Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 290 of 325
Found at i:92886007 original size:21 final size:21
Alignment explanation
Indices: 92885954--92886018 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
92885944 TCAGCTCTTT
* *
92885954 TGAGCTTCTATTTAACCCTTA
1 TGAGCTTCCATTCAACCCTTA
* * * * *
92885975 TGGGTTTTCATTCAGCTCTTA
1 TGAGCTTCCATTCAACCCTTA
92885996 TGAGCTTCCATTCAACCCTTA
1 TGAGCTTCCATTCAACCCTTA
92886017 TG
1 TG
92886019 GATTTCTGTT
Statistics
Matches: 32, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.42
Consensus pattern (21 bp):
TGAGCTTCCATTCAACCCTTA
Found at i:92886038 original size:42 final size:42
Alignment explanation
Indices: 92885880--92886051 Score: 186
Period size: 42 Copynumber: 4.1 Consensus size: 42
92885870 CGATCTTCTG
* * * * * *
92885880 TTTAACTCATATGAGTTTCTGTTCAGCTCTTTTGAGTTTCTA
1 TTTAACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCCA
* *
92885922 TTTAA-CCTTGATGGGTTTCTGTTCAGCTCTTTTGAGCTTCTA
1 TTTAACCCTT-ATGGGTTTCTGTTCAGCTCTTATGAGCTTCCA
*
92885964 TTTAACCCTTATGGGTTT-TCATTCAGCTCTTATGAGCTTCCA
1 TTTAACCCTTATGGGTTTCT-GTTCAGCTCTTATGAGCTTCCA
* * * * *
92886006 TTCAACCCTTATGGATTTCTGTTTAGCACTTATGTGCTTCCA
1 TTTAACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCCA
92886048 TTTA
1 TTTA
92886052 GCCTTCGAGC
Statistics
Matches: 112, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
41 3 0.03
42 104 0.93
43 5 0.04
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (42 bp):
TTTAACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCCA
Found at i:92892077 original size:17 final size:16
Alignment explanation
Indices: 92892048--92892086 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
92892038 GTTTATTTTT
*
92892048 TATTTATAATTATTAA
1 TATTAATAATTATTAA
92892064 TATTAATAATTTATTAA
1 TATTAATAA-TTATTAA
*
92892081 TTTTAA
1 TATTAA
92892087 AAAATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTAATAATTATTAA
Found at i:92896960 original size:2 final size:2
Alignment explanation
Indices: 92896953--92896980 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
92896943 AAAGAGCGAC
92896953 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
92896981 TGAGGGGGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:92900063 original size:20 final size:20
Alignment explanation
Indices: 92900038--92900157 Score: 118
Period size: 20 Copynumber: 6.0 Consensus size: 20
92900028 TTGTACAAGA
92900038 TTGCACTTCGGTGCCTCTAT
1 TTGCACTTCGGTGCCTCTAT
*
92900058 TTGCACTTCGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTAT
* * * *
92900078 TTACACTTCGATGTCTCTGT
1 TTGCACTTCGGTGCCTCTAT
* *
92900098 TTGCACTTTGGTGTCTCTGAT
1 TTGCACTTCGGTGCCTCT-AT
* * *
92900119 TT-CACTTCGATGTCTCTGT
1 TTGCACTTCGGTGCCTCTAT
92900138 TTGCACTAT-GGTGCCTCTAT
1 TTGCACT-TCGGTGCCTCTAT
92900158 ATAGCACATT
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
19 3 0.04
20 76 0.92
21 4 0.05
ACGTcount: A:0.11, C:0.26, G:0.20, T:0.43
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTCTAT
Found at i:92900085 original size:40 final size:39
Alignment explanation
Indices: 92900036--92900155 Score: 152
Period size: 40 Copynumber: 3.0 Consensus size: 39
92900026 ACTTGTACAA
* * * *
92900036 GATTGCACTTCGGTGCCTCTATTTGCACTTCGGTGCCTCT
1 GATTTCACTTCGATGTCTCTGTTTGCACTT-GGTGCCTCT
*
92900076 G-TTTACACTTCGATGTCTCTGTTTGCACTTTGGTGTCTCT
1 GATTT-CACTTCGATGTCTCTGTTTGCAC-TTGGTGCCTCT
92900116 GATTTCACTTCGATGTCTCTGTTTGCACTATGGTGCCTCT
1 GATTTCACTTCGATGTCTCTGTTTGCACT-TGGTGCCTCT
92900156 ATATAGCACA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
39 3 0.04
40 62 0.89
41 5 0.07
ACGTcount: A:0.11, C:0.26, G:0.21, T:0.42
Consensus pattern (39 bp):
GATTTCACTTCGATGTCTCTGTTTGCACTTGGTGCCTCT
Found at i:92901944 original size:30 final size:30
Alignment explanation
Indices: 92901908--92901968 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
92901898 TTCCCGAGCC
92901908 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
92901938 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
92901968 T
1 T
92901969 GTATTAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:92902694 original size:49 final size:50
Alignment explanation
Indices: 92902614--92902859 Score: 325
Period size: 49 Copynumber: 4.9 Consensus size: 50
92902604 AGCTATTGTG
*
92902614 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
92902664 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
92902714 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
92902764 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
92902814 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
92902860 GCTTCGGCTA
Statistics
Matches: 169, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 83 0.49
50 48 0.28
51 38 0.22
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:92902751 original size:28 final size:28
Alignment explanation
Indices: 92902719--92902802 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
92902709 AACTTCGATC
92902719 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
92902747 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
92902769 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
92902797 ACGTGT
1 ACGTGT
92902803 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:92905638 original size:16 final size:15
Alignment explanation
Indices: 92905600--92905638 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
92905590 TGGATTCTCG
*
92905600 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
92905615 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
92905630 TATTCTTGG
1 TA-TCTTGG
92905639 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:92908467 original size:49 final size:50
Alignment explanation
Indices: 92908387--92908632 Score: 259
Period size: 49 Copynumber: 4.9 Consensus size: 50
92908377 AGCTATTGTG
* *
92908387 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* ** * * * * *
92908437 -GGTCGCATGTGTAGTGTTAAGTGTAGGCTACTATGCGTACCTGAAAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
92908487 CA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
92908537 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATT
* *
92908587 -GGT-AGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCA-CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
92908633 GCTTCGGCTA
Statistics
Matches: 161, Mismatches: 28, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
48 1 0.01
49 80 0.50
50 47 0.29
51 33 0.20
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:92908524 original size:28 final size:28
Alignment explanation
Indices: 92908492--92908575 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
92908482 AACTTCAATC
92908492 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
92908520 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
92908542 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
92908570 ACGTGT
1 ACGTGT
92908576 ACCGAATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:92908631 original size:99 final size:100
Alignment explanation
Indices: 92908390--92908632 Score: 278
Period size: 100 Copynumber: 2.4 Consensus size: 100
92908380 TATTGTGAGG
* * * **
92908390 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTGTT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
92908455 AAGTGTAGGCTACTATGCGTACCTGAAAACTTCAA
66 AAGTGCAGGCTACTACGCGTACCTGAAAACTTCAA
* * ** *
92908490 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* **
92908555 TAAGTGCAGGCTACTACGTGTACC-GAATAA-TT-GG
65 TAAGTGCAGGCTACTACGCGTACCTGAA-AACTTCAA
* *
92908589 T-AGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCA-CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
92908633 GCTTCGGCTA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
98 1 0.01
99 37 0.30
100 48 0.39
101 36 0.30
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCTGAAAACTTCAA
Found at i:92913933 original size:62 final size:62
Alignment explanation
Indices: 92913836--92913959 Score: 221
Period size: 62 Copynumber: 2.0 Consensus size: 62
92913826 ACGACCATGT
*
92913836 TTCCCTACTTCGAATGCCCACACAGCTTGGCCACACGACCGTGTGACCCCTGCAGTGTTGAA
1 TTCCCTACTTCGAATGCCCACACAGCTTGGCCACACGACCGTGTGACCCCTACAGTGTTGAA
* *
92913898 TTCCCTACTTCGAATGCCCACATAGCTTGGCCACACGATCGTGTGACCCCTACAGTGTTGAA
1 TTCCCTACTTCGAATGCCCACACAGCTTGGCCACACGACCGTGTGACCCCTACAGTGTTGAA
92913960 AATTTTCATT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.22, C:0.34, G:0.20, T:0.24
Consensus pattern (62 bp):
TTCCCTACTTCGAATGCCCACACAGCTTGGCCACACGACCGTGTGACCCCTACAGTGTTGAA
Found at i:92920808 original size:26 final size:26
Alignment explanation
Indices: 92920760--92920809 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
92920750 TTTCATCCCT
**
92920760 ATTTTACCCTCAGTAAATTTTTGACG
1 ATTTTACCCTCAGTAAAAATTTGACG
**
92920786 ATTTTACCCTTGGTAAAAATTTGA
1 ATTTTACCCTCAGTAAAAATTTGA
92920810 GAAAATATGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTCAGTAAAAATTTGACG
Found at i:92922282 original size:25 final size:24
Alignment explanation
Indices: 92922249--92922297 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
92922239 GAGGGATTTT
*
92922249 TTATTTTATTTAATATTAATATAA
1 TTATTTTATTTAAAATTAATATAA
92922273 TTATATTTATTTAAAATTAATATAA
1 TTAT-TTTATTTAAAATTAATATAA
92922298 AATTTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TTATTTTATTTAAAATTAATATAA
Found at i:92922320 original size:18 final size:18
Alignment explanation
Indices: 92922271--92922320 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
92922261 ATATTAATAT
92922271 AATT-ATATT-TATTTAA
1 AATTAATATTATATTTAA
* *
92922287 AATTAATATAAAATTTAA
1 AATTAATATTATATTTAA
* *
92922305 ATTTATTATTATATTT
1 AATTAATATTATATTT
92922321 TTTTGAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 4 0.15
17 4 0.15
18 18 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AATTAATATTATATTTAA
Found at i:92922672 original size:3 final size:3
Alignment explanation
Indices: 92922631--92922657 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
92922621 TAGTTTACTC
92922631 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
92922658 ATTTTTCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:92925354 original size:24 final size:24
Alignment explanation
Indices: 92925327--92925383 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
