Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 291 of 325
Found at i:93122623 original size:6 final size:6
Alignment explanation
Indices: 93122541--93122622 Score: 53
Period size: 6 Copynumber: 13.7 Consensus size: 6
93122531 TATAAGTCAA
* * * *
93122541 AGCCAG AGCTAG AGGCC-G AGCCAG AGTCAG AGTCAG AGTCAG AGCCCA-
1 AGCCAG AGCCAG A-GCCAG AGCCAG AGCCAG AGCCAG AGCCAG AG-CCAG
* * *
93122589 AGTTC-G AGCCAG AGCCAA AGCCAG AGCCCG AGCC
1 AG-CCAG AGCCAG AGCCAG AGCCAG AGCCAG AGCC
93122623 CTAGCCTAAG
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
5 4 0.07
6 53 0.87
7 4 0.07
ACGTcount: A:0.30, C:0.30, G:0.32, T:0.07
Consensus pattern (6 bp):
AGCCAG
Found at i:93123214 original size:48 final size:48
Alignment explanation
Indices: 93123114--93123206 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
93123104 ATTAATTGCA
93123114 ACATTACAACATTAAAACTTAGAACAAACTTTGTAATATAAATTAAAT
1 ACATTACAACATTAAAACTTAGAACAAACTTTGTAATATAAATTAAAT
* * * *
93123162 ACATTATAACATTAAAACTTGGAACGAACTTTTTAATATAAATTA
1 ACATTACAACATTAAAACTTAGAACAAACTTTGTAATATAAATTA
93123207 GGTACATTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.33
Consensus pattern (48 bp):
ACATTACAACATTAAAACTTAGAACAAACTTTGTAATATAAATTAAAT
Found at i:93124935 original size:46 final size:44
Alignment explanation
Indices: 93124876--93124990 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
93124866 ACAGGACAGA
* *
93124876 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
93124922 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
93124966 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
93124991 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:93124971 original size:44 final size:45
Alignment explanation
Indices: 93124876--93125009 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
93124866 ACAGGACAGA
* *
93124876 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
93124922 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
93124966 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
93125010 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:93132238 original size:46 final size:44
Alignment explanation
Indices: 93132179--93132293 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
93132169 ACAGGACAGA
* *
93132179 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
93132225 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
93132269 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
93132294 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:93132274 original size:44 final size:45
Alignment explanation
Indices: 93132179--93132312 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
93132169 ACAGGACAGA
* *
93132179 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
93132225 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
93132269 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
93132313 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:93136900 original size:27 final size:27
Alignment explanation
Indices: 93136870--93136943 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
93136860 AAATGGTACT
*
93136870 AGTGCCGCCTATCAGATATGGGTCACC
1 AGTGCCGCCTATCAGATAGGGGTCACC
*
93136897 AGTGCCGCCTATCAGATAGGGGTCACT
1 AGTGCCGCCTATCAGATAGGGGTCACC
*
93136924 GGTGCCGCCTATCAGATAGG
1 AGTGCCGCCTATCAGATAGG
93136944 CACCATACCC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (27 bp):
AGTGCCGCCTATCAGATAGGGGTCACC
Found at i:93140735 original size:26 final size:25
Alignment explanation
Indices: 93140685--93140736 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
93140675 GATGATTATT
*
93140685 ATTATTGTTATTAAATTTTAATAAA
1 ATTATTGTTAATAAATTTTAATAAA
* *
93140710 ATTATTGTTAAATATATTTTATTAAA
1 ATTATTGTT-AATAAATTTTAATAAA
93140736 A
1 A
93140737 AATAATAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (25 bp):
ATTATTGTTAATAAATTTTAATAAA
Found at i:93142720 original size:91 final size:91
Alignment explanation
Indices: 93142560--93142742 Score: 330
Period size: 91 Copynumber: 2.0 Consensus size: 91
93142550 ATTTATGATA
* *
93142560 TTCGATTCATCGTCATCTATCACATTACTAGGTAATCCTTCTCCCAACTCCTCTTCAATAGGAGA
1 TTCGATTCATCGTCATCTATCACAGTACTAGGTAATCCTTCTCCCAACTCCGCTTCAATAGGAGA
93142625 AAGACTCATATAAGTTCGAATAAAAT
66 AAGACTCATATAAGTTCGAATAAAAT
*
93142651 TTCGGTTCATCGTCATCTATCACAGTACTAGGTAATCCTTCTCCCAACTCCGCTTCAATAGGAGA
1 TTCGATTCATCGTCATCTATCACAGTACTAGGTAATCCTTCTCCCAACTCCGCTTCAATAGGAGA
*
93142716 AAGACTCATATAAGTTTGAATAAAAT
66 AAGACTCATATAAGTTCGAATAAAAT
93142742 T
1 T
93142743 ATGGAGCAAA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 88 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (91 bp):
TTCGATTCATCGTCATCTATCACAGTACTAGGTAATCCTTCTCCCAACTCCGCTTCAATAGGAGA
AAGACTCATATAAGTTCGAATAAAAT
Found at i:93146560 original size:21 final size:21
Alignment explanation
Indices: 93146534--93146574 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
93146524 TCATTTAGGC
93146534 ACAATTTGCTTTGCTAGTTTT
1 ACAATTTGCTTTGCTAGTTTT
93146555 ACAATTTGCTTTGCTAGTTT
1 ACAATTTGCTTTGCTAGTTT
93146575 ATATCCAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.51
Consensus pattern (21 bp):
ACAATTTGCTTTGCTAGTTTT
Found at i:93160188 original size:10 final size:10
Alignment explanation
Indices: 93160161--93160210 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
93160151 TTAAATTCTA
*
93160161 AAAGATAATT
1 AAAGATAAAT
93160171 ACAA-ATAAAT
1 A-AAGATAAAT
*
93160181 AAAGATAATT
1 AAAGATAAAT
93160191 AAAGATAAAT
1 AAAGATAAAT
93160201 GAAA-ATAAAT
1 -AAAGATAAAT
93160211 CCTAAAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:93160208 original size:20 final size:20
Alignment explanation
Indices: 93160161--93160200 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
93160151 TTAAATTCTA
93160161 AAAGATAATTACAAATAAAT
1 AAAGATAATTACAAATAAAT
93160181 AAAGATAATTA-AAGATAAAT
1 AAAGATAATTACAA-ATAAAT
93160201 GAAAATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.65, C:0.03, G:0.07, T:0.25
Consensus pattern (20 bp):
AAAGATAATTACAAATAAAT
Found at i:93167207 original size:34 final size:34
Alignment explanation
Indices: 93167162--93167226 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
93167152 TTCAGTACAT
*
93167162 AATGGGCTGTACAAGCTTAACCTAATTAACTGTC
1 AATGGGCTGTACAAGCTTAACCTAACTAACTGTC
*
93167196 AATGGGTTGTACAAGCTTAACCTAACTAACT
1 AATGGGCTGTACAAGCTTAACCTAACTAACT
93167227 CGTCCTACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (34 bp):
AATGGGCTGTACAAGCTTAACCTAACTAACTGTC
Found at i:93170096 original size:30 final size:30
Alignment explanation
Indices: 93170043--93170100 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
93170033 CACGTCCATG
* *
93170043 ACACACGGGCGTGTGGTCTACCCGTGTGTC
1 ACACACGGGCATGTGGTCCACCCGTGTGTC
93170073 ACACACGGGCATGTGG-CACACCCGTGTG
1 ACACACGGGCATGTGGTC-CACCCGTGTG
93170101 GAAGTGCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (30 bp):
ACACACGGGCATGTGGTCCACCCGTGTGTC
Found at i:93175166 original size:2 final size:2
Alignment explanation
Indices: 93175159--93175188 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
93175149 TTTAGGGTAA
93175159 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
93175189 GACATCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:93180140 original size:2 final size:2
Alignment explanation
Indices: 93180133--93180162 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
93180123 CCAAATATTA
93180133 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93180163 TTTTACAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93184241 original size:214 final size:216
Alignment explanation
Indices: 93183838--93184268 Score: 821
Period size: 214 Copynumber: 2.0 Consensus size: 216
93183828 CGCGTGGAAG
*
93183838 AGGCGACGGTCAAGGGCGTGGTGGCCGAGGTGGCATGCGCGGTGGTTCAGCATGCGTGGGGTAAG
1 AGGCGACGGTCAAGGGCGTGGTGGCCGAGGTGGCATGCGCGGTGGTTCAGCATGCATGGGGTAAG
93183903 CGGCGGCTGAAGAAAGAGGCTAAGGTTGCTGAAACAATTTGGGTAGTTTGGGCTAGGGTTAGTTT
66 CGGCGGCTGAAGAAAGAGGCTAAGGTTGCTGAAACAATTTGGGTAGTTTGGGCTAGGGTTAGTTT
93183968 TAGGCCTATTGGGTCTGGGCTTGTGAAATTATTTGTTGGGCTATTATATTTTATTTGTTTATGGG
131 TAGGCCTATTGGGTCTGGGCTTGTGAAATTATTTGTTGGGCTATTATATTTTATTTGTTTATGGG
93184033 CCCGGGCAATATTGGGCTTGT
196 CCCGGGCAATATTGGGCTTGT
*
93184054 AGGCGACGGTCAAGGGCGTGGTGGCTGAGGTGGCATGCGCGGTGGTTCAGCATGCATGGGGTAAG
1 AGGCGACGGTCAAGGGCGTGGTGGCCGAGGTGGCATGCGCGGTGGTTCAGCATGCATGGGGTAAG
93184119 CGGCGGCTGAAG-AAGAGGCTAAGGTTGCTGAAACAATTTGGGTAG-TTGGGCTAGGGTTAGTTT
66 CGGCGGCTGAAGAAAGAGGCTAAGGTTGCTGAAACAATTTGGGTAGTTTGGGCTAGGGTTAGTTT
*
93184182 TAGGCCTATTGGGTCTGGGCTTGTGAAATTATTTGTTGGGCTGTTATATTTTATTTGTTTATGGG
131 TAGGCCTATTGGGTCTGGGCTTGTGAAATTATTTGTTGGGCTATTATATTTTATTTGTTTATGGG
93184247 CCCGGGCAATATTGGGCTTGT
196 CCCGGGCAATATTGGGCTTGT
93184268 A
1 A
93184269 CACAAATTTT
Statistics
Matches: 212, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
214 104 0.49
215 33 0.16
216 75 0.35
ACGTcount: A:0.19, C:0.13, G:0.38, T:0.31
Consensus pattern (216 bp):
AGGCGACGGTCAAGGGCGTGGTGGCCGAGGTGGCATGCGCGGTGGTTCAGCATGCATGGGGTAAG
CGGCGGCTGAAGAAAGAGGCTAAGGTTGCTGAAACAATTTGGGTAGTTTGGGCTAGGGTTAGTTT
TAGGCCTATTGGGTCTGGGCTTGTGAAATTATTTGTTGGGCTATTATATTTTATTTGTTTATGGG
CCCGGGCAATATTGGGCTTGT
Found at i:93189215 original size:3 final size:3
Alignment explanation
Indices: 93189207--93189233 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
93189197 TGCCCAAACT
93189207 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
93189234 GGTCACCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:93190706 original size:6 final size:6
Alignment explanation
Indices: 93190697--93190733 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
93190687 TCAAATCCAT
* *
93190697 TATTAT TATTAC TATTAC TATTAC TATTAT TATTAC T
1 TATTAC TATTAC TATTAC TATTAC TATTAC TATTAC T
93190734 TTGTATTCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (6 bp):
TATTAC
Found at i:93190718 original size:12 final size:12
Alignment explanation
Indices: 93190697--93190733 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
93190687 TCAAATCCAT
93190697 TATTATTATTAC
1 TATTATTATTAC
*
93190709 TATTACTATTAC
1 TATTATTATTAC
93190721 TATTATTATTAC
1 TATTATTATTAC
93190733 T
1 T
93190734 TTGTATTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:93190880 original size:3 final size:3
Alignment explanation
Indices: 93190872--93190896 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
93190862 TCAGCACTTG
93190872 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
93190897 AAAACCTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:93196465 original size:41 final size:41
