Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 288 of 325
Found at i:92180316 original size:11 final size:11
Alignment explanation
Indices: 92180300--92180339 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
92180290 GTTTGCTCCG
92180300 TATTTTGCTAC
1 TATTTTGCTAC
* *
92180311 TATTTTACTAT
1 TATTTTGCTAC
*
92180322 TATGTTGCTAC
1 TATTTTGCTAC
92180333 TATTTTG
1 TATTTTG
92180340 ATGTTATTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.12, G:0.10, T:0.57
Consensus pattern (11 bp):
TATTTTGCTAC
Found at i:92180414 original size:30 final size:30
Alignment explanation
Indices: 92180379--92180437 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
92180369 TATTTTATTG
92180379 TTAATTTTGTTATTATTTTAAAGACATTTA
1 TTAATTTTGTTATTATTTTAAAGACATTTA
*
92180409 TTAATTTTGTTATTATTTTAGAGACATTT
1 TTAATTTTGTTATTATTTTAAAGACATTT
92180438 GCTTGTTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTA
Found at i:92180842 original size:13 final size:13
Alignment explanation
Indices: 92180823--92180886 Score: 76
Period size: 13 Copynumber: 4.9 Consensus size: 13
92180813 TAAACCAAAT
92180823 TTTTCAAAAACAC
1 TTTTCAAAAACAC
* *
92180836 TTCTCAAAAGCAC
1 TTTTCAAAAACAC
* *
92180849 TTTTTC-ATATCAC
1 -TTTTCAAAAACAC
92180862 TTTTCAAAAACAC
1 TTTTCAAAAACAC
92180875 TTTTCAAAAACA
1 TTTTCAAAAACA
92180887 TTACCAAACT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
12 5 0.12
13 33 0.79
14 4 0.10
ACGTcount: A:0.41, C:0.23, G:0.02, T:0.34
Consensus pattern (13 bp):
TTTTCAAAAACAC
Found at i:92180960 original size:3 final size:3
Alignment explanation
Indices: 92180952--92180981 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
92180942 ATGATTGCAA
92180952 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
92180982 TTTTTGTAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:92191539 original size:2 final size:2
Alignment explanation
Indices: 92191532--92191568 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
92191522 ACTAAAGTTT
92191532 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
92191569 TATCATTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:92195406 original size:31 final size:31
Alignment explanation
Indices: 92195368--92195430 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
92195358 ATGGGTAAAA
* *
92195368 TATATAAATGGCCATCCGTCTATGTTTGCAT
1 TATATAAATGGCCATCCATCTATGTCTGCAT
92195399 TATATAAATGGCCATCCATCTATGTCTGCAT
1 TATATAAATGGCCATCCATCTATGTCTGCAT
92195430 T
1 T
92195431 CTTGTTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (31 bp):
TATATAAATGGCCATCCATCTATGTCTGCAT
Found at i:92196840 original size:14 final size:14
Alignment explanation
Indices: 92196823--92196849 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92196813 AACATATGCA
92196823 TATATATATATTAG
1 TATATATATATTAG
92196837 TATATATATATTA
1 TATATATATATTA
92196850 ATTTTATTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (14 bp):
TATATATATATTAG
Found at i:92211088 original size:26 final size:26
Alignment explanation
Indices: 92211057--92211164 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
92211047 TGAAATTCCC
92211057 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
92211083 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
92211109 ATCATAGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
92211135 ATCATGGAACATTTACCT-AACCAATT
1 ATCATGGAACATTTACCTAAACC-ATT
92211161 ATCA
1 ATCA
92211165 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
25 3 0.04
26 71 0.96
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:92211516 original size:14 final size:16
Alignment explanation
Indices: 92211497--92211537 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
92211487 GGGGCGTTAC
92211497 AATTTTATATT-A-AT
1 AATTTTATATTAACAT
* *
92211511 ATTTTTTTATTAACAT
1 AATTTTATATTAACAT
92211527 AATTTTATATT
1 AATTTTATATT
92211538 CAAGATTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 11 0.52
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (16 bp):
AATTTTATATTAACAT
Found at i:92211606 original size:13 final size:13
Alignment explanation
Indices: 92211572--92211606 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
92211562 ATAAAATAAT
*
92211572 TATAATTATTTTA
1 TATATTTATTTTA
92211585 TATTATTTATTTTA
1 TA-TATTTATTTTA
92211599 TATATTTA
1 TATATTTA
92211607 AAAAATATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TATATTTATTTTA
Found at i:92211968 original size:17 final size:19
Alignment explanation
Indices: 92211946--92211989 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
92211936 AATCATTATC
*
92211946 ATATTTA-AAAT-AAAATT
1 ATATTTATAAATAAAAAGT
*
92211963 ATATTTATATATAAAAAGT
1 ATATTTATAAATAAAAAGT
92211982 ATATTTAT
1 ATATTTAT
92211990 TTAATTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 7 0.30
18 3 0.13
19 13 0.57
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATATTTATAAATAAAAAGT
Found at i:92212766 original size:31 final size:31
Alignment explanation
Indices: 92212731--92212802 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 31
92212721 CTAACCTTTA
*
92212731 AAATTCAAAAAATATAAAGAA-TAAAATTAAC
1 AAATTTAAAAAATA-AAAGAACTAAAATTAAC
*
92212762 AAATTTAAAAAATAAATGAACTAAAATTAAC
1 AAATTTAAAAAATAAAAGAACTAAAATTAAC
*
92212793 CAATTTAAAA
1 AAATTTAAAA
92212803 TAGAGGGACT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 5 0.14
31 32 0.86
ACGTcount: A:0.65, C:0.07, G:0.03, T:0.25
Consensus pattern (31 bp):
AAATTTAAAAAATAAAAGAACTAAAATTAAC
Found at i:92212770 original size:22 final size:23
Alignment explanation
Indices: 92212729--92212777 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
92212719 ATCTAACCTT
*
92212729 TAAAATTCAAAAAATATAAAGAA
1 TAAAATTCAAAAAATATAAAAAA
* *
92212752 TAAAATT-AACAAATTTAAAAAA
1 TAAAATTCAAAAAATATAAAAAA
92212774 TAAA
1 TAAA
92212778 TGAACTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (23 bp):
TAAAATTCAAAAAATATAAAAAA
Found at i:92212791 original size:22 final size:22
Alignment explanation
Indices: 92212739--92212791 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
92212729 TAAAATTCAA
* *
92212739 AAAATATAAAGAATAAAATTAAC
1 AAAAT-TAAAAAATAAAATGAAC
*
92212762 AAATTTAAAAAAT-AAATGAAC
1 AAAATTAAAAAATAAAATGAAC
92212783 TAAAATTAA
1 -AAAATTAA
92212792 CCAATTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 7 0.28
22 14 0.56
23 4 0.16
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.25
Consensus pattern (22 bp):
AAAATTAAAAAATAAAATGAAC
Found at i:92220919 original size:22 final size:20
Alignment explanation
Indices: 92220893--92220947 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
92220883 ATTATCTATT
92220893 TATTTAATATCATTTTACTAA
1 TATTTAATATCATTTT-CTAA
* * * *
92220914 TAATTTAATCTAATTTTTTTA
1 T-ATTTAATATCATTTTCTAA
92220935 TATTTAATATCAT
1 TATTTAATATCAT
92220948 ACTTTTTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 10 0.37
21 4 0.15
22 13 0.48
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTTAATATCATTTTCTAA
Found at i:92221423 original size:12 final size:11
Alignment explanation
Indices: 92221396--92221422 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
92221386 AATTTTTTAA
92221396 ATTTTAAAAAT
1 ATTTTAAAAAT
92221407 ATTTTAAAAAT
1 ATTTTAAAAAT
92221418 ATTTT
1 ATTTT
92221423 TTTATATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
ATTTTAAAAAT
Found at i:92230835 original size:2 final size:2
Alignment explanation
Indices: 92230830--92230862 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
92230820 TGCATAGTGG
*
92230830 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92230863 AGTTCATGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:92241731 original size:54 final size:51
Alignment explanation
Indices: 92241672--92241789 Score: 193
Period size: 51 Copynumber: 2.3 Consensus size: 51
92241662 TCCAGTTCCA
92241672 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCT-TCT
1 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCT-T
*
92241723 GCACCACCACCCAAGGGTCCCACTCCTCTGTATAAGCCCCCAAGTTCTCTT
1 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCTT
* *
92241774 GCTCCACCACCTAAGG
1 GCACCACCACCCAAGG
92241790 CAGCCACTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
51 62 0.98
52 1 0.02
ACGTcount: A:0.23, C:0.43, G:0.14, T:0.19
Consensus pattern (51 bp):
GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCTT
Found at i:92241808 original size:51 final size:51
Alignment explanation
Indices: 92241672--92241815 Score: 157
Period size: 51 Copynumber: 2.8 Consensus size: 51
92241662 TCCAGTTCCA
** * *
92241672 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTTCT
1 GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTCT
** *
92241723 GCACCACCACCCAAGGGTCCCACTCCTCTGTATAAGCCCCCAAGTTC-TCTT
1 GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTC-T
* * * *
92241774 GCTCCACCACCTAAGGCAGCCACTCCCCCT-TATAAACCCCCA
1 GCACCACCACCCAAGGCACCCACT-CCCCTGTATAAGCCCCCA
92241816 GCTCCTGCAC
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
50 2 0.02
51 77 0.93
52 4 0.05
ACGTcount: A:0.24, C:0.45, G:0.12, T:0.19
Consensus pattern (51 bp):
GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTCT
Found at i:92245423 original size:10 final size:10
Alignment explanation
Indices: 92245408--92245441 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
92245398 ACGTGAGCCA
92245408 TTTCTATCTG
1 TTTCTATCTG
92245418 TTTCTATCTG
1 TTTCTATCTG
92245428 TTTTCTATCTG
1 -TTTCTATCTG
92245439 TTT
1 TTT
92245442 GAGGAACCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (10 bp):
TTTCTATCTG
Found at i:92245434 original size:11 final size:11
Alignment explanation
Indices: 92245408--92245441 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
92245398 ACGTGAGCCA
92245408 TTTCTATCTG-
1 TTTCTATCTGT
92245418 TTTCTATCTGT
1 TTTCTATCTGT
92245429 TTTCTATCTGT
1 TTTCTATCTGT
92245440 TT
1 TT
92245442 GAGGAACCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (11 bp):
TTTCTATCTGT
Found at i:92247513 original size:29 final size:29
Alignment explanation
Indices: 92247480--92247549 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