92925317 AAAGGGTTAA
92925327 ATAACTATTTGAGACATGAATTTG
1 ATAACTATTTGAGACATGAATTTG
*
92925351 ATAACTATTTGAGGCATGAATTTG
1 ATAACTATTTGAGACATGAATTTG
92925375 ATAACTATT
1 ATAACTATT
92925384 CTCATATTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (24 bp):
ATAACTATTTGAGACATGAATTTG
Found at i:92937182 original size:50 final size:50
Alignment explanation
Indices: 92937102--92937201 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
92937092 ATTGATCAAC
*
92937102 TTAATTTGATGTAATCTTTCCTTATTTGTTTATTTCACCAAAAAAAATTT
1 TTAAGTTGATGTAATCTTTCCTTATTTGTTTATTTCACCAAAAAAAATTT
92937152 TTAAGTTGATGTAATCTTTCCTTATTTGTTTATTTCACCAAAAAAAATTT
1 TTAAGTTGATGTAATCTTTCCTTATTTGTTTATTTCACCAAAAAAAATTT
92937202 AATTAACCTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.49
Consensus pattern (50 bp):
TTAAGTTGATGTAATCTTTCCTTATTTGTTTATTTCACCAAAAAAAATTT
Found at i:92938069 original size:16 final size:17
Alignment explanation
Indices: 92938050--92938083 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
92938040 ATATATATTT
*
92938050 TTATTTT-ATTTTTTAA
1 TTATTTTAAATTTTTAA
92938066 TTATTTTAAATTTTTAA
1 TTATTTTAAATTTTTAA
92938083 T
1 T
92938084 ATAACCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTTTAAATTTTTAA
Found at i:92938156 original size:21 final size:22
Alignment explanation
Indices: 92938130--92938219 Score: 64
Period size: 22 Copynumber: 4.1 Consensus size: 22
92938120 GTTTTAAGAA
*
92938130 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
92938151 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
92938173 GTT-TTTAAATATATTTGATTTATTAT
1 -TTGTTT-TA-ATATTT-ATTT-TTAT
*
92938199 AT-TTTTAA-ATTT-TTTTTAT
1 TTGTTTTAATATTTATTTTTAT
92938218 TT
1 TT
92938220 AATGAAATAA
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
19 5 0.09
20 3 0.05
21 10 0.18
22 16 0.29
23 4 0.07
24 7 0.12
25 7 0.12
26 4 0.07
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:92938172 original size:22 final size:21
Alignment explanation
Indices: 92938144--92938219 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 21
92938134 TTTAGTATTA
92938144 TTTTTATTTGTTTTAATATTTG
1 TTTTTATTT-TTTTAATATTTG
*
92938166 TTTTTATGTTTTTAAATATATTTG
1 TTTTTAT-TTTTT-TA-ATATTTG
*
92938190 ATTTATTATATTTTTAA-ATTT-
1 -TTT-TTATTTTTTTAATATTTG
92938211 TTTTTATTT
1 TTTTTATTT
92938220 AATGAAATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
19 5 0.11
20 3 0.07
22 14 0.31
23 4 0.09
24 8 0.18
25 7 0.16
26 4 0.09
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (21 bp):
TTTTTATTTTTTTAATATTTG
Found at i:92938220 original size:26 final size:26
Alignment explanation
Indices: 92938159--92938208 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
92938149 ATTTGTTTTA
*
92938159 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
92938183 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
92938209 TTTTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:92941568 original size:67 final size:68
Alignment explanation
Indices: 92941464--92941725 Score: 251
Period size: 67 Copynumber: 3.9 Consensus size: 68
92941454 AAAGAGGTTA
* * * * * *
92941464 TAAGGTGTAAGACCATAGCTCGGCTATGACAATCAGTGCAGTCCACCAGGATATTAAATAAAAGG
1 TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACATTAAACAAAAGG
92941529 GAT
66 GAT
* * ** ***
92941532 TAAGGGGTAAGACCA-AGCTCAGCTATGGCAACCAGTGTAGTCCACTAGGACCCTAAACATGGGG
1 TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACATTAAACAAAAGG
92941596 GAT
66 GAT
* * ** **
92941599 TAAGGTGTAAGACCATAACTCAGCTATAGCAACCAGTGTAGTCTGCCAGGACATTAAACATGA-G
1 TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACATTAAACAAAAGG
92941663 GAT
66 GAT
* * * * * * * *
92941666 TACGGTGTAAGGCCATAACTC-GAATTTGGCAACTAGTGTAGTCCTCCAGGACAATAAACA
1 TAAGGTGTAAGACCATAGCTCAG-CTATGGCAACCAGTGTAGTCCACCAGGACATTAAACA
92941726 CGGGATAGTC
Statistics
Matches: 161, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
66 1 0.01
67 107 0.66
68 53 0.33
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.21
Consensus pattern (68 bp):
TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACATTAAACAAAAGG
GAT
Found at i:92965037 original size:9 final size:9
Alignment explanation
Indices: 92965025--92965085 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 9
92965015 TTTTTTTATT
92965025 TTTTTATAA
1 TTTTTATAA
92965034 TTTTTAAATAA
1 TTTTT--ATAA
*
92965045 TTTTTAATAT
1 TTTTT-ATAA
92965055 TTTTTATAA
1 TTTTTATAA
*
92965064 TTTCTA-AA
1 TTTTTATAA
*
92965072 CTTTTTATAG
1 -TTTTTATAA
92965082 TTTT
1 TTTT
92965086 AGATTTAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
8 2 0.05
9 22 0.51
10 10 0.23
11 9 0.21
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:92965037 original size:10 final size:10
Alignment explanation
Indices: 92965012--92965066 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
92965002 ATATAATTTG
*
92965012 AATTTTTTTT
1 AATTTTTTAT
*
92965022 ATTTTTTTAT
1 AATTTTTTAT
*
92965032 AATTTTTAAAT
1 AATTTTT-TAT
*
92965043 AATTTTTAAT
1 AATTTTTTAT
92965053 -ATTTTTTAT
1 AATTTTTTAT
92965062 AATTT
1 AATTT
92965067 CTAAACTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
9 8 0.21
10 21 0.55
11 9 0.24
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
AATTTTTTAT
Found at i:92965785 original size:21 final size:21
Alignment explanation
Indices: 92965761--92965816 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
92965751 TATATTTTTT
*
92965761 ATTATAATCTATA-ATATAATA
1 ATTATAATATATATAT-TAATA
*
92965782 ATTATTATATATATATTAATA
1 ATTATAATATATATATTAATA
* *
92965803 CTTATAAAATATAT
1 ATTATAATATATAT
92965817 TATATTTTCA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 27 0.93
22 2 0.07
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTATAATATATATATTAATA
Found at i:92966069 original size:21 final size:21
Alignment explanation
Indices: 92966037--92966099 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
92966027 ATATAAATAA
92966037 AATAATAAATATGTAATTATAT
1 AATAA-AAATATGTAATTATAT
*
92966059 AATAAAAATATATAATT-TAT
1 AATAAAAATATGTAATTATAT
** *
92966079 ATATATCATTATGTAATTATA
1 A-ATAAAAATATGTAATTATA
92966100 CAAGGAAACA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 4 0.12
21 23 0.68
22 7 0.21
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (21 bp):
AATAAAAATATGTAATTATAT
Found at i:92966078 original size:22 final size:22
Alignment explanation
Indices: 92966037--92966081 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
92966027 ATATAAATAA
*
92966037 AATAATAAATATGTAATTATAT
1 AATAATAAATATATAATTATAT
92966059 AATAA-AAATATATAATTTATAT
1 AATAATAAATATATAA-TTATAT
92966081 A
1 A
92966082 TATCATTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
AATAATAAATATATAATTATAT
Found at i:92966579 original size:16 final size:17
Alignment explanation
Indices: 92966560--92966592 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
92966550 TAGTTTATAG
92966560 ATTTTA-ATAATTATTA
1 ATTTTATATAATTATTA
*
92966576 ATTTTATATATTTATTA
1 ATTTTATATAATTATTA
92966593 TACATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTATATAATTATTA
Found at i:92967374 original size:18 final size:18
Alignment explanation
Indices: 92967351--92967389 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
92967341 TTATAAAGAA
92967351 AAACTTACGTCTTTACAT
1 AAACTTACGTCTTTACAT
** *
92967369 AAACTTGTGTTTTTACAT
1 AAACTTACGTCTTTACAT
92967387 AAA
1 AAA
92967390 AAATTAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (18 bp):
AAACTTACGTCTTTACAT
Found at i:92968141 original size:7 final size:6
Alignment explanation
Indices: 92968094--92968140 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
92968084 ATAATTTAAT
* *
92968094 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
92968141 ACATATACTA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:92968179 original size:9 final size:9
Alignment explanation
Indices: 92968160--92968227 Score: 84
Period size: 9 Copynumber: 7.6 Consensus size: 9
92968150 ATTTTACAAA
*
92968160 TAATTCCGT
1 TAATTCGGT
*
92968169 TAATTTGGT
1 TAATTCGGT
92968178 TAATTCGGT
1 TAATTCGGT
* *
92968187 TAATTTGGA
1 TAATTCGGT
92968196 TAATTCAGG-
1 TAATTC-GGT
92968205 TAATTCGGT
1 TAATTCGGT
92968214 TAATTCGGT
1 TAATTCGGT
92968223 TAATT
1 TAATT
92968228 TTATACTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
8 2 0.04
9 47 0.92
10 2 0.04
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:92968183 original size:18 final size:18
Alignment explanation
Indices: 92968160--92968228 Score: 95
Period size: 18 Copynumber: 3.8 Consensus size: 18
92968150 ATTTTACAAA
*
92968160 TAATTCCGTTAATTTGGT
1 TAATTCGGTTAATTTGGT
*
92968178 TAATTCGGTTAATTTGGA
1 TAATTCGGTTAATTTGGT
*
92968196 TAATTCAGG-TAATTCGGT
1 TAATTC-GGTTAATTTGGT
92968214 TAATTCGGTTAATTT
1 TAATTCGGTTAATTT
92968229 TATACTTATT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
17 2 0.05
18 40 0.91
19 2 0.05
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.46
Consensus pattern (18 bp):
TAATTCGGTTAATTTGGT
Found at i:92968209 original size:36 final size:36
Alignment explanation
Indices: 92968159--92968228 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
92968149 TATTTTACAA
* * *
92968159 ATAATTCCGTTAATTTGGTTAATTCGGTTAATTTGG
1 ATAATTCAGGTAATTCGGTTAATTCGGTTAATTTGG
92968195 ATAATTCAGGTAATTCGGTTAATTCGGTTAATTT
1 ATAATTCAGGTAATTCGGTTAATTCGGTTAATTT
92968229 TATACTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.19, T:0.46
Consensus pattern (36 bp):
ATAATTCAGGTAATTCGGTTAATTCGGTTAATTTGG
Found at i:92969335 original size:16 final size:16
Alignment explanation
Indices: 92969311--92969344 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
92969301 ATTTCATTAA
92969311 ATAAAAAATTAAAAAT
1 ATAAAAAATTAAAAAT
* *
92969327 ATAATAAATTAAATAT
1 ATAAAAAATTAAAAAT
92969343 AT
1 AT
92969345 TTAAAAACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAAAAATTAAAAAT
Found at i:92971577 original size:114 final size:115
Alignment explanation
Indices: 92971301--92971679 Score: 571
Period size: 115 Copynumber: 3.3 Consensus size: 115
92971291 CCAGATTGAT
* *
92971301 TCTGGTTTAGATTATCATATTTTTTTATTTGGAGTATCTAGGATTTGGATTTGTTAAGCTTAGGC
1 TCTGGTTTAGATTATCATA-TTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGC
92971366 GCTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
65 GCTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
* *
92971417 TCTAGTTTAGATTATCAAATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
*
92971482 CTTTCGTATTTAGAATTTTTGGGATTTAA-TTTTTCATATCCGGACTGGG
66 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
* * * * *
92971531 TCTGGTTTAGATTATCATACTTCTTATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAAGCG
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
* * * * * *
92971596 CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATACCCAGACTGGT
66 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
* * *
92971646 TTTGGTTTAGAATATCATATTTTCTATTTGAAGT
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGT
92971680 TTTCTGAATG
Statistics
Matches: 238, Mismatches: 24, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
114 104 0.44
115 117 0.49
116 17 0.07
ACGTcount: A:0.22, C:0.10, G:0.20, T:0.48
Consensus pattern (115 bp):
TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
Found at i:92971723 original size:115 final size:114
Alignment explanation
Indices: 92971301--92971730 Score: 506
Period size: 115 Copynumber: 3.7 Consensus size: 114
92971291 CCAGATTGAT
* * * * *
92971301 TCTGGTTTAGATTATCATATTTTTTTATTTGGAGTATCTAGGATTTGGATTTGTTAAGCTTAGGC
1 TCTGGTTTAGATTATCATA-TTTTCTATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAGGC
* *
92971366 GCTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
65 GC-TTCATATTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
* * * * *
92971417 TCTAGTTTAGATTATCAAATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
1 TCTGGTTTAGATTATCATATTTTCTATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAGGCG
*
92971482 CTTTCGTATTTAGAATTTTTGGGATTTAA-TTTTTCATATCCGGACTGGG
66 C-TTCATATTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
* *
92971531 TCTGGTTTAGATTATCATA-CTTCTTATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAAGC
1 TCTGGTTTAGATTATCATATTTTC-TATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAGGC
* * * * *
92971595 GCTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATACCCAGACTGGT
65 GCTT-CATATTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
* * * * * * *
92971646 TTTGGTTTAGAATATCATATTTTCTATTTGAAGTTT-TCTGAATGTGGACTTTTTTAATCTCAGG
1 TCTGGTTTAGATTATCATATTTTCTATTTGAAGTTTCT-TGGATTTGGA-TTTGTTAAACTTAGG
** *
92971710 TTCTTCATATTTAGATTTTTT
64 CGCTTCATATTTAGAATTTTT
92971731 AGTTTTGAAT
Statistics
Matches: 277, Mismatches: 31, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
113 4 0.01
114 100 0.36
115 139 0.50
116 34 0.12
ACGTcount: A:0.22, C:0.10, G:0.19, T:0.49
Consensus pattern (114 bp):
TCTGGTTTAGATTATCATATTTTCTATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAGGCG
CTTCATATTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
Found at i:92971723 original size:229 final size:230
Alignment explanation
Indices: 92971301--92971730 Score: 569
Period size: 229 Copynumber: 1.9 Consensus size: 230
92971291 CCAGATTGAT
* * * * *
92971301 TCTGGTTTAGATTATCATATTTTTTTATTTGGAGTATCTAGGATTTGGATTTGTTAAGCTTAGGC
1 TCTGGTTTAGATTATCATATCTTCTTATTTGAAGTATCTAGGATTTGGATTTGTTAAACTTAAGC
* * * * * *
92971366 GCTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGGTCTAGTTTAGATTA
66 GCTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATACCCAGACTGGGTCTAGTTTAGAATA
* * * * *
92971431 TCAAATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCGCTTTCGTATTTAGA
131 TCAAATTTTCTATTTGAAGTATCTTGAATGTGGATTTGTTAAGCTCAGGCGCTTTCATATTTAGA
92971496 ATTTTTGGGATTTAATTTTTCATATCCGGACTGGG
196 ATTTTTGGGATTTAATTTTTCATATCCGGACTGGG
* *
92971531 TCTGGTTTAGATTATCATA-CTTCTTATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAAGC
1 TCTGGTTTAGATTATCATATCTTCTTATTTGAAGTATCTAGGATTTGGATTTGTTAAACTTAAGC
* * *
92971595 GCTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATACCCAGACTGGTTTTGGTTTAGAATA
66 GCTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATACCCAGACTGGGTCTAGTTTAGAATA
* * * * **
92971660 TCATATTTTCTATTTGAAGT-TTTCTGAATGTGGACTTTTTTAATCTCAGGTTC-TTCATATTTA
131 TCAAATTTTCTATTTGAAGTATCT-TGAATGTGGA-TTTGTTAAGCTCAGGCGCTTTCATATTTA
*
92971723 GATTTTTT
194 GAATTTTT
92971731 AGTTTTGAAT
Statistics
Matches: 170, Mismatches: 28, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
228 2 0.01
229 136 0.80
230 32 0.19
ACGTcount: A:0.22, C:0.10, G:0.19, T:0.49
Consensus pattern (230 bp):
TCTGGTTTAGATTATCATATCTTCTTATTTGAAGTATCTAGGATTTGGATTTGTTAAACTTAAGC
GCTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATACCCAGACTGGGTCTAGTTTAGAATA
TCAAATTTTCTATTTGAAGTATCTTGAATGTGGATTTGTTAAGCTCAGGCGCTTTCATATTTAGA
ATTTTTGGGATTTAATTTTTCATATCCGGACTGGG
Found at i:92975537 original size:16 final size:16
Alignment explanation
Indices: 92975518--92975548 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92975508 AAATGATGAA
92975518 TTATTCTATGACTGAG
1 TTATTCTATGACTGAG
*
92975534 TTATTCTATGGCTGA
1 TTATTCTATGACTGA
92975549 ATGTAGATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.45
Consensus pattern (16 bp):
TTATTCTATGACTGAG
Found at i:92975930 original size:22 final size:22
Alignment explanation
Indices: 92975887--92975936 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
92975877 GTGCTTATGG
*
92975887 ATATGAAAGCCCTTTATAGGTA
1 ATATGAAAGCCCTTGATAGGTA
*
92975909 GTATGAAAGCCCTTGA-AGGGTA
1 ATATGAAAGCCCTTGATA-GGTA
92975931 ATATGA
1 ATATGA
92975937 GATTTTGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (22 bp):
ATATGAAAGCCCTTGATAGGTA
Found at i:92978192 original size:36 final size:38
Alignment explanation
Indices: 92978117--92978199 Score: 134
Period size: 38 Copynumber: 2.2 Consensus size: 38
92978107 AATTGTTTTT
*
92978117 CAGAATGTTTTCGGTTGAGGAAAATCCTCTGACTGTTG
1 CAGAATATTTTCGGTTGAGGAAAATCCTCTGACTGTTG
*
92978155 CAGAATATTTTTGGTTGAGGAAAAT-C-CTGACTGTTG
1 CAGAATATTTTCGGTTGAGGAAAATCCTCTGACTGTTG
92978191 CAGAATATT
1 CAGAATATT
92978200 AATCCTCTGC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 19 0.44
37 1 0.02
38 23 0.53
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (38 bp):
CAGAATATTTTCGGTTGAGGAAAATCCTCTGACTGTTG
Found at i:92980844 original size:29 final size:26
Alignment explanation
Indices: 92980812--92980864 Score: 70
Period size: 29 Copynumber: 1.9 Consensus size: 26
92980802 CAACGTCAAT
*
92980812 AAATAATTCAAAAGTTATAAAATAAATTA
1 AAATAAATCAAAA-TTA-AAAA-AAATTA
92980841 AAATAAATCAAAATTAAAAAAAAT
1 AAATAAATCAAAATTAAAAAAAAT
92980865 ATGAAAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 4 0.17
28 3 0.13
29 12 0.52
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (26 bp):
AAATAAATCAAAATTAAAAAAAATTA
Found at i:92984581 original size:23 final size:23
Alignment explanation
Indices: 92984532--92984583 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
92984522 TATTACATAA
* * *
92984532 ATATATACTTATATATACTAGAG
1 ATATATACATATATATACTAAAC
92984555 ATATATACATATATATA-TAAAAC
1 ATATATACATATATATACT-AAAC
92984578 ATATAT
1 ATATAT
92984584 TAAGATTAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 1 0.04
23 24 0.96
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (23 bp):
ATATATACATATATATACTAAAC
Found at i:92988379 original size:18 final size:18
Alignment explanation
Indices: 92988359--92988393 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
92988349 AATTTTAAAA
92988359 AAAATAAAAAAAC-CAAT
1 AAAATAAAAAAACTCAAT
*
92988376 AAAATAAAGAAACTCAAT
1 AAAATAAAAAAACTCAAT
92988394 TCAATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.71, C:0.11, G:0.03, T:0.14
Consensus pattern (18 bp):
AAAATAAAAAAACTCAAT
Found at i:93001333 original size:21 final size:21
Alignment explanation
Indices: 93001309--93001348 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
93001299 GGAATAAATC
93001309 GAAAAC-TTAGAAAATTTTCCA
1 GAAAACATT-GAAAATTTTCCA
93001330 GAAAACATTGAAAATTTTC
1 GAAAACATTGAAAATTTTC
93001349 AACACTGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
GAAAACATTGAAAATTTTCCA
Found at i:93001460 original size:42 final size:42
Alignment explanation
Indices: 93001379--93001460 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
93001369 AAAGTATGAC
* *
93001379 TCACACGGTTAAGAGACACACCCGTGTCTCAGGCTGTGTGAT
1 TCACACGGTTAAGAGACACACCCATGTCTCAGGCCGTGTGAT
* * **
93001421 TCACATGGTTAATAGACACACCCATGTCTTTGGCCGTGTG
1 TCACACGGTTAAGAGACACACCCATGTCTCAGGCCGTGTG
93001461 GGCATTCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (42 bp):
TCACACGGTTAAGAGACACACCCATGTCTCAGGCCGTGTGAT
Found at i:93002818 original size:25 final size:25
Alignment explanation
Indices: 93002764--93002847 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 25
93002754 GTATGGTCAT
* * *
93002764 ACGAGCTGTGAATCGATATGGT-TAC
1 ACGAGCTGTAAATCGGTATGCTCT-C
* *
93002789 TCGAGCTGTAGATCGGTATGCTCTC
1 ACGAGCTGTAAATCGGTATGCTCTC
* *
93002814 ACGAGCTGTAAATTGGTATGCTTTC
1 ACGAGCTGTAAATCGGTATGCTCTC
*
93002839 ATGAGCTGT
1 ACGAGCTGT
93002848 GGGTCAGAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
25 47 0.98
26 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (25 bp):
ACGAGCTGTAAATCGGTATGCTCTC
Found at i:93004652 original size:13 final size:14
Alignment explanation
Indices: 93004623--93004658 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
93004613 AATTTTTAAT
93004623 AAGATAAAAATATTA
1 AAGA-AAAAATATTA
93004638 AAGAAAAAATA-TA
1 AAGAAAAAATATTA
93004651 AAGAAAAA
1 AAGAAAAA
93004659 GAAAATGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.48
14 7 0.33
15 4 0.19
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (14 bp):
AAGAAAAAATATTA
Found at i:93009453 original size:2 final size:2
Alignment explanation
Indices: 93009415--93009441 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
93009405 ATACAAAGGA
93009415 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
93009442 ACAATCTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:93009642 original size:23 final size:23
Alignment explanation
Indices: 93009610--93009653 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
93009600 AAAAATTGAA
*
93009610 ATAAACAAAT-AAAATAGAAATTT
1 ATAAAAAAATGAAAATA-AAATTT
93009633 ATAAAAAAATGAAAATAAAAT
1 ATAAAAAAATGAAAATAAAAT
93009654 GAATTTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (23 bp):
ATAAAAAAATGAAAATAAAATTT
Found at i:93009664 original size:29 final size:29
Alignment explanation
Indices: 93009616--93009673 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
93009606 TGAAATAAAC
