91982210 CTTAAACTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 22 0.71
35 9 0.29
ACGTcount: A:0.16, C:0.01, G:0.07, T:0.76
Consensus pattern (34 bp):
TTTATTTTTAGTTTTTTTTATGGTCATTGTTATT
Found at i:91982188 original size:7 final size:6
Alignment explanation
Indices: 91982140--91982209 Score: 58
Period size: 6 Copynumber: 12.3 Consensus size: 6
91982130 ATTGAGTCTA
* * * *
91982140 TTTA-T TTTATT TTTA-T TTTATG GTCATT TTTATT TTTATT TTTA-G
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
91982185 TTT-TT TTTATG TTTATT GTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
91982210 CTTAAACTTC
Statistics
Matches: 49, Mismatches: 12, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
5 15 0.31
6 34 0.69
ACGTcount: A:0.16, C:0.01, G:0.07, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:91982191 original size:22 final size:22
Alignment explanation
Indices: 91982144--91982209 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
91982134 AGTCTATTTA
* **
91982144 TTTTATTTTTATTTTATGGTCAT
1 TTTTATTTTTATTTT-TAGTTTT
91982167 TTTTATTTTTATTTTTAGTTTT
1 TTTTATTTTTATTTTTAGTTTT
* *
91982189 TTTTATGTTTATTGTTA-TTTT
1 TTTTATTTTTATTTTTAGTTTT
91982210 CTTAAACTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
21 4 0.11
22 19 0.50
23 15 0.39
ACGTcount: A:0.15, C:0.02, G:0.08, T:0.76
Consensus pattern (22 bp):
TTTTATTTTTATTTTTAGTTTT
Found at i:91997193 original size:32 final size:32
Alignment explanation
Indices: 91997130--91997198 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
91997120 ATAATTCATA
*
91997130 TTTAAAGTTATTTTTCTATGTATATATTTTCT
1 TTTAAAGTTATTTTTCTATATATATATTTTCT
*
91997162 TTTAAAGTTATTTATGTGTATAT-TATA-TTTCT
1 TTTAAAGTTATTT-T-TCTATATATATATTTTCT
91997194 TTTAA
1 TTTAA
91997199 GAACCATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 23 0.70
33 5 0.15
34 5 0.15
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.61
Consensus pattern (32 bp):
TTTAAAGTTATTTTTCTATATATATATTTTCT
Found at i:91998674 original size:3 final size:3
Alignment explanation
Indices: 91998666--91998715 Score: 91
Period size: 3 Copynumber: 16.3 Consensus size: 3
91998656 CATCTTACTT
91998666 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-AA
91998712 GAA G
1 GAA G
91998716 GGTTTGTTGT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:91999424 original size:3 final size:3
Alignment explanation
Indices: 91999416--91999445 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
91999406 TTTTATAGTC
91999416 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
91999446 CTGTTATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:91999540 original size:21 final size:21
Alignment explanation
Indices: 91999516--91999556 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
91999506 ACCAACGTGG
91999516 CTAGTTAATTGGCCACGTCAT
1 CTAGTTAATTGGCCACGTCAT
91999537 CTAGTTAATTGGCCACGTCA
1 CTAGTTAATTGGCCACGTCA
91999557 CCTTTCCCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (21 bp):
CTAGTTAATTGGCCACGTCAT
Found at i:92008768 original size:61 final size:62
Alignment explanation
Indices: 92008668--92008790 Score: 203
Period size: 61 Copynumber: 2.0 Consensus size: 62
92008658 GGAAAACAAC
*
92008668 ATAGATAAATACCTAAAACAGTTGCAACCCTATAAATTTGTCCAAG-AAAAAGTGTTTGATT
1 ATAGATAAATACCTAAAACAGTTGCAACCCTATAAATTTGTCCAAGAAAAAAATGTTTGATT
* * *
92008729 ATAGATAAATACCTACAACAGTTGCAACCTTATACATTTGTCCAAGAAAAAAATGTTTGATT
1 ATAGATAAATACCTAAAACAGTTGCAACCCTATAAATTTGTCCAAGAAAAAAATGTTTGATT
92008791 CTTTGATGAG
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
61 43 0.75
62 14 0.25
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (62 bp):
ATAGATAAATACCTAAAACAGTTGCAACCCTATAAATTTGTCCAAGAAAAAAATGTTTGATT
Found at i:92016609 original size:25 final size:25
Alignment explanation
Indices: 92016547--92016662 Score: 110
Period size: 25 Copynumber: 4.6 Consensus size: 25
92016537 GAATTCTCTA
* * *
92016547 GAAAGCCTTTGTAGCGTATCATTTA
1 GAAAGCCTTTGTGGCATATCATTTG
** *
92016572 GAAAGTTTTTGTGGCATATAATTTG
1 GAAAGCCTTTGTGGCATATCATTTG
*
92016597 GAAAGCCTTTGTGGCGA-ATTC-TGTG
1 GAAAGCCTTTGTGGC-ATA-TCATTTG
* *
92016622 AAAAGCCTTTGTGGCGTATCATTTG
1 GAAAGCCTTTGTGGCATATCATTTG
*
92016647 GAAATCCTTTGTGGCA
1 GAAAGCCTTTGTGGCA
92016663 AATTCTCTAG
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
24 2 0.03
25 67 0.94
26 2 0.03
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (25 bp):
GAAAGCCTTTGTGGCATATCATTTG
Found at i:92016677 original size:50 final size:49
Alignment explanation
Indices: 92016570--92016685 Score: 135
Period size: 50 Copynumber: 2.3 Consensus size: 49
92016560 GCGTATCATT
* * *
92016570 TAGAAAGTTTTTGTGGCATATAATTTGGAAAGCCTTTGTGGCGAATTCTG
1 TAGAAAG-CTTTGTGGCATATAATTTGGAAAGCCTTTGTGGCAAATTCTC
* * *
92016620 T-GAAAAGCCTTTGTGGCGTATCATTTGGAAATCCTTTGTGGCAAATTCTC
1 TAG-AAAG-CTTTGTGGCATATAATTTGGAAAGCCTTTGTGGCAAATTCTC
92016670 TAGAAAGCTGTTGTGG
1 TAGAAAGCT-TTGTGG
92016686 TGAGTTGTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
49 3 0.05
50 52 0.93
51 1 0.02
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (49 bp):
TAGAAAGCTTTGTGGCATATAATTTGGAAAGCCTTTGTGGCAAATTCTC
Found at i:92017336 original size:48 final size:48
Alignment explanation
Indices: 92017272--92017369 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
92017262 TATGTAGGTC
*
92017272 TGATAATTGAACCAGTGCGTCGGAAGGGACCAAGCTAGTGATATGTCA
1 TGATAATTGAACCAGTGCGTCGGAAGGGACCAAGCTAGTGATATGCCA
*
92017320 TGATAATTGAACCAGTGTGTCGGAAGGGACCAAGCTAGTGATATGCCA
1 TGATAATTGAACCAGTGCGTCGGAAGGGACCAAGCTAGTGATATGCCA
92017368 TG
1 TG
92017370 GTGGTAGACC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (48 bp):
TGATAATTGAACCAGTGCGTCGGAAGGGACCAAGCTAGTGATATGCCA
Found at i:92017746 original size:11 final size:11
Alignment explanation
Indices: 92017732--92017771 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
92017722 GTTTTCTCCA
*
92017732 TATTTTGCTAC
1 TATTTTGCTAT
*
92017743 TATTTTACTAT
1 TATTTTGCTAT
*
92017754 TATGTTGCTAT
1 TATTTTGCTAT
92017765 TATTTTG
1 TATTTTG
92017772 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:92018673 original size:81 final size:81
Alignment explanation
Indices: 92018582--92018743 Score: 243
Period size: 81 Copynumber: 2.0 Consensus size: 81
92018572 ACCTTCTTTT
* * * *
92018582 TAAATATATATAATTAACTTATTTGTTTTAGTTGGTCTGTTGTAACCTTTTATGTTTGCAAAATT
1 TAAATATATATAATTAACTTATTTATTTTAGTTGGACAGTTGTAACCTTTTATATTTGCAAAATT
* * *
92018647 TTCTCTCATGTATTTG
66 CTATCTCATGGATTTG
* *
92018663 TAAATATATATAATTAGCTTATTTATTTTAGTTGGACAGTTGTAACCTTTTATATTTGTAAAATT
1 TAAATATATATAATTAACTTATTTATTTTAGTTGGACAGTTGTAACCTTTTATATTTGCAAAATT
92018728 CTATCTCATGGATTTG
66 CTATCTCATGGATTTG
92018744 AGGTGTTTGT
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.50
Consensus pattern (81 bp):
TAAATATATATAATTAACTTATTTATTTTAGTTGGACAGTTGTAACCTTTTATATTTGCAAAATT
CTATCTCATGGATTTG
Found at i:92023900 original size:24 final size:25
Alignment explanation
Indices: 92023844--92023908 Score: 82
Period size: 24 Copynumber: 2.7 Consensus size: 25
92023834 AAAACGAAAC
92023844 AAAAT-AATATATATAAAAACAATTT
1 AAAATAAATA-ATATAAAAACAATTT
* *
92023869 AAAGTAAATAATATGAAAA-AATTT
1 AAAATAAATAATATAAAAACAATTT
92023893 AAAATAAATAA-ATAAA
1 AAAATAAATAATATAAA
92023909 TTGCAAAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
23 4 0.11
24 15 0.43
25 12 0.34
26 4 0.11
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.28
Consensus pattern (25 bp):
AAAATAAATAATATAAAAACAATTT
Found at i:92025771 original size:41 final size:41
Alignment explanation
Indices: 92025715--92025838 Score: 128
Period size: 41 Copynumber: 3.0 Consensus size: 41
92025705 AAACGCCATA
* * * * *
92025715 AAAAATTGAGAAATAGTGGTGTTTTTTG-TCTAAACGCCGCT
1 AAAAACTGAGCAATAGTGGCGTTTCTGGTTC-AAACGCCGCT
*
92025756 AAAAACTGAGCAATAGCGGCGTTTCTGGTTCAAACGCCGCT
1 AAAAACTGAGCAATAGTGGCGTTTCTGGTTCAAACGCCGCT
* **
92025797 AAAAACTGAACAATAGTGGCGCTTT-TGG-AGAAACGCCGCT
1 AAAAACTGAGCAATAGTGGCG-TTTCTGGTTCAAACGCCGCT
92025837 AA
1 AA
92025839 CGCCAATATA
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
40 12 0.17
41 54 0.76
42 5 0.07
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (41 bp):
AAAAACTGAGCAATAGTGGCGTTTCTGGTTCAAACGCCGCT
Found at i:92025935 original size:41 final size:41
Alignment explanation
Indices: 92025874--92025979 Score: 131
Period size: 41 Copynumber: 2.6 Consensus size: 41
92025864 GGCGCTTTTG
* * *
92025874 GATCGAGCTTTTAGCTGCGCTTTTGGAGAAGCGCCGCTATA
1 GATCGAGCTTTTAGCAGCGCTTTTAGAGAAACGCCGCTATA
* * * *
92025915 GATCGAGCTGTTAGCGGCGCTTTTAGAGAAATGCTGCTATA
1 GATCGAGCTTTTAGCAGCGCTTTTAGAGAAACGCCGCTATA
* *
92025956 GATTGAGCTTTTAGCAGTGCTTTT
1 GATCGAGCTTTTAGCAGCGCTTTT
92025980 TAAAAAACGC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (41 bp):
GATCGAGCTTTTAGCAGCGCTTTTAGAGAAACGCCGCTATA
Found at i:92026577 original size:14 final size:14
Alignment explanation
Indices: 92026539--92026578 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
92026529 TGTTTATTAT
*
92026539 TTTAGGGTTTAAGA
1 TTTAAGGTTTAAGA
* *
92026553 TTTATGATTTAAGA
1 TTTAAGGTTTAAGA
92026567 TTTAAGGTTTAA
1 TTTAAGGTTTAA
92026579 TGTAGGGGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (14 bp):
TTTAAGGTTTAAGA
Found at i:92027097 original size:18 final size:17
Alignment explanation
Indices: 92027065--92027098 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
92027055 TATTAATTTT
92027065 AATATATTAAAATTATC