Alignment explanation
Indices: 93196420--93196600 Score: 146
Period size: 45 Copynumber: 4.2 Consensus size: 41
93196410 TCCCAAACAG
* * *
93196420 GGTCTTACATGAATCGAATTCGATGCTGATGTCTTAGACAT
1 GGTCTTACACGAATCGAATTCGATGCCGATGTCTCAGACAT
* * * * * *
93196461 GGTCTTACACGTAACCACATATATCGATGCCAACGTCCCAGACGT
1 GGTCTTACACG-AATC-GA-AT-TCGATGCCGATGTCTCAGACAT
* *
93196506 GGTCTTACACGAATCGAATACGATACCGATGTCTCAGACAT
1 GGTCTTACACGAATCGAATTCGATGCCGATGTCTCAGACAT
* * * * *
93196547 GGTCTTACACGTAACCACATATATCGATGCCAACGTCCCAGACAT
1 GGTCTTACACG-AATC-GA-AT-TCGATGCCGATGTCTCAGACAT
93196592 GGTCTTACA
1 GGTCTTACA
93196601 TGAAATCACA
Statistics
Matches: 108, Mismatches: 24, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
41 37 0.34
42 8 0.07
43 3 0.03
44 7 0.06
45 53 0.49
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (41 bp):
GGTCTTACACGAATCGAATTCGATGCCGATGTCTCAGACAT
Found at i:93196509 original size:45 final size:45
Alignment explanation
Indices: 93196455--93196616 Score: 206
Period size: 45 Copynumber: 3.7 Consensus size: 45
93196445 CTGATGTCTT
93196455 AGACATGGTCTTACACGTAACCACATATATCGATGCCAACGTCCC
1 AGACATGGTCTTACACGTAACCACATATATCGATGCCAACGTCCC
* * * * * * *
93196500 AGACGTGGTCTTACACG-AATC-GA-ATA-CGATACCGATGTCTC
1 AGACATGGTCTTACACGTAACCACATATATCGATGCCAACGTCCC
93196541 AGACATGGTCTTACACGTAACCACATATATCGATGCCAACGTCCC
1 AGACATGGTCTTACACGTAACCACATATATCGATGCCAACGTCCC
* * *
93196586 AGACATGGTCTTACATGAAATCACATATATC
1 AGACATGGTCTTACACGTAACCACATATATC
93196617 AAAATCCTAT
Statistics
Matches: 96, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 27 0.28
42 6 0.06
43 2 0.02
44 6 0.06
45 55 0.57
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (45 bp):
AGACATGGTCTTACACGTAACCACATATATCGATGCCAACGTCCC
Found at i:93196520 original size:86 final size:86
Alignment explanation
Indices: 93196395--93196600 Score: 308
Period size: 86 Copynumber: 2.4 Consensus size: 86
93196385 ATGCTATCTC
* * * * * * *
93196395 ATATCGATGTC-ACTGTCCCAAACAG-GGTCTTACATGAATCGAATTCGATGCTGATGTCTTAGA
1 ATATCGATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAATCGAATACGATACCGATGTCTCAGA
93196458 CATGGTCTTACACGTAACCACAT
64 CATGGTCTTACACGTAACCACAT
93196481 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAATCGAATACGATACCGATGTCTCAGACA
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAATCGAATACGATACCGATGTCTCAGACA
93196546 TGGTCTTACACGTAACCACAT
66 TGGTCTTACACGTAACCACAT
*
93196567 ATATCGATGCCAACGTCCCAGACATGGTCTTACA
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTACA
93196601 TGAAATCACA
Statistics
Matches: 110, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
85 1 0.01
86 107 0.97
87 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (86 bp):
ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAATCGAATACGATACCGATGTCTCAGACA
TGGTCTTACACGTAACCACAT
Found at i:93197731 original size:14 final size:15
Alignment explanation
Indices: 93197714--93197742 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
93197704 TCATGAAAAT
93197714 TTCACACAT-ATAAA
1 TTCACACATAATAAA
93197728 TTCACACATAATAAA
1 TTCACACATAATAAA
93197743 CACAGAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:93198981 original size:36 final size:36
Alignment explanation
Indices: 93198931--93199009 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 36
93198921 CTACCTACAT
* * **
93198931 GGTCTGCACGATTTCACAAGATTGTGTGGCCCACAC
1 GGTCTACACAATTTCACAAGACCGTGTGGCCCACAC
* *
93198967 GGTCTACACAATTTCACACGACCGTGTGGTCCACAC
1 GGTCTACACAATTTCACAAGACCGTGTGGCCCACAC
93199003 GGTCTAC
1 GGTCTAC
93199010 CCACACAATC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (36 bp):
GGTCTACACAATTTCACAAGACCGTGTGGCCCACAC
Found at i:93201186 original size:3 final size:3
Alignment explanation
Indices: 93201178--93201225 Score: 87
Period size: 3 Copynumber: 15.7 Consensus size: 3
93201168 CACATCTTTT
93201178 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
93201224 TA
1 TA
93201226 GTGATAATTA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:93203268 original size:13 final size:13
Alignment explanation
Indices: 93203229--93203272 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
93203219 ATCCTAACAC
93203229 AATTTTAATTTTA
1 AATTTTAATTTTA
*
93203242 ATATTTTTATTTTA
1 A-ATTTTAATTTTA
*
93203256 AATTCTAATTTTA
1 AATTTTAATTTTA
93203269 AATT
1 AATT
93203273 GATAGATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 15 0.56
14 12 0.44
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (13 bp):
AATTTTAATTTTA
Found at i:93203342 original size:20 final size:21
Alignment explanation
Indices: 93203317--93203355 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
93203307 TTTATGAAAA
*
93203317 TTTAATTTA-AATAATATATT
1 TTTAATTTATAAAAATATATT
93203337 TTTAATTTATAAAAATATA
1 TTTAATTTATAAAAATATA
93203356 GTTTAAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTAATTTATAAAAATATATT
Found at i:93203360 original size:20 final size:20
Alignment explanation
Indices: 93203317--93203361 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
93203307 TTTATGAAAA
* *
93203317 TTTAATTTAAATAATATATT
1 TTTAATTTAAAAAATATATG
93203337 TTTAATTTATAAAAATATA-G
1 TTTAATTTA-AAAAATATATG
93203357 TTTAA
1 TTTAA
93203362 AGTTCAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TTTAATTTAAAAAATATATG
Found at i:93203780 original size:9 final size:9
Alignment explanation
Indices: 93203766--93203845 Score: 54
Period size: 9 Copynumber: 8.7 Consensus size: 9
93203756 AATTTTTAAA
93203766 ATATTTTTT
1 ATATTTTTT
93203775 ATATTTTTT
1 ATATTTTTT
** * *
93203784 AATAACTGTA
1 -ATATTTTTT
93203794 ATATTTTTT
1 ATATTTTTT
**
93203803 AT-TTTTAAA
1 ATATTTT-TT
93203812 ATATTTTTT
1 ATATTTTTT
93203821 ATAATTTTTT
1 AT-ATTTTTT
*
93203831 ATAATTTTT
1 ATATTTTTT
*
93203840 AAATTT
1 ATATTT
93203846 AAAAGTTTAA
Statistics
Matches: 52, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
8 4 0.08
9 30 0.58
10 18 0.35
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (9 bp):
ATATTTTTT
Found at i:93203827 original size:10 final size:10
Alignment explanation
Indices: 93203814--93203839 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
93203804 TTTTTAAAAT
93203814 ATTTTTTATA
1 ATTTTTTATA
93203824 ATTTTTTATA
1 ATTTTTTATA
93203834 ATTTTT
1 ATTTTT
93203840 AAATTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:93209891 original size:38 final size:37
Alignment explanation
Indices: 93209809--93209891 Score: 87
Period size: 38 Copynumber: 2.2 Consensus size: 37
93209799 TAGACTTTAT
93209809 TTTTTAATAATTTTATAAGTTATATAAAATTTTAAATA
1 TTTTT-ATAATTTTATAAGTTATATAAAATTTTAAATA
* * * *
93209847 TGTTTTATATTTTTATTATTTATAT-AAATTTGTATATCA
1 T-TTTTATAATTTTATAAGTTATATAAAATTT-TAAAT-A
93209886 TTTTTA
1 TTTTTA
93209892 GAGTTTTTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
37 6 0.16
38 26 0.68
39 6 0.16
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (37 bp):
TTTTTATAATTTTATAAGTTATATAAAATTTTAAATA
Found at i:93217924 original size:18 final size:18
Alignment explanation
Indices: 93217903--93217940 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
93217893 TCTGTTTTGT
93217903 TTCTATTCT-TTTCTTTTA
1 TTCT-TTCTGTTTCTTTTA
*
93217921 TTCTTTTTGTTTCTTTTA
1 TTCTTTCTGTTTCTTTTA
93217939 TT
1 TT
93217941 ATTTGTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.08, C:0.13, G:0.03, T:0.76
Consensus pattern (18 bp):
TTCTTTCTGTTTCTTTTA
Found at i:93224777 original size:46 final size:47
Alignment explanation
Indices: 93224720--93224817 Score: 117
Period size: 46 Copynumber: 2.1 Consensus size: 47
93224710 ACACACCGAA
* * * *
93224720 GCCATAGCCCAGCTATGGTTTTACACG-GATCACATATCATACCAAT
1 GCCATAGCCCAGATATGGTCTTACACGAAAGCACATATCATACCAAT
* * * *
93224766 GCCATATCCCAGATATGGTCTTATACGAAAGCTCATATTATACCAAT
1 GCCATAGCCCAGATATGGTCTTACACGAAAGCACATATCATACCAAT
93224813 GCCAT
1 GCCAT
93224818 GGTCTTATAC
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 23 0.53
47 20 0.47
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.28
Consensus pattern (47 bp):
GCCATAGCCCAGATATGGTCTTACACGAAAGCACATATCATACCAAT
Found at i:93234633 original size:88 final size:81
Alignment explanation
Indices: 93234529--93235100 Score: 347
Period size: 88 Copynumber: 6.9 Consensus size: 81
93234519 ACAGACATTA
* *
93234529 AAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGATATTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
93234594 TGATTTTTTGAAACTTAACTTG
65 TGATTTTTTGAAA---AA--TG
* * * * * *
93234616 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGAAGGTTCAACTCACCTCTCACAATATGA
1 AAAA-CAGATATTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
* *
93234680 GTTGA-TATTTGAAAAACAG
63 GTTGATTTTTTGAAAAA-TG
* * * * ** *** *
93234699 AAATTA-AAATACT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAATA
1 AAA--ACAGATATTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAATA
93234761 TGAGTTGAATTTTTTTGAAAAA--
60 TGAGTTG-A-TTTTTTGAAAAATG
* * *
93234783 AAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACATCTCGCAATATGAGT
1 AAAACAGATATTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
93234848 TGA-TTTTTGAAAACAGAATCTG
65 TGATTTTTTG--AA-A-AA--TG
* * * * * * *
93234870 AAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATATCGCAATGTGAG
1 -AAAACAGATATTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
93234935 TTGATTTTTTTGAAAAAT-
64 TTGA-TTTTTTGAAAAATG
** *** * *
93234953 ATAAATTGA-A---AAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 A-AAACAGATATTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
93235013 GTTGATTTTTT------TG
63 GTTGATTTTTTGAAAAATG
* * *
93235026 AAAGACAGAAATTGAAAATAGCTCTGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAA-ACAGATATTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
93235091 TTGATTTTTT
64 TTGATTTTTT
93235101 TTTTGAAAGG
Statistics
Matches: 381, Mismatches: 65, Indels: 88
0.71 0.12 0.16
Matches are distributed among these distances:
72 3 0.01
73 4 0.01
74 1 0.00
76 2 0.01
77 52 0.14
78 6 0.02
79 49 0.13
80 2 0.01
81 6 0.02
82 40 0.10
83 23 0.06
84 41 0.11
85 6 0.02
86 2 0.01
87 26 0.07
88 112 0.29
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (81 bp):
AAAACAGATATTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTGAAAAATG
Found at i:93234732 original size:30 final size:30
Alignment explanation
Indices: 93234696--93234757 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
93234686 ATTTGAAAAA
93234696 CAGAAATTAAAATA-CTCAACTCAACTCTCG
1 CAGAAATTAAAA-AGCTCAACTCAACTCTCG
*
93234726 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