92247470 CCAAATTAAA
92247480 CACCCCACTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
92247509 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
92247538 CACCCCCACTAA
1 CA-CCCCACTAA
92247550 CTCCATCACC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.03
29 27 0.75
30 8 0.22
ACGTcount: A:0.33, C:0.50, G:0.01, T:0.16
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:92247548 original size:18 final size:18
Alignment explanation
Indices: 92247525--92247560 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
92247515 ACTAAACCAT
*
92247525 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
92247543 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
92247561 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:92247965 original size:65 final size:65
Alignment explanation
Indices: 92247836--92247977 Score: 168
Period size: 64 Copynumber: 2.2 Consensus size: 65
92247826 TAACCCCTTT
* *
92247836 TTTATTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATATTT
1 TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTTTTATATTT
*
92247901 G
65 A
* * *
92247902 TTT-TTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA-TT
1 TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTTTTATATTT
92247962 A
65 A
92247963 TTTATTTATTATTAT
1 TTTATTT-TTATTAT
92247978 ATATTTATTA
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
61 5 0.07
62 16 0.24
63 11 0.16
64 20 0.30
65 12 0.18
66 3 0.04
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (65 bp):
TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTTTTATATTTA
Found at i:92247974 original size:19 final size:18
Alignment explanation
Indices: 92247950--92247986 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
92247940 TTATGTTTCA
92247950 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
92247969 TATTATTATATATTTATT
1 TATTATTATATATTTATT
92247987 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:92247998 original size:17 final size:14
Alignment explanation
Indices: 92247958--92247988 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
92247948 CATATTATTA
*
92247958 TATTATTTATTTAT
1 TATTATATATTTAT
92247972 TATTATATATTTAT
1 TATTATATATTTAT
92247986 TAT
1 TAT
92247989 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:92248677 original size:125 final size:126
Alignment explanation
Indices: 92248454--92248692 Score: 426
Period size: 125 Copynumber: 1.9 Consensus size: 126
92248444 ATCTTCTCTC
*
92248454 AAAAATTTTCAAAATAAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGT
1 AAAAATTTTCAAAATAAAAGGAAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGT
*
92248519 ACTGGGTTTTGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCTGTTCACTTT
66 ACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCTGTTCACTTT
* *
92248580 AAAAATTTTCAAAAT-AAAGGAAATGTTTGGTATTTAAAGAATTCGAAGAATCGTGCCCTAATGT
1 AAAAATTTTCAAAATAAAAGGAAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGT
*
92248644 ACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
92248693 AGGCTAAAAC
Statistics
Matches: 108, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
125 93 0.86
126 15 0.14
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (126 bp):
AAAAATTTTCAAAATAAAAGGAAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGT
ACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCTGTTCACTTT
Found at i:92259376 original size:135 final size:133
Alignment explanation
Indices: 92258720--92259565 Score: 1133
Period size: 133 Copynumber: 6.3 Consensus size: 133
92258710 GATTACAGAT
* * *
92258720 ATCATAAGTCTTATCTTCACTGAGCAGGAGTGCAGCAGGCTAAATACCAGATCTTATTTTCACTG
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * * *
92258785 AGCAAGAGTGAAGCAGATCGAATTTTAGAGAATCTTATCTTCACGTACTGGCAATGGAGCATATT
66 AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACTGGCAATGGAGCAGATT
92258850 CCA
131 CCA
* *
92258853 ATCATAAGCCTTATCTTCACTGAGCAGGAGTAGAGCAGGCTAAATACTAGATCTTATCTTCACTG
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * *
92258918 AGCAGGAGTCAAGCAGATCGAATTTTGGAGAATCTTAGCTCCACGTACTGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACTGGCAATGGAGCAGATT
92258983 CCA
131 CCA
* *
92258986 ATCATAAGCCTTATCTTCACAGAGTAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * * *
92259051 AGCAGAAGTGAAGCAGATTGAATTTTGGAGAATCTTAGCTCCACGTACTGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACTGGCAATGGAGCAGATT
92259116 CCA
131 CCA
*
92259119 ATCATAAGCCTTATCTTCACTGAACAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * *
92259184 AGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACTGGCAATGGAGCAGATT
92259249 CCA
131 CCA
* * **
92259252 ATCATTAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATACCAGATCTTATCTTCGG
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AA-ATACCAGATCTTATCTTCAC
* * * * *
92259317 TAAGCAGGAGCGGAA-CAGATCAAATTTTGGTGAATCTTATCTCCATGTA-TCGGCAATGGAGCA
64 TGAGCAGGAG-TGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACT-GGCAATGGAGCA
* *
92259380 GGTTTCA
127 GATTCCA
** * * * ** * * *
92259387 GCCACCAA-CTTTATTTTTTCTGAGCAGGAATGGACCAGGCTAAATATACCAGATCTTATTTTCA
1 ATCA-TAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AA-ATACCAGATCTTATCTTCA
* *
92259451 TTGAGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCAATGGAGCAG
63 CTGAGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACTGGCAATGGAGCAG
92259516 ATTCCA
128 ATTCCA
* * * * * *
92259522 ATCATCAGCTTTATCTTTACTAAGCAGTAG-GGTAACAGGCTAAA
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGG-AGCAGGCTAAA
92259566 ATTTATAGAT
Statistics
Matches: 634, Mismatches: 70, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
133 411 0.65
134 10 0.02
135 209 0.33
136 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (133 bp):
ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACTGGCAATGGAGCAGATT
CCA
Found at i:92259846 original size:85 final size:85
Alignment explanation
Indices: 92259541--92259830 Score: 476
Period size: 85 Copynumber: 3.4 Consensus size: 85
92259531 TTTATCTTTA
* * *
92259541 CTAAGCAGTAGGGTAACAGGCTAAAATTTATAGATCCTGGCTCTCTGAGCAGTGGTGGAGCAGGT
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
92259606 CGAAGA-TCCGCCTTAACCCC
66 CGAAGACT-CGCCTTAACCCC
* * * *
92259626 CTAAGCAGTAGGGTAACAAGCTAAAATTTATAGATCCTGGCTCGCCGAGCAGTGGTGGAGCAGGT
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
* *
92259691 CAAATACTCGCCTTAACCCC
66 CGAAGACTCGCCTTAACCCC
92259711 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
92259776 CGAAGACTCGCCTTAACCCC
66 CGAAGACTCGCCTTAACCCC
92259796 CTAAGCAGTAAGGTAACAGGCTAAAA-TTACAGATC
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATC
92259831 TTATCTTCGT
Statistics
Matches: 193, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
84 9 0.05
85 183 0.95
86 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (85 bp):
CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
CGAAGACTCGCCTTAACCCC
Found at i:92260137 original size:18 final size:18
Alignment explanation
Indices: 92260114--92260149 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
92260104 ATTAAACCAT
*
92260114 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
92260132 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
92260150 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:92260553 original size:63 final size:62
Alignment explanation
Indices: 92260426--92260563 Score: 160
Period size: 62 Copynumber: 2.3 Consensus size: 62
92260416 TAACCCTTTT
* *
92260426 TTTA-TTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATA
1 TTTATTTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTTTTATA
* * * *
92260488 TTTGTTTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA
1 TTTATTTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTTTTATA
92260548 -TTATTTATTTATTATT
1 TTTATTT-TTTATTATT
92260564 ATATATTTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
59 5 0.08
60 22 0.33
61 4 0.06
62 23 0.35
63 12 0.18
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (62 bp):
TTTATTTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTTTTATA
Found at i:92260562 original size:19 final size:18
Alignment explanation
Indices: 92260538--92260574 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
92260528 TTATGTTTCA
92260538 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
92260557 TATTATTATATATTTATT
1 TATTATTATATATTTATT
92260575 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:92260586 original size:17 final size:14
Alignment explanation
Indices: 92260546--92260576 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
92260536 CATATTATTA
*
92260546 TATTATTTATTTAT
1 TATTATATATTTAT
92260560 TATTATATATTTAT
1 TATTATATATTTAT
92260574 TAT
1 TAT
92260577 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:92261266 original size:126 final size:127
Alignment explanation
Indices: 92261036--92261273 Score: 424
Period size: 126 Copynumber: 1.9 Consensus size: 127
92261026 CATTGATCTT
*
92261036 CTCTCAAAAATTTTCAAAATAAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCT
1 CTCTAAAAAATTTTCAAAATAAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCT
**
92261101 AACGTACTGGGTTTTGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 AACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
92261163 CTCTAAAAAATTTTCAAAAT-AAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCT
1 CTCTAAAAAATTTTCAAAATAAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCT
* *
92261227 AACGTACTGGGTTTCACTTTTTTTGTTTGTTTTGAATATTCGAATAT
66 AACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATAT
92261274 TCTATTAAGG
Statistics
Matches: 106, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
126 87 0.82
127 19 0.18
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (127 bp):
CTCTAAAAAATTTTCAAAATAAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCT
AACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:92262188 original size:30 final size:30
Alignment explanation
Indices: 92262152--92262211 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92262142 TATTTTATTA