1 AATATATTAAAATTATC
*
92027082 AATATAATTTAAATTAT
1 AATAT-ATTAAAATTAT
92027099 TTAAGAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
AATATATTAAAATTATC
Found at i:92032501 original size:31 final size:32
Alignment explanation
Indices: 92032463--92032527 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
92032453 TTGCTGTATT
92032463 TTATTTATATTTA-TATTT-AATCTA-ATTTTTA
1 TTATTTAT-TTTAGT-TTTGAATCTATATTTTTA
*
92032494 TTATTTATTTTAGTTTTGATTCTATATTTTTA
1 TTATTTATTTTAGTTTTGAATCTATATTTTTA
92032526 TT
1 TT
92032528 TTAATTTGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 7 0.23
31 14 0.47
32 9 0.30
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (32 bp):
TTATTTATTTTAGTTTTGAATCTATATTTTTA
Found at i:92038236 original size:24 final size:25
Alignment explanation
Indices: 92038209--92038262 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
92038199 TTATACTTAT
**
92038209 ATTTTTAAATTTTTTTA-AATTTTA
1 ATTTTTAAATACTTTTATAATTTTA
* *
92038233 ATTTTTATATACTTTTATTATTTTA
1 ATTTTTAAATACTTTTATAATTTTA
92038258 ATTTT
1 ATTTT
92038263 AATTTTAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (25 bp):
ATTTTTAAATACTTTTATAATTTTA
Found at i:92038296 original size:22 final size:22
Alignment explanation
Indices: 92038271--92038318 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
92038261 TTAATTTTAA
92038271 TTTTGCCATTTC-TATTTTTTTC
1 TTTTGCC-TTTCGTATTTTTTTC
**
92038293 TTTTTTCTTTCGTATTTTTTTC
1 TTTTGCCTTTCGTATTTTTTTC
92038315 TTTT
1 TTTT
92038319 TACTATTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.06, C:0.15, G:0.04, T:0.75
Consensus pattern (22 bp):
TTTTGCCTTTCGTATTTTTTTC
Found at i:92038303 original size:21 final size:22
Alignment explanation
Indices: 92038279--92038319 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
92038269 AATTTTGCCA
92038279 TTTC-TATTTTTTTCTTTTTTC
1 TTTCGTATTTTTTTCTTTTTTC
92038300 TTTCGTATTTTTTTCTTTTT
1 TTTCGTATTTTTTTCTTTTT
92038320 ACTATTATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.05, C:0.12, G:0.02, T:0.80
Consensus pattern (22 bp):
TTTCGTATTTTTTTCTTTTTTC
Found at i:92038363 original size:9 final size:10
Alignment explanation
Indices: 92038349--92038396 Score: 50
Period size: 9 Copynumber: 5.2 Consensus size: 10
92038339 CCTTTTAAGT
92038349 TTATTGA-TA
1 TTATTGATTA
*
92038358 TTATTGAGT-
1 TTATTGATTA
92038367 TTATT-ATTA
1 TTATTGATTA
*
92038376 TTATTTATTA
1 TTATTGATTA
92038386 TTATT-ATTA
1 TTATTGATTA
92038395 TT
1 TT
92038397 TTATCTTTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
8 2 0.06
9 23 0.66
10 10 0.29
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (10 bp):
TTATTGATTA
Found at i:92038369 original size:18 final size:18
Alignment explanation
Indices: 92038346--92038396 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
92038336 TTACCTTTTA
92038346 AGTTTATTGA-TATTATTG
1 AGTTTATT-ATTATTATTG
*
92038364 AGTTTATTATTATTATTT
1 AGTTTATTATTATTATTG
92038382 A--TTATTATTATTATT
1 AGTTTATTATTATTATT
92038397 TTATCTTTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 14 0.45
17 1 0.03
18 16 0.52
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (18 bp):
AGTTTATTATTATTATTG
Found at i:92038373 original size:3 final size:3
Alignment explanation
Indices: 92038367--92038400 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
92038357 ATTATTGAGT
92038367 TTA TTA TTA TTA TTTA TTA TTA TTA TTA TT- TTA T
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA T
92038401 CTTTCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 24 0.83
4 3 0.10
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:92038384 original size:13 final size:13
Alignment explanation
Indices: 92038356--92038393 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
92038346 AGTTTATTGA
92038356 TATTATTGAGTTTAT
1 TATTATT-A-TTTAT
92038371 TATTATTATTTAT
1 TATTATTATTTAT
92038384 TATTATTATT
1 TATTATTATT
92038394 ATTTTATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 15 0.65
14 1 0.04
15 7 0.30
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (13 bp):
TATTATTATTTAT
Found at i:92038388 original size:16 final size:16
Alignment explanation
Indices: 92038367--92038397 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
92038357 ATTATTGAGT
92038367 TTATTATTATTATTTA
1 TTATTATTATTATTTA
92038383 TTATTATTATTATTT
1 TTATTATTATTATTT
92038398 TATCTTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATTATTATTATTTA
Found at i:92039433 original size:13 final size:12
Alignment explanation
Indices: 92039412--92039444 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
92039402 TGTTCTCCAA
92039412 AAAAAAAAAGTG
1 AAAAAAAAAGTG
92039424 AAATAAAAAAGTG
1 AAA-AAAAAAGTG
92039437 AAAAAAAA
1 AAAAAAAA
92039445 TACATTTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (12 bp):
AAAAAAAAAGTG
Found at i:92040285 original size:30 final size:30
Alignment explanation
Indices: 92040244--92040304 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
92040234 GAGTTTTCAG
92040244 GATCCACACGGGCAGGCCAAACACCCATGT
1 GATCCACACGGGCAGGCCAAACACCCATGT
* * * *
92040274 GATCTACACGGGTAGGCCACACGCCCATGT
1 GATCCACACGGGCAGGCCAAACACCCATGT
92040304 G
1 G
92040305 TCAGCCCGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.34, G:0.26, T:0.13
Consensus pattern (30 bp):
GATCCACACGGGCAGGCCAAACACCCATGT
Found at i:92049554 original size:19 final size:20
Alignment explanation
Indices: 92049526--92049564 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
92049516 AAAAAAATAG
*
92049526 TTATAATTTTTA-ATTATTT
1 TTATAATTTTAATATTATTT
*
92049545 TTATATTTTTAATATTATTT
1 TTATAATTTTAATATTATTT
92049565 AAAACTTCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
TTATAATTTTAATATTATTT
Found at i:92051668 original size:29 final size:29
Alignment explanation
Indices: 92051636--92051693 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
92051626 ATTTTTATTA
*
92051636 TTTAATATA-AATTTAATTCTCATAAATAC
1 TTTAATA-AGAATTTAATACTCATAAATAC
* *
92051665 TTTAATAAGGATTTAATACTCATAGATAC
1 TTTAATAAGAATTTAATACTCATAAATAC
92051694 CAAATTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.41
Consensus pattern (29 bp):
TTTAATAAGAATTTAATACTCATAAATAC
Found at i:92057108 original size:27 final size:26
Alignment explanation
Indices: 92057053--92057108 Score: 60
Period size: 27 Copynumber: 2.1 Consensus size: 26
92057043 TTATTTTTCA
* *
92057053 TTTTCCTTTTCTTCTTCCCTTTTTAT
1 TTTTCCTTTTCTCCTTCCCTCTTTAT
*
92057079 TTTTCTCTTTTCTCCTTTCCC-CTTTGT
1 TTTTC-CTTTTCTCC-TTCCCTCTTTAT
92057106 TTT
1 TTT
92057109 CCTCCCATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 5 0.20
27 15 0.60
28 5 0.20
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.68
Consensus pattern (26 bp):
TTTTCCTTTTCTCCTTCCCTCTTTAT
Found at i:92057246 original size:27 final size:26
Alignment explanation
Indices: 92057191--92057246 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
92057181 TTATTTTTCA
* *
92057191 TTTTCCTTTTCTTCTTCCCTTTTTAT
1 TTTTCCTTTTCTCCTTCCCTCTTTAT
* *
92057217 TTTTCTCTTTTCTCCTTTCCTCTTTGT
1 TTTTC-CTTTTCTCCTTCCCTCTTTAT
92057244 TTT
1 TTT
92057247 CCTCCCATCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.70
Consensus pattern (26 bp):
TTTTCCTTTTCTCCTTCCCTCTTTAT
Found at i:92057368 original size:138 final size:138
Alignment explanation
Indices: 92056947--92057368 Score: 738
Period size: 138 Copynumber: 3.1 Consensus size: 138
92056937 TTTACTATTT
* * * **
92056947 TCTTCTCCTTCCCTCTCTATTTTCCTCCCATCTTTATTTTTTTTAAACATAGTTTTTCTATGTTT
1 TCTTCTCCTTTCCTCTTTGTTTTCCTCCCATCTTTA-TTTTTTTAAATGTAGTTTTTCTATGTTT
92057012 TCCATTTGTTAAAACCAGTCCCTATACTTTTTTATTTTTCATTTTCCTTTTCTTCTTCCCTTTTT
65 TCCATTTGTTAAAACCAGTCCCTATACTTTTTTATTTTTCATTTTCCTTTTCTTCTTCCCTTTTT
92057077 ATTTTTCTC
130 ATTTTTCTC
* * *
92057086 TTTTCTCCTTTCCCCTTTGTTTTCCTCCCATTTTTATTTTTTTAAATGTAGTTTTTCTATGTTTT
1 TCTTCTCCTTTCCTCTTTGTTTTCCTCCCATCTTTATTTTTTTAAATGTAGTTTTTCTATGTTTT
92057151 CCATTTGTTAAAACCAGTCCCTATACTTTTTTATTTTTCATTTTCCTTTTCTTCTTCCCTTTTTA
66 CCATTTGTTAAAACCAGTCCCTATACTTTTTTATTTTTCATTTTCCTTTTCTTCTTCCCTTTTTA
92057216 TTTTTCTC
131 TTTTTCTC
*
92057224 TTTTCTCCTTTCCTCTTTGTTTTCCTCCCATCTTTATTTTTTTAAATGTAGTTTTTCTATGTTTT
1 TCTTCTCCTTTCCTCTTTGTTTTCCTCCCATCTTTATTTTTTTAAATGTAGTTTTTCTATGTTTT
92057289 CCATTTGTTAAAACCAGTCCCTATACTTTTTTTATTTTTCATTTTCCTTTTCTTCTTCCCTTTTT
66 CCATTTGTTAAAACCAGTCCCTATAC-TTTTTTATTTTTCATTTTCCTTTTCTTCTTCCCTTTTT
92057354 A-TTTTCTC
130 ATTTTTCTC
92057362 TCTTCTC
1 TCTTCTC
92057369 ATATTATTTA
Statistics
Matches: 271, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
138 202 0.75
139 69 0.25
ACGTcount: A:0.13, C:0.24, G:0.04, T:0.59
Consensus pattern (138 bp):
TCTTCTCCTTTCCTCTTTGTTTTCCTCCCATCTTTATTTTTTTAAATGTAGTTTTTCTATGTTTT
CCATTTGTTAAAACCAGTCCCTATACTTTTTTATTTTTCATTTTCCTTTTCTTCTTCCCTTTTTA
TTTTTCTC
Found at i:92071938 original size:22 final size:21
Alignment explanation
Indices: 92071912--92071967 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
92071902 GTTATTTTCC
92071912 ATATTATATATTAAATTAACAT
1 ATATTAT-TATTAAATTAACAT
** *
92071934 ATATTATTATTACTTTAACTT
1 ATATTATTATTAAATTAACAT
92071955 ATTATTATTATTA
1 A-TATTATTATTA
92071968 TTTTGTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (21 bp):
ATATTATTATTAAATTAACAT
Found at i:92071943 original size:3 final size:3
Alignment explanation
Indices: 92071935--92072102 Score: 55
Period size: 3 Copynumber: 54.7 Consensus size: 3
92071925 AATTAACATA