93009616 AAATAAAATAGAAATTTATAAAAAAATGA
1 AAATAAAATAGAAATTTATAAAAAAATGA
93009645 AAATAAAAT-G-AATTTATATATAAAAATGA
1 AAATAAAATAGAAATTTATA-A-AAAAATGA
93009674 TAAGTAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 8 0.30
28 2 0.07
29 17 0.63
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.28
Consensus pattern (29 bp):
AAATAAAATAGAAATTTATAAAAAAATGA
Found at i:93011574 original size:13 final size:13
Alignment explanation
Indices: 93011556--93011617 Score: 65
Period size: 13 Copynumber: 4.8 Consensus size: 13
93011546 AGTTTGGCAA
93011556 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
93011569 TGCTTTTGAGAAA-
1 TGCTTTTGA-AAAG
*
93011582 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
* *
93011595 TGTTTTTGAGAAG
1 TGCTTTTGAAAAG
93011608 TGCTTTTGAA
1 TGCTTTTGAA
93011618 CAATTTGGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
12 5 0.12
13 30 0.75
14 5 0.12
ACGTcount: A:0.27, C:0.05, G:0.27, T:0.40
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:93011583 original size:26 final size:26
Alignment explanation
Indices: 93011554--93011617 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
93011544 CTAGTTTGGC
93011554 AATGCTTTTGAAAAGTGCTTTTGAGA
1 AATGCTTTTGAAAAGTGCTTTTGAGA
* *
93011580 AATG-TTGTGGAAAAGTGTTTTTGAGA
1 AATGCTT-TTGAAAAGTGCTTTTGAGA
*
93011606 AGTGCTTTTGAA
1 AATGCTTTTGAA
93011618 CAATTTGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 2 0.06
26 28 0.88
27 2 0.06
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.39
Consensus pattern (26 bp):
AATGCTTTTGAAAAGTGCTTTTGAGA
Found at i:93013270 original size:28 final size:28
Alignment explanation
Indices: 93013237--93013292 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
93013227 TTGCCAAGCT
93013237 TTCAAGTTTTTTGGGTATTCGATCAAAC
1 TTCAAGTTTTTTGGGTATTCGATCAAAC
* *
93013265 TTCAAGTTTTTTGGGTTTTTGATCAAAC
1 TTCAAGTTTTTTGGGTATTCGATCAAAC
93013293 GCTCAGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.46
Consensus pattern (28 bp):
TTCAAGTTTTTTGGGTATTCGATCAAAC
Found at i:93013303 original size:29 final size:28
Alignment explanation
Indices: 93013238--93013303 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
93013228 TGCCAAGCTT
*
93013238 TCAAGTTTTTTGGGTATTCGATCAAACT
1 TCAAGTTTTTTGGGTATTCGATCAAACC
* *
93013266 TCAAGTTTTTTGGGTTTTTGATCAAACGC
1 TCAAGTTTTTTGGGTATTCGATCAAAC-C
93013295 TC-AGTTTTT
1 TCAAGTTTTT
93013304 CATCAAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 32 0.94
29 2 0.06
ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47
Consensus pattern (28 bp):
TCAAGTTTTTTGGGTATTCGATCAAACC
Found at i:93017176 original size:126 final size:126
Alignment explanation
Indices: 93017022--93017253 Score: 340
Period size: 126 Copynumber: 1.8 Consensus size: 126
93017012 ATTCATGCAT
* * * *
93017022 TGAAATTTTAAAAGGATATTTGGCTATTTGGTC-AACGGAAAATCGAAACTCAGCACGTTAGGGC
1 TGAAATTTGAAAAGGATATTTAGCTATTTGGTCAAACGGAAAATCGAAACCCAGCACGTTAGGAC
* *
93017086 ACGATTTCTCAAATTTCCAAACACGAAATATTACCTTGTTTTTTAATTTAAGAAAACATGGA
66 ACAATTTCTCAAATTTCCAAAC-CAAAATATTACCTTGTTTTTTAATTTAAGAAAACATGGA
* * * *
93017148 TGAAATTTGGAAAGGATATTTAGTTATTTGGTCAAACGGAAAATTGAAACCCAGCACGTTATGAC
1 TGAAATTTGAAAAGGATATTTAGCTATTTGGTCAAACGGAAAATCGAAACCCAGCACGTTAGGAC
* *
93017213 ACAATTTCTCGAATTTTCAAACCAAAATATTACCTTGTTTT
66 ACAATTTCTCAAATTTCCAAACCAAAATATTACCTTGTTTT
93017254 GATAAGTTTT
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
126 47 0.51
127 46 0.49
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (126 bp):
TGAAATTTGAAAAGGATATTTAGCTATTTGGTCAAACGGAAAATCGAAACCCAGCACGTTAGGAC
ACAATTTCTCAAATTTCCAAACCAAAATATTACCTTGTTTTTTAATTTAAGAAAACATGGA
Found at i:93017750 original size:16 final size:18
Alignment explanation
Indices: 93017720--93017765 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
93017710 GAAATCAATT
*
93017720 ATAAAATAAAAATAA-AA
1 ATAAAATATAAATAATAA
*
93017737 ATAAAA-ATAAATAATAC
1 ATAAAATATAAATAATAA
93017754 ATAAAATATAAA
1 ATAAAATATAAA
93017766 CTTCAACATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 13 0.52
18 5 0.20
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (18 bp):
ATAAAATATAAATAATAA
Found at i:93017760 original size:12 final size:11
Alignment explanation
Indices: 93017720--93017761 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
93017710 GAAATCAATT
93017720 ATAAAATAAAA
1 ATAAAATAAAA
93017731 ATAAAAATAAAA
1 AT-AAAATAAAA
*
93017743 AT-AAATAATAC
1 ATAAAATAA-AA
93017754 ATAAAATA
1 ATAAAATA
93017762 TAAACTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
10 6 0.22
11 5 0.19
12 16 0.59
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:93017765 original size:7 final size:6
Alignment explanation
Indices: 93017722--93017752 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
93017712 AATCAATTAT
93017722 AAAATA AAAATA AAAATA AAAATA AATAATA
1 AAAATA AAAATA AAAATA AAAATA AA-AATA
93017753 CATAAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:93020977 original size:35 final size:35
Alignment explanation
Indices: 93020938--93021009 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
93020928 AAAAAAATGT
*
93020938 AAATAAATTAATATGCTGATGTGTTTCTCAAATTG
1 AAATAAATTAATATGCTGATGTGTTACTCAAATTG
93020973 AAATAAATTAATATGCTGATGTGTTACTCAAATTG
1 AAATAAATTAATATGCTGATGTGTTACTCAAATTG
93021008 AA
1 AA
93021010 TGTCTTCTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (35 bp):
AAATAAATTAATATGCTGATGTGTTACTCAAATTG
Found at i:93021168 original size:2 final size:2
Alignment explanation
Indices: 93021163--93021188 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
93021153 ATATAGCTTA
93021163 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
93021189 TAATTTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93021361 original size:127 final size:130
Alignment explanation
Indices: 93021084--93021433 Score: 508
Period size: 128 Copynumber: 2.7 Consensus size: 130
93021074 TTCTTACGTC
* *
93021084 ACTCAAATTGGATGTCTATTTGCCATAAATATAAGGATGTCATGTTGGAATGTTTCTTTAGTTAG
1 ACTCAAATTGGATGTCTATTTGTCATAAATAT-AGGATGTCATGTTGGAATGTTTCTTTAATTAG
* *
93021149 TAGTATATAGCTTAATATATATATATATATATATATATATTAATTTTCTTACTTCACGATGTTGA
65 TAG--TATAGCTT-ATA-ATATATATATATATATATATAGT-ATTTTCTTACGTCACGATGTTGA
*
93021214 TTTGTT
125 TGTGTT
* *
93021220 ACTCAAATTGGATGTCTATTTGTGATAAATATAGGATGTCATGTTGGAATGTTTCTTTACTTAGT
1 ACTCAAATTGGATGTCTATTTGTCATAAATATAGGATGTCATGTTGGAATGTTTCTTTAATTAGT
* *
93021285 AGTATAGCTTATAATATATATATGTATATCT-TAGT-TTTT-TTACGTCACGATGTTGATGTGTT
66 AGTATAGCTTATAATATATATATATATATATATAGTATTTTCTTACGTCACGATGTTGATGTGTT
* * *
93021347 ACTCAAATTGGATGTCTATTAGTCATAAATATATGGATTTCATGTTGGAATGTTTCTTTAATTAT
1 ACTCAAATTGGATGTCTATTTGTCATAAATATA-GGATGTCATGTTGGAATGTTTCTTTAATTAG
93021412 TAGTATAGCTTATAATATATAT
65 TAGTATAGCTTATAATATATAT
93021434 TAGTTTTTTT
Statistics
Matches: 200, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
127 52 0.26
128 54 0.27
130 3 0.01
131 16 0.08
132 3 0.01
133 8 0.04
135 34 0.17
136 30 0.15
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (130 bp):
ACTCAAATTGGATGTCTATTTGTCATAAATATAGGATGTCATGTTGGAATGTTTCTTTAATTAGT
AGTATAGCTTATAATATATATATATATATATATAGTATTTTCTTACGTCACGATGTTGATGTGTT
Found at i:93022012 original size:30 final size:30
Alignment explanation
Indices: 93021978--93022040 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
93021968 ACTTAACAAG
*
93021978 CAAATGCTTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
*
93022008 CAAATGCCTCTAAAATAATAAGAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
93022038 CAA
1 CAA
93022041 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.13, G:0.05, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:93032229 original size:419 final size:416
Alignment explanation
Indices: 93031292--93032437 Score: 1141
Period size: 419 Copynumber: 2.7 Consensus size: 416
93031282 GTACGCTCAG
* * * * **
93031292 ATAAATAAGGT-GAA-ACATATTTGGTATTGCTTTTCTCAAAAGGAATCGAAAAACAAAGCCGAA
1 ATAAAGAAGGTGGAACACA-ATTT-GTATTGCTCTTCTCGAAAGGAATAG-AAAACAAAGAAGAA
* * * *
93031355 AATGTAGTCAGAAATTTGAATGAAAATTTTCTAAAAAGAAAACAGACGAGAGAAAAGGAGAATGA
63 AATGTAGT-AGAAATTTGATTGAAAA-TTGCT-AAAAGAAAACAGACAAGAGAAAAGTAGAATGA
* * *
93031420 GAGAAAGATTGTTGTTTCCTTGTTATGTAAAATGAGGAAAATGATCTGCTATTTATACGGTTTTC
125 GAGAAAGATTGTTGTTTGCTTGTTATGTAAAATGAGGAAAATGA-CTGCTATTTATACTGTTTTA
* ** * * *
93031485 TTAAGGGGTAAAACAATAAAACACGCAATGTCTGTTTCCT-AAAAAATGCAACTGA-TCAAATTT
189 TGAAGGGGTAAAATGATAAAACACACAATGTCAGTTTCCTCAAAAAATGCAACTGACT-AGATTT
* * * * *
93031548 TCTACAACAG-T-CATGATTTTCC-ACAACTAAAAATATTTTGAAAATAATTTCAAAAAGAAAAA
253 TCTACAATAGTTAAAGGATTTTCCGA-AACTGAAAATATTCTG-AAATAATTTCAAAAAGAAAAA
*
93031610 CATAAATTTTATCCAAAAGAAAATACACGTGGTACGTAGACATGTGTTAACAAGGACACGAACAC
316 CATAAATTTTATCCAAAAGAAAATACACGTGGTACGTAGACACGTGTTAACAAGGACACGAACAC
* * * *
93031675 AGATTGGGTTGGGCCGGGCAGCGGTTCATACACCAGA
381 AGAATAGGTTCGG-CGGGCAGCGGCTCATACACCAGA
* * *
93031712 ATAAAGGAGGTGGAACACAA-TTGTTATTACTCTTCTCGAAAGGAATCAGAAAACAAAGTAGAAA
1 ATAAAGAAGGTGGAACACAATTTG-TATTGCTCTTCTCGAAAGGAAT-AGAAAACAAAGAAGAAA
* * * ** *
93031776 ATGTAGTAAAAAATTTAATTTAAAAACCGCTAAAAGAAAACAAACAAGAGAAAAGTAGAATGAGA
64 ATGTAGT-AGAAATTTGA-TTGAAAATTGCTAAAAGAAAACAGACAAGAGAAAAGTAGAATGAGA
* * * *
93031841 GAAGGATTGTTGTTTGTTTGTTATGTAAAATAAGGAAAATGACATACTATTTATACTGTTTTATG
127 GAAAGATTGTTGTTTGCTTGTTATGTAAAATGAGGAAAATGAC-TGCTATTTATACTGTTTTATG
* * * * *
93031906 AAGGGGTAAAATGGTAAAATACACAATGCCAATTTCCTCAAAAAATGCAATTGACTAGATTTTCC
191 AAGGGGTAAAATGATAAAACACACAATGTCAGTTTCCTCAAAAAATGCAACTGACTAGATTTT-C
* * *
93031971 T-TAATAGTTAAAGGATTTTCCGAAATTGAAAATATTCTGACAATAATTT-ACAAAGAAAAA-AT
255 TACAATAGTTAAAGGATTTTCCGAAACTGAAAATATTCTGA-AATAATTTCAAAAAGAAAAACAT
* ** * * * *
93032033 AGAAATTTTATCCAAAAAGAAACATGCTGGTATGTACCGTAGACACGTGTTAACATGGGCGC-AG
319 --AAATTTTATCC-AAAAGAAA-ATACACGT-GGTA-CGTAGACACGTGTTAACAAGGACACGA-
* *
93032097 ACAC-GAATAGG-TCGG-GTG-A-CGGCTCGTACACTC-GA
377 ACACAGAATAGGTTCGGCGGGCAGCGGCTCATACAC-CAGA
* * *
93032132 ATAAAGAAGGTGGAACACAATTTGTATTGCTCTTCCCGAAAGGGATTGAAAAGCAAAGAAGAAAA
1 ATAAAGAAGGTGGAACACAATTTGTATTGCTCTTCTCGAAAGGAATAGAAAA-CAAAGAAGAAAA
93032197 TGTAGTAGGAAATTTGATTGAAAATTGCTAAAA-AGAAACAGACAAGAGAAAA-TGAGAATGAGA
65 TGTAGTA-GAAATTTGATTGAAAATTGCTAAAAGA-AAACAGACAAGAGAAAAGT-AGAATGAGA
* * * * *
93032260 GAAAGAATGTTGTTTGCTTGTTATGTTAAATGAGGAAAATGACCTGCTATTTTTATTATTTTCA-