93234756 CA
1 CA
93234758 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 1 0.03
30 29 0.97
ACGTcount: A:0.42, C:0.29, G:0.08, T:0.21
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:93234997 original size:79 final size:77
Alignment explanation
Indices: 93234868--93235101 Score: 256
Period size: 77 Copynumber: 3.0 Consensus size: 77
93234858 AAACAGAATC
** ** * * * * *
93234868 TGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATATCGCAATGT
1 TGAAAAACAGAAATTGAAAATACCTCAG-CGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
93234932 GAGTTGATTTTTT
65 GAGTTGATTTTTT
* * * * * *
93234945 TGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAAT
1 TGAAAAACAGAAATTG--AAAATACCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAAT
93235009 ATGAGTTGATTTTTT
63 ATGAGTTGATTTTTT
* * *
93235024 TGAAAGACAGAAATTGAAAATAGCTCTGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
1 TGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
93235089 AGTTGATTTTTT
66 AGTTGATTTTTT
93235101 T
1 T
93235102 TTTGAAAGGC
Statistics
Matches: 131, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
76 2 0.02
77 65 0.50
79 62 0.47
80 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (77 bp):
TGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTT
Found at i:93235102 original size:79 final size:78
Alignment explanation
Indices: 93234907--93235123 Score: 258
Period size: 77 Copynumber: 2.7 Consensus size: 78
93234897 ATGTGACCCG
* * * * * *
93234907 AGGCTCAACTCACATATCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG--AAAATACCT
* * * *
93234972 CAGTGTGTGATCTGA
64 CAGCGCGTGAGCTCA
* *
93234987 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
93235051 GCGCGTGAGC-CA
66 GCGCGTGAGCTCA
*
93235063 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAGACAGAAATTGAAAA
93235124 ACGGAAACTG
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
76 2 0.02
77 46 0.38
79 46 0.38
80 26 0.22
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
GCGCGTGAGCTCA
Found at i:93235186 original size:94 final size:94
Alignment explanation
Indices: 93235023--93235195 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 94
93235013 GTTGATTTTT
* * * * * *
93235023 TTGAAAGACAGAAATTGAAAATAGCTCTGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAACTGAAAATACCTCGGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
93235088 GAGTTGATTTTTTTTTTGAAAGGCAGAAA
66 GAGTTGATTTTTTTTTTGAAAGGCAGAAA
* * * *
93235117 TTGAAAAACGGAAACTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAACTGAAAATACCTCGGCGCGTGAGCC-AAGGCTCAACTCACCTCTCACAATA
93235181 CGAGTTGATTTTTTT
65 CGAGTTGATTTTTTT
93235196 GACAACAGAA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
93 2 0.03
94 66 0.97
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (94 bp):
TTGAAAAACAGAAACTGAAAATACCTCGGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
GAGTTGATTTTTTTTTTGAAAGGCAGAAA
Found at i:93235188 original size:171 final size:168
Alignment explanation
Indices: 93234963--93235269 Score: 438
Period size: 171 Copynumber: 1.8 Consensus size: 168
93234953 ATAAATTGAA
* * * *
93234963 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
93235028 AGACAGAAATTGAAAATAGCTCTGC-GCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAG
66 A-ACAGAAATTGAAAATA-C-CT-CAGCGTG-GCTCAAGGCTCAACTCACCTCTCGCAATATGAG
93235091 TTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAACTG
126 TTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAACTG
* * * *
93235134 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
* * ** *
93235199 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
93235264 TTTTTT
131 TTTTTT
93235270 GAAAAACAGA
Statistics
Matches: 121, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
167 2 0.02
168 45 0.37
169 1 0.01
170 15 0.12
171 58 0.48
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (168 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAAATACCTCAGCGTGGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAACTG
Found at i:93235308 original size:75 final size:75
Alignment explanation
Indices: 93235117--93235466 Score: 447
Period size: 77 Copynumber: 4.7 Consensus size: 75
93235107 AAGGCAGAAA
* * * * * *
93235117 TTGAAAAACGGAAACTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCACCTCTCACAATAT
93235182 GAGTTGATTTTT
64 GAGTTGATTTTT
* * * *
93235194 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
93235258 GTTGATTTTT
66 GTTGATTTTT
* **
93235268 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
93235333 GTTGATTTTTTT
66 GTTGA--TTTTT
* * * ** *
93235345 TTTAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
*
93235410 GTTGA--ATT
66 GTTGATTTTT
*
93235418 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA
93235467 TTTTGAACAG
Statistics
Matches: 245, Mismatches: 25, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
72 43 0.18
73 4 0.02
74 39 0.16
75 59 0.24
76 25 0.10
77 75 0.31
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTT
Found at i:93235444 original size:149 final size:148
Alignment explanation
Indices: 93235117--93235469 Score: 458
Period size: 149 Copynumber: 2.4 Consensus size: 148
93235107 AAGGCAGAAA
* * * * * ***
93235117 TTGAAAAACGGAAACTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCACAATAC
* * * * * *
93235182 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTTAACTCACCTC
64 GAGTTGATTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAACCTC
*
93235247 TCGCAATATGAGTTGATTTTT
129 TCGCAATATGAGTTGA-TATT
*
93235268 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATACGA
**
93235333 GTTGATTTTTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTT
66 GTTGA---TTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAACCT
93235398 CTCGCAATATGAGTTGA-ATT
128 CTCGCAATATGAGTTGATATT
* *
93235418 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
93235470 TGAACAGAAA
Statistics
Matches: 179, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
149 78 0.44
150 5 0.03
151 30 0.17
152 66 0.37
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATACGA
GTTGATTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAACCTCTC
GCAATATGAGTTGATATT
Found at i:93235489 original size:49 final size:49
Alignment explanation
Indices: 93235423--93235518 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
93235413 GAATTTTGAA
*
93235423 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
93235472 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
93235519 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:93235565 original size:121 final size:121
Alignment explanation
Indices: 93235351--93235590 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
93235341 TTTTTTTAAA
*
93235351 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
93235416 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* * *
93235472 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
93235537 TTTTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
93235591 CTCGCAATAT
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:93235581 original size:72 final size:72
Alignment explanation
Indices: 93235475--93235612 Score: 276
Period size: 72 Copynumber: 1.9 Consensus size: 72
93235465 CATTTTGAAC
93235475 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
1 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
93235540 TGAAAAT
66 TGAAAAT
93235547 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
1 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
93235612 T
66 T
93235613 TTTTTTGAAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (72 bp):
AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
TGAAAAT
Found at i:93235761 original size:54 final size:55
Alignment explanation
Indices: 93235661--93235766 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
93235651 GAACCGAGGC
*
93235661 TCAACACACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACACACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * * *
93235715 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACACACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
93235767 CAAAATTGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (55 bp):
TCAACACACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93235774 original size:12 final size:13
Alignment explanation
Indices: 93235746--93235778 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
93235736 GAGTTGATTC
93235746 TTGAACAACATAAA
1 TTGAA-AACATAAA
93235760 TTGAAAACA-AAA
1 TTGAAAACATAAA
93235772 TTGAAAA
1 TTGAAAA
93235779 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 10 0.53
13 4 0.21
14 5 0.26
ACGTcount: A:0.61, C:0.09, G:0.09, T:0.21
Consensus pattern (13 bp):
TTGAAAACATAAA
Found at i:93235900 original size:54 final size:54
Alignment explanation
Indices: 93235800--93235905 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
93235790 GACCTGAGGC
*
93235800 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
93235854 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93235906 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93236001 original size:140 final size:140
Alignment explanation
Indices: 93235617--93238767 Score: 1148
Period size: 140 Copynumber: 22.5 Consensus size: 140
93235607 AATTTTTTTT
*
93235617 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACACACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
93235681 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
93235746 TTGAACAACATAAA
127 TTGAACAACGTAAA
93235760 TTGAAAACA-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
93235824 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
93235889 ACAACGTAAA
131 ACAACGTAAA
* *
93235899 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
93235964 TTAATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
93236029 ACAACGTAAA
131 ACAACGTAAA
* *
93236039 TTGAAAACAAAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93236104 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
93236169 ACAACGTAAA
131 ACAACGTAAA
93236179 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* ** * * *** * *** *** * ** * *
93236244 TTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAGCGTGCC-C-CG-AGGCTCAACTCACCTC
66 CTGATTTTGAAAA-AGTAGAAATT-AAAA-GGTTCAACCCACCTCTCGCAATATGAGTTGA-TTC
* * **
93236304 TAGCAATATGA-GTTGATT
127 TTG-AACA--ACG-T-AAA
* * * ** * * * * *
93236322 TTGAAAAAGTAGAAATT-AAAAGGTTCAACC-CATCTCTCGCAATATGA-GTTGATTCTTGAACA
1 TTG-AAAA-CAGAAATTGAAAA---T--ACCTCAGC-GT-G--ACCTGAGGCTCA-AC-T-CACC
* * * * ** * * ** * ** * *