* * *
92071935 TAT TAT TAT TACT T-T AACT TAT TAT TAT TAT TAT T-T TGT TAA TAT
1 TAT TAT TAT TA-T TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
92071980 TAC TAT TAT AAT TA- TAT T-T TAT TTT TGT GTATT TATT TGT TCAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TA-T TA-T TAT T-AT TAT
* * *
92072026 TAT TAT TAAT TCAT TAAT T-T T-T TAT TAT TAA CA- TAT TCT TAT TAT
1 TAT TAT T-AT T-AT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
92072071 TTT TAT TAAT GTAT TAG TAT TAT TAT ATAT TA
1 TAT TAT T-AT -TAT TAT TAT TAT TAT -TAT TA
92072103 GTGTATATTT
Statistics
Matches: 124, Mismatches: 25, Indels: 32
0.69 0.14 0.18
Matches are distributed among these distances:
2 14 0.11
3 80 0.65
4 28 0.23
5 2 0.02
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:92071976 original size:25 final size:23
Alignment explanation
Indices: 92071935--92071993 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
92071925 AATTAACATA
*
92071935 TATTATTATTACTTTAACTTATTAT
1 TATTATTATTACTTTAA--TATTAC
*
92071960 TATTATTATT-TTGTTAATATTAC
1 TATTATTATTACT-TTAATATTAC
*
92071983 TATTATAATTA
1 TATTATTATTA
92071994 TATTTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 14 0.48
24 1 0.03
25 14 0.48
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTATTATTACTTTAATATTAC
Found at i:92072111 original size:20 final size:19
Alignment explanation
Indices: 92072088--92072154 Score: 50
Period size: 20 Copynumber: 3.5 Consensus size: 19
92072078 AATGTATTAG
92072088 TATTATTATATATTAGTGTA
1 TATTATTATATATTA-TGTA
*
92072108 TATT-TTTTATTATATATGTA
1 TATTATTATA-TAT-TATGTA
*
92072128 TATGTA-TATATATT-TATA
1 TAT-TATTATATATTATGTA
*
92072146 TAGTATTAT
1 TATTATTAT
92072155 TTTTAATTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
17 2 0.05
18 8 0.21
19 5 0.13
20 17 0.45
21 6 0.16
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.58
Consensus pattern (19 bp):
TATTATTATATATTATGTA
Found at i:92072236 original size:138 final size:140
Alignment explanation
Indices: 92072082--92072375 Score: 511
Period size: 138 Copynumber: 2.1 Consensus size: 140
92072072 TTTATTAATG
*
92072082 TATTAGTATTATTATATATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATA-
1 TATTATTATTATTATATATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATAT
* *
92072146 TAGTATTATTTTTAATTACTTTATTTTAATA-TTTTCTTATATTATATATGCTTTTTGTATTTCA
66 TAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATATACTTTTTGTATTTCA
92072210 ATACTATTAC
131 ATACTATTAC
92072220 TATTATTATTATTATATATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATAT
1 TATTATTATTATTATATATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATA-
*
92072285 TTAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTACTTTTTGTATTTC
65 TTAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATATACTTTTTGTATTTC
* *
92072350 AATATTATTAT
130 AATACTATTAC
92072361 TATTATTATTATTAT
1 TATTATTATTATTAT
92072376 TGTAATAGGC
Statistics
Matches: 147, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
138 63 0.43
140 31 0.21
141 53 0.36
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (140 bp):
TATTATTATTATTATATATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATAT
TAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATATACTTTTTGTATTTCA
ATACTATTAC
Found at i:92072360 original size:3 final size:3
Alignment explanation
Indices: 92072352--92072376 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
92072342 TGTATTTCAA
92072352 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
92072377 GTAATAGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:92073754 original size:29 final size:25
Alignment explanation
Indices: 92073724--92073774 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
92073714 TCCTTCATAT
*
92073724 ATATATTATATAATTTATTTATTTTAA
1 ATATTTTATAT-A-TTATTTATTTTAA
*
92073751 ATATTTTGTATATTATTTATTTTA
1 ATATTTTATATATTATTTATTTTA
92073775 CTTTAAACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 12 0.55
26 1 0.05
27 9 0.41
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
ATATTTTATATATTATTTATTTTAA
Found at i:92073793 original size:30 final size:28
Alignment explanation
Indices: 92073729--92073793 Score: 67
Period size: 30 Copynumber: 2.2 Consensus size: 28
92073719 CATATATATA
* *
92073729 TTATATAATTTATTTATTTTAAATATTT
1 TTATATAATTTATTTACTTTAAACATTT
* *
92073757 TGTATATTATTTATTTTACTTTAAACCTTAT
1 T-TATATAATTTA-TTTACTTTAAACATT-T
92073788 TTATAT
1 TTATAT
92073794 GTAAAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 1 0.03
29 10 0.33
30 17 0.57
31 2 0.07
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (28 bp):
TTATATAATTTATTTACTTTAAACATTT
Found at i:92073818 original size:12 final size:12
Alignment explanation
Indices: 92073803--92073877 Score: 59
Period size: 12 Copynumber: 6.2 Consensus size: 12
92073793 TGTAAAAAAA
92073803 TATTTATTTTAT
1 TATTTATTTTAT
92073815 TATTTTATTATGTAT
1 TA-TTTATT-T-TAT
*
92073830 TATTTATTATAT
1 TATTTATTTTAT
*
92073842 TATTTATATT-T
1 TATTTATTTTAT
92073853 TATTGTA---TAT
1 TATT-TATTTTAT
*
92073863 TATTTATTATAT
1 TATTTATTTTAT
92073875 TAT
1 TAT
92073878 GTATAATTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
9 3 0.06
10 5 0.10
11 5 0.10
12 21 0.40
13 6 0.12
14 7 0.13
15 5 0.10
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (12 bp):
TATTTATTTTAT
Found at i:92073842 original size:19 final size:19
Alignment explanation
Indices: 92073814--92073886 Score: 68
Period size: 19 Copynumber: 4.1 Consensus size: 19
92073804 ATTTATTTTA
*
92073814 TTATTTTATTATGTATTAT
1 TTATTATATTATGTATTAT
*
92073833 TTATTATATTATTTA-TA-
1 TTATTATATTATGTATTAT
92073850 TT-TTAT-TGTA--TATTAT
1 TTATTATAT-TATGTATTAT
*
92073866 TTATTATATTATGTATAAT
1 TTATTATATTATGTATTAT
92073885 TT
1 TT
92073887 TAAAATTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
14 2 0.05
15 3 0.07
16 8 0.18
17 8 0.18
18 3 0.07
19 20 0.45
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (19 bp):
TTATTATATTATGTATTAT
Found at i:92073861 original size:21 final size:21
Alignment explanation
Indices: 92073803--92073882 Score: 87
Period size: 21 Copynumber: 4.0 Consensus size: 21
92073793 TGTAAAAAAA
* *
92073803 TATTTATTTTATTAT-TTTAT
1 TATTTATTATATTATGTATAT
*
92073823 TATGTATTAT-TTAT-TATAT
1 TATTTATTATATTATGTATAT
*
92073842 TATTTA-TATTTTATTGTATAT
1 TATTTATTATATTA-TGTATAT
92073863 TATTTATTATATTATGTATA
1 TATTTATTATATTATGTATA
92073883 ATTTTAAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
18 3 0.06
19 16 0.31
20 9 0.18
21 17 0.33
22 6 0.12
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (21 bp):
TATTTATTATATTATGTATAT
Found at i:92073864 original size:33 final size:33
Alignment explanation
Indices: 92073810--92073888 Score: 113
Period size: 33 Copynumber: 2.3 Consensus size: 33
92073800 AAATATTTAT
*
92073810 TTTATTATTTTATTATGTATTATTTATTATATTA
1 TTTA-TATTTTATTATATATTATTTATTATATTA
*
92073844 TTTATATTTTATTGTATATTATTTATTATATTA
1 TTTATATTTTATTATATATTATTTATTATATTA
*
92073877 TGTATAATTTTA
1 TTTAT-ATTTTA
92073889 AAATTTAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
33 31 0.76
34 10 0.24
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (33 bp):
TTTATATTTTATTATATATTATTTATTATATTA
Found at i:92073940 original size:15 final size:15
Alignment explanation
Indices: 92073901--92073941 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
92073891 ATTTAAAATT
92073901 ATTATTAAATATTAC
1 ATTATTAAATATTAC
* *
92073916 ATTTTTATATA-T-C
1 ATTATTAAATATTAC
92073929 ATTATTAAATATT
1 ATTATTAAATATT
92073942 TAGTATGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATTAAATATTAC
Found at i:92074284 original size:18 final size:18
Alignment explanation
Indices: 92074261--92074303 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
92074251 TATCTCATAA
92074261 ATTATTTGTTATTTTTAT
1 ATTATTTGTTATTTTTAT
*
92074279 ATTATTTATTATTTTTAT
1 ATTATTTGTTATTTTTAT
92074297 A-TATTTG
1 ATTATTTG
92074304 CATGAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.70
Consensus pattern (18 bp):
ATTATTTGTTATTTTTAT
Found at i:92074393 original size:14 final size:14
Alignment explanation
Indices: 92074352--92074395 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
92074342 TTTGCATGAA
* *
92074352 ATATTATTTTATAT
1 ATATTATTATATTT
92074366 ATATTATGTA-ATTT
1 ATATTAT-TATATTT
92074380 ATATTATTATATTT
1 ATATTATTATATTT
92074394 AT
1 AT
92074396 TGTTTTCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 2 0.08
14 23 0.88
15 1 0.04
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (14 bp):
ATATTATTATATTT
Found at i:92074395 original size:23 final size:24
Alignment explanation
Indices: 92074337--92074395 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 24
92074327 TTATTTTAAG
*
92074337 TTATATTTGCATGAAATATTATTTTA
1 TTATATTT--ATGAAATATTATATTA
*
92074363 -TATATATTATGTAAT-TTATATTA
1 TTATAT-TTATGAAATATTATATTA
92074386 TTATATTTAT
1 TTATATTTAT
92074396 TGTTTTCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 11 0.38
24 11 0.38
25 5 0.17
26 2 0.07
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.58
Consensus pattern (24 bp):
TTATATTTATGAAATATTATATTA
Found at i:92074460 original size:119 final size:112
Alignment explanation
Indices: 92074337--92074550 Score: 268
Period size: 112 Copynumber: 1.8 Consensus size: 112
92074327 TTATTTTAAG
* **
92074337 TTATATTTGCATGAAATATTATTTTATATATATTATGTAATTTATAT-TATTATATTTATTGTTT