*
92262152 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
92262182 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
92262212 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:92262238 original size:36 final size:36
Alignment explanation
Indices: 92262196--92262265 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
92262186 TTTTATTATT
92262196 ATTTTAGAGGTATTTGCTTGTTAAGTTGCATCTAGC
1 ATTTTAGAGGTATTTGCTTGTTAAGTTGCATCTAGC
92262232 ATTTTAGAGGTATTTGCTTGTTAAGTTGCATCTA
1 ATTTTAGAGGTATTTGCTTGTTAAGTTGCATCTA
92262266 TCTTAGTGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.23, C:0.10, G:0.21, T:0.46
Consensus pattern (36 bp):
ATTTTAGAGGTATTTGCTTGTTAAGTTGCATCTAGC
Found at i:92262681 original size:23 final size:24
Alignment explanation
Indices: 92262650--92262695 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
92262640 TTTATTATTA
*
92262650 TATTTTTATATTTTTTT-AAAATT
1 TATTCTTATATTTTTTTGAAAATT
92262673 TATTCTTATATTTTTTTGAAAAT
1 TATTCTTATATTTTTTTGAAAAT
92262696 ATTTATGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (24 bp):
TATTCTTATATTTTTTTGAAAATT
Found at i:92262701 original size:20 final size:19
Alignment explanation
Indices: 92262654--92262729 Score: 64
Period size: 20 Copynumber: 3.7 Consensus size: 19
92262644 TTATTATATT
92262654 TTTATATTTTTTTAAAATTTA
1 TTTATATTTTTTTAAAA--TA
92262675 TTCTTATATTTTTTTGAAAATA
1 -T-TTATATTTTTTT-AAAATA
* * *
92262697 TTTATGTATTTTTATATATA
1 TTTATATTTTTTTA-AAATA
92262717 TTT-TATTTTTTTA
1 TTTATATTTTTTTA
92262730 GACTAGGATC
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
19 9 0.20
20 17 0.37
21 1 0.02
22 3 0.07
23 12 0.26
24 4 0.09
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTATATTTTTTTAAAATA
Found at i:92271148 original size:7 final size:7
Alignment explanation
Indices: 92271136--92271220 Score: 63
Period size: 7 Copynumber: 12.9 Consensus size: 7
92271126 ATCAAATCAT
92271136 TAAACCC
1 TAAACCC
92271143 TAAA-CC
1 TAAACCC
92271149 TAAA-CC
1 TAAACCC
**
92271155 TAAACTT
1 TAAACCC
*
92271162 TGAACCC
1 TAAACCC
*
92271169 CAAACCC
1 TAAACCC
92271176 -AAA-CC
1 TAAACCC
92271181 TAAACCC
1 TAAACCC
* *
92271188 AAAACCT
1 TAAACCC
*
92271195 TAAATCC
1 TAAACCC
*
92271202 TAAA-TC
1 TAAACCC
92271208 TAAACCC
1 TAAACCC
92271215 TAAACC
1 TAAACC
92271221 TCAAGGTTTG
Statistics
Matches: 60, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
5 2 0.03
6 23 0.38
7 35 0.58
ACGTcount: A:0.46, C:0.35, G:0.01, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:92271152 original size:6 final size:6
Alignment explanation
Indices: 92271136--92271221 Score: 55
Period size: 6 Copynumber: 13.2 Consensus size: 6
92271126 ATCAAATCAT
* * * *
92271136 TAAACCC TAAACC TAAACC TAAACTT TGAACCC CAAACC CAAACC TAAACCC
1 TAAA-CC TAAACC TAAACC TAAAC-C T-AAACC TAAACC TAAACC TAAA-CC
* *
92271188 AAAACC TTAAATCC TAAATC TAAACCC TAAACC T
1 TAAACC -TAAA-CC TAAACC TAAA-CC TAAACC T
92271222 CAAGGTTTGG
Statistics
Matches: 63, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
6 36 0.57
7 22 0.35
8 5 0.08
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.19
Consensus pattern (6 bp):
TAAACC
Found at i:92271154 original size:13 final size:13
Alignment explanation
Indices: 92271136--92271221 Score: 68
Period size: 13 Copynumber: 6.5 Consensus size: 13
92271126 ATCAAATCAT
92271136 TAAACCCTAAA-CC
1 TAAA-CCTAAACCC
**
92271149 TAAACCTAAACTT
1 TAAACCTAAACCC
* *
92271162 TGAACCCCAAACCC
1 T-AAACCTAAACCC
92271176 -AAACCTAAACCC
1 TAAACCTAAACCC
* *
92271188 AAAACCTTAAATCC
1 TAAACC-TAAACCC
*
92271202 TAAATCTAAACCC
1 TAAACCTAAACCC
92271215 TAAACCT
1 TAAACCT
92271222 CAAGGTTTGG
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
12 16 0.29
13 22 0.39
14 18 0.32
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.19
Consensus pattern (13 bp):
TAAACCTAAACCC
Found at i:92271278 original size:21 final size:21
Alignment explanation
Indices: 92271240--92271284 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
92271230 GGGATTCAGA
*
92271240 GTTTAAGGTTAAACGTTTAAG
1 GTTTAAGGCTAAACGTTTAAG
* * *
92271261 GTTTAAGGCTCAAGGTTTGAG
1 GTTTAAGGCTAAACGTTTAAG
92271282 GTT
1 GTT
92271285 AGAGGTTCTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.38
Consensus pattern (21 bp):
GTTTAAGGCTAAACGTTTAAG
Found at i:92272740 original size:17 final size:17
Alignment explanation
Indices: 92272708--92272760 Score: 72
Period size: 18 Copynumber: 3.1 Consensus size: 17
92272698 TTTTAGTCCT
92272708 AATTATAAAAATATTAAA
1 AATTATAAAAA-ATTAAA
92272726 AATTATAAAAAATT-AA
1 AATTATAAAAAATTAAA
*
92272742 CATTATAAAAAAATTAAA
1 AATTAT-AAAAAATTAAA
92272760 A
1 A
92272761 TTTTTCAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 7 0.23
17 11 0.35
18 13 0.42
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (17 bp):
AATTATAAAAAATTAAA
Found at i:92272937 original size:20 final size:20
Alignment explanation
Indices: 92272914--92272951 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
92272904 TATTTACTTA
* *
92272914 ATTTATTTTTTAAAATTTAT
1 ATTTAGTTTTAAAAATTTAT
92272934 ATTTAGTTTTAAAAATTT
1 ATTTAGTTTTAAAAATTT
92272952 TAAGACTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (20 bp):
ATTTAGTTTTAAAAATTTAT
Found at i:92277330 original size:60 final size:59
Alignment explanation
Indices: 92277229--92277345 Score: 171
Period size: 60 Copynumber: 2.0 Consensus size: 59
92277219 GGGTGAGATG
* *
92277229 TTAATGTAAATCTGTATTTTACCATGTAAATTAGGCTATAACTTAAGATTTTAACTATT
1 TTAATGTAAATCTGTATTTTACCATGCAAATTAAGCTATAACTTAAGATTTTAACTATT
* * * *
92277288 TTAATGTAAATTTGTATTTTTAGCATGCAAATTAAGCTATAACTTAGGATTTTGACTA
1 TTAATGTAAATCTGTA-TTTTACCATGCAAATTAAGCTATAACTTAAGATTTTAACTA
92277346 GTTAGTTTCC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
59 15 0.29
60 36 0.71
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (59 bp):
TTAATGTAAATCTGTATTTTACCATGCAAATTAAGCTATAACTTAAGATTTTAACTATT
Found at i:92285336 original size:32 final size:31
Alignment explanation
Indices: 92285300--92285365 Score: 98
Period size: 30 Copynumber: 2.1 Consensus size: 31
92285290 TTATTTCCCT
92285300 TTCAAATTCACCTTATTTTTCATTTGAGAATA
1 TTCAAATT-ACCTTATTTTTCATTTGAGAATA
* *
92285332 TTC-AATTTCCTTATTTTTCATTTGATAATA
1 TTCAAATTACCTTATTTTTCATTTGAGAATA
92285362 TTCA
1 TTCA
92285366 GTTTCTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 24 0.77
31 4 0.13
32 3 0.10
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.52
Consensus pattern (31 bp):
TTCAAATTACCTTATTTTTCATTTGAGAATA
Found at i:92285344 original size:30 final size:30
Alignment explanation
Indices: 92285310--92285375 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
92285300 TTCAAATTCA
92285310 CCTTATTTTTCATTTGAGAATATTCAATTT
1 CCTTATTTTTCATTTGAGAATATTCAATTT
* *
92285340 CCTTATTTTTCATTTGATAATATTCAGTTT
1 CCTTATTTTTCATTTGAGAATATTCAATTT
*
92285370 CTTTAT
1 CCTTAT
92285376 CAAAAACAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.24, C:0.14, G:0.06, T:0.56
Consensus pattern (30 bp):
CCTTATTTTTCATTTGAGAATATTCAATTT
Found at i:92300675 original size:6 final size:6
Alignment explanation
Indices: 92300664--92300692 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
92300654 GTTAGCTACG
92300664 AAAATT AAAATT AAAATT AAAATT AAAAT
1 AAAATT AAAATT AAAATT AAAATT AAAAT
92300693 ATTTTACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:92301249 original size:5 final size:5
Alignment explanation
Indices: 92301223--92301307 Score: 75
Period size: 5 Copynumber: 16.4 Consensus size: 5
92301213 TCTTTTGTTT
92301223 TATATA TATATA TATAAA TATAA TATAA TAT-A -ATAA TATAA TATAA
1 TATA-A TATA-A TAT-AA TATAA TATAA TATAA TATAA TATAA TATAA
* * * *
92301269 TGTAA TGTTAA TATAA TAATAA AATAA TATAT TATAA TA
1 TATAA T-ATAA TATAA T-ATAA TATAA TATAA TATAA TA
92301308 AAAATCGTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
3 2 0.03
4 2 0.03
5 41 0.61
6 21 0.31
7 1 0.01
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:92301308 original size:13 final size:13
Alignment explanation
Indices: 92301224--92301307 Score: 68
Period size: 13 Copynumber: 6.2 Consensus size: 13
92301214 CTTTTGTTTT
92301224 ATATATATATATATA
1 ATATA-ATA-ATATA
92301239 A-AT-ATAATATA
1 ATATAATAATATA
92301250 ATATAATAATATA
1 ATATAATAATATA
*
92301263 ATATAATGTAATGTTA
1 ATATAA--TAAT-ATA
92301279 ATATAATAATA-A
1 ATATAATAATATA
92301291 A-ATAATATATTATA
1 ATATAATA-A-TATA
92301305 ATA
1 ATA
92301308 AAAATCGTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
11 12 0.21
12 8 0.14
13 16 0.28
14 8 0.14
15 6 0.10
16 8 0.14
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (13 bp):
ATATAATAATATA
Found at i:92301310 original size:18 final size:18
Alignment explanation
Indices: 92301224--92301310 Score: 74
Period size: 18 Copynumber: 4.9 Consensus size: 18
92301214 CTTTTGTTTT
92301224 ATATATATATATATAAATATA
1 ATATA-ATATA-ATAAA-ATA
*
92301245 ATATAATATAATAATATA
1 ATATAATATAATAAAATA
* **
92301263 ATATAATGTAAT--GTTA
1 ATATAATATAATAAAATA
92301279 ATAT-A-ATAATAAAATA
1 ATATAATATAATAAAATA
*
92301295 ATATATTATAATAAAA
1 ATATAATATAATAAAA
92301311 ATCGTAACTA
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
14 4 0.07
15 1 0.02
16 12 0.22
18 23 0.43
19 4 0.07
20 5 0.09
21 5 0.09
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
ATATAATATAATAAAATA
Found at i:92302062 original size:13 final size:13
Alignment explanation
Indices: 92302044--92302068 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92302034 TTTAATTAAT
92302044 AATTATTTATTTA
1 AATTATTTATTTA
92302057 AATTATTTATTT
1 AATTATTTATTT
92302069 GCTACTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
AATTATTTATTTA
Found at i:92312339 original size:24 final size:24
Alignment explanation
Indices: 92312292--92312340 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
92312282 TAAAATATCG
*
92312292 TGTTCCTTTTAATAAAAAATTATT
1 TGTTCCTTTTAATAAAAAAGTATT
*
92312316 TGTTCCTTTTTAAT-TAAAAGTATT
1 TGTTCC-TTTTAATAAAAAAGTATT
92312340 T
1 T
92312341 ATATTATAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.33, C:0.08, G:0.06, T:0.53
Consensus pattern (24 bp):