93236384 ACAT--AAAT-TGAAAACAGAAATTGAAAATACCT-CAGCGTGACCTGAGGCTCAACTCACCTCT
52 TC-TCGCAATATG--AGCTGATTTTGAAAA-A-GTAGA-AATTAAA--AGGTTCAACCCACCTCT
* *
93236445 CGCAATATGAGCTGATT-TTGAA-AAAGTAGAAA
109 CGCAATATGAGTTGATTCTTGAACAACGT--AAA
* * *** * * ** ** * * * * * ** *
93236477 TT--AAA-AG--GTTCAACCCACTTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA-ATT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAATA-T
** ** * ** * ** * * *
93236533 GAAAATAGAAATTGAAAATACCTTAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
63 G-AGCT-GATTTTGAAAA-A--GTAGAAATTA--AAAGGTTCAACCCACCTCTCGCAATATGAGT
*
93236597 TGATT-TTGAA-AAAGTAGAAA
121 TGATTCTTGAACAACGT--AAA
* * *** * ** ** * * * * * ** *
93236617 TT--AAA-AG--GTTCAACCCACCTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA-ATT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAATA-T
* * ** * ** * ** * * *
93236673 GAAAAC-AAAATTGAAAATACCTCAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
63 G--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATATGAGT
*
93236736 TGATT-TTGAA-AAAGTAGAAA
121 TGATTCTTGAACAACGT--AAA
* * *** * ** ** * * * * * ** *
93236756 TT--AAA-AG--GTTCAACCCACCTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA-ATT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAATA-T
* * ** * ** * ** * *
93236812 GAAAACAGAAATTGAAAATACCTCAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA--
63 G--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATATGAGT
*
93236874 -G----TTG-A-AA--TTAA
121 TGATTCTTGAACAACGTAAA
* * * * *
93236885 ---AACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
93236947 TTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGCTTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
93237012 ACAACATAAA
131 ACAACGTAAA
93237022 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
**
93237087 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
93237152 ACAACGTAAA
131 ACAACGTAAA
* *
93237162 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
93237227 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAATCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
93237292 ACAACGTAAA
131 ACAACGTAAA
*
93237302 TTGAAAACAAAAATTG-AAA-ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
**
93237365 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTTACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
93237430 ACAACGTAAA
131 ACAACGTAAA
93237440 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
** * * *** * *** *** * ** * *
93237505 CTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAGCGTGCC-C-CG-AGGCTCAACTCACCTC
66 CTGATTTTGAAAA-AGTAGAAATT-AAAA-GGTTCAACCCACCTCTCGCAATATGAGTTGA-TTC
* * **
93237565 TAGCAATATGA-GTTGATT
127 TTG-AACA--ACG-T-AAA
* * * ** * * * * *
93237583 TTGAAAAAGTAGAAATT-AAAAGGTTCAACC-CATCTCTCGCAATATGA-GTTGATTCTTGAACA
1 TTG-AAAA-CAGAAATTGAAAA---T--ACCTCAGC-GT-G--ACCTGAGGCTCA-AC-T-CACC
* * * * ** * * ** * ** * *
93237645 ACAT--AAAT-TGAAAACAGAAATTGAAAATACCT-CAGCGTGACCTGAGGCTCAACTCACCTCT
52 TC-TCGCAATATG--AGCTGATTTTGAAAA-A-GTAGA-AATTAAA--AGGTTCAACCCACCTCT
* *
93237706 CGCAATATGAGCTGATT-TTGAA-AAAGTAGAAA
109 CGCAATATGAGTTGATTCTTGAACAACGT--AAA
* * *** * * ** ** * * * * * ** *
93237738 TT--AAA-AG--GTTCAACCCACTTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA-ATT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAATA-T
* * ** * ** * ** * * *
93237794 GAAAACAGAAATTGAAAATACCTTAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
63 G--AGCTGATTTTGAAAA-A--GTAGAAATTA--AAAGGTTCAACCCACCTCTCGCAATATGAGT
*
93237858 TGATT-TTGAA-AAAGTAGAAA
121 TGATTCTTGAACAACGT--AAA
* * *** * ** ** * * * * * ** *
93237878 TT--AAA-AG--GTTCAACCCACCTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA-ATT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAATA-T
* ** ** * ** * ** * * *
93237934 GAAAACAAAAATTGAAAATACCTCAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
63 G--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATATGAGT
*
93237998 TGATT-TTGAA-AAAGTAGAAA
121 TGATTCTTGAACAACGT--AAA
* * *** * ** ** * * * * * ** *
93238018 TT--AAA-AG--GTTCAACCCACCTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA-ATT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAATA-T
* * ** * ** * ** * *
93238074 GAAAACAGAAATTGAAAATACCTCAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA--
63 G--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATATGAGT
*
93238136 -G----TTG-A-AA--TTAA
121 TGATTCTTGAACAACGTAAA
* * * *
93238147 ---AACACA-AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
93238208 TTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGCTTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
93238273 ACAACATAAA
131 ACAACGTAAA
93238283 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
**
93238348 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
93238413 ACAACGTAAA
131 ACAACGTAAA
*
93238423 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
93238488 CTGATTTTAAAAAAGTAGAAATTAAAAGGTTCAATCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
93238553 ACAACGTAAA
131 ACAACGTAAA
*
93238563 TTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93238628 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
93238693 ACAACGTAAA
131 ACAACGTAAA
93238703 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93238768 TTGAAATTAA
Statistics
Matches: 2558, Mismatches: 300, Indels: 303
0.81 0.09 0.10
Matches are distributed among these distances:
125 25 0.01
126 27 0.01
127 5 0.00
128 9 0.00
129 18 0.01
130 22 0.01
131 24 0.01
132 17 0.01
133 14 0.01
134 9 0.00
135 2 0.00
136 3 0.00
137 5 0.00
138 144 0.06
139 301 0.12
140 1668 0.65
141 41 0.02
142 7 0.00
143 14 0.01
144 24 0.01
145 16 0.01
147 2 0.00
148 10 0.00
149 12 0.00
150 6 0.00
151 6 0.00
152 20 0.01
153 8 0.00
154 25 0.01
155 22 0.01
156 6 0.00
157 20 0.01
158 8 0.00
159 6 0.00
160 12 0.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:93236040 original size:54 final size:54
Alignment explanation
Indices: 93235940--93236045 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
93235930 GACCTGAGGC
*
93235940 TCAACTCACCTCTCACAATATGAGTTAATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCACAATATGAGTTAATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
93235994 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCACAATATGAGTTAATT-TTGAA-AAAGTAAAATTGAAAA
93236046 CAAAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCACAATATGAGTTAATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93236180 original size:54 final size:54
Alignment explanation
Indices: 93236080--93236185 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93236070 GACCTGAGGC
*
93236080 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93236134 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93236186 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93236310 original size:72 final size:71
Alignment explanation
Indices: 93236176--93236319 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 71
93236166 TGAACAACGT
* * * *
93236176 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
93236241 GAGTTG
66 GAGTTG
*
93236247 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
93236312 TGAGTTG
65 TGAGTTG
93236319 A
1 A
93236320 TTTTGAAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
71 8 0.12
72 59 0.88
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:93236338 original size:631 final size:632
Alignment explanation
Indices: 93235539--93239336 Score: 7126
Period size: 631 Copynumber: 6.0 Consensus size: 632
93235529 GAGTTGAATT
* * * * * **
93235539 TTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * ** *
93235604 TTGAATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACACA
66 TTGAA-------ATTAAAACACAAAAATTGAAAATACCTCAGC--GTGCCCCGAGGCTCAACTCA
* *
93235669 CCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAAT
122 CCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAAT
93235734 ATGAGTTGATTCTTGAACAACATAAATTGAAAACA-AAATTGAAAATACCTCAGCGTGACCTGAG
187 ATGAGTTGATTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAG
93235798 GCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAC
252 GCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAC
93235863 TTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGC
317 TTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGC
* * *
93235928 GTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTGAAAAAGTAGAAATTAAAAGG
382 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGG
93235993 TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAA
447 TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAA
*
93236058 ATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGA
512 ATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGA
93236123 AATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
577 AATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
93236179 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93236244 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
*
93236309 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCATCTCTCGCAATATGAGTTGA
131 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
93236374 TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
196 TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
93236439 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAA
261 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAA
*
93236504 TATGAGTTGATTCTTGAACAACGTAAATTGAAAATAGAAATTGAAAATACCTTAGCGTGACCTGA
326 TATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGA
93236569 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA
391 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA
93236634 CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAAC-AAAATTGAAAATACCTCAG
456 CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAG
93236698 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
521 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
93236763 GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
586 GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
93236810 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93236875 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
*
93236940 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGC
131 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
93237005 TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
196 TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
*