1 TTATATTTGCATGAAATATTA----ATATATATTATGTAATTT-T-TGTAGT-TATTTATCATTT
* * *
92074401 TCTATGTTGTATTTTGCATGAAATGTTAATGTATGTATATTTATGTTATTTATGA
59 TCTATATTATA-TTTGCATGAAATGTTAAAGTATGTATATTTATGTTATTTATGA
* * *
92074456 TTATATTTGCATGAAATGTTAATGTATATTATGTAATTTTTGTCGTTATTTATCATTTTCTATAT
1 TTATATTTGCATGAAATATTAATATATATTATGTAATTTTTGTAGTTATTTATCATTTTCTATAT
92074521 TATATTTGCATGAAATGTTAAAGTATGTAT
66 TATATTTGCATGAAATGTTAAAGTATGTAT
92074551 CATGTAGTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
112 25 0.29
113 20 0.24
114 3 0.04
115 17 0.20
119 20 0.24
ACGTcount: A:0.30, C:0.04, G:0.12, T:0.54
Consensus pattern (112 bp):
TTATATTTGCATGAAATATTAATATATATTATGTAATTTTTGTAGTTATTTATCATTTTCTATAT
TATATTTGCATGAAATGTTAAAGTATGTATATTTATGTTATTTATGA
Found at i:92074474 original size:48 final size:49
Alignment explanation
Indices: 92074387--92074482 Score: 144
Period size: 48 Copynumber: 2.0 Consensus size: 49
92074377 TTTATATTAT
*
92074387 TATATTTATTGTTTTCTATGTTGTATTTTGCATGAAATGTTAATGTATG
1 TATATTTATTGTTTTCTATGTTATATTTTGCATGAAATGTTAATGTATG
92074436 TATATTTA-TGTTATT-TATGATTATA-TTTGCATGAAATGTTAATGTAT
1 TATATTTATTGTT-TTCTATG-TTATATTTTGCATGAAATGTTAATGTAT
92074483 ATTATGTAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
48 30 0.68
49 14 0.32
ACGTcount: A:0.28, C:0.03, G:0.15, T:0.54
Consensus pattern (49 bp):
TATATTTATTGTTTTCTATGTTATATTTTGCATGAAATGTTAATGTATG
Found at i:92078703 original size:9 final size:9
Alignment explanation
Indices: 92078689--92078721 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
92078679 GTTAAACGAA
92078689 TCGAGTTAT
1 TCGAGTTAT
*
92078698 TCGAGTTAA
1 TCGAGTTAT
92078707 TCGAGTTAT
1 TCGAGTTAT
92078716 TCGAGT
1 TCGAGT
92078722 CAACTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:92078710 original size:18 final size:18
Alignment explanation
Indices: 92078687--92078721 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
92078677 GAGTTAAACG
92078687 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
92078705 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
92078722 CAACTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:92078801 original size:9 final size:9
Alignment explanation
Indices: 92078772--92078808 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
92078762 TGATTTTTCG
92078772 AATTCGAAT
1 AATTCGAAT
*
92078781 AACTCGAAT
1 AATTCGAAT
92078790 AATTCGAAT
1 AATTCGAAT
*
92078799 AATTTGAAT
1 AATTCGAAT
92078808 A
1 A
92078809 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:92079846 original size:5 final size:5
Alignment explanation
Indices: 92079836--92079863 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
92079826 GAAAATTTTT
92079836 GATTC GATTC GATTC GATTC GATTC GAT
1 GATTC GATTC GATTC GATTC GATTC GAT
92079864 CGAATGCTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (5 bp):
GATTC
Found at i:92087383 original size:45 final size:44
Alignment explanation
Indices: 92087241--92087507 Score: 275
Period size: 45 Copynumber: 6.0 Consensus size: 44
92087231 TCCTCTAGAA
* * * * *
92087241 AGCAAATTTGGCGTCTCTGTATTGATGGAGAGCAGATCAAAGTT
1 AGCAGATTTGGCGTCTCTATATTGACGGGGAGCAGATCAAAGAT
* * * * *
92087285 AGCAGATTTGGTGTCTCTGTATTGACGGAGAGCAGATCGAAGAA
1 AGCAGATTTGGCGTCTCTATATTGACGGGGAGCAGATCAAAGAT
* * *
92087329 AGTAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTATATT-GACGGGGAGCAGATCAAAGAT
* * * *
92087374 AGTAAATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTATATT-GACGGGGAGCAGATCAAAGAT
* * * * * *
92087419 AACAGATTTGGCATCTCCATATTGA-TGGGAGCAAATCGAAGAT
1 AGCAGATTTGGCGTCTCTATATTGACGGGGAGCAGATCAAAGAT
* *
92087462 AGCAGATTTGGCGTCTCTATATTAGACGGGGTGCAAATCAAAGAT
1 AGCAGATTTGGCGTCTCTATATT-GACGGGGAGCAGATCAAAGAT
92087507 A
1 A
92087508 TCAGCATGGT
Statistics
Matches: 191, Mismatches: 29, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
43 36 0.19
44 63 0.33
45 92 0.48
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (44 bp):
AGCAGATTTGGCGTCTCTATATTGACGGGGAGCAGATCAAAGAT
Found at i:92087481 original size:88 final size:89
Alignment explanation
Indices: 92087240--92087507 Score: 335
Period size: 88 Copynumber: 3.0 Consensus size: 89
92087230 ATCCTCTAGA
* * * *
92087240 AAGCAAATTTGGCGTCTCTGTATTGATGGAGAGCAGATCAAAGTTAGCAGATTTGGTGTCTCTGT
1 AAGCAGATTTGGCGTCTCTGTATTGATGG-GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTAT
*
92087305 ATT-GACGGAGAGCAGATCGAAGA-
65 ATTAGACGGGGAGCAGATCGAAGAT
* * * *
92087328 AAGTAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCAAAGATAGTAAATTTGGCATCTCTA
1 AAGCAGATTTGGCGTCTCTGTATT-GAT-GGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTA
92087393 TATTAGACGGGGAGCAGATCGAAGAT
64 TATTAGACGGGGAGCAGATCGAAGAT
* ** * *
92087419 AA-CAGATTTGGCATCTCCATATTGATGGGAGCAAATCGAAGATAGCAGATTTGGCGTCTCTATA
1 AAGCAGATTTGGCGTCTCTGTATTGATGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTATA
* * *
92087483 TTAGACGGGGTGCAAATCAAAGAT
66 TTAGACGGGGAGCAGATCGAAGAT
92087507 A
1 A
92087508 TCAGCATGGT
Statistics
Matches: 155, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
88 77 0.50
89 38 0.25
90 38 0.25
91 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.27
Consensus pattern (89 bp):
AAGCAGATTTGGCGTCTCTGTATTGATGGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTATA
TTAGACGGGGAGCAGATCGAAGAT
Found at i:92087485 original size:133 final size:133
Alignment explanation
Indices: 92087244--92087507 Score: 341
Period size: 133 Copynumber: 2.0 Consensus size: 133
92087234 TCTAGAAAGC
* * * * * ** **
92087244 AAATTTGGCGTCTCTGTATTGATGGAGAGCAGATCAAAGTTAGCAGATTTGGTGTCTCTGTATTG
1 AAATTTGGCATCTCTATATTGACGGAGAGCAGATCAAAGATAACAGATTTGGCATCTCCATATTG
* * * * *
92087309 ACGGAGAGCAGATCGAAGAAAGTAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCAAAGAT
66 ACGGAGAGCAAATCGAAGAAAGCAGATTTGGCGTCTCTATATTAGACGGGGAGCAAATCAAAGAT
92087374 AGT
131 AGT
* *
92087377 AAATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCATCTCCATATT
1 AAATTTGGCATCTCTATATT-GACGGAGAGCAGATCAAAGATAACAGATTTGGCATCTCCATATT
* * *
92087442 GATGG-GAGCAAATCGAAGATAGCAGATTTGGCGTCTCTATATTAGACGGGGTGCAAATCAAAGA
65 GACGGAGAGCAAATCGAAGAAAGCAGATTTGGCGTCTCTATATTAGACGGGGAGCAAATCAAAGA
92087506 TA
130 TA
92087508 TCAGCATGGT
Statistics
Matches: 111, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
133 72 0.65
134 39 0.35
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (133 bp):
AAATTTGGCATCTCTATATTGACGGAGAGCAGATCAAAGATAACAGATTTGGCATCTCCATATTG
ACGGAGAGCAAATCGAAGAAAGCAGATTTGGCGTCTCTATATTAGACGGGGAGCAAATCAAAGAT
AGT
Found at i:92089004 original size:25 final size:25
Alignment explanation
Indices: 92088970--92089024 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
92088960 TTTTAATCCT
*
92088970 TTTTATATATTATATA-ATTTATTTA
1 TTTTAAATATTATATATA-TTATTTA
* *
92088995 TTTTAAATATTTTGTATATTATTTA
1 TTTTAAATATTATATATATTATTTA
92089020 TTTTA
1 TTTTA
92089025 CTTTAAACCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 25 0.96
26 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTTAAATATTATATATATTATTTA
Found at i:92089043 original size:30 final size:28
Alignment explanation
Indices: 92088979--92089043 Score: 67
Period size: 30 Copynumber: 2.2 Consensus size: 28
92088969 TTTTTATATA
* *
92088979 TTATATAATTTATTTATTTTAAATATTT
1 TTATATAATTTATTTACTTTAAACATTT
* *
92089007 TGTATATTATTTATTTTACTTTAAACCTTAT
1 T-TATATAATTTA-TTTACTTTAAACATT-T
92089038 TTATAT
1 TTATAT
92089044 GTAAAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 1 0.03
29 10 0.33
30 17 0.57
31 2 0.07
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (28 bp):
TTATATAATTTATTTACTTTAAACATTT
Found at i:92089093 original size:19 final size:19
Alignment explanation
Indices: 92089071--92089135 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 19
92089061 TTATTATTTT
92089071 TTATGTATTATTTATTATA
1 TTATGTATTATTTATTATA
*
92089090 TTATTTA-TA-TT-TTAT-
1 TTATGTATTATTTATTATA
92089105 TGTA--TATTATTTATTATA
1 T-TATGTATTATTTATTATA
*
92089123 TTATGTATAATTT
1 TTATGTATTATTT
92089136 TAAAATTTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
14 2 0.05
15 3 0.08
16 8 0.22
17 8 0.22
18 3 0.08
19 13 0.35
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.65
Consensus pattern (19 bp):
TTATGTATTATTTATTATA
Found at i:92089097 original size:33 final size:34
Alignment explanation
Indices: 92089060--92089137 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 34
92089050 AAATATTTAT
*
92089060 TTTATTATTTT-TTATGTATTATTTATTATATTA
1 TTTATTATTTTATTATATATTATTTATTATATTA
*
92089093 TTTA-TATTTTATTGTATATTATTTATTATATTA
1 TTTATTATTTTATTATATATTATTTATTATATTA
* *
92089126 TGTATAATTTTA
1 TTTATTATTTTA
92089138 AAATTTCAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
32 6 0.15
33 27 0.69
34 6 0.15
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (34 bp):
TTTATTATTTTATTATATATTATTTATTATATTA
Found at i:92089105 original size:26 final size:28
Alignment explanation
Indices: 92089053--92089135 Score: 88
Period size: 26 Copynumber: 3.2 Consensus size: 28
92089043 TGTAAAAAAA
*
92089053 TATTTATTTTATTATTT-T-TTATGTAT
1 TATTTATTATATTATTTATATTATGTAT
92089079 TATTTATTATATTATTTATATT-T-TAT
1 TATTTATTATATTATTTATATTATGTAT
* *
92089105 TGTATATTAT-TTA-TTATATTATGTAT
1 TATTTATTATATTATTTATATTATGTAT
*
92089131 AATTT
1 TATTT
92089136 TAAAATTTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
24 7 0.15
25 4 0.09
26 32 0.68
27 2 0.04
28 2 0.04
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (28 bp):