TGTTCCTTTTAATAAAAAAGTATT
Found at i:92313039 original size:47 final size:47
Alignment explanation
Indices: 92312935--92313069 Score: 155
Period size: 47 Copynumber: 2.9 Consensus size: 47
92312925 ATGCCATTTA
* * * *
92312935 TGGACAAGCCACCACATAGA-TGCCAATAAATGGCCACATAACATATCG
1 TGGACAAGCCACCACATA-ATTACCAAT-AACGACCACATAACACATCG
* *
92312983 TGGACAAGCCACCACATAATTTCCAATAACGACCACATAGCACATCG
1 TGGACAAGCCACCACATAATTACCAATAACGACCACATAACACATCG
* * * *
92313030 TGGATAAGCCATCACATAATTACCGATAACAACCACATAA
1 TGGACAAGCCACCACATAATTACCAATAACGACCACATAA
92313070 TCGTAGTTAA
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
47 51 0.68
48 24 0.32
ACGTcount: A:0.41, C:0.28, G:0.13, T:0.18
Consensus pattern (47 bp):
TGGACAAGCCACCACATAATTACCAATAACGACCACATAACACATCG
Found at i:92316081 original size:21 final size:22
Alignment explanation
Indices: 92316052--92316098 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
92316042 CAGAAGGAGT
*
92316052 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
92316074 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
92316095 GAGT
1 GAGT
92316099 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:92321604 original size:88 final size:88
Alignment explanation
Indices: 92321455--92321627 Score: 337
Period size: 88 Copynumber: 2.0 Consensus size: 88
92321445 GAATTACGGT
*
92321455 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAGGTGATTGAGA
1 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
92321520 TACGTTGTTGATTGTTGATTGGA
66 TACGTTGTTGATTGTTGATTGGA
92321543 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
1 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
92321608 TACGTTGTTGATTGTTGATT
66 TACGTTGTTGATTGTTGATT
92321628 TATGTCAATT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.21, C:0.10, G:0.19, T:0.50
Consensus pattern (88 bp):
TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
TACGTTGTTGATTGTTGATTGGA
Found at i:92323206 original size:17 final size:17
Alignment explanation
Indices: 92323184--92323221 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
92323174 CGTAAGCTCA
92323184 TTTGAGACTCAGTTTAG
1 TTTGAGACTCAGTTTAG
92323201 TTTGAGACTCAGTTTAG
1 TTTGAGACTCAGTTTAG
92323218 TTTG
1 TTTG
92323222 TAAATCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.11, G:0.24, T:0.45
Consensus pattern (17 bp):
TTTGAGACTCAGTTTAG
Found at i:92323650 original size:33 final size:33
Alignment explanation
Indices: 92323613--92323678 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
92323603 TAGATAAGTC
*
92323613 GTCCATAAACAAAAAAGTAGATGAAAAACAATT
1 GTCCATAAACAAAAAAGTAGATGAAAAAAAATT
92323646 GTCCATAAACAAAAAAGTAGATGAAAAAAAATT
1 GTCCATAAACAAAAAAGTAGATGAAAAAAAATT
92323679 ATGGGCATAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.59, C:0.11, G:0.12, T:0.18
Consensus pattern (33 bp):
GTCCATAAACAAAAAAGTAGATGAAAAAAAATT
Found at i:92324679 original size:14 final size:15
Alignment explanation
Indices: 92324654--92324683 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92324644 GAGTATAGTA
92324654 AAATATTTTAAAAAT
1 AAATATTTTAAAAAT
*
92324669 AAATATTTAAAAAAT
1 AAATATTTTAAAAAT
92324684 GAGAAATCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAATATTTTAAAAAT
Found at i:92329076 original size:37 final size:37
Alignment explanation
Indices: 92329026--92329100 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
92329016 CAATGGCTAG
92329026 TTATAACCTAAAGATTTACATGCCAACATTAGCTAAT
1 TTATAACCTAAAGATTTACATGCCAACATTAGCTAAT
92329063 TTATAACCTAAAGATTTACATGCCAACATTAGCTAAT
1 TTATAACCTAAAGATTTACATGCCAACATTAGCTAAT
92329100 T
1 T
92329101 AACCTATACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (37 bp):
TTATAACCTAAAGATTTACATGCCAACATTAGCTAAT
Found at i:92333015 original size:135 final size:130
Alignment explanation
Indices: 92332828--92333308 Score: 450
Period size: 131 Copynumber: 3.6 Consensus size: 130
92332818 GATACTTGAT
* * * *
92332828 AATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGC-GTTGACTCAAAATAATCGAAT
1 AATTCG-GGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCATTTG-CTCAAAATAATCGAAT
* * *
92332892 ATCCCTTCAAAATTTCACTCATATCTTTAAAAAAAAATTCTTTAAAACGAAGGCGAGGTTTGATA
64 ATCCCTTCAAAATTTCACTCAT-TCTTT---AAAAAATCCTTTAAAACGAAGGCGAGGTTCGATG
92332957 TTTGGC
125 TTTGGC
* * *
92332963 AATTCGCGGAATCGTGCCCTAAT-GTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCAAAT
1 AATTCG-GGAATCGTGCCCT-ATCGTGCTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAAT
* * * *** *
92333027 GA-CCCTTCAAAATTTCACTCGTGTCTTCT-AAAAATCCTTTAAAACGGAGGCAATACTCGGTGT
64 -ATCCCTTCAAAATTTCACTCAT-TCTT-TAAAAAATCCTTTAAAACGAAGGCGAGGTTCGATGT
*
92333090 TTGAC
126 TTGGC
* ** *
92333095 AATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCATTTGCTCAAAACAATCGAATAT
1 AATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAATAT
* * *** * * *
92333160 TCCTTTAGGTTTTCACGCATGCTTATTAAAAA-CCTTTCAAAACGAAGGCGAGGTTCGATGTTTG
66 CCCTTCAAAATTTCACTCATTCTT-TAAAAAATCCTTT-AAAACGAAGGCGAGGTTCGATGTTTG
92333224 GC
129 GC
* * * ** * *
92333226 GATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAAAATAATCGAATAT
1 AATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAATAT
* **
92333291 CTCTTCGGAATTTCACTC
66 CCCTTCAAAATTTCACTC
92333309 GTACTTTCTA
Statistics
Matches: 282, Mismatches: 56, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
130 12 0.04
131 153 0.54
132 35 0.12
135 76 0.27
136 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (130 bp):
AATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAATAT
CCCTTCAAAATTTCACTCATTCTTTAAAAAATCCTTTAAAACGAAGGCGAGGTTCGATGTTTGGC
Found at i:92350652 original size:21 final size:20
Alignment explanation
Indices: 92350620--92350677 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 20
92350610 ATTTTGTTTA
92350620 TTTATTTATTTATTTCATGT
1 TTTATTTATTTATTTCATGT
* *
92350640 TTTATTTCTTTTATTTTATGT
1 TTTATTT-ATTTATTTCATGT
92350661 TATTATATTATTATATT
1 T-TTAT-TTATT-TATT
92350678 ATTATATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 7 0.23
21 12 0.39
22 6 0.19
23 6 0.19
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTATTTATTTATTTCATGT
Found at i:92350671 original size:13 final size:13
Alignment explanation
Indices: 92350669--92350706 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
92350659 GTTATTATAT
92350669 TATTATATTATTA
1 TATTATATTATTA
*
92350682 TATTATATTATAA
1 TATTATATTATTA
*
92350695 TAATA-ATTATTA
1 TATTATATTATTA
92350707 CTTAAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 6 0.27
13 16 0.73
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:92366018 original size:5 final size:5
Alignment explanation
Indices: 92366008--92366041 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
92365998 ACAAGATGTG
92366008 AAAAT AAAAT AAAAT AAAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAA
92366042 GAACACACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:92366029 original size:16 final size:16
Alignment explanation
Indices: 92366008--92366041 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
92365998 ACAAGATGTG
92366008 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
92366024 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
92366040 AA
1 AA
92366042 GAACACACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:92368916 original size:55 final size:52
Alignment explanation
Indices: 92368829--92369075 Score: 191
Period size: 55 Copynumber: 4.7 Consensus size: 52
92368819 ATTATGGTTT
* *
92368829 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTTGTAAGGTTTCTAAGGC
1 AAGG-TACCATGTAAGACCATGCCAAGACATGGC-ATTTGTAA-GTTTCTAAGGC
* * * *
92368884 AAGGAAATCATGTAAGACCATGTCAAGACATGGCA-TTGATAAGTTACTATAAGGC
1 AAGG-TACCATGTAAGACCATGCCAAGACATGGCATTTG-TAAGTT--TCTAAGGC
* * * *
92368939 AAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGTACCATGTAAGACCATGCCAAGACATGGCATTTGTAAGTTTC-TAAGGC
* * * *
92368992 AAGGCTACCATGTAAGACCATGTCAAGACATGACAATGGTAAGTTTC-AA---
1 AAGG-TACCATGTAAGACCATGCCAAGACATGGCATTTGTAAGTTTCTAAGGC
* * * *
92369041 AAGGATACCACGTGAGACCATGACAAGTCATGGCA
1 AAGG-TACCATGTAAGACCATGCCAAGACATGGCA
92369076 ATGGTAAGGT
Statistics
Matches: 158, Mismatches: 26, Indels: 22
0.77 0.13 0.11
Matches are distributed among these distances:
49 29 0.18
52 7 0.04
53 44 0.28
54 8 0.05
55 64 0.41
56 6 0.04
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (52 bp):
AAGGTACCATGTAAGACCATGCCAAGACATGGCATTTGTAAGTTTCTAAGGC
Found at i:92369035 original size:108 final size:110
Alignment explanation
Indices: 92368839--92369036 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
92368829 AAGGATACCG
* *
92368839 TGTAAGACCATGCCAAGGCATGGCAATTTGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
* *
92368904 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
92368949 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
92369011 ATGTCAAGACATGACAATGGTAAGTT
65 ATGTCAAGACATGACAATGATAAGTT
92369037 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.58
109 6 0.08
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:92369301 original size:16 final size:16
Alignment explanation
Indices: 92369280--92369310 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92369270 ATAAATTTGA
92369280 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
92369296 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
92369311 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:92376422 original size:55 final size:52
Alignment explanation
Indices: 92376347--92376544 Score: 193
Period size: 55 Copynumber: 3.7 Consensus size: 52
92376337 GGATACCGTG
* * * *
92376347 TAAGACCATGCCAAGGCATGGCAATTGGTAATGTTTCTAAGGCAAGGAAATCATT
1 TAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGCAAGG-TACCATA
* * * * *
92376402 TAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATG
1 TAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC-AAGGTACCATA
*
92376457 TAAGACCATGCCAAGGCATGGCATTGGT--GTGTTCATAAGGCAAGGCTACCATA
1 TAAGACCATGCCAAGACATGGCATTGGTAAGT-TTC-TAAGGCAAGG-TACCATA
* *
92376510 TAAGACCATGTCAAGACATGGCAATGGTAAGTTTC