93237070 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAA
261 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAA
93237135 TATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGA
326 TATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGA
* *
93237200 GGCTTAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAATCCA
391 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA
93237265 CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTG-AAA-ACCTCAG
456 CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAG
93237328 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
521 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
**
93237393 GTTCAACTTACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
586 GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
93237440 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
93237505 CTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
*
93237570 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCATCTCTCGCAATATGAGTTGA
131 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
93237635 TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
196 TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
93237700 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAA
261 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAA
93237765 TATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGA
326 TATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGA
93237830 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA
391 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA
93237895 CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAG
456 CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAG
93237960 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
521 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
93238025 GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
586 GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
93238072 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93238137 TTGAAATTAAAACAC-AAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
*
93238201 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGC
131 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
93238266 TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
196 TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
*
93238331 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAA
261 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAA
93238396 TATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGA
326 TATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGA
* *
93238461 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTAAAAAAGTAGAAATTAAAAGGTTCAATCCA
391 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA
93238526 CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAG
456 CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAG
93238591 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
521 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
93238656 GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
586 GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
93238703 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93238768 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
93238833 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
131 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
93238898 TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
196 TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
* *
93238963 A-CTCTCGCAATAAGAGCTGATTTTGAAAAAGTAGAAATTAAAATGTTCAACCCACTTCTCGCAA
261 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAA
*
93239027 TATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAGATACCTTAGCGTGACCTGA
326 TATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGA
93239092 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA
391 GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA
93239157 CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAG
456 CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAG
93239222 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
521 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
93239287 GTTCAA-CCACCTCTCGCAATATGAGTTGATTCTTGAACAACG-AAA
586 GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
93239332 TTGAA
1 TTGAA
93239337 TAGCTTAGCG
Statistics
Matches: 3102, Mismatches: 51, Indels: 21
0.98 0.02 0.01
Matches are distributed among these distances:
629 8 0.00
630 655 0.21
631 1693 0.55
632 656 0.21
633 27 0.01
640 63 0.02
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (632 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
TTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAA
TATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGA
GGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA
CCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAG
CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAG
GTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
Found at i:93236392 original size:54 final size:55
Alignment explanation
Indices: 93236292--93236397 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
93236282 GCCCCGAGGC
* *
93236292 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * * *
93236346 TCAACCCATCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
93236398 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93236404 original size:13 final size:13
Alignment explanation
Indices: 93236377--93236410 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93236367 GAGTTGATTC
*
93236377 TTGAACAACATAAA
1 TTGAA-AACAGAAA
93236391 TTGAAAACAGAAA
1 TTGAAAACAGAAA
93236404 TTGAAAA
1 TTGAAAA
93236411 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:93236532 original size:54 final size:54
Alignment explanation
Indices: 93236432--93236537 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
93236422 GACCTGAGGC
*
93236432 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
93236486 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93236538 TAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93236546 original size:13 final size:13
Alignment explanation
Indices: 93236528--93236552 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93236518 TGAACAACGT
93236528 AAATTGAAAATAG
1 AAATTGAAAATAG
93236541 AAATTGAAAATA
1 AAATTGAAAATA
93236553 CCTTAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:93236553 original size:352 final size:351
Alignment explanation
Indices: 93235896--93236595 Score: 1258
Period size: 352 Copynumber: 2.0 Consensus size: 351
93235886 TGAACAACGT
* * * *
93235896 AAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCACAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATAT
93235961 GAGTTAATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGTTAATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
* *
93236026 TGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCT
131 TGAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
93236091 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
196 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
93236156 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
261 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
93236221 CAACTCACCTCTCGCAATATGAGTTG
326 CAACTCACCTCTCGCAATATGAGTTG
*
93236247 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCT-AGCAAT
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCA-CAAT
* *
93236311 ATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCATCTCTCGCAATATGAGTTGATT
64 ATGAGTTAATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
*
93236376 CTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
129 CTTGAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
*
93236441 CTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATA
194 CTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATA
* *
93236506 TGAGTTGATTCTTGAACAACGTAAATTGAAAATAGAAATTGAAAATACCTTAGCGTGACCTGAGG
259 TGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGG
93236571 CTCAACTCACCTCTCGCAATATGAG
324 CTCAACTCACCTCTCGCAATATGAG
93236596 CTGATTTTGA
Statistics
Matches: 334, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
351 9 0.03
352 325 0.97
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.25
Consensus pattern (351 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATAT
GAGTTAATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
TGAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
CAACTCACCTCTCGCAATATGAGTTG
Found at i:93236672 original size:54 final size:54
Alignment explanation
Indices: 93236572--93236677 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93236562 GACCTGAGGC
*
93236572 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93236626 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93236678 CAAAATTGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93236811 original size:54 final size:54
Alignment explanation
Indices: 93236711--93236816 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93236701 GACCTGAGGC
*
93236711 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93236765 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93236817 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93236941 original size:72 final size:71
Alignment explanation
Indices: 93236807--93236950 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 71
93236797 TGAACAACGT
* * * *
93236807 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
93236872 GAGTTG
66 GAGTTG
*
93236878 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
93236943 TGAGTTG
65 TGAGTTG
93236950 A
1 A
93236951 TTTTGAAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
71 8 0.12
72 59 0.88
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:93237023 original size:54 final size:55
Alignment explanation
Indices: 93236923--93237028 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
93236913 GCCCCGAGGC
* *
93236923 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * * *
93236977 TCAACCCACCTCTCGCAATATGAGTTGCTTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
93237029 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93237035 original size:13 final size:13
Alignment explanation
Indices: 93237008--93237041 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93236998 GAGTTGCTTC
*
93237008 TTGAACAACATAAA
1 TTGAA-AACAGAAA
93237022 TTGAAAACAGAAA
1 TTGAAAACAGAAA
93237035 TTGAAAA
1 TTGAAAA