TATTTATTATATTATTTATATTATGTAT
Found at i:92089119 original size:7 final size:7
Alignment explanation
Indices: 92089060--92089126 Score: 59
Period size: 7 Copynumber: 9.7 Consensus size: 7
92089050 AAATATTTAT
92089060 TTTATTA
1 TTTATTA
*
92089067 TTTTTTA
1 TTTATTA
*
92089074 TGTATTA
1 TTTATTA
92089081 TTTATTA
1 TTTATTA
92089088 --TATTA
1 TTTATTA
92089093 TTTA-TA
1 TTTATTA
*
92089099 TTTTATTG
1 -TTTATTA
*
92089107 TATATTA
1 TTTATTA
92089114 TTTATTA
1 TTTATTA
92089121 TATTAT
1 T-TTAT
92089127 GTATAATTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
5 5 0.11
6 2 0.04
7 35 0.74
8 5 0.11
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (7 bp):
TTTATTA
Found at i:92089119 original size:14 final size:13
Alignment explanation
Indices: 92089053--92089126 Score: 58
Period size: 12 Copynumber: 6.2 Consensus size: 13
92089043 TGTAAAAAAA
92089053 TATTTATTT-TAT
1 TATTTATTTATAT
*
92089065 TATTT-TTTAT-G
1 TATTTATTTATAT
92089076 TA-TTA-TT-TAT
1 TATTTATTTATAT
92089086 TATATTATTTATA-
1 TAT-TTATTTATAT
92089099 T-TTTATTGTATAT
1 TATTTATT-TATAT
92089112 TATTTA-TTATAT
1 TATTTATTTATAT
92089124 TAT
1 TAT
92089127 GTATAATTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 20
0.69 0.03 0.28
Matches are distributed among these distances:
9 1 0.02
10 6 0.12
11 10 0.20
12 22 0.44
13 5 0.10
14 6 0.12
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (13 bp):
TATTTATTTATAT
Found at i:92089190 original size:15 final size:15
Alignment explanation
Indices: 92089151--92089191 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
92089141 TTTCAAAATT
92089151 ATTATTAAATATTAC
1 ATTATTAAATATTAC
* *
92089166 ATTTTTATATA-T-C
1 ATTATTAAATATTAC
92089179 ATTATTAAATATT
1 ATTATTAAATATT
92089192 TAGTATGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATTAAATATTAC
Found at i:92098664 original size:75 final size:74
Alignment explanation
Indices: 92098547--92098882 Score: 280
Period size: 75 Copynumber: 4.7 Consensus size: 74
92098537 TGATATTTTT
* *
92098547 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGCC
1 ATTTCT-TTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT
92098612 GAGGTATTTTCA
63 GAGGTATTTTCA
*
92098624 ATTTCTTTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGA
1 ATTTC-TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGA
*
92098689 GGTATTTTTA
65 GGTATTTTCA
* *
92098699 GTTTC-----T-----ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAG
1 ATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAG
92098754 GTA--TT--
66 GTATTTTCA
** * * * * * *
92098759 -TTT-TAGTTTC---TATCAACTCATGA-TACGATAGGTGAGTTGGGCCTCGAGACACACGCTGA
1 ATTTCTTTTTTCAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGA
92098818 GGTATTTTCA
65 GGTATTTTCA
* * *
92098828 AGTTATGTTTTTTCAAAAAAAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCT
1 A-TT-TCTTTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
92098883 TTTAGTCTCT
Statistics
Matches: 215, Mismatches: 19, Indels: 47
0.77 0.07 0.17
Matches are distributed among these distances:
59 3 0.01
62 2 0.01
63 1 0.00
64 50 0.23
65 46 0.21
66 1 0.00
67 2 0.01
69 1 0.00
71 2 0.01
72 1 0.00
73 5 0.02
75 62 0.29
77 11 0.05
78 1 0.00
79 1 0.00
80 26 0.12
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (74 bp):
ATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAG
GTATTTTCA
Found at i:92098797 original size:65 final size:65
Alignment explanation
Indices: 92098641--92098825 Score: 293
Period size: 65 Copynumber: 2.9 Consensus size: 65
92098631 TTTTTCAAAA
* *
92098641 ATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA-TTTTTAGTTTCT
1 ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTTAGTTTCT
92098705 ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTTAGTTTCT
1 ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTTAGTTTCT
* * * *
92098770 ATCAACTCATGA-TACGATAGGTGAGTTGGGCCTCGAGACACACGCTGAGGTATTTT
1 ATCAACTCAT-ATTACGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTT
92098826 CAAGTTATGT
Statistics
Matches: 113, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
64 50 0.44
65 62 0.55
66 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (65 bp):
ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTTAGTTTCT
Found at i:92099265 original size:88 final size:88
Alignment explanation
Indices: 92099115--92099275 Score: 268
Period size: 88 Copynumber: 1.8 Consensus size: 88
92099105 GGAGCAGGTT
* * *
92099115 GAAGCTACAAATCTTTGCTCCCTGAAATGGTACTGGAGAGGCTCAAAGCCACCATTCGTATCTTC
1 GAAGCTACAAATCTTTGCTCCCTGAAATGGCACTGGAGAGGCTCAAAGCCACCATTCATATCTCC
92099180 TTAAAGTTCCAGCGGATTAAATC
66 TTAAAGTTCCAGCGGATTAAATC
* *
92099203 GAAGCTACAAATCTTTTCTCCCTGAAATGGCACTGGAGAGGCTCGAAGCCACCATTCATATCTCC
1 GAAGCTACAAATCTTTGCTCCCTGAAATGGCACTGGAGAGGCTCAAAGCCACCATTCATATCTCC
*
92099268 TTGAAGTT
66 TTAAAGTT
92099276 TCAACGGAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 67 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (88 bp):
GAAGCTACAAATCTTTGCTCCCTGAAATGGCACTGGAGAGGCTCAAAGCCACCATTCATATCTCC
TTAAAGTTCCAGCGGATTAAATC
Found at i:92100073 original size:14 final size:14
Alignment explanation
Indices: 92100054--92100090 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
92100044 TGCGCGGTGG
*
92100054 CCGGCGGTGACGGA
1 CCGGCGGCGACGGA
92100068 CCGGCGGCGACGGA
1 CCGGCGGCGACGGA
92100082 CCGGCGGCG
1 CCGGCGGCG
92100091 GTGACGGCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.11, C:0.35, G:0.51, T:0.03
Consensus pattern (14 bp):
CCGGCGGCGACGGA
Found at i:92100621 original size:22 final size:21
Alignment explanation
Indices: 92100595--92100650 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
92100585 GTTATTTTCC
92100595 ATATTATATATTAAATTAACAT
1 ATATTAT-TATTAAATTAACAT
** *
92100617 ATATTATTATTACTTTAACTT
1 ATATTATTATTAAATTAACAT
92100638 ATTATTATTATTA
1 A-TATTATTATTA
92100651 TTTTTATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (21 bp):
ATATTATTATTAAATTAACAT
Found at i:92100626 original size:3 final size:3
Alignment explanation
Indices: 92100618--92100782 Score: 74
Period size: 3 Copynumber: 53.7 Consensus size: 3
92100608 AATTAACATA
* * *
92100618 TAT TAT TAT TACT T-T AACT TAT TAT TAT TAT TAT TTT TA- TAT TAC
1 TAT TAT TAT TA-T TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
92100663 TAT TAT AAT TA- TAT T-T TAT TTT TGT GTATT TATT TAT TCAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TA-T TA-T TAT T-AT TAT TAT
* * * * *
92100709 TAT TAAT TCAT TAA T-T TAT TAT TAT TAA CA- TAT TCT TAT TAT TTT
1 TAT T-AT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
92100754 TAT TAAT GTAT TAG TAT TAT TAT ATAT TA
1 TAT T-AT -TAT TAT TAT TAT TAT -TAT TA
92100783 GTGTATATTT
Statistics
Matches: 123, Mismatches: 23, Indels: 32
0.69 0.13 0.18
Matches are distributed among these distances:
2 11 0.09
3 83 0.67
4 27 0.22
5 2 0.02
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:92100677 original size:17 final size:18
Alignment explanation
Indices: 92100619--92100674 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 18
92100609 ATTAACATAT
92100619 ATTATTATTACT-TTA-A
1 ATTATTATTACTATTATA
* * *
92100635 CTTATTATTATTATTATT
1 ATTATTATTACTATTATA
*
92100653 TTTA-TATTACTATTATA
1 ATTATTATTACTATTATA
92100670 ATTAT
1 ATTAT
92100675 ATTTTATTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
16 10 0.33
17 17 0.57
18 3 0.10
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTATTATTACTATTATA
Found at i:92100830 original size:29 final size:29
Alignment explanation
Indices: 92100771--92100840 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
92100761 GTATTAGTAT
*
92100771 TATTATATATTAGTGTATATTTTTTATTA
1 TATTATATATTAGTGTATATTATTTATTA
*
92100800 TATTATATGTATA-TGTATATATATTTATATA
1 TATTATATAT-TAGTGTATAT-TATTTAT-TA
*
92100831 TAGTAT-TATT
1 TATTATATATT
92100841 TTTAATTACT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
29 17 0.50
30 10 0.29
31 7 0.21
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (29 bp):
TATTATATATTAGTGTATATTATTTATTA
Found at i:92100839 original size:12 final size:11
Alignment explanation
Indices: 92100768--92100839 Score: 60
Period size: 10 Copynumber: 6.5 Consensus size: 11
92100758 AATGTATTAG
92100768 TATTAT-TATA
1 TATTATATATA
*
92100778 TATTAGTGTATA
1 TATTA-TATATA
* *
92100790 TTTTTTAT-TA
1 TATTATATATA
*
92100800 TATTATATGTA
1 TATTATATATA
92100811 TATGTATATATA
1 TAT-TATATATA
92100823 T-TTATATATA
1 TATTATATATA
92100833 GTATTAT
1 -TATTAT
92100840 TTTTAATTAC
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
10 21 0.42
11 10 0.20
12 19 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (11 bp):
TATTATATATA
Found at i:92100846 original size:131 final size:128
Alignment explanation
Indices: 92100705--92101142 Score: 479
Period size: 131 Copynumber: 3.3 Consensus size: 128
92100695 TTTATTCATT
* * * * *
92100705 TTATTATTAATT-CATTAATTTATTATTATTAACATATTCTTATTATTTTTATTAATGTATTAGT
1 TTATTTTTAATTACTTTATTTTATTATTATTAATATATTCTTATTATTTTTATTAAT-TATTATT
92100769 ATTATTATATATTAGTGTATATTTTTTATTATATTATATGTATATGTATATATATTTATATATAG
65 ATTATTATATATTAGTGTATATTTTTTA-T-TA-TATATGTATATGTATATATATTTATATATAG
92100834 TA
127 TA
* * * * *
92100836 TTATTTTTAATTACTTTATTTTAATATTTTATTATATTATATTTCCTTTTTGTATTTCAATACTA
1 TTATTTTTAATTACTTTATTTT-AT-TATTATTA-A-TATA-TT-CTTATTAT-TTTTATTA--A
92100901 TTATTATTATTATTATATATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATA
57 TTATTATTATTATTATATATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATA
92100966 TATAGTA
122 TATAGTA
* * * * *
92100973 TTATTTTTAATTACTTTATTTTAATATTTTTATTATATT-ATATTTGCTTTTTGTATTTCAA-TA
1 TTATTTTTAATTACTTTATTTTATTATTATTAATATATTCTTA-TT--ATTTT-TA-TT-AATTA
* *
92101036 TTATTATTATTAT-TATTAGTGTATATTTTTTATTATATATGTGTATGTATATATATTTATATAG
60 TTATTATTATTATATATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATATAT
*
92101100 AGCA
125 AGTA
* * * *
92101104 TTATTTTTAATTATTTTATTTTAATATTTTTATTATATT
1 TTATTTTTAATTACTTTATTTTATTATTATTAATATATT
92101143 ATATTTGCTT
Statistics
Matches: 268, Mismatches: 23, Indels: 32
0.83 0.07 0.10
Matches are distributed among these distances:
130 1 0.00
131 103 0.38
132 27 0.10
133 9 0.03
134 8 0.03
135 8 0.03
136 4 0.01
137 57 0.21
138 8 0.03
139 7 0.03
140 34 0.13
141 2 0.01
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.61
Consensus pattern (128 bp):
TTATTTTTAATTACTTTATTTTATTATTATTAATATATTCTTATTATTTTTATTAATTATTATTA
TTATTATATATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATATATAGTA
Found at i:92100909 original size:137 final size:134
Alignment explanation
Indices: 92100762--92101187 Score: 689
Period size: 131 Copynumber: 3.1 Consensus size: 134
92100752 TTTATTAATG
*
92100762 TATTAGTATTATTATATATTAGTGTATATTTTTTATTATATTATATGTATATGTATATATATTTA
1 TATTATTATTATTAT-TATTAGTGTATATTTTTTA-T-TA-TATATGTATATGTATATATATTTA
*
92100827 TATATAGTATTATTTTTAATTACTTTATTTTAATA-TTTTATTATATTATATTTCCTTTTTGTAT
62 TATATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTAT
92100891 TTCAATAC
127 TTCAATAC
92100899 TATTATTATTATTATTATATATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTA
1 ---TATTATTATTATTAT-TATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTA
92100964 TATATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTAT
62 TATATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTAT
92101029 TTC-A-A-
127 TTCAATAC
*
92101034 TATTATTATTATTATTATTAGTGTATATTTTTTATTATATATGTGTATGTATATATATTTATATA
1 TATTATTATTATTATTATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATATA
* * *
92101099 GAGCATTATTTTTAATTATTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTATTTCA
66 TAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTATTTCA
92101164 ATAC
131 ATAC
*
92101168 TATTACTATTATTATTATTA
1 TATTATTATTATTATTATTA
92101188 TTATTATTAT
Statistics
Matches: 275, Mismatches: 7, Indels: 14
0.93 0.02 0.05
Matches are distributed among these distances:
131 110 0.40
132 16 0.06
133 1 0.00
134 19 0.07
136 1 0.00
137 60 0.22
138 33 0.12
139 1 0.00
140 34 0.12
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (134 bp):
TATTATTATTATTATTATTAGTGTATATTTTTTATTATATATGTATATGTATATATATTTATATA
TAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTGTATTTCA
ATAC
Found at i:92101182 original size:3 final size:3
Alignment explanation
Indices: 92101168--92101218 Score: 75
Period size: 3 Copynumber: 16.7 Consensus size: 3
92101158 ATTTCAATAC
* *
92101168 TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
92101217 TA
1 TA
92101219 GTGTATATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:92107730 original size:22 final size:23
Alignment explanation
Indices: 92107693--92107739 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
92107683 CGATCATTTT
* *
92107693 AATAAAGTATTTTGGTTTATTAA
1 AATAAAGTATTTTGGTCTATGAA
*
92107716 AATAATGT-TTTTGGTCTATGAA
1 AATAAAGTATTTTGGTCTATGAA
92107738 AA
1 AA
92107740 ACTAGAAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (23 bp):
AATAAAGTATTTTGGTCTATGAA
Found at i:92109336 original size:28 final size:28
Alignment explanation
Indices: 92109305--92109359 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
92109295 AACATAAAAT
92109305 ACAAGATCTTAAAATAAACAAT-CATAAG
1 ACAA-ATCTTAAAATAAACAATACATAAG
* * *
92109333 ACAATTTTTAAAATAAATAATACATAA
1 ACAAATCTTAAAATAAACAATACATAA
92109360 AAAAATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.58, C:0.11, G:0.04, T:0.27
Consensus pattern (28 bp):
ACAAATCTTAAAATAAACAATACATAAG
Found at i:92109380 original size:14 final size:15
Alignment explanation
Indices: 92109341--92109378 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
92109331 AGACAATTTT
92109341 TAAAATAAATAATACA
1 TAAAA-AAATAATACA
*
92109357 TAAAAAAATAATATA
1 TAAAAAAATAATACA
92109372 TAAAAAA
1 TAAAAAA
92109379 TAGTTTTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (15 bp):
TAAAAAAATAATACA
Found at i:92113980 original size:18 final size:18
Alignment explanation
Indices: 92113957--92113993 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
92113947 GGGTATACTG
92113957 ACTTGTGCCACACAGCCA
1 ACTTGTGCCACACAGCCA
92113975 ACTTGTGCCACACAGCCA
1 ACTTGTGCCACACAGCCA
92113993 A
1 A
92113994 GCCACACGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.38, G:0.16, T:0.16
Consensus pattern (18 bp):
ACTTGTGCCACACAGCCA
Found at i:92117113 original size:3 final size:3
Alignment explanation
Indices: 92117092--92117323 Score: 153
Period size: 3 Copynumber: 76.7 Consensus size: 3
92117082 AAGAGAAATG
* * * ** * *
92117092 TAA TAA TTA TAA TAG TAA TAA TAA AAA TAA TGG TAG TAA TAA TAA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
92117140 TAA TAA TAA TAG TAA TAA AAA TAAA TAT TAA TAA TAT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
* * * ** * * * *
92117186 TAAA GAA TAA CAA TAG TAA GGA CAA TAA TAA AAA GAA TAA TTA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
92117232 TAA TAC TAC TAC TAA AAA TAA TAA TGA TAG TAA TAA TAA TAA -AA GTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
* * *
92117280 TAA TAA TAA TAA TTAA TGA TAA TAA AAA TAA AAA TAA TAA -AA TA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
92117324 GCAAAAATAA
Statistics
Matches: 173, Mismatches: 50, Indels: 12
0.74 0.21 0.05
Matches are distributed among these distances:
2 4 0.02
3 159 0.92
4 10 0.06
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:92118740 original size:60 final size:60
Alignment explanation
Indices: 92118662--92118798 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
92118652 TAGTGTTAAC
* *
92118662 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
92118723 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
92118783 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
92118799 GAACACAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 53 0.78
61 13 0.19
62 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:92118762 original size:28 final size:27
Alignment explanation
Indices: 92118661--92118762 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
92118651 TTAGTGTTAA
* *
92118661 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
92118689 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
92118721 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
92118749 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
92118763 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.46
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:92123633 original size:18 final size:18
Alignment explanation
Indices: 92123603--92123637 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
92123593 ATAATTTTTA
92123603 TATAATAAAATTAAAATG
1 TATAATAAAATTAAAATG
92123621 TATAA-AAATATTAAAAT
1 TATAATAAA-ATTAAAAT
92123638 AAAGTTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
TATAATAAAATTAAAATG
Found at i:92126173 original size:19 final size:21
Alignment explanation
Indices: 92126117--92126180 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
92126107 AAAGTGGAAG
92126117 ATGCTAGAATATCAAAGAGAA
1 ATGCTAGAATATCAAAGAGAA
*
92126138 ATGCTAGAATATTAAAGAGAA
1 ATGCTAGAATATCAAAGAGAA
92126159 A-G-TAG-ATATGCAAAGAGAA
1 ATGCTAGAATAT-CAAAGAGAA
92126178 ATG
1 ATG
92126181 GAAAAACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.10
19 12 0.31
20 2 0.05
21 21 0.54
ACGTcount: A:0.52, C:0.06, G:0.22, T:0.20
Consensus pattern (21 bp):
ATGCTAGAATATCAAAGAGAA
Found at i:92127845 original size:46 final size:46
Alignment explanation
Indices: 92127783--92128056 Score: 397
Period size: 46 Copynumber: 6.0 Consensus size: 46
92127773 TTTGACATGA
* * * * * *
92127783 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* * * *** *
92127829 TGTCATGGTATCTTTCAACCACGGTGTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
92127875 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
92127921 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
92127967 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
92128013 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
92128057 AGAGCACACT
Statistics
Matches: 207, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 203 0.98
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:92133514 original size:30 final size:30
Alignment explanation
Indices: 92133480--92133558 Score: 113
Period size: 30 Copynumber: 2.6 Consensus size: 30
92133470 GCAGAGACCA
* * *
92133480 ATTTTGACTAGCATGATAATTTTGACCAGT
1 ATTTTGACCAGCATTATAATTTTGACCAAT
*
92133510 ATTTTGGCCAGCATTATAATTTTGACCAAT
1 ATTTTGACCAGCATTATAATTTTGACCAAT
*
92133540 AGTTTGACCAGCATTATAA
1 ATTTTGACCAGCATTATAA
92133559 ACATGGCCAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (30 bp):
ATTTTGACCAGCATTATAATTTTGACCAAT
Found at i:92134400 original size:18 final size:20
Alignment explanation
Indices: 92134358--92134394 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