127 GAAAGATTGTTGTTTGCTTGTTATGTAAAATGAGGAAAATGA-CTGCTATTTATACTGTTTT-AT
* * * * *
93032324 GAAGGGGCAAAATGACAAAACA-AGCAATTTTAGTTTCCTCAAAATATGCAACTGACTAGAATTT
190 GAAGGGGTAAAATGATAAAACACA-CAATGTCAGTTTCCTCAAAAAATGCAACTGACTAG-ATTT
* * * *
93032388 T-TACAATAGTCAGAGGATTTTCCGCAACTGAAAATATTCTGAAAAAATTT
253 TCTACAATAGTTAAAGGATTTTCCGAAACTGAAAATATTCTGAAATAATTT
93032438 TATCCAAAAA
Statistics
Matches: 599, Mismatches: 96, Indels: 64
0.79 0.13 0.08
Matches are distributed among these distances:
418 12 0.02
419 293 0.49
420 167 0.28
421 30 0.05
422 46 0.08
423 9 0.02
424 8 0.01
425 9 0.02
426 25 0.04
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (416 bp):
ATAAAGAAGGTGGAACACAATTTGTATTGCTCTTCTCGAAAGGAATAGAAAACAAAGAAGAAAAT
GTAGTAGAAATTTGATTGAAAATTGCTAAAAGAAAACAGACAAGAGAAAAGTAGAATGAGAGAAA
GATTGTTGTTTGCTTGTTATGTAAAATGAGGAAAATGACTGCTATTTATACTGTTTTATGAAGGG
GTAAAATGATAAAACACACAATGTCAGTTTCCTCAAAAAATGCAACTGACTAGATTTTCTACAAT
AGTTAAAGGATTTTCCGAAACTGAAAATATTCTGAAATAATTTCAAAAAGAAAAACATAAATTTT
ATCCAAAAGAAAATACACGTGGTACGTAGACACGTGTTAACAAGGACACGAACACAGAATAGGTT
CGGCGGGCAGCGGCTCATACACCAGA
Found at i:93032787 original size:391 final size:390
Alignment explanation
Indices: 93032114--93032816 Score: 916
Period size: 391 Copynumber: 1.8 Consensus size: 390
93032104 TAGGTCGGGT
* * * * * *
93032114 GACGGCTCGTACACTCGAATAAAGAAGGTGGAACACAATTTGTATTGCTCTTCCCGAAAGGGATT
1 GACGGCTCATACACTCGAATAAAGAAGATGGAACACAATTGGTATTACTCTTCCCAAAAGGAATT
* * * ** *
93032179 GAAAAGCAAAGAAGAAAATGTAGTAGGAAATTTGATTGAAAATTGCTAAAAAGAAACAGACAAGA
66 GAAAAGCAAAGAAAAAAATGCAGTAGAAAATTTGATAAAAAATTGCTAAAAAGAAACAAACAAGA
* * * * *
93032244 GAAAATGAGAATGAGAGAAAGAATGTTGTTTGCTTGTTATGTTAAATGAGGAAAATGACCTGCTA
131 GAAAAGGAGAATGAGAGAAAGAATATTGTTTGCTTATTATGTAAAATGAGGAAAATGACCTCCTA
* * * * *
93032309 TTTTTATTATTTTCAGAAGGGGCAAAATGACAAAACAAGCAATTTTAGTTTCCTCAAAATATGCA
196 TTTATATTATTTTCAGAAGGGACAAAACGACAAAACAAGCAATGTTAGTTTCCTCAAAAAATGCA
* *
93032374 ACTGACTAGAATTTTTACAATAGTCAGAGGATTTTCCGCAACTGAAAATATTCTGAAAAAATTTT
261 ACTGACCAGAATTTTTACAATAGTCAGAGGATTTTCCGCAACTAAAAATATTCTGAAAAAATTTT
93032439 ATCCAAAAAAAAAACATGCACACATGTTAACACAGACACAGACACAGACACAAACCAGGCCGAGC
326 ATCCAAAAAAAAAACATGCACACATGTTAACACAGACACAGACACAGACACAAACCAGGCCGAGC
* * * * *
93032504 GACGGTTCATACACTCGAATAAAGAAGATGGAATACAATTGGTATTATTGTTCTCAAAAGGAATT
1 GACGGCTCATACACTCGAATAAAGAAGATGGAACACAATTGGTATTACTCTTCCCAAAAGGAATT
*
93032569 AGAAAA-CAAA-ACAAAAAATGCAGTTGAAAATTTGACTAAAAAATTGCTAAAAAGAAAACAAAC
66 -GAAAAGCAAAGA-AAAAAATGCAGTAGAAAATTTGA-TAAAAAATTGCTAAAAAG-AAACAAA-
* * **
93032632 CAA-AGAAAAGGAGAATGAGAGAAAGATTATTGTTTGCTTATTATGTAAAATGAGGAAAATTATT
126 CAAGAGAAAAGGAGAATGAGAGAAAGAATATTGTTTGCTTATTATGTAAAATGAGGAAAATGACC
* ** *
93032696 TCCTATTTATATT-TTTTCCA-AAGGGACAACACGGTAAAACACA-CAGTGTTAGTTTCCTCAAA
191 TCCTATTTATATTATTTT-CAGAAGGGACAAAACGACAAAACA-AGCAATGTTAGTTTCCTCAAA
* * *
93032758 AAATTCAATTGACCAG-ATTTTTCACAATAGTTAGAGGATTTTCCGCAACTAAAAATATT
254 AAATGCAACTGACCAGAATTTTT-ACAATAGTCAGAGGATTTTCCGCAACTAAAAATATT
93032817 TAATAAAAAC
Statistics
Matches: 264, Mismatches: 41, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
389 1 0.00
390 83 0.31
391 104 0.39
392 73 0.28
393 3 0.01
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (390 bp):
GACGGCTCATACACTCGAATAAAGAAGATGGAACACAATTGGTATTACTCTTCCCAAAAGGAATT
GAAAAGCAAAGAAAAAAATGCAGTAGAAAATTTGATAAAAAATTGCTAAAAAGAAACAAACAAGA
GAAAAGGAGAATGAGAGAAAGAATATTGTTTGCTTATTATGTAAAATGAGGAAAATGACCTCCTA
TTTATATTATTTTCAGAAGGGACAAAACGACAAAACAAGCAATGTTAGTTTCCTCAAAAAATGCA
ACTGACCAGAATTTTTACAATAGTCAGAGGATTTTCCGCAACTAAAAATATTCTGAAAAAATTTT
ATCCAAAAAAAAAACATGCACACATGTTAACACAGACACAGACACAGACACAAACCAGGCCGAGC
Found at i:93038719 original size:22 final size:23
Alignment explanation
Indices: 93038691--93038733 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
93038681 TTTATTTTAA
*
93038691 TTAAATAATAT-TTATTTTTATG
1 TTAAATAATATATTATGTTTATG
*
93038713 TTAAATATTATATTATGTTTA
1 TTAAATAATATATTATGTTTA
93038734 ATTTTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAAATAATATATTATGTTTATG
Found at i:93043121 original size:23 final size:23
Alignment explanation
Indices: 93043089--93043132 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
93043079 CCCGTAATCC
*
93043089 CTAAACCTTAAACCCCAACCCCT
1 CTAAAACTTAAACCCCAACCCCT
*
93043112 CTAAAACTTAAACCCTAACCC
1 CTAAAACTTAAACCCCAACCC
93043133 TTAACCCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.43, G:0.00, T:0.18
Consensus pattern (23 bp):
CTAAAACTTAAACCCCAACCCCT
Found at i:93043135 original size:14 final size:14
Alignment explanation
Indices: 93043122--93043172 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
93043112 CTAAAACTTA
93043122 AACCC-TAACCCTT
1 AACCCATAACCCTT
*
93043135 AACCCATAACCCAT
1 AACCCATAACCCTT
*
93043149 AACCCATAATCCCTA
1 AACCCATAA-CCCTT
93043164 AACCCATAA
1 AACCCATAA
93043173 TCCATATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
13 5 0.15
14 16 0.48
15 12 0.36
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (14 bp):
AACCCATAACCCTT
Found at i:93043167 original size:29 final size:27
Alignment explanation
Indices: 93043123--93043178 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 27
93043113 TAAAACTTAA
*
93043123 ACCCTAACCCTTAACCCATAACCCATA
1 ACCCTAACCCTAAACCCATAACCCATA
*
93043150 ACCCATAATCCCTAAACCCATAATCCATA
1 ACCC-TAA-CCCTAAACCCATAACCCATA
93043179 TAAACCTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.16
28 3 0.12
29 18 0.72
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (27 bp):
ACCCTAACCCTAAACCCATAACCCATA
Found at i:93043724 original size:40 final size:41
Alignment explanation
Indices: 93043621--93043809 Score: 247
Period size: 41 Copynumber: 4.6 Consensus size: 41
93043611 TTAATTTTTT
* * *
93043621 GCGGCGTTTTTTCAAAAGCGCCACTAAAACCTCGATCAATA
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTCGAGCAATA
*
93043662 GTGGCGTTTTTTCAAAAAGCGCCGCTAAAAACT-GAGCAATA
1 GCGGCGTTTTTTC-AAAAGCGCCGCTAAAAACTCGAGCAATA
* *
93043703 GCGGCGTTTTTCCAAAAGCGCCGCTAAAAACT-GAGCACTA
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTCGAGCAATA
* * * * * *
93043743 GCGACGTTTTTTAAAAAGCGCAGCTAAAAGCTCGATCTATA
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTCGAGCAATA
93043784 GCGGCGTTTTTTCAAAAGCGCCGCTA
1 GCGGCGTTTTTTCAAAAGCGCCGCTA
93043810 TTATTTAGTT
Statistics
Matches: 128, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 53 0.41
41 58 0.45
42 17 0.13
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (41 bp):
GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTCGAGCAATA
Found at i:93043800 original size:81 final size:82
Alignment explanation
Indices: 93043621--93043809 Score: 256
Period size: 81 Copynumber: 2.3 Consensus size: 82
93043611 TTAATTTTTT
* * * * * *
93043621 GCGGCGTTTTTTCAAAAGCGCCACTAAAACCTCGATCAATAGTGGCGTTTTTTCAAAAAGCGCCG
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTCGAGCAATAGCGACGTTTTTTCAAAAAGCGCAG
93043686 CTAAAAACTGAGCAATA
66 CTAAAAACTGAGCAATA
* *
93043703 GCGGCGTTTTTCCAAAAGCGCCGCTAAAAACT-GAGCACTAGCGACGTTTTTT-AAAAAGCGCAG
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTCGAGCAATAGCGACGTTTTTTCAAAAAGCGCAG
* * *
93043766 CTAAAAGCTCGATCTATA
66 CTAAAAACT-GAGCAATA
93043784 GCGGCGTTTTTTCAAAAGCGCCGCTA
1 GCGGCGTTTTTTCAAAAGCGCCGCTA
93043810 TTATTTAGTT
Statistics
Matches: 94, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 18 0.19
81 47 0.50
82 29 0.31
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (82 bp):
GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTCGAGCAATAGCGACGTTTTTTCAAAAAGCGCAG
CTAAAAACTGAGCAATA
Found at i:93043826 original size:40 final size:40
Alignment explanation
Indices: 93043782--93043894 Score: 113
Period size: 41 Copynumber: 2.8 Consensus size: 40
93043772 GCTCGATCTA
* * *
93043782 TAGCGGCGTTTTTTCAAAAGCGCCGCTATT-ATTTAGTTTT
1 TAGCGGCGTTTTATCAAAAACGCCGCTATTGATCTA-TTTT
* * *
93043822 TAGCGGCATTTTGA-CTAAAAACGCCACTATTGCTCTATTTT
1 TAGCGGCGTTTT-ATC-AAAAACGCCGCTATTGATCTATTTT
*
93043863 TAGCGGCGTTTGGATCAAAAACGCCGCTATTG
1 TAGCGGCGTTT-TATCAAAAACGCCGCTATTG
93043895 CTCAGTTTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
40 12 0.20
41 43 0.73
42 4 0.07
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (40 bp):
TAGCGGCGTTTTATCAAAAACGCCGCTATTGATCTATTTT
Found at i:93043863 original size:41 final size:41
Alignment explanation
Indices: 93043816--93043915 Score: 123
Period size: 41 Copynumber: 2.4 Consensus size: 41
93043806 GCTATTATTT
93043816 AGTTTTTAGCGGCATTTTGA-CTAAAAACGCCACTATTGCTC
1 AGTTTTTAGCGGCATTTTGATC-AAAAACGCCACTATTGCTC
* * *
93043857 TA-TTTTTAGCGGCGTTTGGATCAAAAACGCCGCTATTGCTC
1 -AGTTTTTAGCGGCATTTTGATCAAAAACGCCACTATTGCTC
* *
93043898 AGTTTTTTGCGACATTTT
1 AGTTTTTAGCGGCATTTT
93043916 AATGCAAACG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
40 1 0.02
41 46 0.94
42 2 0.04
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (41 bp):
AGTTTTTAGCGGCATTTTGATCAAAAACGCCACTATTGCTC
Found at i:93045158 original size:16 final size:15
Alignment explanation
Indices: 93045124--93045180 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 15
93045114 ATGGCATTAG
93045124 TCATGTAATACTCAAT
1 TCATG-AATACTCAAT
*
93045140 TCATGAATACATCATT
1 TCATGAATAC-TCAAT
93045156 TCAT-ACCATACTCAAT
1 TCATGA--ATACTCAAT
93045172 TCATGAATA
1 TCATGAATA
93045181 TATAACTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
15 9 0.26
16 21 0.60
17 5 0.14
ACGTcount: A:0.39, C:0.21, G:0.05, T:0.35
Consensus pattern (15 bp):
TCATGAATACTCAAT
Found at i:93045926 original size:13 final size:13
Alignment explanation
Indices: 93045898--93045938 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
93045888 AAACTCTAAA
*
93045898 TTTCTCCTTTCTT
1 TTTCTTCTTTCTT
93045911 TTTCTTTCTTTCTT
1 TTTC-TTCTTTCTT
93045925 TTTCTTCTTTCTT
1 TTTCTTCTTTCTT
93045938 T
1 T
93045939 CCCCTGTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 14 0.54
14 12 0.46
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTCTTCTTTCTT
Found at i:93048627 original size:18 final size:18
Alignment explanation
Indices: 93048604--93048666 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 18
93048594 AAAAAGGGTT
93048604 CACATACAAGAGGGTTCA
1 CACATACAAGAGGGTTCA
* * *
93048622 CACATACTAGGGGGTTCT
1 CACATACAAGAGGGTTCA
* * *
93048640 CACATGCTA-AGGGTTCG
1 CACATACAAGAGGGTTCA
*
93048657 CACATGCAAG
1 CACATACAAG