93237042 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:93237184 original size:352 final size:351
Alignment explanation
Indices: 93236541--93237226 Score: 1264
Period size: 352 Copynumber: 2.0 Consensus size: 351
93236531 TTGAAAATAG
* * *
93236541 AAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATTTTGA
*
93236606 AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
66 AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAA
93236671 TTGAAAACAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
131 TTGAAAACAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
*
93236736 TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAA
196 TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAACTCTCGCAATATGAGTTGATTCTTGAA
93236801 CAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCG
261 CAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCG
93236866 CAATATGAGTTGAAATTAAAACACAA
326 CAATATGAGTTGAAATTAAAACACAA
* *
93236892 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATTTTGA
*
93236957 AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGCTTCTTGAACAACATAAA
66 AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAA
93237022 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
131 TTGAAAACA-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
93237087 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAATATGAGTTGATTCTTGA
195 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAACTCTCGCAATATGAGTTGATTCTTGA
* *
93237152 ACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTTAACTCACCTCTC
260 ACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
93237217 GCAATATGAG
325 GCAATATGAG
93237227 CTGATTTTGA
Statistics
Matches: 323, Mismatches: 11, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
351 132 0.41
352 191 0.59
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (351 bp):
AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATTTTGA
AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAA
TTGAAAACAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAACTCTCGCAATATGAGTTGATTCTTGAA
CAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGAAATTAAAACACAA
Found at i:93237441 original size:54 final size:54
Alignment explanation
Indices: 93237341--93237446 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93237331 GACCTGAGGC
93237341 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
93237395 TCAACTTACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93237447 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (54 bp):
TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93237571 original size:72 final size:71
Alignment explanation
Indices: 93237437--93237576 Score: 226
Period size: 72 Copynumber: 2.0 Consensus size: 71
93237427 TGAACAACGT
* * * *
93237437 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
93237502 GAGCTG
66 GAGCTG
*
93237508 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
93237573 TGAG
65 TGAG
93237577 TTGATTTTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 8 0.13
72 55 0.87
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGCTG
Found at i:93237653 original size:54 final size:55
Alignment explanation
Indices: 93237553--93237658 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
93237543 GCCCCGAGGC
* *
93237553 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * * *
93237607 TCAACCCATCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
93237659 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93237665 original size:13 final size:13
Alignment explanation
Indices: 93237638--93237671 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93237628 GAGTTGATTC
*
93237638 TTGAACAACATAAA
1 TTGAA-AACAGAAA
93237652 TTGAAAACAGAAA
1 TTGAAAACAGAAA
93237665 TTGAAAA
1 TTGAAAA
93237672 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:93237793 original size:54 final size:54
Alignment explanation
Indices: 93237693--93237798 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
93237683 GACCTGAGGC
*
93237693 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
93237747 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93237799 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93237814 original size:352 final size:349
Alignment explanation
Indices: 93237159--93237860 Score: 1233
Period size: 352 Copynumber: 2.0 Consensus size: 349
93237149 TGAACAACGT
* * * * * *
93237159 AAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTTAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
*
93237224 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAATCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
93237289 TGAACAACGTAAATTGAAAACAAAAATTGAAAACCTCAGCGTGACCTGAGGCTCAACTCACCTCT
131 TGAACAACATAAATTGAAAACAAAAATTGAAAACCTCAGCGTGACCTGAGGCTCAACTCACCTCT
**
93237354 CGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTTACCTCTCGCAATATGAG
196 CGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
93237419 TTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA
261 TTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA
93237484 ACTCACCTCTCGCAATATGAGCTG
326 ACTCACCTCTCGCAATATGAGCTG
*
93237508 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
* *
93237573 TGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCATCTCTCGCAATATGAGTTGATTC
65 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
93237638 TTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
130 TTGAACAACATAAATTGAAAACAAAAATTG-AAA-ACCTCAGCGTGACCTGAGGCTCAACTCACC
*
93237703 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATAT
193 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATAT
*
93237768 GAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGC
258 GAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGC
93237833 TCAACTCACCTCTCGCAATATGAGCTG
323 TCAACTCACCTCTCGCAATATGAGCTG
93237860 A
1 A
93237861 TTTTGAAAAA
Statistics
Matches: 334, Mismatches: 16, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
349 8 0.02
350 139 0.42
351 3 0.01
352 184 0.55
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (349 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
TGAACAACATAAATTGAAAACAAAAATTGAAAACCTCAGCGTGACCTGAGGCTCAACTCACCTCT
CGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAG
TTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA
ACTCACCTCTCGCAATATGAGCTG
Found at i:93237933 original size:54 final size:54
Alignment explanation
Indices: 93237833--93237938 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93237823 GACCTGAGGC
*
93237833 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93237887 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93237939 CAAAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93238073 original size:54 final size:54
Alignment explanation
Indices: 93237973--93238078 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93237963 GACCTGAGGC
*
93237973 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93238027 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93238079 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93238185 original size:71 final size:71
Alignment explanation
Indices: 93238069--93238220 Score: 234
Period size: 71 Copynumber: 2.1 Consensus size: 71
93238059 TGAACAACGT
* * *
93238069 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
93238134 GAGTTG
66 GAGTTG
*
93238140 AAATT-AAAACACAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTGAAAACA-AAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
93238204 TGAGTTG
65 TGAGTTG
**
93238211 ATTTTGAAAA
1 AAATTGAAAA
93238221 AGTAGAAATT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
70 6 0.08
71 63 0.86
72 4 0.05
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.23
Consensus pattern (71 bp):
AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:93238284 original size:54 final size:55
Alignment explanation
Indices: 93238184--93238289 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
93238174 GCCCCGAGGC
* *
93238184 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * * *
93238238 TCAACCCACCTCTCGCAATATGAGTTGCTTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
93238290 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93238296 original size:13 final size:13
Alignment explanation
Indices: 93238269--93238302 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93238259 GAGTTGCTTC
*
93238269 TTGAACAACATAAA
1 TTGAA-AACAGAAA
93238283 TTGAAAACAGAAA
1 TTGAAAACAGAAA
93238296 TTGAAAA
1 TTGAAAA
93238303 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:93238342 original size:491 final size:486
Alignment explanation
Indices: 93237160--93240591 Score: 3197
Period size: 491 Copynumber: 7.0 Consensus size: 486
93237150 GAACAACGTA
* * *
93237160 AATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTTAACTCACCTCTCGCAATATG
1 AATT-AAAACAAAAATTGAAAATACC-TAG-GTG-CCAGAGGCTCAACTCACCTCTCGCAATATG
* * *
93237225 AGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAATCCACCTCTCGCAATATGAGTTGATTCTT
62 AGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAAACCACCTCTCGCAATATGAGTTGCTTCTT
*
93237290 GAACAACGTAAATTGAAAACAAAAATTG-AAA-ACCTCAGCGTGACCTGAGGCTCAACTCACCTC
127 GAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
**
93237353 TCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTTACCTCTCGCAATATGA
192 TCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGA
93237418 GTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTC
257 GTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTC
** * *
93237483 AACTCACCTCTCGCAATATGAGCTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAGCGTGCC
322 AACTCACCTCTCGCAATATGAGCTGATTTTGAAAA-AGTAGAAATT---AA-A----AG-GT---
* * *
93237546 CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATT-TTGAA-AAAGTAGAAATT--AAA-AG-
374 -------TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT--AAATTGAAAACAGA
* * *** * * ** ** * * * * *
93237605 -GTTCAACCCATCTC-TCGCAATATGA-G-T----TGA-TTCTTG-AACA--A-CATA
430 AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC-TG
* *
93237650 AATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
1 AATT-AAAACAAAAATTGAAAATACCT-AG-GTG-CCAGAGGCTCAACTCACCTCTCGCAATATG
* * * *
93237715 AGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTT
62 AGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAAACCACCTCTCGCAATATGAGTTGCTTCTT
* * *
93237780 GAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTC
127 GAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
93237845 TCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGA
192 TCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGA
*
93237910 GTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTC
257 GTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTC
93237975 AACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCT
322 AACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCT
93238040 CGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGA
387 CGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGA
*
93238105 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
452 CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
* *
93238140 AAATTAAAACACAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATAT
1 -AATTAAAACA-AAAATTGAAAATACCT-AG-GTG-CCAGAGGCTCAACTCACCTCTCGCAATAT
*
93238205 GAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGCTTCT
61 GAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAAACCACCTCTCGCAATATGAGTTGCTTCT
*
93238270 TGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
126 TGAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
**
93238335 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAATATG
191 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
*
93238400 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCT
256 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
* *
93238465 CAACTCACCTCTCGCAATATGAGCTGATTTTAAAAAAGTAGAAATTAAAAGGTTCAATCCACCTC
321 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
*
93238530 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
386 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTG
93238595 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
451 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
*** * * * * *
93238631 -ATTTTGA-AAAAGTAG-AAAT---TA------AAAGGTTCAACCCACCTCTCGCAATATGAGTT
1 AATTAAAACAAAAATTGAAAATACCTAGGTGCCAGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * ** * ** **
93238684 GATTCTTGAACAACGT--AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA
66 GATT-TTGAA-AAAGTAGAAATT--AAA-AG--GTTCAAACCACCTC-TCGCAATATGA-G-T--
* * * * ** * * *
93238747 ACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCG
119 --T-GCTTCTTG-AACA--ACAT-AAATTGAAA-ACAAAAATTGAAAATACCTCAGCGTGACCTG
* *
93238812 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCC
176 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCC
*
93238877 ACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCA
241 ACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCA
*
93238942 GCGTGACCTGAGGCTCAACTCA-CTCTCGCAATAAGAGCTGATTTTGAAAAAGTAGAAATTAAAA
306 GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAA
* *
93239006 TGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGA
371 GGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGA
* *
93239071 AGATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
436 AAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
*** * * * * *
93239122 -ATTTTGA-AAAAGTAG-AAAT---TA------AAAGGTTCAACCCACCTCTCGCAATATGAGTT
1 AATTAAAACAAAAATTGAAAATACCTAGGTGCCAGAGGCTCAACTCACCTCTCGCAATATGAGTT
* ** * * ** * ** **
93239175 GATTCTTGAACAACGTAAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAG--GC-T
66 GATT-TTGAA-AAAGT--A--GAAATTAAAAGGTTCAAACCACCTC-TCGCAATATGAGTTGCTT
* * * * ** ** * ** * ** *
93239236 C---AACTCACCTCTCGCAATATG--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTC
124 CTTGAA--CAAC-AT--AAAT-TGAAAACAAAAATTGAAAATACCTCAG-CGTGACCTGAGGCTC
* * * *
93239291 AAC-CACCTCTCGCAATATGAGTTGATTCTTGAACAACGAAATTGAATAGCTTAGCGTGACCTGA
182 AACTCACCTCTCGCAATATGAGCTGATT-TTG-A-AA--AAGTAGAA-A--TTA-----A---AA
* * * * *
93239355 GGCTCAACTCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAGAAATT--AAA-AG--GTT
231 GGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT--AAATTGAAAACAGAAATT
* * * ** ** * * * * ** * * * **
93239413 -CAACTCACCTC-TCGCAATATGA-GCTGATTCTTGAAC-AACGTAA-ATTGAAAACAGAAATTG
294 GAAAAT-ACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAATA-TG--AGCTGATTTTG
* ** * ** * *
93239473 AAAATACATCAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG-TGA-TCTTGAACAA
353 AAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA
* * * **
93239535 CGTAAATTGAAAACACAAATTGAAAATAACTTCAGCGTGACCTCAGGCAAAACTCACCTCTCGCA
413 CGTAAATTGAAAACAGAAATTGAAAAT-ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
*
93239600 ATATGAGTTG
477 ATATGAGCTG
* *
93239610 AATTAAAACACAAAATTGAAAATACCTCAGGTGCCCCGAGGCTCAAACTCACCTCTAGCAATATG
1 AATTAAAACA-AAAATTGAAAATACCT-AGGTG-CCAGAGGCTC-AACTCACCTCTCGCAATATG
*
93239675 AGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGCTTCTT
62 AGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAAACCACCTCTCGCAATATGAGTTGCTTCTT
93239740 GAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
127 GAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
**
93239805 TCGCAATATGAGCTGATTTTTGAAAAAGTAGAAATTAAAAGGTTCAA-CCAATTCTCGCAATATG
192 TCGCAATATGAGCTGA-TTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
*
93239869 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAA-TGAAAATACCTTAGCGTGACCTGAGGCT
256 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
93239933 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
321 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
*
93239998 TCCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGT
386 T-CGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGT
93240063 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
450 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
*** * * * * *
93240100 -ATTTTGA-AAAAGTAG-AAAT---TA------AAAGGTTCAACCCACCTCTCGCAATATGAGTT
1 AATTAAAACAAAAATTGAAAATACCTAGGTGCCAGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * ** * ** **
93240153 GATTAGTGAACAACGT--AAATTGAAAACAGAAATTTAAAATACCTCAGCGTGACCTGAGGCTCA
66 GATT-TTGAA-AAAGTAGAAATT--AAA-AG--GTTCAAACCACCTC-TCGCAATATGA-G-T--
* * * ** * * *
93240216 ACTCACCTCTTGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCG
119 --T-GCTTCTTG-AACA--ACAT-AAATTGAAA-ACAAAAATTGAAAATACCTCAGCGTGACCTG
* *
93240281 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCC
176 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCC
* *
93240346 A-CTCTCGCAATATGAGCTGATTCTTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCA
241 ACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCA
93240410 GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAA
306 GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAA
* *
93240475 GGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACACCGTAAATTGAAAACAGAAATTGA
371 GGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGA
* *
93240540 AAATACCTTATCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
436 AAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
93240591 A
1 A
93240592 TTTTGAAAAA
Statistics
Matches: 2497, Mismatches: 285, Indels: 318
0.81 0.09 0.10
Matches are distributed among these distances:
472 23 0.01
473 11 0.00
474 103 0.04
475 23 0.01
476 22 0.01
477 23 0.01
478 3 0.00
479 31 0.01
480 22 0.01
481 9 0.00
482 17 0.01
483 16 0.01
484 3 0.00
485 16 0.01
486 19 0.01
487 68 0.03
488 108 0.04
489 77 0.03
490 228 0.09
491 951 0.38
492 532 0.21
493 19 0.01
494 17 0.01
495 9 0.00
496 1 0.00
497 3 0.00
498 20 0.01
499 12 0.00
500 14 0.01
501 10 0.00
502 10 0.00
503 14 0.01
504 37 0.01
505 24 0.01
506 2 0.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (486 bp):
AATTAAAACAAAAATTGAAAATACCTAGGTGCCAGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTGAAAAAGTAGAAATTAAAAGGTTCAAACCACCTCTCGCAATATGAGTTGCTTCTTGAAC
AACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGC
AATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTG
ATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACT
CACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCA
ATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTG
AGGCTCAACTCACCTCTCGCAATATGAGCTG
Found at i:93238704 original size:54 final size:54
Alignment explanation
Indices: 93238604--93238709 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93238594 GACCTGAGGC
*
93238604 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93238658 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93238710 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93238834 original size:72 final size:71
Alignment explanation
Indices: 93238700--93238843 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 71
93238690 TGAACAACGT
* * * *
93238700 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
93238765 GAGTTG
66 GAGTTG
*
93238771 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
93238836 TGAGTTG
65 TGAGTTG
93238843 A
1 A
93238844 TTTTGAAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
71 8 0.12
72 59 0.88
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:93238916 original size:54 final size:55
Alignment explanation
Indices: 93238816--93238921 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
93238806 GCCCCGAGGC
* *
93238816 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
93238870 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
93238922 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93238928 original size:13 final size:13
Alignment explanation
Indices: 93238901--93238934 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93238891 GAGTTGATTC
*
93238901 TTGAACAACATAAA
1 TTGAA-AACAGAAA
93238915 TTGAAAACAGAAA
1 TTGAAAACAGAAA
93238928 TTGAAAA
1 TTGAAAA
93238935 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:93239055 original size:54 final size:53
Alignment explanation
Indices: 93238956--93239060 Score: 124
Period size: 54 Copynumber: 1.9 Consensus size: 53
93238946 GACCTGAGGC
*
93238956 TCAACTCACTCTCGCAATAAGAGCTGATTTTGAAAAAGTAGAAATT-AAAATGT
1 TCAACCCACTCTCGCAATAAGAGCTGATTTTGAAAAAGTA-AAATTGAAAATGT
* * *
93239009 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCAC-TCTCGCAATAAGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93239061 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
53 8 0.18
54 23 0.52
55 9 0.20
56 4 0.09
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (53 bp):
TCAACCCACTCTCGCAATAAGAGCTGATTTTGAAAAAGTAAAATTGAAAATGT
Found at i:93239195 original size:54 final size:54
Alignment explanation
Indices: 93239095--93239200 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93239085 GACCTGAGGC
*
93239095 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93239149 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93239201 CAAAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93239217 original size:140 final size:140