92134348 ATATTTTATG
*
92134358 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
92134377 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
92134395 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:92136602 original size:46 final size:46
Alignment explanation
Indices: 92136550--92136914 Score: 491
Period size: 46 Copynumber: 8.0 Consensus size: 46
92136540 AGTGTGCTCT
92136550 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
92136596 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
92136642 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
92136688 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGC-AC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
92136733 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
92136779 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** *
92136825 GTGACATGAAATGAATAAGACCATCGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
92136871 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
92136915 TCATGTCAAA
Statistics
Matches: 294, Mismatches: 23, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
45 45 0.15
46 249 0.85
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:92136858 original size:183 final size:183
Alignment explanation
Indices: 92136550--92136914 Score: 516
Period size: 183 Copynumber: 2.0 Consensus size: 183
92136540 AGTGTGCTCT
* * * * ***
92136550 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAG
* ** *
92136615 ACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAACGTGTAAGACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAGACCATCGTTGAAAGATACC
* * * * * *
92136680 ATGGCAGCCTGATATG-AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAC
131 ATGGCAACATGACA-GAAAACGAGTAAGACCATAGTTGAAAGACACCATGGCAC
*
92136733 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAG
1 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAG
* *
92136798 ACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATCGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAGACCATCGTTGAAAGATACC
* *
92136863 ATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
131 ATGGCAACATGACAGAAAACGAGTAAGACCATAGTTGAAAGACACCATGGCA
92136915 TCATGTCAAA
Statistics
Matches: 159, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
182 1 0.01
183 158 0.99
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.21
Consensus pattern (183 bp):
CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAG
ACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAGACCATCGTTGAAAGATACC
ATGGCAACATGACAGAAAACGAGTAAGACCATAGTTGAAAGACACCATGGCAC
Found at i:92138194 original size:19 final size:21
Alignment explanation
Indices: 92138136--92138199 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
92138126 CTCTGATACC
*
92138136 ATGCTAGAATATCAAAGAGAA
1 ATGCTAGTATATCAAAGAGAA
*
92138157 ATGCTAGTATATTAAAGAGAA
1 ATGCTAGTATATCAAAGAGAA
92138178 A-G-TAG-ATATGCAAAGAGAA
1 ATGCTAGTATAT-CAAAGAGAA
92138197 ATG
1 ATG
92138200 GAAAAACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
18 4 0.11
19 12 0.32
20 2 0.05
21 20 0.53
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (21 bp):
ATGCTAGTATATCAAAGAGAA
Found at i:92141519 original size:25 final size:26
Alignment explanation
Indices: 92141479--92141529 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
92141469 TCCATATGTT
*
92141479 TTTTTTATGAGAATGT-TAAAATATA
1 TTTTTTATAAGAATGTATAAAATATA
* *
92141504 TTTTTTATAAGTATGTATCAAATATA
1 TTTTTTATAAGAATGTATAAAATATA
92141530 AATTTAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.39, C:0.02, G:0.10, T:0.49
Consensus pattern (26 bp):
TTTTTTATAAGAATGTATAAAATATA
Found at i:92146507 original size:29 final size:29
Alignment explanation
Indices: 92146475--92146543 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
92146465 TGTTTTCATA
92146475 TTATTTTATGTAAATATTCTCTTTTAAAT
1 TTATTTTATGTAAATATTCTCTTTTAAAT
* ** *
92146504 TTATTATATGTGTATATTCTCTTTTAAGT
1 TTATTTTATGTAAATATTCTCTTTTAAAT
92146533 TTA-TTTATGTA
1 TTATTTTATGTA
92146544 TAATTTGGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 6 0.18
29 28 0.82
ACGTcount: A:0.28, C:0.06, G:0.07, T:0.59
Consensus pattern (29 bp):
TTATTTTATGTAAATATTCTCTTTTAAAT
Found at i:92147060 original size:90 final size:90
Alignment explanation
Indices: 92146897--92147164 Score: 511
Period size: 90 Copynumber: 3.0 Consensus size: 90
92146887 TTTCATGTCG
*
92146897 TTTTCACATATTATTGTTCATACATGTAATTATA-TTTTTGTTTCTTGTTGTTACATCATGGTTA
1 TTTTCACATATTATTGTTCATACATGTAATTATATTTTTTGTTTCTTGTTGTTGCATCATGGTTA
92146961 TATTTCCCATATTCACTCAATATCA
66 TATTTCCCATATTCACTCAATATCA
92146986 TTTTCACATATTATTGTTCATACATGTAATTATATTTTTTGTTTCTTGTTGTTGCATCATGGTTA
1 TTTTCACATATTATTGTTCATACATGTAATTATATTTTTTGTTTCTTGTTGTTGCATCATGGTTA
92147051 TATTTCCCATATTCACTCAATATCA
66 TATTTCCCATATTCACTCAATATCA
92147076 TTTTCACATATTATTGTTCATACATGTAATTATATTTTTTGTTTCTTGTTGTTGCATCATGGTTA
1 TTTTCACATATTATTGTTCATACATGTAATTATATTTTTTGTTTCTTGTTGTTGCATCATGGTTA
*
92147141 TATTTCCCATATTCACTTAATATC
66 TATTTCCCATATTCACTCAATATC
92147165 GATTGTCCTT
Statistics
Matches: 176, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
89 34 0.19
90 142 0.81
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (90 bp):
TTTTCACATATTATTGTTCATACATGTAATTATATTTTTTGTTTCTTGTTGTTGCATCATGGTTA
TATTTCCCATATTCACTCAATATCA
Found at i:92147495 original size:127 final size:128
Alignment explanation
Indices: 92147351--92147594 Score: 436
Period size: 128 Copynumber: 1.9 Consensus size: 128
92147341 AATTTTCGTT
92147351 GCGTGTTTTGGAAATCATGAGGTGATCTCAG-TTTTTGGAGGCTTAAAATATCGTGTCCTAACGT
1 GCGTGTTTTGGAAATCATGAGGTGATCTCAGTTTTTTGGAGGCTTAAAATATCGTGTCCTAACGT
*
92147415 GCTGGATGTGATATTTTATTCCTTTGGAACGAGTGAATCTCAAAATCCAATTGGAGTTGCTTC
66 GCTAGATGTGATATTTTATTCCTTTGGAACGAGTGAATCTCAAAATCCAATTGGAGTTGCTTC
*
92147478 GCGTGTTTTGGAAATCATGAGGTGATCTTAGTTTTTTGGAGGCTTAAAATATCGTGTCCTAACGT
1 GCGTGTTTTGGAAATCATGAGGTGATCTCAGTTTTTTGGAGGCTTAAAATATCGTGTCCTAACGT
* * *
92147543 GTTAGATGTGGTATTTTATTCCTTTGGAACGAGTGAATCTTAAAATCCAATT
66 GCTAGATGTGATATTTTATTCCTTTGGAACGAGTGAATCTCAAAATCCAATT
92147595 CGAATTGTTC
Statistics
Matches: 111, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
127 30 0.27
128 81 0.73
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.38
Consensus pattern (128 bp):
GCGTGTTTTGGAAATCATGAGGTGATCTCAGTTTTTTGGAGGCTTAAAATATCGTGTCCTAACGT
GCTAGATGTGATATTTTATTCCTTTGGAACGAGTGAATCTCAAAATCCAATTGGAGTTGCTTC
Found at i:92148876 original size:19 final size:19
Alignment explanation
Indices: 92148852--92148897 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
92148842 TTGGGTGCAT
92148852 GAAAAAACA-AATTTGAATA
1 GAAAAAACAGAA-TTGAATA
92148871 GAAAAAACAGAATTGAATA
1 GAAAAAACAGAATTGAATA
92148890 GAATAAAA
1 GAA-AAAA
92148898 ATACAATTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.65, C:0.04, G:0.13, T:0.17
Consensus pattern (19 bp):
GAAAAAACAGAATTGAATA
Found at i:92150089 original size:31 final size:31
Alignment explanation
Indices: 92150054--92150114 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
92150044 TAGCTCAATG
92150054 ACTTAAATAAAAACATTTGAATAGTTTAGTA
1 ACTTAAATAAAAACATTTGAATAGTTTAGTA
* * * *
92150085 ACTTAAATCAAAACTTTTTATTAGTTTAGT
1 ACTTAAATAAAAACATTTGAATAGTTTAGT
92150115 GATCAATTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (31 bp):
ACTTAAATAAAAACATTTGAATAGTTTAGTA
Found at i:92153112 original size:46 final size:46
Alignment explanation
Indices: 92153029--92153197 Score: 146
Period size: 46 Copynumber: 3.5 Consensus size: 46
92153019 TTGTACATAG
**
92153029 TCACATATCACACATCG-TAGCCATAGCCCAGCCATGGTCTTACACGAA
1 TCACATATCACAC-T-GAT-GCCATAGCCCAGATATGGTCTTACACGAA
* *
92153077 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTATACGGAA
1 TCACATATCACACTGATGCCATAGCCCAGATATGGTCTTACAC-GAA
* *
92153124 GCACGTAATCACATATCTCTGATGCCATAGCCCA-ACTATGGTCTTACAC-AGA
1 TCACAT-ATCAC--A---CTGATGCCATAGCCCAGA-TATGGTCTTACACGA-A
*
92153176 TCACATATCACATTGATGCCAT
1 TCACATATCACACTGATGCCAT
92153198 GGTCCAACCA
Statistics
Matches: 100, Mismatches: 11, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
46 32 0.32
47 9 0.09
48 18 0.18
49 1 0.01
50 1 0.01
51 6 0.06
52 6 0.06
53 27 0.27
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (46 bp):
TCACATATCACACTGATGCCATAGCCCAGATATGGTCTTACACGAA
Found at i:92154346 original size:23 final size:21
Alignment explanation
Indices: 92154279--92154362 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
92154269 TGATCAGTAT
* *
92154279 ACGACACATAA-GTGCTTGAA
1 ACGACACACAAGGTGCCTGAA
*
92154299 ACGACACACGAGGTGCCTGAA
1 ACGACACACAAGGTGCCTGAA
92154320 ACGACACACAAGGTGCCTGAAA
1 ACGACACACAAGGTGCCTG-AA
* *
92154342 TACGACACATAAAGTGCCTGA
1 -ACGACACACAAGGTGCCTGA
92154363 TCAGTATAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
20 9 0.16
21 26 0.47
22 3 0.05
23 17 0.31
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.14
Consensus pattern (21 bp):
ACGACACACAAGGTGCCTGAA
Found at i:92154626 original size:29 final size:29
Alignment explanation
Indices: 92154548--92154627 Score: 117
Period size: 28 Copynumber: 2.8 Consensus size: 29
92154538 CACCAAAATG
* * *
92154548 TCCAACCAAAACACACCAGTATCATATAA
1 TCCATCCAAAACACACCAGAATAATATAA
*
92154577 TCC-TCCCAAACACACCAGAATAATATAA
1 TCCATCCAAAACACACCAGAATAATATAA
92154605 TCCATCCAAAACACACCAGAATA
1 TCCATCCAAAACACACCAGAATA