93048667 GGTCTTGCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
17 14 0.38
18 23 0.62
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (18 bp):
CACATACAAGAGGGTTCA
Found at i:93048678 original size:17 final size:17
Alignment explanation
Indices: 93048614--93048669 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 17
93048604 CACATACAAG
* *
93048614 AGGGTTCACACATACTA
1 AGGGTTCGCACATGCTA
* *
93048631 GGGGGTTCTCACATGCTA
1 -AGGGTTCGCACATGCTA
93048649 AGGGTTCGCACATGC-A
1 AGGGTTCGCACATGCTA
93048665 AGGGT
1 AGGGT
93048670 CTTGCACATA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
16 6 0.18
17 13 0.39
18 14 0.42
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.23
Consensus pattern (17 bp):
AGGGTTCGCACATGCTA
Found at i:93049648 original size:28 final size:28
Alignment explanation
Indices: 93049593--93049654 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
93049583 ACCAACTTGG
* *
93049593 GAAAAAATAGTTTAGGTACCACTAATGA
1 GAAAAAAAAGTTTAGGGACCACTAATGA
* *
93049621 TAAAAAAAAGGTTTAGGGACCA-TGATGA
1 GAAAAAAAA-GTTTAGGGACCACTAATGA
93049649 GAAAAA
1 GAAAAA
93049655 TGGTATAGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
28 17 0.61
29 11 0.39
ACGTcount: A:0.50, C:0.08, G:0.21, T:0.21
Consensus pattern (28 bp):
GAAAAAAAAGTTTAGGGACCACTAATGA
Found at i:93051613 original size:17 final size:18
Alignment explanation
Indices: 93051563--93051613 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
93051553 CCCGATTACA
93051563 TCAAAACCCAACTAAACC
1 TCAAAACCCAACTAAACC
93051581 TCAAAACCCAACTAAACC
1 TCAAAACCCAACTAAACC
*
93051599 TCTAAACCC-ACTAAA
1 TCAAAACCCAACTAAA
93051614 ACCCTTAACC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 6 0.19
18 26 0.81
ACGTcount: A:0.49, C:0.37, G:0.00, T:0.14
Consensus pattern (18 bp):
TCAAAACCCAACTAAACC
Found at i:93052055 original size:17 final size:16
Alignment explanation
Indices: 93052033--93052073 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
93052023 CCTAAAGGTG
*
93052033 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTT-TT
93052050 ATTTTACTCTTATTTTT
1 ATTTTA-TCTTATTTTT
93052067 ATTTTAT
1 ATTTTAT
93052074 TTTTTTCCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 14 0.64
18 7 0.32
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTATCTTATTTTT
Found at i:93052802 original size:11 final size:11
Alignment explanation
Indices: 93052778--93052820 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
93052768 TTCTAATACG
*
93052778 TATATATATTA
1 TATATATTTTA
*
93052789 TATGTATTTTA
1 TATATATTTTA
* *
93052800 TATATATTATG
1 TATATATTTTA
93052811 TATATATTTT
1 TATATATTTT
93052821 TTAATGCCAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATATATTTTA
Found at i:93065210 original size:73 final size:73
Alignment explanation
Indices: 93065135--93066037 Score: 557
Period size: 73 Copynumber: 11.7 Consensus size: 73
93065125 TGATGTTTTT
*
93065135 ATTTCTGTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
1 ATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
**
93065200 TATTTTTT
66 TATTTTCA
*
93065208 ATTTCTGTTTCAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACATTGAG
1 ATTTCTGTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAG
93065273 GTATTTTCA
65 GTATTTTCA
* * * ** *
93065282 ATTTCTACTTTTTAAAAAAATCAACTCATGTTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
1 ATTTCT--GTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGA
93065347 GGTATTTTCA
64 GGTATTTTCA
93065357 ATTTCTG-TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
1 ATTTCTGTTTC-A---A--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
**
93065421 GACACGCTGAGGTATTTTCA
54 GACACATTGAGGTATTTTCA
*** *** * **
93065441 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGG
1 ATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
*
93065506 TATTGTCA
66 TATTTTCA
* * * * ** *
93065514 ATTTTTGTGTTTAAATCTATTTTTCAAAAATCAATTCATATTACGAGAAATGAGTTGAGCCTCAG
1 A--TTTCTG-TT---TC-A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
** *
93065579 GACACGCTGAGGTAATTTCA
54 GACACATTGAGGTATTTTCA
*** * **
93065599 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCATGTTGAGG
1 ATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
*
93065664 TAATTTCA
66 TATTTTCA
** * * * * *
93065672 ATTTCTGCTTTTCAATTTATATCTTTCAAAAAAAATCA-ACT-C-ATACCGCGAGAGGTGAG--T
1 ATTTCTG--TTTCAA---A-A------AAATCAACTCATATTGCGAGA--G-GTGAGTTGAGCCT
** * * * * **
93065732 TGAGCCTCA-GGACACGCTGA-GGT-A
51 CAAGACACATTG--A-GGT-ATTTTCA
* ** * *
93065756 ATTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGACCCTCAGGACAC
1 A------TTTCTGTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
** *
93065821 GCTGAGGTAATTTCA
59 ATTGAGGTATTTTCA
** *
93065836 ATTTCTGTTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
1 ATTTCTG-TTTC-AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTG
93065901 AGGTATTTTCA
63 AGGTATTTTCA
* * *
93065912 ATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCT
1 ATTTCTG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACAT--T
93065976 GAGGTATTTTCA
62 GAGGTATTTTCA
*
93065988 ATTTCTGTCTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 ATTTCTGT-TT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
93066038 TTCAGATCAC
Statistics
Matches: 658, Mismatches: 102, Indels: 136
0.73 0.11 0.15
Matches are distributed among these distances:
72 2 0.00
73 129 0.20
74 105 0.16
75 88 0.13
76 91 0.14
77 36 0.05
78 2 0.00
79 20 0.03
80 5 0.01
81 5 0.01
82 8 0.01
83 10 0.02
84 69 0.10
85 75 0.11
86 2 0.00
88 2 0.00
89 3 0.00
90 6 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (73 bp):
ATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
TATTTTCA
Found at i:93065577 original size:158 final size:156
Alignment explanation
Indices: 93065222--93066037 Score: 877
Period size: 158 Copynumber: 5.2 Consensus size: 156
93065212 CTGTTTCAAA
* **
93065222 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* * * ** * *
93065287 TACTTTTTAAAAAAATCAACTCATGTTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
66 T-GTTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-
*
93065352 TTTCAATTTCTG--TTCAATTTATGTTTTTC
128 TTTCAATTTCTGTTTTAAATTTA--TTTTTC
93065381 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
** *
93065446 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGTATTG
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT-
* *
93065511 TCAATTTTTGTGTTTAAATCTATTTTTC
130 TCAATTTCTGT-TTTAAATTTATTTTTC
* * ** * *
93065539 AAAAATCAATTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* * *
93065604 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CATGTTGAGGTAAT
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGT-AT
*
93065668 TTCAATTTCTGCTTTTCAATTTATATCTTTC
129 TTCAATTTCTG-TTTTAAATTTAT-T-TTTC
** * *
93065699 AAAAAAAATCAACTCATACCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAAT
** ** *
93065764 TTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGACCCTCAGGACACGCTGAGGT
63 TTCTGTT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
93065829 AATTTCAATTTCTGTTTTCAAA---A------
127 -ATTTCAATTTCTGTTTT-AAATTTATTTTTC
* ** *
93065852 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* *
93065917 TG-TTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGG
66 TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGG
*
93065980 TATTTTCAATTTCTGTCTTAAA---A------
126 TA-TTTCAATTTCTGTTTTAAATTTATTTTTC
93066003 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
93066038 TTCAGATCAC
Statistics
Matches: 572, Mismatches: 64, Indels: 50
0.83 0.09 0.07
Matches are distributed among these distances:
148 2 0.00
149 3 0.01
150 93 0.16
151 37 0.06
152 26 0.05
156 2 0.00
157 55 0.10
158 141 0.25
159 70 0.12
160 11 0.02
161 1 0.00
163 70 0.12
164 61 0.11
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (156 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
CAATTTCTGTTTTAAATTTATTTTTC
Found at i:93065896 original size:76 final size:75
Alignment explanation
Indices: 93065681--93066042 Score: 480
Period size: 76 Copynumber: 4.8 Consensus size: 75
93065671 AATTTCTGCT
* * **
93065681 TTTCAATTTATATCTTTCAAAAAAAATCAACTCATACCGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTCAATTTCTGT-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
93065746 CGCTGAGGTAA
65 CGCTGAGGTAA
** *
93065757 TTTCAATTTCTGTTGTT--AAAAAAATCAACTCATATTGCGAGAAATGAGTTGACCCTCAGGACA
1 TTTCAATTTCTGTT-TTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
93065820 CGCTGAGGTAA
65 CGCTGAGGTAA
** *
93065831 TTTCAATTTCTGTTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTCAATTTCTGTTTTCAAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
93065896 CGTTGAGGTAT
65 CGCTGAGGTAA
*
93065907 TTTCAATTTCTGTTTTC-AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCA
1 TTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---A
* *
93065970 CATGCTGAGGTAT
63 CACGCTGAGGTAA
* * *
93065983 TTTCAATTTCTGTCTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
93066043 ATCACACACT
Statistics
Matches: 256, Mismatches: 21, Indels: 16
0.87 0.07 0.05
Matches are distributed among these distances:
73 3 0.01
74 96 0.38
75 15 0.06
76 103 0.40
77 38 0.15
78 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (75 bp):
TTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAA
Found at i:93065955 original size:150 final size:149
Alignment explanation
Indices: 93065681--93066037 Score: 493
Period size: 150 Copynumber: 2.4 Consensus size: 149
93065671 AATTTCTGCT
* * ** *
93065681 TTTCAATTTATATCTTTCAAAAAAAATCAACTCATACCGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTCAATTTCTGT-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
93065746 CGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGACC
65 CGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGACC
93065811 CTCAGG-ACACGCTGAGGTAA
130 CTC-GGTACACGCTGAGGTAA
**
93065831 TTTCAATTTCTGTTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTCAATTTCTGTTTTCAAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * * ** *
93065896 CGTTGAGGTATTTTCAATTTCTGTT-TTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAG
65 CGCTGAGGTAATTTCAATTTCTGTTGTT-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAC
* *
93065960 CCTCGGTTCACATGCTGAGGTAT
129 CCTCGG-T-ACACGCTGAGGTAA
* *
93065983 TTTCAATTTCTGTCTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
93066038 TTCAGATCAC
Statistics
Matches: 183, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
149 16 0.09
150 104 0.57
151 28 0.15
152 35 0.19
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (149 bp):
TTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGACCC
TCGGTACACGCTGAGGTAA
Found at i:93067129 original size:17 final size:17
Alignment explanation
Indices: 93067107--93067145 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
93067097 CCTAAAGGTG
*
93067107 ATTTTA-TCTTCTTTATT
1 ATTTTACTCTTATTT-TT
93067124 ATTTTACTCTTATTTTT
1 ATTTTACTCTTATTTTT
93067141 ATTTT
1 ATTTT
93067146 TATTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTACTCTTATTTTT
Found at i:93067359 original size:11 final size:11
Alignment explanation
Indices: 93067345--93067379 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
93067335 TCCCTTTCCC
93067345 CTCCCTTCTCT
1 CTCCCTTCTCT
93067356 CTCCCTTCTCT
1 CTCCCTTCTCT
93067367 CTTCCC-TCTCT
1 C-TCCCTTCTCT
93067378 CT
1 CT
93067380 TTTTTTCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:93067361 original size:22 final size:22
Alignment explanation
Indices: 93067335--93067379 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
93067325 CTGGCCGGAT
93067335 TCCCTT-TCCCCTCCCTTCTCTC
1 TCCCTTCTCCCCTCCC-TCTCTC
* *
93067357 TCCCTTCTCTCTTCCCTCTCTC
1 TCCCTTCTCCCCTCCCTCTCTC
93067379 T
1 T
93067380 TTTTTTCTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (22 bp):
TCCCTTCTCCCCTCCCTCTCTC
Found at i:93067890 original size:11 final size:11
Alignment explanation
Indices: 93067866--93067908 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
93067856 TTCTAATACG
*
93067866 TATATATATTA
1 TATATATTTTA
*
93067877 TATGTATTTTA
1 TATATATTTTA
* *
93067888 TATATATTATG
1 TATATATTTTA
93067899 TATATATTTT
1 TATATATTTT
93067909 TTTAATGCCA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATATATTTTA
Found at i:93073293 original size:75 final size:75
Alignment explanation
Indices: 93073186--93073359 Score: 226
Period size: 75 Copynumber: 2.3 Consensus size: 75
93073176 GCACACCCTC
* ** * * * *
93073186 TATATCTGTCAGTTTATTTGACCAGTGCTGGGCTCAA-TCTTCGTCAGTTTATCTGACTAGTGTA
1 TATATTTGTCAGTTTATCCGACTAATGCTGGGCACAACT-TTCGTCAGTTTATCTGACTAGTGCA
93073250 AGGCACAACAT
65 AGGCACAACAT
*
93073261 TATATTTGTC-GATTTATCCGACTAATGCTGGGCACAACTTTCGTTAGTTTATCTGACTAGTGCA
1 TATATTTGTCAG-TTTATCCGACTAATGCTGGGCACAACTTTCGTCAGTTTATCTGACTAGTGCA
* *
93073325 GGGCACACCAT
65 AGGCACAACAT
93073336 TATATTTGTCAGTTTATCCGACTA
1 TATATTTGTCAGTTTATCCGACTA
93073360 GCATTGGGTG
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
74 1 0.01
75 83 0.97
76 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (75 bp):
TATATTTGTCAGTTTATCCGACTAATGCTGGGCACAACTTTCGTCAGTTTATCTGACTAGTGCAA
GGCACAACAT
Found at i:93073295 original size:40 final size:40
Alignment explanation
Indices: 93073233--93073359 Score: 104
Period size: 40 Copynumber: 3.3 Consensus size: 40
93073223 TCTTCGTCAG
* * * *
93073233 TTTATCTGACTAGTGTAAGGCACAACATTATATTTGTCGA
1 TTTATCCGACTAATGCAGGGCACAACATTATATTTGTCGA
* ** *
93073273 TTTATCCGACTAATGCTGGGCACAAC-TT-T-CGT-TAG-
1 TTTATCCGACTAATGCAGGGCACAACATTATATTTGTCGA
* * *
93073308 TTTATCTGACTAGTGCAGGGCACACCATTATATTTGTC-A
1 TTTATCCGACTAATGCAGGGCACAACATTATATTTGTCGA
93073347 GTTTATCCGACTA
1 -TTTATCCGACTA
93073360 GCATTGGGTG
Statistics
Matches: 65, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
35 22 0.34
36 4 0.06
37 2 0.03
38 2 0.03
39 3 0.05
40 32 0.49
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (40 bp):
TTTATCCGACTAATGCAGGGCACAACATTATATTTGTCGA
Found at i:93073374 original size:75 final size:74
Alignment explanation
Indices: 93073225--93073420 Score: 234
Period size: 75 Copynumber: 2.6 Consensus size: 74
93073215 GGGCTCAATC
* *
93073225 TTCGTCAGTTTATCTGACTAGTGTAAGGCACAACATTATATTTGTCGATTTATCCGACTAATGCT
1 TTCGTTAGTTTATCTGACTAGTGTAGGGCACAACATTATATTTGTCGATTTATCCGACTAAT-CT
93073290 GGGCACAACT
65 GGGCACAACT
* *
93073300 TTCGTTAGTTTATCTGACTAGTGCAGGGCACACCATTATATTTGTC-AGTTTATCCGACTAGCAT
1 TTCGTTAGTTTATCTGACTAGTGTAGGGCACAACATTATATTTGTCGA-TTTATCCGACTA--AT
**
93073364 -TGGGTGCAACT
63 CTGGGCACAACT
* * * ** *
93073375 TTCATTAGTTTATGTGACTAGTGTTGGGCACATTATTATAATTGTC
1 TTCGTTAGTTTATCTGACTAGTGTAGGGCACAACATTATATTTGTC
93073421 TATTATTTGA
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
74 1 0.01
75 102 0.97
77 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (74 bp):
TTCGTTAGTTTATCTGACTAGTGTAGGGCACAACATTATATTTGTCGATTTATCCGACTAATCTG
GGCACAACT
Found at i:93074473 original size:24 final size:24
Alignment explanation
Indices: 93074445--93074497 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
93074435 ATAAAAACTA
*
93074445 AACCCCGAAAACCCGAAAACAAAG
1 AACCCCGAAAACCAGAAAACAAAG
* *
93074469 AACCCCGAAAGCCAGAAAATAAAG
1 AACCCCGAAAACCAGAAAACAAAG
93074493 AACCC
1 AACCC
93074498 TCAAAACGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.53, C:0.32, G:0.13, T:0.02
Consensus pattern (24 bp):
AACCCCGAAAACCAGAAAACAAAG
Found at i:93077842 original size:61 final size:61
Alignment explanation
Indices: 93077776--93077943 Score: 169
Period size: 61 Copynumber: 2.7 Consensus size: 61
93077766 TTCAAAAATA
* * ** *
93077776 ATATTATTTTAATAGATTTAATATTAAATTTAATTTAATACTTATCTAT-TTTATTAATTTT
1 ATATTAATTTAATAGATTTAATATTAAATTTAATTTAATATTTATCT-TCTAAATAAATTTT
** * * * * *
93077837 ATATTAAAGTGAT-TATATTAATATTTAATTTAATTTAATTTTTGTCTTCTAAATAAATTTT
1 ATATTAATTTAATAGAT-TTAATATTAAATTTAATTTAATATTTATCTTCTAAATAAATTTT
* *
93077898 CTATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTAT
1 ATATTAATTTAAT-AGATTTAATATTAAATTTAATTTAATATTTAT
93077944 ATTGATAAGT
Statistics
Matches: 82, Mismatches: 21, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
60 3 0.04
61 53 0.65
62 24 0.29
63 2 0.02
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (61 bp):
ATATTAATTTAATAGATTTAATATTAAATTTAATTTAATATTTATCTTCTAAATAAATTTT
Found at i:93079826 original size:16 final size:16
Alignment explanation
Indices: 93079802--93079832 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93079792 ATTAAAATAT
*
93079802 TAAGGACTAAAATGTA
1 TAAGAACTAAAATGTA
93079818 TAAGAACTAAAATGT
1 TAAGAACTAAAATGT
93079833 TGCTTTTGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.16, T:0.26
Consensus pattern (16 bp):
TAAGAACTAAAATGTA
Found at i:93085837 original size:24 final size:25
Alignment explanation
Indices: 93085768--93085841 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 25
93085758 TGTAAGCTTG
* *
93085768 TAACGGAAAGCTTATCTGG-GCTTAA
1 TAACAGAAAGCTTAT-AGGAGCTTAA
* *
93085793 TAACAGGAAGCTTATAAGAGCTTAA
1 TAACAGAAAGCTTATAGGAGCTTAA
* *
93085818 -ATCAGAAAGCTTATGGGAGCTTAA
1 TAACAGAAAGCTTATAGGAGCTTAA
93085842 CGGGTAACTC
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
24 21 0.52
25 19 0.47
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (25 bp):
TAACAGAAAGCTTATAGGAGCTTAA
Found at i:93092189 original size:15 final size:15
Alignment explanation
Indices: 93092169--93092199 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
93092159 ATACAAAGCC
93092169 TCATAAGGTGTCATT
1 TCATAAGGTGTCATT
93092184 TCATAAGGTGTCATT
1 TCATAAGGTGTCATT
93092199 T
1 T
93092200 GGATGATAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (15 bp):
TCATAAGGTGTCATT
Found at i:93103622 original size:20 final size:20
Alignment explanation
Indices: 93103580--93103628 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
93103570 TCCCCCTTAA
* *
93103580 ATTGTTTTATTTATAAGATT
1 ATTGTTTTATTTATAAAAAT
93103600 ATTGTTTTATTTATAAAAAT
1 ATTGTTTTATTTATAAAAAT
*
93103620 ATTATTTTA
1 ATTGTTTTA
93103629 ATAATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (20 bp):
ATTGTTTTATTTATAAAAAT
Found at i:93110721 original size:18 final size:16
Alignment explanation
Indices: 93110682--93110721 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
93110672 AAAATTTCTT
93110682 TTAAAAATATAAAACA
1 TTAAAAATATAAAACA
*
93110698 TCAAAAATACTAAAAACA
1 TTAAAAATA-T-AAAACA
93110716 TTAAAA
1 TTAAAA
93110722 TAAATATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 8 0.40
17 1 0.05
18 11 0.55
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.23
Consensus pattern (16 bp):
TTAAAAATATAAAACA
Found at i:93110854 original size:18 final size:18
Alignment explanation
Indices: 93110820--93110864 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
93110810 ATGCCTTTAA
93110820 AATAATAACAAAATTATC
1 AATAATAACAAAATTATC
*
93110838 AATAA-AACAAGAGTTAT-
1 AATAATAACAA-AATTATC
93110855 -ATAATAACAA
1 AATAATAACAA
93110865 CGAAATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 4 0.17
17 10 0.42
18 10 0.42
ACGTcount: A:0.62, C:0.09, G:0.04, T:0.24
Consensus pattern (18 bp):
AATAATAACAAAATTATC
Found at i:93110932 original size:21 final size:22
Alignment explanation
Indices: 93110899--93110944 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
93110889 AAATGGTAGC
* * *
93110899 AAAATAAGGAAAAAACAATAAA
1 AAAATAAGCAAAAAAAAAGAAA
93110921 AAAAT-AGCAAAAAAAAAGAAA
1 AAAATAAGCAAAAAAAAAGAAA
93110942 AAA
1 AAA
93110945 GAAAACTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.80, C:0.04, G:0.09, T:0.07
Consensus pattern (22 bp):
AAAATAAGCAAAAAAAAAGAAA
Found at i:93111636 original size:9 final size:9
Alignment explanation
Indices: 93111620--93111671 Score: 86
Period size: 9 Copynumber: 5.8 Consensus size: 9
93111610 GGTATTTTTC
93111620 GGTAATTCG
1 GGTAATTCG
*
93111629 GTTAATTCG
1 GGTAATTCG
*
93111638 GTTAATTCG
1 GGTAATTCG
93111647 GGTAATTCG
1 GGTAATTCG
93111656 GGTAATTCG
1 GGTAATTCG
93111665 GGTAATT
1 GGTAATT
93111672 TTTAACCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:93111849 original size:12 final size:12
Alignment explanation
Indices: 93111832--93111856 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93111822 AGTAATTTCG
93111832 GGTCGGTTAACC
1 GGTCGGTTAACC
93111844 GGTCGGTTAACC
1 GGTCGGTTAACC
93111856 G
1 G
93111857 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:93112986 original size:18 final size:17
Alignment explanation
Indices: 93112952--93113038 Score: 61
Period size: 18 Copynumber: 4.9 Consensus size: 17
93112942 AAATGGTAAC
*
93112952 AATTTATTTTAAATTTTG
1 AATTTA-TTTAATTTTTG
* *
93112970 AATATTATTTAGTTTTTTT
1 AAT-TTATTTA-ATTTTTG