1 TAAGACCATGCCAAGACATGGCATTGGTAAGTTTC
92376545 AAAAGGATAC
Statistics
Matches: 118, Mismatches: 17, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
52 5 0.04
53 41 0.35
54 11 0.09
55 57 0.48
56 4 0.03
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (52 bp):
TAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGCAAGGTACCATA
Found at i:92376541 original size:108 final size:110
Alignment explanation
Indices: 92376345--92376542 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
92376335 AAGGATACCG
* *
92376345 TGTAAGACCATGCCAAGGCATGGCAATTGGTAATGTTTCTAAGGCAAGGAAATCATTTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAATGTTTCTAAGGCAAGGAAACCATATAAGACCA
*
92376410 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
92376455 TGTAAGACCATGCCAAGGCATGGC-ATTGGT-GTG-TTCATAAGGCAAGGCTACCATATAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAATGTTTC-TAAGGCAAGGAAACCATATAAGACC
*
92376517 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
92376543 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 6 0.08
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAATGTTTCTAAGGCAAGGAAACCATATAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:92376807 original size:16 final size:16
Alignment explanation
Indices: 92376786--92376816 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92376776 AAAAATTTGA
92376786 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
92376802 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
92376817 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:92382698 original size:23 final size:23
Alignment explanation
Indices: 92382633--92382700 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
92382623 CTGAGTTGAT
** *
92382633 AAACGGTAAGCTCCGAAGAGCTG
1 AAACGGTAAGCTCATATGAGCTG
* *
92382656 -AACAGTAAGCTTAT-TAGAGCTG
1 AAACGGTAAGCTCATAT-GAGCTG
92382678 AAACGGTAAGCTCATATGAGCTG
1 AAACGGTAAGCTCATATGAGCTG
92382701 TGGTGAGTCT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
22 16 0.46
23 18 0.51
24 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (23 bp):
AAACGGTAAGCTCATATGAGCTG
Found at i:92386138 original size:42 final size:42
Alignment explanation
Indices: 92386079--92386162 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
92386069 GCGCCATACT
92386079 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTCA
1 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTCA
92386121 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTCA
1 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTCA
92386163 GAAATATAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (42 bp):
ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTCA
Found at i:92389029 original size:47 final size:47
Alignment explanation
Indices: 92388911--92389082 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 47
92388901 GGATGGTTGA
* *
92388911 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
* *
92388959 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--AG
* * *
92389004 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
*
92389051 -C--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
92389083 TAGGGGCGGG
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
43 6 0.06
44 29 0.27
45 4 0.04
46 30 0.28
47 29 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAG
Found at i:92389346 original size:19 final size:20
Alignment explanation
Indices: 92389309--92389346 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
92389299 ATAAGGTGGT
92389309 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
92389329 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
92389347 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:92396557 original size:46 final size:45
Alignment explanation
Indices: 92396504--92396676 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
92396494 TGGTTGAGCA
*
92396504 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGC-AACG
* * * * *
92396550 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAA-CTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGAAGC-A-ACG
* * * *
92396597 TCCGAACTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAG-CAACG
*
92396643 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
92396677 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
45 5 0.05
46 62 0.61
47 34 0.33
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCAACG
Found at i:92396660 original size:93 final size:93
Alignment explanation
Indices: 92396501--92396671 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
92396491 GGATGGTTGA
* *
92396501 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCAAACGTCCCAACTCGTTGAGT
92396566 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * **
92396594 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGTGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCAAACGTCCCAA-CTCGTTGAG
92396658 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
92396672 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 4 0.06
93 66 0.94
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCAAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:92396938 original size:19 final size:20
Alignment explanation
Indices: 92396901--92396938 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
92396891 ATAAGGTGGT
92396901 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
92396921 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
92396939 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:92399635 original size:17 final size:19
Alignment explanation
Indices: 92399602--92399638 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
92399592 AGCCACTTAG
92399602 TTAGTTTTGTGATTTTATT
1 TTAGTTTTGTGATTTTATT
92399621 TTAGTTTT-T-ATTTTATT
1 TTAGTTTTGTGATTTTATT
92399638 T
1 T
92399639 CAATTTAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 1 0.06
19 8 0.44
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.73
Consensus pattern (19 bp):
TTAGTTTTGTGATTTTATT
Found at i:92404936 original size:26 final size:26
Alignment explanation
Indices: 92404907--92405014 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
92404897 TGGTACAAAT
92404907 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
92404933 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92404959 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
92404985 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92405011 TGAT
1 TGAT
92405015 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:92408658 original size:21 final size:21
Alignment explanation
Indices: 92408628--92408779 Score: 124
Period size: 21 Copynumber: 7.2 Consensus size: 21
92408618 TGTTTAGCTC
* * *
92408628 ATGAGCTTCTGTTTAACTCAT
1 ATGAGTTTCTGTTCAACTCTT
*
92408649 ATGAGTTTCTGTTCAACTCTA
1 ATGAGTTTCTGTTCAACTCTT
* * *
92408670 ATGGGTTTCCGTTCAGCTCTT
1 ATGAGTTTCTGTTCAACTCTT
* * * *
92408691 TTGAGCTTCTGTTTAACCCTT
1 ATGAGTTTCTGTTCAACTCTT
* * *
92408712 ATGGGTTTCTGTTCAGCTTTT
1 ATGAGTTTCTGTTCAACTCTT
* * *
92408733 AAGAGCTTCTGTTCAACCCTT
1 ATGAGTTTCTGTTCAACTCTT
* * *
92408754 ATGGGTTTCTGTTTAGCTCTT
1 ATGAGTTTCTGTTCAACTCTT
92408775 ATGAG
1 ATGAG
92408780 CTCCAGTTCA
Statistics
Matches: 96, Mismatches: 35, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 96 1.00
ACGTcount: A:0.17, C:0.20, G:0.19, T:0.44
Consensus pattern (21 bp):
ATGAGTTTCTGTTCAACTCTT
Found at i:92408789 original size:42 final size:42
Alignment explanation
Indices: 92408634--92408781 Score: 188
Period size: 42 Copynumber: 3.5 Consensus size: 42
92408624 GCTCATGAGC
* * * * * *
92408634 TTCTGTTTAACTCATATGAGTTTCTGTTCAACTCTAATGGGT
1 TTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGGT
* * *
92408676 TTCCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
1 TTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGGT
* *
92408718 TTCTGTTCAGCTTTTAAGAGCTTCTGTTCAACCCTTATGGGT
1 TTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGGT
*
92408760 TTCTGTTTAGCTCTTATGAGCT
1 TTCTGTTCAGCTCTTATGAGCT
92408782 CCAGTTCAGC
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.16, C:0.20, G:0.18, T:0.45
Consensus pattern (42 bp):
TTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGGT
Found at i:92409132 original size:4 final size:4
Alignment explanation
Indices: 92409123--92409147 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
92409113 AACCGGGCCT
92409123 TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T
92409148 GTTTGTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:92410595 original size:20 final size:19
Alignment explanation
Indices: 92410570--92410678 Score: 100
Period size: 20 Copynumber: 5.6 Consensus size: 19
92410560 TATTTTTAAA
92410570 TTATATATTATATGATTA-T
1 TTATATATTATAT-ATTATT
92410589 TT-TATATTACTCATATTATT
1 TTATATATTA-T-ATATTATT
92410609 TATATATATTATATATTATT
1 T-TATATATTATATATTATT
* * *
92410629 TTCACATA-TATACTTTTATA
1 TT-ATATATTATA-TATTATT
92410649 TTATATATTATAT-TTATT
1 TTATATATTATATATTATT
92410667 TTATATTATTAT
1 TTATA-TATTAT
92410679 GTCATTTTAT
Statistics
Matches: 76, Mismatches: 5, Indels: 18
0.77 0.05 0.18
Matches are distributed among these distances:
18 16 0.21
19 23 0.30
20 28 0.37
21 2 0.03
22 7 0.09
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.60
Consensus pattern (19 bp):
TTATATATTATATATTATT
Found at i:92410637 original size:22 final size:22
Alignment explanation
Indices: 92410591--92410639 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
92410581 ATGATTATTT
*
92410591 TATATTACTCATATTATTTATA
1 TATATTACTCATATTATTTACA
92410613 TATATTA-T-ATATTATTTTCACA
1 TATATTACTCATATTA-TTT-ACA
92410635 TATAT
1 TATAT
92410640 ACTTTTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 6 0.25
21 4 0.17
22 14 0.58
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (22 bp):
TATATTACTCATATTATTTACA
Found at i:92410688 original size:23 final size:23
Alignment explanation
Indices: 92410553--92410678 Score: 62
Period size: 25 Copynumber: 5.2 Consensus size: 23
92410543 GCTATTTGCT
* *
92410553 TTATTTTTATTTTTAAATTATATA
1 TTATATTTA-TTTTATATTATATA
92410577 TTATATGATTATTTTATATTACTCATA