92154628 GCACAAAGTG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
28 24 0.53
29 21 0.47
ACGTcount: A:0.47, C:0.33, G:0.04, T:0.16
Consensus pattern (29 bp):
TCCATCCAAAACACACCAGAATAATATAA
Found at i:92162517 original size:123 final size:122
Alignment explanation
Indices: 92162258--92162769 Score: 566
Period size: 125 Copynumber: 4.1 Consensus size: 122
92162248 GGCCAAACAT
*
92162258 GAACTACCGTAGAAAAAGAGCATCCACGTGGGAGC--TTTTCAGTAATTTTACTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCA---ACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATC
* * * * * *
92162321 CTGCTTGAAGC--ATTTGGCACTGTTTTTTAGAACCGTTTTCTCAACATTATTTTTTCAA
63 CTGCTTGAAGCGTTTTTGACACTATTTTTTAGAACCGTCTTCTCAAAATTATTTTTTCAG
* * *
92162379 GAACTACTGTAGAAAAAGAGCGAACGTGGGAGCTTTTTTCAATAATTTTGCTGACAGTGCATCTT
1 GAACTACTGTAGAAAAAGAGC-AACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATCCT
92162444 GCTTGAAGCGTTTTTGACACTATTTTTTAGAACCGTCTTCTCAAAATTATTTTTTCAG
65 GCTTGAAGCGTTTTTGACACTATTTTTTAGAACCGTCTTCTCAAAATTATTTTTTCAG
* * * ** * *
92162502 GAACTACTGTAGAAAAAAAGAGTCCATGTGGGAGCTTATTTCAGTAATTTTTTTGATAGTGCATT
1 GAACTACTGTAG--AAAAAGAG-CAACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATC
* * * * * * * * *
92162567 CTACTTAAAGAGTTTTTTAAACTATTTTTCAGAACTGTCTTTTCAAAATTTTTTTTTCAG
63 CTGCTTGAAGCGTTTTTGACACTATTTTTTAGAACCGTCTTCTCAAAATTATTTTTTCAG
* * * *
92162627 GAACGACTGGAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTACTGACAATGCATC
1 GAACTACTGTAGAAAAAGA--G-CAACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATC
* * *
92162692 CTGCTTGAAGCGTTTTTGACATTATTTTTTCAGAACCGTCTTCTTAAAATTAATTTTTCTA-
63 CTGCTTGAAGCGTTTTTGACACTATTTTTT-AGAACCGTCTTCTCAAAATTATTTTTTC-AG
* *
92162753 AAACTACTGTAAAAAAA
1 GAACTACTGTAGAAAAA
92162770 TTTATTTTAA
Statistics
Matches: 325, Mismatches: 54, Indels: 19
0.82 0.14 0.05
Matches are distributed among these distances:
119 10 0.03
121 56 0.17
122 1 0.00
123 60 0.18
125 160 0.49
126 37 0.11
127 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (122 bp):
GAACTACTGTAGAAAAAGAGCAACGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATCCTG
CTTGAAGCGTTTTTGACACTATTTTTTAGAACCGTCTTCTCAAAATTATTTTTTCAG
Found at i:92162893 original size:34 final size:33
Alignment explanation
Indices: 92162850--92162940 Score: 112
Period size: 34 Copynumber: 2.7 Consensus size: 33
92162840 AAAAAAATTG
* *
92162850 AACCCTAATTTAATTAATTTTCTTGAAAACTC-TA
1 AACCATAATTTAATTAATTTT-TT-AAAACCCTTA
*
92162884 AACCATAATTTAAATAATTTATTTAAAACCCTTA
1 AACCATAATTTAATTAATTT-TTTAAAACCCTTA
*
92162918 AAACATAATTTAATTAATTTTTT
1 AACCATAATTTAATTAATTTTTT
92162941 TTAAAAAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
33 9 0.18
34 40 0.80
35 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.01, T:0.43
Consensus pattern (33 bp):
AACCATAATTTAATTAATTTTTTAAAACCCTTA
Found at i:92165469 original size:215 final size:214
Alignment explanation
Indices: 92165219--92165653 Score: 843
Period size: 215 Copynumber: 2.0 Consensus size: 214
92165209 AAAATGTAAA
92165219 ACTTTAGGGGTATCAAAATAAGATTTCATAGGTTCATTCATGTAAAGATATAATGTATAAATTTT
1 ACTTTAGGGGTATCAAAATAAGATTTCATAGGTTCATTCATGTAAAGATATAATGTATAAATTTT
*
92165284 TGATATTGATGGATTGAATGAAATAATTGAATAGATCAAGAATTGGATCAAATCAGAGATAATCG
66 TGATATTGATGGATTGAATGAAATAATTGAATAGATCAAGAATTAGATCAAATCAGAGATAATCG
92165349 AGGAAAAGAAAAAAGTTGTAGATTAGTCATTAAAGTTTTAGCTTGTTTGGTATTTTGACCAGATA
131 AGGAAAAGAAAAAAGTTGTAGATTAGTCATTAAAGTTTTAGCTTGTTTGGTATTTTGACCAGATA
92165414 AGTTCATGTGGAACTTACT
196 AGTTCATGTGGAACTTACT
92165433 ACTTTAGGGGTATCAAAAATAAGATTTCATAGGTTCATTCATGTAAAGATATAATGTATAAATTT
1 ACTTTAGGGGTATC-AAAATAAGATTTCATAGGTTCATTCATGTAAAGATATAATGTATAAATTT
92165498 TTGATATTGATGGATTGAATGAAATAATTGAATAGATCAAGAATTAGATCAAATCAGAGATAATC
65 TTGATATTGATGGATTGAATGAAATAATTGAATAGATCAAGAATTAGATCAAATCAGAGATAATC
*
92165563 GAGGAAAAGAAAAAAGTTGTAGATTAGTCCTTAAAGTTTTAGCTTGTTTGGTATTTTGACCAGAT
130 GAGGAAAAGAAAAAAGTTGTAGATTAGTCATTAAAGTTTTAGCTTGTTTGGTATTTTGACCAGAT
92165628 AAGTTCATGTGGAACTTACT
195 AAGTTCATGTGGAACTTACT
92165648 ACTTTA
1 ACTTTA
92165654 TTTTATGCTA
Statistics
Matches: 218, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
214 14 0.06
215 204 0.94
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (214 bp):
ACTTTAGGGGTATCAAAATAAGATTTCATAGGTTCATTCATGTAAAGATATAATGTATAAATTTT
TGATATTGATGGATTGAATGAAATAATTGAATAGATCAAGAATTAGATCAAATCAGAGATAATCG
AGGAAAAGAAAAAAGTTGTAGATTAGTCATTAAAGTTTTAGCTTGTTTGGTATTTTGACCAGATA
AGTTCATGTGGAACTTACT
Found at i:92167633 original size:12 final size:11
Alignment explanation
Indices: 92167595--92167649 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
92167585 AATCACTTTA
*
92167595 ATATTGAATTT
1 ATATTAAATTT
92167606 AT-TCTAATATTT
1 ATAT-TAA-ATTT
92167618 ATATTAAATTT
1 ATATTAAATTT
*
92167629 AATATTAAATCT
1 -ATATTAAATTT
92167641 -TATTAAATT
1 ATATTAAATT
92167650 AATAGAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
10 9 0.24
11 8 0.22
12 19 0.51
13 1 0.03
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (11 bp):
ATATTAAATTT
Found at i:92169370 original size:41 final size:41
Alignment explanation
Indices: 92169324--92169481 Score: 183
Period size: 41 Copynumber: 3.9 Consensus size: 41
92169314 GAAAACACTG
* *
92169324 TAAAAACTCAGCAATAGCGGCGTTTTTGGTCCAAACGCAAC
1 TAAAAACTGAGCAATAGCGGCGTTTTTAGTCCAAACGCAAC
* * * *
92169365 TAAAAACTGAGCAATAGCAGCGTTTTTGGTACAAACGCAGC
1 TAAAAACTGAGCAATAGCGGCGTTTTTAGTCCAAACGCAAC
* * * * *
92169406 TAAAAACTTAGCAATAGCGGTGTTTTTAATCCAAACACCAC
1 TAAAAACTGAGCAATAGCGGCGTTTTTAGTCCAAACGCAAC
* *
92169447 -AAAAAGTTGATCAATAGCGGCGTTTTTAGTCCAAA
1 TAAAAA-CTGAGCAATAGCGGCGTTTTTAGTCCAAA
92169482 TACCGCAAAA
Statistics
Matches: 98, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 5 0.05
41 93 0.95
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (41 bp):
TAAAAACTGAGCAATAGCGGCGTTTTTAGTCCAAACGCAAC
Found at i:92169491 original size:41 final size:41
Alignment explanation
Indices: 92169417--92169497 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
92169407 AAAAACTTAG
*
92169417 CAATAGCGGTGTTTTTAATCCAAACACCACAAAAAGTTGAT
1 CAATAGCGGCGTTTTTAATCCAAACACCACAAAAAGTTGAT
* * *
92169458 CAATAGCGGCGTTTTTAGTCCAAATACCGCAAAAAGTTGA
1 CAATAGCGGCGTTTTTAATCCAAACACCACAAAAAGTTGA
92169498 GCAGCCATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (41 bp):
CAATAGCGGCGTTTTTAATCCAAACACCACAAAAAGTTGAT
Found at i:92169588 original size:17 final size:18
Alignment explanation
Indices: 92169568--92169603 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
92169558 TTTTTTTCTT
92169568 ATTTTAGTTTGA-ATTTG
1 ATTTTAGTTTGATATTTG
*
92169585 ATTTTATTTTGATATTTG
1 ATTTTAGTTTGATATTTG
92169603 A
1 A
92169604 AACTAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (18 bp):
ATTTTAGTTTGATATTTG
Found at i:92170797 original size:165 final size:165
Alignment explanation
Indices: 92170588--92170951 Score: 446
Period size: 165 Copynumber: 2.2 Consensus size: 165
92170578 TTAGTGAGCT
* * *** ** *
92170588 TAAATGTCAAGCATTAGTGGCGCTA-GTGTAAAAGCGTTGCTAAATGTCGAGCATTAGCGGCAGT
1 TAAATGTCAAACATTAGTGGCGCTATG-GTAAAAACACCGCTAAATGTCGAGCATTAGCAACACT
* * *
92170652 ATTGGGAAAATACCGCAAATATATATGGGCATTAAGCTTGACGACGTCGTTTTATCAAAAAGGCG
65 ATTGGGAAAATACCGCAAATAAATATGGGCAGTAAGCTAGACGACGTCGTTTTATCAAAAAGGCG
*
92170717 CAAAAAAT-GTTAGCA-GCGCTACTGGGAAAACACTGC
130 -AAAAAATCATTAG-AGGCGCTACTGGGAAAACACTGC
* *
92170753 TAAATGTCAAACATTAGTGGCGCTATGGTAAAAACACCGCTAAATGTTGAGCATTAGCAACACTC
1 TAAATGTCAAACATTAGTGGCGCTATGGTAAAAACACCGCTAAATGTCGAGCATTAGCAACACTA
* * * *
92170818 TTGGGAAAATGCCGCAAGTAAATATGGGCAGTAAGCTAGATGACGTCGTTTTATCAAAAAGGCGT
66 TTGGGAAAATACCGCAAATAAATATGGGCAGTAAGCTAGACGACGTCGTTTTATCAAAAAGGCGA
* * * *
92170883 AAAAATCATTAGAGGTGCTATTGGGTAAACGCTGC
131 AAAAATCATTAGAGGCGCTACTGGGAAAACACTGC
* * * *
92170918 TAAATGTTAATCACTAGTGGCGCTATTGTAAAAA
1 TAAATGTCAAACATTAGTGGCGCTATGGTAAAAA
92170952 TGCCGCAAAA
Statistics
Matches: 170, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
164 7 0.04
165 162 0.95
166 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (165 bp):
TAAATGTCAAACATTAGTGGCGCTATGGTAAAAACACCGCTAAATGTCGAGCATTAGCAACACTA
TTGGGAAAATACCGCAAATAAATATGGGCAGTAAGCTAGACGACGTCGTTTTATCAAAAAGGCGA
AAAAATCATTAGAGGCGCTACTGGGAAAACACTGC
Found at i:92178804 original size:59 final size:61
Alignment explanation
Indices: 92178685--92178812 Score: 158
Period size: 59 Copynumber: 2.1 Consensus size: 61
92178675 TTAATATAAC
* *
92178685 ATTTGATATATGAACTTGACAATTTTTTCCTAATTTGGTACTTATAACTTTTTTTAGCCCA
1 ATTTGGTATATGAACTTGACAATTTTTTCCTAATTTGGTACTTATAACTTTCTTTAGCCCA
* *
92178746 ATTTGGTATCTGAACTTGAC-ATTTTTT-TTAATTTGGTA-TCTA-AAC-TTCTTTAGGGCCCA
1 ATTTGGTATATGAACTTGACAATTTTTTCCTAATTTGGTACT-TATAACTTTCTTTA--GCCCA
92178805 ATTTGGTA
1 ATTTGGTA
92178813 CCTAAGATTT
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
57 6 0.10
58 4 0.07
59 25 0.42
60 7 0.12
61 18 0.30
ACGTcount: A:0.26, C:0.14, G:0.13, T:0.47
Consensus pattern (61 bp):
ATTTGGTATATGAACTTGACAATTTTTTCCTAATTTGGTACTTATAACTTTCTTTAGCCCA
Found at i:92179072 original size:24 final size:23
Alignment explanation
Indices: 92179034--92179079 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
92179024 TTTCAACTAA
92179034 TAAAATAATTAAATAAATAAAAC
1 TAAAATAATTAAATAAATAAAAC
* *
92179057 TAAAAGTAATTGAATATATAAAA
1 TAAAA-TAATTAAATAAATAAAA
92179080 TACAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.28
Consensus pattern (23 bp):
TAAAATAATTAAATAAATAAAAC
Done.