* *
93112989 CATTTATGT-ATTTTT-
1 AATTTATTTAATTTTTG
*
93113004 AATTAATTTTAATTTTTG
1 AATTTA-TTTAATTTTTG
93113022 AATATTATTTAATTTTT
1 AAT-TTATTTAATTTTT
93113039 TTTTCATTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
15 4 0.08
16 7 0.13
17 6 0.11
18 25 0.47
19 11 0.21
ACGTcount: A:0.30, C:0.01, G:0.05, T:0.64
Consensus pattern (17 bp):
AATTTATTTAATTTTTG
Found at i:93113014 original size:52 final size:54
Alignment explanation
Indices: 93112952--93113066 Score: 180
Period size: 54 Copynumber: 2.2 Consensus size: 54
93112942 AAATGGTAAC
* *
93112952 AATTTATTTTAAATTTTGAATATTATTT-A-GTTTTTTTCATTTATGTATTTTT
1 AATTAATTTTAAATTTTGAATATTATTTAATGTTTTTTTCATTTATGTAATTTT
* *
93113004 AATTAATTTTAATTTTTGAATATTATTTAATTTTTTTTTCATTTATGTAATTTT
1 AATTAATTTTAAATTTTGAATATTATTTAATGTTTTTTTCATTTATGTAATTTT
93113058 AATTAATTT
1 AATTAATTT
93113067 GTATTTTATA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
52 26 0.46
53 1 0.02
54 30 0.53
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (54 bp):
AATTAATTTTAAATTTTGAATATTATTTAATGTTTTTTTCATTTATGTAATTTT
Found at i:93114424 original size:31 final size:31
Alignment explanation
Indices: 93114386--93114451 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
93114376 CATCCAAGAG
**
93114386 TTAGCGTGCACCCCGGATTACATACCATGGT
1 TTAGCGTGCACCCCAAATTACATACCATGGT
* *
93114417 TTAGCGTGCACCCCAAATTATATGCCATGGT
1 TTAGCGTGCACCCCAAATTACATACCATGGT
93114448 TTAG
1 TTAG
93114452 GATCTATAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (31 bp):
TTAGCGTGCACCCCAAATTACATACCATGGT
Found at i:93114673 original size:18 final size:18
Alignment explanation
Indices: 93114650--93114686 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
93114640 TGCCAGGTGC
*
93114650 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
93114668 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
93114686 T
1 T
93114687 TTCTTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.27, G:0.08, T:0.41
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:93117994 original size:126 final size:126
Alignment explanation
Indices: 93117761--93118264 Score: 683
Period size: 126 Copynumber: 4.0 Consensus size: 126
93117751 GGCCAATCAT
* * * * *
93117761 GAACTATTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTACTAACATTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCTGTAATTTTACTAACAGTGCATC
* * *
93117826 CTACTTGAAGCATTTTTGACACTATTTGTTCA-AAAATATCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACT-TCTTCTCAAAATTATTTTTTCAG
*
93117887 GAACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCTGTAATTTTACTAACAGTACATC
1 GAACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCTGTAATTTTACTAACAGTGCATC
* *
93117952 CTGCTTGAAGCGTTTTTGACACTATTTGTTTAGAAACTTCTTCTCAAAATTATTTTTTCAT
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAG
* * * *
93118013 GAACTACTGTAGAAAAAGAGCGTCCACATGGTAGCTTTTTTCCGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCTGTAATTTTACTAACAGTGCATC
* *
93118078 CTGCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA--TTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAG
* * ** * * * * *
93118137 GAACTACTGTAGATAAAAAGAGCATCCACGTGACAGTTTTTTTCTGTATTTTTGCTGACAGTGTA
1 GAACTACTGTAG--AAAAAGAGCGTCCACATGGGAGCTTTTTTCTGTAATTTTACTAACAGTGCA
* * * *
93118202 TCCTGTTTGAAGCGTTTTTGACACTAGTTGTTCAGAAACATCTTCTCAAAA-TAATTTTTCAG
64 TCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAG
93118264 G
1 G
93118265 GTAAAAGTAG
Statistics
Matches: 341, Mismatches: 32, Indels: 9
0.89 0.08 0.02
Matches are distributed among these distances:
124 18 0.05
125 2 0.01
126 309 0.91
127 12 0.04
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCTGTAATTTTACTAACAGTGCATC
CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACTTCTTCTCAAAATTATTTTTTCAG
Found at i:93118399 original size:30 final size:30
Alignment explanation
Indices: 93118360--93118453 Score: 100
Period size: 30 Copynumber: 3.0 Consensus size: 30
93118350 ATTTAACCCT
* *
93118360 AAACTCTAATTTAATTTACTTAAAACCTTA
1 AAACCCTAATTTAATTTATTTAAAACCTTA
*
93118390 AAACCCTAATTTATTTAATTTATTTAAAAACCAT-
1 AAACCCT-A---ATTTAATTTATTT-AAAACCTTA
*
93118424 AAACCCCAATTTAATTTATTTAAAACCTTA
1 AAACCCTAATTTAATTTATTTAAAACCTTA
93118454 TTTTAATTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
29 7 0.13
30 19 0.36
31 1 0.02
33 1 0.02
34 18 0.34
35 7 0.13
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (30 bp):
AAACCCTAATTTAATTTATTTAAAACCTTA
Found at i:93118411 original size:34 final size:34
Alignment explanation
Indices: 93118319--93118446 Score: 127
Period size: 34 Copynumber: 3.7 Consensus size: 34
93118309 TTAAAAAAAC
* *
93118319 TAAACCCTAATTTAATTTAATTTAATT-TAACAT
1 TAAACCCTAATTTAATTTAATTTAATTAAAACCT
* * *
93118352 TTAACCCTAAACTCTAATTTAATTTACTTAAAACCT
1 TAAACCCT-AA-TTTAATTTAATTTAATTAAAACCT
* *
93118388 TAAAACCCTAATTT-ATTTAATTTATTTAAAAACCA
1 T-AAACCCTAATTTAATTTAATTTAATT-AAAACCT
*
93118423 TAAACCCCAATTTAATTT-ATTTAA
1 TAAACCCTAATTTAATTTAATTTAA
93118447 AACCTTATTT
Statistics
Matches: 78, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
33 7 0.09
34 30 0.38
35 28 0.36
36 7 0.09
37 6 0.08
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.41
Consensus pattern (34 bp):
TAAACCCTAATTTAATTTAATTTAATTAAAACCT
Found at i:93118427 original size:64 final size:68
Alignment explanation
Indices: 93118320--93118453 Score: 186
Period size: 64 Copynumber: 2.0 Consensus size: 68
93118310 TAAAAAAACT
* * *
93118320 AAACCCTAATTTAATTTAATTTAATTTAACATTTAACCCTAAACTCTAATTTAATTTACTTAAAA
1 AAACCCTAATTTAATTTAATTTAATTTAACA--TAACCATAAACCCCAATTTAATTTACTTAAAA
93118385 CCTTA
64 CCTTA
*
93118390 AAACCCTAATTT-ATTTAATTT-ATTTAA-A-AACCATAAACCCCAATTTAATTTATTTAAAACC
1 AAACCCTAATTTAATTTAATTTAATTTAACATAACCATAAACCCCAATTTAATTTACTTAAAACC
93118451 TTA
66 TTA
93118454 TTTTAATTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
64 32 0.53
67 1 0.02
68 6 0.10
69 9 0.15
70 12 0.20
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (68 bp):
AAACCCTAATTTAATTTAATTTAATTTAACATAACCATAAACCCCAATTTAATTTACTTAAAACC
TTA
Found at i:93118447 original size:21 final size:21
Alignment explanation
Indices: 93118423--93118469 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
93118413 TTAAAAACCA
93118423 TAAACCCCAATTTAATTTATT
1 TAAACCCCAATTTAATTTATT
** *
93118444 TAAAACCTTATTTTAATTTATT
1 T-AAACCCCAATTTAATTTATT
93118466 TAAA
1 TAAA
93118470 ACCCTAAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (21 bp):
TAAACCCCAATTTAATTTATT
Found at i:93118494 original size:33 final size:32
Alignment explanation
Indices: 93118456--93118541 Score: 102
Period size: 34 Copynumber: 2.7 Consensus size: 32
93118446 AAACCTTATT
**
93118456 TTAATTTATTTAAAACCCTAAACCCTAATTTTC
1 TTAATTTATTTAAAACCCTAAACCCTAA-ACTC
* *
93118489 TTAATTTATTTAAAAACCATAAACTCTAAACTC
1 TTAATTTATTT-AAAACCCTAAACCCTAAACTC
*
93118522 -TAATTTATTTAGAACCCTAA
1 TTAATTTATTTAAAACCCTAA
93118542 CTTAATTTCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
31 8 0.17
32 10 0.22
33 13 0.28
34 15 0.33
ACGTcount: A:0.41, C:0.19, G:0.01, T:0.40
Consensus pattern (32 bp):
TTAATTTATTTAAAACCCTAAACCCTAAACTC
Found at i:93118547 original size:22 final size:23
Alignment explanation
Indices: 93118517--93118559 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
93118507 ATAAACTCTA
*
93118517 AACTCTAATTTATTTAGAACCCT
1 AACTCTAATTTATTTAAAACCCT
*
93118540 AACT-TAATTTCTTTAAAACC
1 AACTCTAATTTATTTAAAACC
93118560 TTAAAAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.37, C:0.21, G:0.02, T:0.40
Consensus pattern (23 bp):
AACTCTAATTTATTTAAAACCCT
Found at i:93118597 original size:89 final size:87
Alignment explanation
Indices: 93118360--93118606 Score: 331
Period size: 89 Copynumber: 2.8 Consensus size: 87
93118350 ATTTAACCCT
*
93118360 AAACTCTAATTTAATTTAC-TTAAAACCTTAAAACCCTAATTTAT-TTAATTTATTTAAAAACCA
1 AAACCCTAATTTAATTT-CTTTAAAACCTTAAAACCCTAATTT-TCTTAATTTATTTAAAAACCA
** *
93118423 TAAAC-CCCAATTTAATTTATTTA
64 TAAACTCTAAATCTAATTTATTTA
* * * *
93118446 AAACCTTATTTTAATTTATTTAAAACCCT-AAACCCTAATTTTCTTAATTTATTTAAAAACCATA
1 AAACCCTAATTTAATTTCTTTAAAACCTTAAAACCCTAATTTTCTTAATTTATTTAAAAACCATA
93118510 AACTCTAAACTCTAATTTATTTA
66 AACTCTAAA-TCTAATTTATTTA
* * *
93118533 GAACCCTAACTTAATTTCTTTAAAACCTTAAAAACTCTAATTTTCTTAATTTATTTAAAAACCAT
1 AAACCCTAATTTAATTTCTTTAAAACCTT-AAAACCCTAATTTTCTTAATTTATTTAAAAACCAT
93118598 AAACTCTAA
65 AAACTCTAA
93118607 TTTGAATAAT
Statistics
Matches: 140, Mismatches: 15, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
84 1 0.01
85 36 0.26
86 26 0.19
87 35 0.25
89 42 0.30
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (87 bp):
AAACCCTAATTTAATTTCTTTAAAACCTTAAAACCCTAATTTTCTTAATTTATTTAAAAACCATA
AACTCTAAATCTAATTTATTTA
Found at i:93118607 original size:34 final size:34
Alignment explanation
Indices: 93118542--93118609 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
93118532 AGAACCCTAA
*
93118542 CTTAATTTCTTTAAAACCTTAAAAACTCTAATTTT
1 CTTAATTTATTTAAAACC-TAAAAACTCTAATTTT
*
93118577 CTTAATTTATTTAAAAACC-ATAAACTCTAATTT
1 CTTAATTTATTT-AAAACCTAAAAACTCTAATTT
93118610 GAATAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
34 13 0.43
35 11 0.37
36 6 0.20
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (34 bp):
CTTAATTTATTTAAAACCTAAAAACTCTAATTTT
Found at i:93119271 original size:13 final size:13
Alignment explanation
Indices: 93119253--93119279 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
93119243 AAAATTTAGG
93119253 ATAGCATTATTTA
1 ATAGCATTATTTA
93119266 ATAGCATTATTTA
1 ATAGCATTATTTA
93119279 A
1 A
93119280 AAATAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (13 bp):
ATAGCATTATTTA
Found at i:93122615 original size:18 final size:18
Alignment explanation
Indices: 93122534--93122622 Score: 63
Period size: 18 Copynumber: 4.9 Consensus size: 18
93122524 TCAGGCATAT
* *
93122534 AAGTCAAAGCCAGAGCTA
1 AAGTCAGAGCCAGAGCCA
* * * *
93122552 GAGGCCGAGCCAGAGTCA
1 AAGTCAGAGCCAGAGCCA
* * *
93122570 GAGTCAGAGTCAGAGCCC
1 AAGTCAGAGCCAGAGCCA
93122588 AAGTTC-GAGCCAGAGCCA
1 AAG-TCAGAGCCAGAGCCA
* *
93122606 AAGCCAGAGCCCGAGCC
1 AAGTCAGAGCCAGAGCC
93122623 CTAGCCTAAG
Statistics
Matches: 53, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
17 1 0.02
18 50 0.94
19 2 0.04
ACGTcount: A:0.33, C:0.29, G:0.30, T:0.08
Consensus pattern (18 bp):
AAGTCAGAGCCAGAGCCA
Done.