1 TTATAT--TTATTTTATATTA-T-ATA
*
92410604 -T-TATTTA-TATATATTATATA
1 TTATATTTATTTTATATTATATA
* * *
92410624 TTAT-TTTCACATATATACTTTTATA
1 TTATATTT-A-TTTTATA-TTATATA
*
92410649 TTATATATTATATTTATTTTATATTA
1 TTATAT-TTAT-TTTATATTATA-TA
92410675 TTAT
1 TTAT
92410679 GTCATTTTAT
Statistics
Matches: 80, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
20 3 0.04
21 5 0.06
22 10 0.12
23 3 0.04
24 11 0.14
25 26 0.32
26 17 0.21
27 5 0.06
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (23 bp):
TTATATTTATTTTATATTATATA
Found at i:92410688 original size:77 final size:78
Alignment explanation
Indices: 92410563--92410714 Score: 186
Period size: 77 Copynumber: 1.9 Consensus size: 78
92410553 TTATTTTTAT
* *
92410563 TTTTAAATTATATATTATATGATTATTTTATATTACTCATATTATTTATATATATTATATATTAT
1 TTTTAAATTATATATTATAT-ATTATTTTATATTACTCATATCATTTATA-ATATTAAATATT-T
92410628 TT-TC-ACATATATAC
63 TTATCTACATATATAC
* * * *
92410642 TTTTATATTATATATTATAT-TTATTTTATATTA-TTATGTCATTTTATACTATTAAATATTTTT
1 TTTTAAATTATATATTATATATTATTTTATATTACTCATATCA-TTTATAATATTAAATATTTTT
92410705 ATCTACATAT
65 ATCTACATAT
92410715 TGTTATCATT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
75 3 0.05
76 17 0.27
77 25 0.39
79 19 0.30
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.58
Consensus pattern (78 bp):
TTTTAAATTATATATTATATATTATTTTATATTACTCATATCATTTATAATATTAAATATTTTTA
TCTACATATATAC
Found at i:92421951 original size:3 final size:3
Alignment explanation
Indices: 92421943--92421971 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
92421933 TGAGATTTAA
92421943 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
92421972 ATGGAGAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:92423201 original size:205 final size:205
Alignment explanation
Indices: 92422842--92423425 Score: 954
Period size: 205 Copynumber: 2.8 Consensus size: 205
92422832 TAGGCCGCAG
*
92422842 CATAGCAGATCTCACCTTCAGATGTTTATACTGAAGGAGATCTAAGATGATTTGGCATCCTTGTG
1 CATAGCAGATCTCACCTTCAGATGTTTATACTGAAGGAGATCCAAGATGATTTGGCATCCTTGTG
* *
92422907 CTTACAATGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAAACT
66 CTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCT
* *
92422972 AAGATGATTTGGCATCTTTGTATTGTCAGAGATCAAATCGAAGTCTGGCATCTCCACTTCGACGG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGG
92423037 GGAGCAGATA
196 GGAGCAGATA
*
92423047 CATAGCAGATCTCACATTCAGATGTTTATACTGAAGGAGATCCAAGATGATTTGGCATCCTTGTG
1 CATAGCAGATCTCACCTTCAGATGTTTATACTGAAGGAGATCCAAGATGATTTGGCATCCTTGTG
* *
92423112 CTTACAAGGAGCGAATCGAAGACATAACTGATTTGGCGTTCACGTGTTTACGATGAAGCAAATCT
66 CTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCT
*
92423177 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGATGG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGG
*
92423242 GGAGCGGATA
196 GGAGCAGATA
* * * * * * * *
92423252 CATAGTAGATTTCACCTTCAAATAATTT-CACTGAAGAAAGATCCAAAATGATTTGGCATTCTTG
1 CATAGCAGATCTCACCTTCAGAT-GTTTATACTGAAG-GAGATCCAAGATGATTTGGCATCCTTG
* * *
92423316 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAAT
64 TGCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAAT
92423381 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
129 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
92423426 AAGCAGATTT
Statistics
Matches: 353, Mismatches: 24, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
205 221 0.63
206 132 0.37
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
CATAGCAGATCTCACCTTCAGATGTTTATACTGAAGGAGATCCAAGATGATTTGGCATCCTTGTG
CTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCT
AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGG
GGAGCAGATA
Found at i:92425074 original size:7 final size:7
Alignment explanation
Indices: 92425055--92425170 Score: 68
Period size: 7 Copynumber: 16.6 Consensus size: 7
92425045 TATTTTTTAT
*
92425055 TTATAAA
1 TTATATA
92425062 TTATATA
1 TTATATA
92425069 TTATATGA
1 TTATAT-A
92425077 TTATTTTATA
1 TTA---TATA
92425087 TTACTCATA
1 TTA-T-ATA
*
92425096 TTATTTA
1 TTATATA
92425103 -TATATA
1 TTATATA
92425109 TTATATA
1 TTATATA
92425116 TTAT-T-
1 TTATATA
*
92425121 TTCACATA
1 TT-ATATA
92425129 -TATA-A
1 TTATATA
*
92425134 TTTTATA
1 TTATATA
92425141 TTATATA
1 TTATATA
92425148 TTATA-A
1 TTATATA
92425154 TTAT-T-
1 TTATATA
92425159 TTATATTA
1 TTATA-TA
92425167 TTAT
1 TTAT
92425171 GTCATTTTAT
Statistics
Matches: 86, Mismatches: 8, Indels: 29
0.70 0.07 0.24
Matches are distributed among these distances:
5 7 0.08
6 17 0.20
7 39 0.45
8 10 0.12
9 6 0.07
10 4 0.05
11 3 0.03
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (7 bp):
TTATATA
Found at i:92425087 original size:20 final size:19
Alignment explanation
Indices: 92425062--92425170 Score: 100
Period size: 20 Copynumber: 5.6 Consensus size: 19
92425052 TATTTATAAA
92425062 TTATATATTATATGATTA-T
1 TTATATATTATAT-ATTATT
92425081 TT-TATATTACTCATATTATT
1 TTATATATTA-T-ATATTATT
92425101 TATATATATTATATATTATT
1 T-TATATATTATATATTATT
* * *
92425121 TTCACATA-TATAATTTTATA
1 TT-ATATATTAT-ATATTATT
92425141 TTATATATTATA-ATTATT
1 TTATATATTATATATTATT
92425159 TTATATTATTAT
1 TTATA-TATTAT
92425171 GTCATTTTAT
Statistics
Matches: 75, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
18 16 0.21
19 22 0.29
20 28 0.37
21 2 0.03
22 7 0.09
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.59
Consensus pattern (19 bp):
TTATATATTATATATTATT
Found at i:92425129 original size:22 final size:22
Alignment explanation
Indices: 92425083--92425131 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
92425073 ATGATTATTT
*
92425083 TATATTACTCATATTATTTATA
1 TATATTACTCATATTATTTACA
92425105 TATATTA-T-ATATTATTTTCACA
1 TATATTACTCATATTA-TTT-ACA
92425127 TATAT
1 TATAT
92425132 AATTTTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 6 0.25
21 4 0.17
22 14 0.58
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (22 bp):
TATATTACTCATATTATTTACA
Found at i:92425162 original size:18 final size:18
Alignment explanation
Indices: 92425062--92425195 Score: 89
Period size: 20 Copynumber: 7.1 Consensus size: 18
92425052 TATTTATAAA
92425062 TTATATATTATATGATTATT
1 TTATATATTATA--ATTATT
*
92425082 TTATATTACTCAT-ATTATT
1 TTATA-TA-TTATAATTATT
92425101 TATATATATTATATATTATT
1 T-TATATATTATA-ATTATT
* *
92425121 TTCACATA-TATAATTTTATA
1 TT-ATATATTATAA--TTATT
92425141 TTATATATTATAATTATT
1 TTATATATTATAATTATT
* *
92425159 TTATATTATTAT-GTCATT
1 TTATA-TATTATAATTATT
92425177 TTATACTATTA-AA-TATT
1 TTATA-TATTATAATTATT
92425194 TT
1 TT
92425196 TATCTACATA
Statistics
Matches: 92, Mismatches: 11, Indels: 25
0.72 0.09 0.20
Matches are distributed among these distances:
17 5 0.05
18 27 0.29
19 24 0.26
20 31 0.34
21 2 0.02
22 3 0.03
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (18 bp):
TTATATATTATAATTATT
Found at i:92425180 original size:23 final size:23
Alignment explanation
Indices: 92425051--92425119 Score: 54
Period size: 22 Copynumber: 2.9 Consensus size: 23
92425041 GCTTTATTTT
*
92425051 TTATTTATAAATTATATATTATATGA
1 TTATTT-TATATTATATATTATA--A
92425077 TTATTTTATATTACTCATATTAT--
1 TTATTTTATATTA-T-ATATTATAA
*
92425100 TTA-TATATATTATATATTAT
1 TTATTTTATATTATATATTAT
92425120 TTTCACATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 7 0.18
21 1 0.03
22 8 0.21
23 3 0.08
25 6 0.15
26 7 0.18
27 7 0.18
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (23 bp):
TTATTTTATATTATATATTATAA
Found at i:92425180 original size:77 final size:78
Alignment explanation
Indices: 92425061--92425206 Score: 183
Period size: 77 Copynumber: 1.9 Consensus size: 78
92425051 TTATTTATAA
* *
92425061 ATTATATATTATATGATTATTTTATATTACTCATATTATTTATATATATTATATATTATTT-TC-
1 ATTATATATTATA-GATTATTTTATATTACTCATATCATTTATA-ATATTAAATATT-TTTATCT
92425124 ACATATATAATTTTAT
63 ACATATATAATTTTAT
* * *
92425140 ATTATATATTATA-ATTATTTTATATTA-TTATGTCATTTTATACTATTAAATATTTTTATCTAC
1 ATTATATATTATAGATTATTTTATATTACTCATATCA-TTTATAATATTAAATATTTTTATCTAC
92425203 ATAT
65 ATAT
92425207 TGTTATCATT
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
75 3 0.05
76 17 0.29
77 26 0.44
79 13 0.22
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.57
Consensus pattern (78 bp):
ATTATATATTATAGATTATTTTATATTACTCATATCATTTATAATATTAAATATTTTTATCTACA
TATATAATTTTAT
Found at i:92427419 original size:25 final size:25
Alignment explanation
Indices: 92427391--92427439 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
92427381 ATATATATCA
92427391 TAAA-ACAGCACATAAAAGAAATAAT
1 TAAACACAGCACATAAAA-AAATAAT
* *
92427416 TAAACATAGCATATAAAAAAATAA
1 TAAACACAGCACATAAAAAAATAA
92427440 AACTATGCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.65, C:0.10, G:0.06, T:0.18
Consensus pattern (25 bp):
TAAACACAGCACATAAAAAAATAAT
Found at i:92427956 original size:22 final size:21
Alignment explanation
Indices: 92427930--92427995 Score: 73
Period size: 19 Copynumber: 3.2 Consensus size: 21
92427920 TACAAATTAA
92427930 ATCTTCAAGATTACAAGATCAT
1 ATCTTCAAGATTAC-AGATCAT
* *
92427952 ATCTTCAAGATTGCATATCAT
1 ATCTTCAAGATTACAGATCAT
* *
92427973 ATC-T-AAGATTGCATATCAT
1 ATCTTCAAGATTACAGATCAT
92427992 ATCT
1 ATCT
92427996 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.44
20 1 0.02
21 9 0.22
22 13 0.32
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (21 bp):
ATCTTCAAGATTACAGATCAT
Found at i:92427982 original size:19 final size:19
Alignment explanation
Indices: 92427947--92428044 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
92427937 AGATTACAAG
92427947 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
92427968 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
92427987 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
92428004 ATCATATCTAAGCTTGCAT
1 ATCATATCTAAGATTGCAT
92428023 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
92428042 ATC
1 ATC
92428045 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:92428011 original size:36 final size:37
Alignment explanation
Indices: 92427947--92428044 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
92427937 AGATTACAAG
92427947 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
*
92427987 ATCATATCTAAGATTG-TATCATATCTAAGCTTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
92428023 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
92428045 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:92428800 original size:206 final size:206
Alignment explanation
Indices: 92428433--92429380 Score: 1454
Period size: 206 Copynumber: 4.6 Consensus size: 206
92428423 AATCTGTTAT
* * * *
92428433 CTTCGATCTGTTTTCTGACAAAACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * * * * * *
92428498 GCGAAAACCAAATCAACTATGTCTTCGGTTTGCTCCTTGTAAGCACAAGGATACCAAAACATCCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * **
92428563 GGATTTGCTTCAGTCTAATCATATGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
*
92428628 GAGACACCAAA
196 GAGACGCCAAA
* * *
92428639 CTTCAATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGTAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
92428704 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* **
92428769 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCC-CCGTCGAATAT
131 GGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGC-CCTCCGTCGAATAT
92428833 GGAGACGCCAAA
195 GGAGACGCCAAA
* * *
92428845 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTACATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
92428910 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * *
92428975 GGATCTGCTTCAGTATAAATATATGAAGGCCAGATCTACTATGTGTCTGCTCTCCGTCAAATATG
131 GGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
92429040 GAGACGCCAAA
196 GAGACGCCAAA
*
92429051 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
92429116 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC-TCCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCAT-CT
* * * * *
92429180 TCGATCTGCTTTAGTATAAACATATGAAGGCCAGATCTGCTATGCGTCTGCTCTCCGTTGAATAT
130 TGGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
92429245 GGAGACGCCAAA
195 GGAGACGCCAAA
* *
92429257 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGCGTAA--AC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
92429320 TGTGAAAGCCAAATTAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
66 -GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
92429381 TGCTATCTTC
Statistics
Matches: 686, Mismatches: 52, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
204 2 0.00
205 59 0.09
206 623 0.91
207 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
GAGACGCCAAA
Found at i:92429400 original size:44 final size:44
Alignment explanation
Indices: 92429350--92429718 Score: 281
Period size: 44 Copynumber: 8.4 Consensus size: 44
92429340 TGTCTTCGAT
* * *
92429350 TTGTTCCTTGTAAGCACAAGGATGCCAAATCTGCTATCTTCAAC
1 TTGTTCCCTATAAACACAAGGATGCCAAATCTGCTATCTTCAAC
* * *** *
92429394 TTGTTCCCTATAAAAACAGGGATGCC--ATGCTAAAATCTTCGATC
1 TTGTTCCCTATAAACACAAGGATGCCAAAT-CTGCTATCTTC-AAC
** * * * * * *
92429438 TACTTCACTGTAAGCAC-AGGAATGTCAGATCTGCTATCTTCAAT
1 TTGTTCCCTATAAACACAAGG-ATGCCAAATCTGCTATCTTCAAC
* *
92429482 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTTAAC
1 TTGTTCCCTATAAACACAAGGATGCCAAATCTGCTATCTTCAAC
** *
92429526 TTGTTCCCTATAAACAC-AGTGATGCC--ATGCTGAAATCTTCGA-
1 TTGTTCCCTATAAACACAAG-GATGCCAAAT-CTGCTATCTTCAAC
* * * * * *
92429568 TCTGCTTCGCTGTAAGCAC-AGGAATGCCAGATCTGCTATCTTCGAT
1 T-TG-TTCCCTATAAACACAAGG-ATGCCAAATCTGCTATCTTCAAC
* *
92429614 TTGTTCCCTATAAACATAGGGATGCCAAATCTGCTATCTTCAAC
1 TTGTTCCCTATAAACACAAGGATGCCAAATCTGCTATCTTCAAC
* **
92429658 TTGTTCCCTATAAACACAGGGATGCC--ATGCTGAAATCTTCAAC
1 TTGTTCCCTATAAACACAAGGATGCCAAAT-CTGCTATCTTCAAC
*
92429701 TCGTTCCCTATAAACACA
1 TTGTTCCCTATAAACACA
92429719 GGGACACGAT
Statistics
Matches: 255, Mismatches: 54, Indels: 33
0.75 0.16 0.10
Matches are distributed among these distances:
42 7 0.03
43 52 0.20
44 166 0.65
45 25 0.10
46 5 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (44 bp):
TTGTTCCCTATAAACACAAGGATGCCAAATCTGCTATCTTCAAC
Found at i:92429508 original size:132 final size:132
Alignment explanation
Indices: 92429342--92429697 Score: 595
Period size: 132 Copynumber: 2.7 Consensus size: 132
92429332 ATTAGCTATG
* * * *
92429342 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
* * *
92429407 AAACAGGGATGCCATGCTAAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGCCAGATCTGC
92429472 TA
131 TA
* *
92429474 TCTTCAATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTTAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
* * *
92429539 ACACAGTGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGCCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGCCAGATCTGC
92429604 TA
131 TA
*
92429606 TCTTCGATTTGTTCCCTATAAACATAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
92429671 ACACAGGGATGCCATGCTGAAATCTTC
66 ACACAGGGATGCCATGCTGAAATCTTC
92429698 AACTCGTTCC
Statistics
Matches: 208, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 208 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (132 bp):
TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
ACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGCCAGATCTGC
TA
Found at i:92429758 original size:175 final size:175
Alignment explanation
Indices: 92429452--92429820 Score: 542
Period size: 175 Copynumber: 2.1 Consensus size: 175
92429442 TCACTGTAAG
* * * * **
92429452 CACAGGAATGTCAGATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCT
1 CACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCC-AATCTGAA
* * * **
92429517 ATCTTTAACTTGTTCCCTATAAACACAGTGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTA
65 ATCTTCAACTCGTTCCCTATAAACACAGGGACACCATGCTGAAATCTTCGATCTGCTTCGCTGTA
* *
92429582 AGCACAGGAATGCCAGATCTGCTATCTTCGATTTGTTCCCTATAAA
130 AGCACAGGAATGCCAGATCTACTATCTTCAATTTGTTCCCTATAAA
*
92429628 CATAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCC-ATGCTGAA
1 CACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCAAT-CTGAA
* *
92429692 ATCTTCAACTCGTTCCCTATAAACACAGGGACACGATGCTGAAATCTTTGATCTGCTTCGCTGTA
65 ATCTTCAACTCGTTCCCTATAAACACAGGGACACCATGCTGAAATCTTCGATCTGCTTCGCTGTA
* * *
92429757 AGCACAGGAGTGTCAGATCTACTATCTTCAATTTGTTCCTTATAAA
130 AGCACAGGAATGCCAGATCTACTATCTTCAATTTGTTCCCTATAAA
92429803 CACAGGGATGCCAAATCT
1 CACAGGGATGCCAAATCT
92429821 TGTTTCTTTG
Statistics
Matches: 172, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
174 2 0.01
175 119 0.69
176 51 0.30
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (175 bp):
CACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCAATCTGAAA
TCTTCAACTCGTTCCCTATAAACACAGGGACACCATGCTGAAATCTTCGATCTGCTTCGCTGTAA
GCACAGGAATGCCAGATCTACTATCTTCAATTTGTTCCCTATAAA
Found at i:92429803 original size:88 final size:86
Alignment explanation
Indices: 92429510--92429810 Score: 247
Period size: 88 Copynumber: 3.4 Consensus size: 86
92429500 GGGATGCCAA
* * * *
92429510 ATCTGCTATCTTTAACTTGTTCCCTATAAACACAGTGATGCC-ATGCTGAAATCTTCGATCTGCT
1 ATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGA--CCAATGCTGAAATCTTTGATCTGCT
*
92429574 TCGCTGTAAGCACAGGAATGCCAG
64 TCGCTGTAAGCACAGGAGTG-CAG
* * * * ** * *
92429598 ATCTGCTATCTTCGATTTGTTCCCTATAAACATAGGGATGCCAAAT-CTGCTATC-TTCAACTTG
1 ATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGA--CC-AATGCTGAAATCTTTGATC-TG
* * * *
92429661 -TTCCCTATAAACACAGG-GATGC-C
62 CTTCGCTGTAAGCACAGGAG-TGCAG
* * *
92429684 ATGCTGA-AATCTTCAACTCGTTCCCTATAAACACAGGGACACGATGCTGAAATCTTTGATCTGC
1 AT-CT-ACTATCTTCAACTTGTTCCCTATAAACACAGGGAC-CAATGCTGAAATCTTTGATCTGC
92429748 TTCGCTGTAAGCACAGGAGTGTCAG
63 TTCGCTGTAAGCACAGGAGTG-CAG
* *
92429773 ATCTACTATCTTCAATTTGTTCCTTATAAACACAGGGA
1 ATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGA
92429811 TGCCAAATCT
Statistics
Matches: 165, Mismatches: 34, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
85 3 0.02
86 11 0.07
87 51 0.31
88 88 0.53
89 10 0.06
90 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (86 bp):
ATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGACCAATGCTGAAATCTTTGATCTGCTTC
GCTGTAAGCACAGGAGTGCAG
Found at i:92429807 original size:44 final size:43
Alignment explanation
Indices: 92429342--92429820 Score: 224
Period size: 44 Copynumber: 10.9 Consensus size: 43
92429332 ATTAGCTATG
* * * * * * *
92429342 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCTGCTA
1 TCTTCAATTTGTTCCCTATAAACAC-AGGGTGCCAGATCTACTA
* * **
92429386 TCTTCAACTTGTTCCCTATAAAAACAGGGATGCC--ATGCTAAAA
1 TCTTCAATTTGTTCCCTATAAACACAGGG-TGCCAGAT-CTACTA
* ** * * * * * *
92429429 TCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTA
1 TCTTCAAT-TTGTTCCCTATAAACACAGG-GTGCCAGATCTACTA
* *
92429474 TCTTCAATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTA
1 TCTTCAATTTGTTCCCTATAAACACAGGG-TGCCAGATCTACTA
* * * *
92429518 TCTTTAACTTGTTCCCTATAAACACAGTGATGCC--ATGCTGA-AA
1 TCTTCAATTTGTTCCCTATAAACACAG-GGTGCCAGAT-CT-ACTA
* * * * * * *
92429561 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGCCAGATCTGCTA
1 TCTTCAATTTG-TTCCCTATAAACACAGG-GTGCCAGATCTACTA
* * * *
92429606 TCTTCGATTTGTTCCCTATAAACATAGGGATGCCAAATCTGCTA
1 TCTTCAATTTGTTCCCTATAAACACAGGG-TGCCAGATCTACTA
* *
92429650 TCTTCAACTTGTTCCCTATAAACACAGGGATGCC--ATGCTGA-AA
1 TCTTCAATTTGTTCCCTATAAACACAGGG-TGCCAGAT-CT-ACTA
* * * *
92429693 TCTTCAACTCGTTCCCTATAAACACA-GG-GACACGATGCTGA-AA
1 TCTTCAATTTGTTCCCTATAAACACAGGGTGCCA-GAT-CT-ACTA
** * * * * *
92429736 TCTTTGATCTGCTTCGCTGTAAGCACAGGAGTGTCAGATCTACTA
1 TCTTCAATTTG-TTCCCTATAAACACAGG-GTGCCAGATCTACTA
* *
92429781 TCTTCAATTTGTTCCTTATAAACACAGGGATGCCAAATCT
1 TCTTCAATTTGTTCCCTATAAACACAGGG-TGCCAGATCT
92429821 TGTTTCTTTG
Statistics
Matches: 329, Mismatches: 79, Indels: 54
0.71 0.17 0.12
Matches are distributed among these distances:
40 2 0.01
42 8 0.02
43 67 0.20
44 205 0.62
45 36 0.11
46 8 0.02
47 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
TCTTCAATTTGTTCCCTATAAACACAGGGTGCCAGATCTACTA
Found at i:92430691 original size:14 final size:14
Alignment explanation
Indices: 92430672--92430703 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
92430662 TGGCCTCTCC
92430672 ATTTTTTTCTTTTT
1 ATTTTTTTCTTTTT
92430686 ATTTTTTTCTTTTT
1 ATTTTTTTCTTTTT
92430700 -TTTT
1 ATTTT
92430704 GAAATAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.06, C:0.06, G:0.00, T:0.88
Consensus pattern (14 bp):
ATTTTTTTCTTTTT
Found at i:92435813 original size:25 final size:25
Alignment explanation
Indices: 92435785--92435833 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
92435775 ATATATATCA
92435785 TAAA-ATAGCACATAAAAGAAATAAT
1 TAAACATAGCACATAAAA-AAATAAT
* *
92435810 TAAACATAGTATATAAAAAAATAA
1 TAAACATAGCACATAAAAAAATAA
92435834 AACTATGCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.22
Consensus pattern (25 bp):
TAAACATAGCACATAAAAAAATAAT
Found at i:92436352 original size:22 final size:21
Alignment explanation
Indices: 92436322--92436387 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
92436312 TACAAATTAA
92436322 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
92436344 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
92436365 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
92436384 ATCT
1 ATCT
92436388 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:92436374 original size:19 final size:19
Alignment explanation
Indices: 92436339--92436472 Score: 222
Period size: 19 Copynumber: 7.2 Consensus size: 19
92436329 AGATTACAAG
92436339 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
92436360 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
92436379 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
92436396 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
92436415 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
92436432 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
92436451 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
92436470 ATC
1 ATC
92436473 CTTAAAGATT
Statistics
Matches: 109, Mismatches: 0, Indels: 10
0.92 0.00 0.08
Matches are distributed among these distances:
17 34 0.31
19 66 0.61
20 1 0.01
21 8 0.07
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:92436403 original size:36 final size:36
Alignment explanation
Indices: 92436339--92436466 Score: 220
Period size: 36 Copynumber: 3.4 Consensus size: 36
92436329 AGATTACAAG
92436339 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG--TATCATATCTAAGATTGCAT
92436379 ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
92436415 ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
92436451 ATCATATCTAAGATTG
1 ATCATATCTAAGATTG
92436467 CATATCCTTA
Statistics
Matches: 88, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
36 72 0.82
38 7 0.08
39 1 0.01
40 8 0.09
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (36 bp):
ATCATATCTAAGATTGTATCATATCTAAGATTGCAT
Found at i:92436413 original size:55 final size:54
Alignment explanation
Indices: 92436339--92436472 Score: 216
Period size: 55 Copynumber: 2.4 Consensus size: 54
92436329 AGATTACAAG
92436339 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTG-T
1 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG--TATCATATCTAAGATTGAT
92436396 ATCATATCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTG-AT
92436451 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTGCATATC
92436473 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
53 17 0.23
55 49 0.65
56 1 0.01
57 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (54 bp):
ATCATATCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGAT
Found at i:92443401 original size:27 final size:27
Alignment explanation
Indices: 92443351--92443595 Score: 300
Period size: 27 Copynumber: 9.1 Consensus size: 27
92443341 GCTGAAATGG
92443351 TGACTGAAATA-CCCTCATAAGGTAAAA
1 TGACTGAAATACCCCT-ATAAGGTAAAA
* * *
92443378 TAACTAAAATACCCCTATAGGGTAAAA
1 TGACTGAAATACCCCTATAAGGTAAAA
92443405 TGACTGAAATACCCC-ATAAGGTAAAA
1 TGACTGAAATACCCCTATAAGGTAAAA
**
92443431 TGACCAAAATACCTCC-ATAAGGTAAAA
1 TGACTGAAATACC-CCTATAAGGTAAAA
* * *
92443458 TGTCTGAAATACCTCC-ATATGATAAAA
1 TGACTGAAATACC-CCTATAAGGTAAAA
* *
92443485 TGACCGAAATACCCCTATAGGGTAAAA
1 TGACTGAAATACCCCTATAAGGTAAAA
*
92443512 TGACTAAAATACCCCTATAAGGTAAAA
1 TGACTGAAATACCCCTATAAGGTAAAA
* *
92443539 TGACTGTAATACCCCTATAGGGTAAAA
1 TGACTGAAATACCCCTATAAGGTAAAA
* *
92443566 TGACTGTAGTACCCCTATAAGGTAAAA
1 TGACTGAAATACCCCTATAAGGTAAAA
92443593 TGA
1 TGA
92443596 TTGATTTGCC
Statistics
Matches: 190, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 23 0.12
27 163 0.86
28 4 0.02
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (27 bp):
TGACTGAAATACCCCTATAAGGTAAAA
Found at i:92445892 original size:17 final size:18
Alignment explanation
Indices: 92445870--92445905 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
92445860 ACTTTGGGCT
92445870 TTCGGTATTA-TTTTTCC
1 TTCGGTATTACTTTTTCC
*
92445887 TTCGGTTTTACTTTTTCC
1 TTCGGTATTACTTTTTCC
92445905 T
1 T
92445906 CCAATCCCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.08, C:0.19, G:0.11, T:0.61
Consensus pattern (18 bp):
TTCGGTATTACTTTTTCC
Found at i:92446565 original size:27 final size:27
Alignment explanation
Indices: 92446535--92446700 Score: 183
Period size: 27 Copynumber: 6.1 Consensus size: 27
92446525 TGAAATACCT
*
92446535 ATGACTCAAATACCCCCATAGGGTAAA
1 ATGACTCAAATACCCCTATAGGGTAAA
92446562 ATGAC-CGAAATA-CCCTCATAGGGTAAA
1 ATGACTC-AAATACCCCT-ATAGGGTAAA
* *
92446589 ATGACTGAAATACCCTTATAGGGTAAA
1 ATGACTCAAATACCCCTATAGGGTAAA
* * *
92446616 ATGACTAAAATACCTCTATAAGGTAAA
1 ATGACTCAAATACCCCTATAGGGTAAA
**
92446643 ATGACTGTAATACCCCTATAGGGTAAA
1 ATGACTCAAATACCCCTATAGGGTAAA
** * * *
92446670 ATGACTGTAGTACCCCTGTAAGGTAAA
1 ATGACTCAAATACCCCTATAGGGTAAA
92446697 ATGA
1 ATGA
92446701 TTGATTTGCC
Statistics
Matches: 121, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
26 4 0.03
27 114 0.94
28 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.23
Consensus pattern (27 bp):
ATGACTCAAATACCCCTATAGGGTAAA
Found at i:92446645 original size:81 final size:81
Alignment explanation
Indices: 92446535--92446700 Score: 217
Period size: 81 Copynumber: 2.0 Consensus size: 81
92446525 TGAAATACCT
* *
92446535 ATGACTCAAATACCCCCATAGGGTAAAATGACCGAAATA-CCCTCATAGGGTAAAATGACTGAAA
1 ATGACTAAAATACCCCCATAAGGTAAAATGACCGAAATACCCCT-ATAGGGTAAAATGACTGAAA
* *
92446599 TACCCTTATAGGGTAAA
65 TACCCCTATAAGGTAAA
* * * * * *
92446616 ATGACTAAAATACCTCTATAAGGTAAAATGACTGTAATACCCCTATAGGGTAAAATGACTGTAGT
1 ATGACTAAAATACCCCCATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACTGAAAT
*
92446681 ACCCCTGTAAGGTAAA
66 ACCCCTATAAGGTAAA
92446697 ATGA
1 ATGA
92446701 TTGATTTGCC
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
81 69 0.95
82 4 0.05
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.23
Consensus pattern (81 bp):
ATGACTAAAATACCCCCATAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACTGAAAT
ACCCCTATAAGGTAAA
Found at i:92446675 original size:54 final size:53
Alignment explanation
Indices: 92446535--92446700 Score: 215
Period size: 54 Copynumber: 3.1 Consensus size: 53
92446525 TGAAATACCT
* * * *
92446535 ATGACTCAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAAATGACTGAAATACCCT-ATAAGGTAAA
* *
92446589 ATGACTGAAATACCCTTATAGGGTAAAATGACTAAAATACCTCTATAAGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAAATGACTGAAATACC-CTATAAGGTAAA
* * * *
92446643 ATGACTGTAATACCCCTATAGGGTAAAATGACTGTAGTACCCCTGTAAGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAAATGACTGAAATA-CCCTATAAGGTAAA
92446697 ATGA
1 ATGA
92446701 TTGATTTGCC
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
54 94 0.96
55 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.23
Consensus pattern (53 bp):
ATGACTGAAATACCCCTATAGGGTAAAATGACTGAAATACCCTATAAGGTAAA
Found at i:92454596 original size:64 final size:64
Alignment explanation
Indices: 92454517--92454645 Score: 213
Period size: 64 Copynumber: 2.0 Consensus size: 64
92454507 CATTCATACC
** * *
92454517 CTAGTCGTTGATTTCCATAAATGGATAGATAGTCTATCACCATTAACTTATTTTCTTAAATCTT
1 CTAGTCGTTGATTTCCATAAACAGATAGATAGTCTATCACCATCAACTCATTTTCTTAAATCTT
*
92454581 CTAGTCGTTGATTTCCATAAACAGATAGATAGTCTGTCACCATCAACTCATTTTCTTAAATCTT
1 CTAGTCGTTGATTTCCATAAACAGATAGATAGTCTATCACCATCAACTCATTTTCTTAAATCTT
92454645 C
1 C
92454646 AAATGTTTGT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (64 bp):
CTAGTCGTTGATTTCCATAAACAGATAGATAGTCTATCACCATCAACTCATTTTCTTAAATCTT
Found at i:92461430 original size:33 final size:33
Alignment explanation
Indices: 92461388--92461453 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
92461378 GAGAGAATAA
92461388 GACCAGTGGCTTATCCACTTATATTACCATCAG
1 GACCAGTGGCTTATCCACTTATATTACCATCAG
92461421 GACCAGTGGCTTATCCACTTATATTACCATCAG
1 GACCAGTGGCTTATCCACTTATATTACCATCAG
92461454 AACTTGAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30
Consensus pattern (33 bp):
GACCAGTGGCTTATCCACTTATATTACCATCAG
Found at i:92466181 original size:29 final size:29
Alignment explanation
Indices: 92466139--92466196 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
92466129 GCTGCTTCAT
92466139 ATGCAACTTGCTTGTTAGAGTTTTCGACA
1 ATGCAACTTGCTTGTTAGAGTTTTCGACA
*
92466168 ATGCAAGTTGCTTGTTAGAGTTTTCGACA
1 ATGCAACTTGCTTGTTAGAGTTTTCGACA
92466197 TACATATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (29 bp):
ATGCAACTTGCTTGTTAGAGTTTTCGACA
Found at i:92467805 original size:43 final size:42
Alignment explanation
Indices: 92467751--92467960 Score: 140
Period size: 43 Copynumber: 4.9 Consensus size: 42
92467741 ACCTAGATGA
* *
92467751 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTACTGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA-TGC
** * * * *
92467794 GATTATGTGTAAGACCATCTTTGGGATATTGGCATCAT-TATAC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT--TGTATGC
* *
92467837 GATTACATGTAAGACCATGTCTGGGACATCGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-T-ATGC
*** * * * * * *
92467880 GATTTTGTGTAAAACCCTGTCTAGGACAGTGGCATCGATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATGC
* *
92467923 G-TTAACATGTAAGACCATATCTGGGATA-TGGCATTGTA
1 GATT-ACATGTAAGACCATGTCTGGGACATTGGCATTGTA
92467961 CGAGCTTTAT
Statistics
Matches: 126, Mismatches: 34, Indels: 16
0.72 0.19 0.09
Matches are distributed among these distances:
41 2 0.02
42 11 0.09
43 108 0.86
44 4 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATGC
Done.