Alignment explanation
Indices: 93238771--93246877 Score: 3998
Period size: 140 Copynumber: 57.6 Consensus size: 140
93238761 ATATGAGTTG
* * * *
93238771 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTGAAA-ACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
93238836 TGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
65 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
93238901 TTGAACAACAT
130 TTGAACAACGT
* *
93238912 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCA-CTCTCGCAATAA
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
93238976 GAGCTGATTTTGAAAAAGTAGAAATTAAAATGTTCAACCCACTTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93239041 TGAACAACGT
131 TGAACAACGT
* * *
93239051 AAATTGAAAACAGAAATTGAAGATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93239116 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93239181 TGAACAACGT
131 TGAACAACGT
93239191 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93239256 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAA-CCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93239320 TGAACAAC--
131 TGAACAACGT
* *
93239328 -----G-------AAATTG--AATAGCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
93239379 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGCTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93239444 TGAACAACGT
131 TGAACAACGT
* *
93239454 AAATTGAAAACAGAAATTGAAAATACATCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * ** * ** **
93239519 GAG-TGATCTTGAACAACGTAAATTGAAAACACAAATTGAAAATAACTTCAGCGTGACCTCAGGC
66 GAGCTGATTTTGAA-AAAGT--A--G-------AAATT--AAA-AGGTTCAAC-CCACCTCTCGC
* * * * *
93239583 AA-A--A-CTCACCTCTCGCAATATGA-GTT
115 AATATGAGTTGA-TTCTTG-AACA--ACG-T
* * * *
93239609 GAATT-AAAACACAAAATTGAAAATACCTCAG-GTGCCCCGAGGCTCAAACTCACCTCTAGCAAT
1 AAATTGAAAACA-AAAATTGAAAATACCTCAGCGTGACCTGAGGCTC-AACTCACCTCTCGCAAT
* *
93239672 ATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGCTT
64 ATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
*
93239737 CTTGAACAACAT
129 CTTGAACAACGT
93239749 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
**
93239814 GAGCTGATTTTTGAAAAAGTAGAAATTAAAAGGTTCAA-CCAATTCTCGCAATATGAGTTGATTC
66 GAGCTGA-TTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
93239878 TTGAACAACGT
130 TTGAACAACGT
* *
93239889 AAATTGAAAACAGAAA-TGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93239953 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCCGCAATATGAGTTGATTC
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCT-CGCAATATGAGTTGATTC
93240018 TTGAACAACGT
130 TTGAACAACGT
93240029 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
**
93240094 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTAG
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93240159 TGAACAACGT
131 TGAACAACGT
* * *
93240169 AAATTGAAAACAGAAATTTAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTTGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* ** * * *** * *** *** * ** *
93240234 GAGTTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAGCGTGCC-C-CG-AGGCTCAACTCAC
66 GAGCTGATTTTGAAAA-AGTAGAAATT-AAAA-GGTTCAACCCACCTCTCGCAATATGAGTTGA-
* * *
93240294 CTCTAGCAATATGA-GTT
127 TTCTTG-AACA--ACG-T
** *** * ** *** * * * * *
93240311 GATTTTGAAAA-AGTAGAAATT-AAAA-GGTTCAAC-CCACTCTCGCAATATGAGCTGA-TTCTT
1 -AAATTGAAAACA--A-AAATTGAAAATACCTCAGCGTGAC-CT-G-AGGCTCAACTCACCTCTC
* * ** * * ** * *** * *
93240371 GAACAACATAAATTGAAAACAGAAATTGAAAATACCT-CAGCGTGACCTGAGGCTCAACTCACCT
59 G--C-A-AT--A-TG--AGCTGATTTTGAAAA-A-GTAGA-AATTAAAA--GGTTCAACCCACCT
* *
93240435 CTCGCAATATGAGCTGATT-TTGAA-AAAGT
110 CTCGCAATATGAGTTGATTCTTGAACAACGT
** * * *** * * ** ** * * * * * * *
93240464 --A--GAAATTAAAAGGTTCAACCCACTTC-TCGCAATATGA-GTTGATTCTTGAACAC-CGTAA
1 AAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAA
* * ** *** ** * *
93240522 -ATTGAAAACAGAAATTG-AAAA-TACCTTATCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
63 TA-TG--AGCTGATTTTGAAAAAGTA-GAAAT--T-A--AAAGGTTCAACCCACCTCTCGCAATA
* *
93240584 TGAGCTGATT-TTGAA-AAAGT
119 TGAGTTGATTCTTGAACAACGT
** * * *** * ** ** * * * * ** *
93240604 --A--GAAATTAAAAGGTTCAACCCACCTC-TCGCAATATGAGTTGGTTC--TTGAAC-AACGTA
1 AAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGA---GGCTCAACTCACCTCTCGCA
* ** ** * ** * ** * *
93240661 A-ATTGAAAACAAAAATTGAAAATACCTCAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATA
62 ATA-TG--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATA
* *
93240724 TGAGCTGATT-TTGAA-AAAGT
119 TGAGTTGATTCTTGAACAACGT
** * * *** * ** ** * * * * * ** *
93240744 --A--GAAATTAAAAGGTTCAACCCACCTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA
1 AAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAA
* * ** * ** * ** * *
93240802 -ATTGAAAACAGAAATTGAAAATACCTCAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
63 TA-TG--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATAT
93240865 GA---G----TTG-A-AA--T
120 GAGTTGATTCTTGAACAACGT
* * * * * *
93240875 TAA---AACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATCTCTAGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
93240937 GAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
93241002 TGAACAACAT
131 TGAACAACGT
*
93241012 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
93241077 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
93241142 TGAACACCGT
131 TGAACAACGT
* * *
93241152 AAATTGAAAAAAAAAATTAAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93241217 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93241282 TGAACAACGT
131 TGAACAACGT
*
93241292 AAATTGAAAACAAAAATTGAAAAAACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93241357 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTTCAACCCACCTCTCGCAATATGAGTTGATTC
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTGATTC
93241422 TTGAACAACGT
130 TTGAACAACGT
* *
93241433 AAATTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* ** * * *** * *** *** * ** *
93241498 GAGTTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAGCGTGCC-C-CG-AGGCTCAACTCAC
66 GAGCTGATTTTGAAAA-AGTAGAAATT-AAAA-GGTTCAACCCACCTCTCGCAATATGAGTTGA-
* * *
93241558 CTCTAGCAATATGA-GTT
127 TTCTTG-AACA--ACG-T
** * * ** * * *
93241575 GATTTTGAAAA-AGTAGAAATT-AAAAGGTTCAACC-CACCTCTCGCAATATGA-GTTGATTCTT
1 -AAATTGAAAACA--A-AAATTGAAAA---T--ACCTCAGC-GT-G--ACCTGAGGCTCA-AC-T
* ** * * * ** * * ** * *** * *
93241636 GAACAACAT--AAAT-TGAAAACAGAAATTGAAAATACCT-CAGCGTGACCTGAGGCTCAACTCA
51 -CACCTC-TCGCAATATG--AGCTGATTTTGAAAA-A-GTAGA-AATTAAAA--GGTTCAACCCA
* * *
93241697 CCTCTCGAAATATGAGCTGATT-TTGAA-AAAGT
107 CCTCTCGCAATATGAGTTGATTCTTGAACAACGT
** * * *** * * ** ** * * * * * ** *
93241729 --A--GAAATTAAAAGGTTCAACCCACTTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA
1 AAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAA
*** ** * ** * ** * *
93241787 -ATTGAAAAAAGAAATTGAAAATACCTTAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
63 TA-TG--AGCTGATTTTGAAAA-A--GTAGAAATTA--AAAGGTTCAACCCACCTCTCGCAATAT
* *
93241850 GAGCTGATT-TTGAA-AAAGT
120 GAGTTGATTCTTGAACAACGT
** * * ** * * ** ** * * *
93241869 --A--GAAATTAAAAGGTTCAAACCCACCTCTCGCAATATGAGTTGATTCTTGAA--CAAC-AT-
1 AAATTGAAAACAAAA-ATTGAAA-ATACCTC-AGC---GTGACCTGAGGC-TCAACTCACCTCTC
* * * * ** * * ** * *** * *
93241926 -AAATTTGAAAACAGAAATTGAAAATACCT-CAGCGTGACCTGAGGCTCAACTCACCTCTCGCAA
59 GCAATATG--AGCTGATTTTGAAAA-A-GTAGA-AATTAAAA--GGTTCAACCCACCTCTCGCAA
* *
93241989 TATGAGCTGATT-TTGAA-AAAGT
117 TATGAGTTGATTCTTGAACAACGT
** * * *** * ** ** * * * * * ** *
93242011 --A--GAAATTAAAAGGTTCAACCCACCTC-TCGCAATATGAGTTGAT-TATTGAAC-AACGTAA
1 AAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAG--GCTCAACTCACCTCTCGCAA
** ** * * ** * *** * *
93242069 -ATTGAAAATAGAAATTGAAAATACCT-CAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
63 TA-TG-AGCT-GATTTTGAAAA-A-GTAGA-AATTAAAA--GGTTCAACCCACCTCTCGCAATAT
93242132 GA---G----TTG-A-AA--T
120 GAGTTGATTCTTGAACAACGT
* * * *
93242142 TAA---AACACAAAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
93242203 GAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGCTTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
93242268 TGAACAACAT
131 TGAACAACGT
93242278 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *** * ** **
93242343 GAGTTGATTCTTGAACAACGTA-AAATTGAAAAGAAATTGAAAATACCTCAGCGTGACCTGAGGC
66 GAGCTGATT-TTGAA-AAAGTAGAAATT-AAAAG--GTTCAACCCACCTC-TCGCAATATGA-G-
* * * *
93242407 TCACTCACCTCTCGCAATATGA-GTTT
123 T---TGA-TTCTTG-AACA--ACG--T
* * *
93242433 GAAATT-AAAA-AAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 -AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
93242496 TGAGTTGATTTTGAAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
65 TGAGCTGATTTTG-AAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
*
93242561 CTCGAACAACGT
129 CTTGAACAACGT
*
93242573 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* ** * * *** * *** *** * ** *
93242638 GAGTTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAGCGTGCC-C-CG-AGGCTCAACTCAC
66 GAGCTGATTTTGAAAA-AGTAGAAATT-AAAA-GGTTCAACCCACCTCTCGCAATATGAGTTGA-
* * *
93242698 CTCTAGCAATATGA-GTT
127 TTCTTG-AACA--ACG-T
** * * * * * * *
93242715 GATTTTGAAAA-AGTAGAAATT-AAAAGGTTCAACC-CACCTCTCACAAT-ATGAGTTGATTCTT
1 -AAATTGAAAACA--A-AAATTGAAAA---T--ACCTCAGC-GTGAC-CTGA-G-GCTCA-AC-T
* ** * * * * * * ** * ** * *
93242776 GAACAACAT--AAAT-TGAAAACAGGTATTGAAAATACCTCAG-CGTGACCTGAGGCTCAACTCA
51 -CACCTC-TCGCAATATG--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCA
* *
93242837 CCTCTCGCAATATGAGCTGATT-TTGAA-AAAGT
107 CCTCTCGCAATATGAGTTGATTCTTGAACAACGT
** * * *** * * ** ** * * * * * * *
93242869 --A--GAAATTAAAAGGTTCAACCCACTTC-TCGCAATATGA-GTTGATTCTTGAACAC-CGTAA
1 AAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAA
* * ** * ** * ** * *
93242927 -ATTGAAAACAGAAATTGAAAATACCTTAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
63 TA-TG--AGCTGATTTTGAAAA-A--GTAGAAATTA--AAAGGTTCAACCCACCTCTCGCAATAT
* *
93242990 GAGCTGATT-TTGAA-AAAGT
120 GAGTTGATTCTTGAACAACGT
** * *** * ** ** * * * * * ** *
93243009 --A--GAAATTAAAAGATTCAACCCACCTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA
1 AAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCG-CA
* * * ** ** * ** * ** * * *
93243067 ATTTAAAACAAAAATTGAAAATACCTCAG-CGTGACCTGAGGCTCAACTCACCCCTCGCAATATG
62 ATAT-GAGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATATG
* *
93243131 AGCTGATT-TTGAA-AAAGT
121 AGTTGATTCTTGAACAACGT
** * * *** ** ** * * * * * ** *
93243149 --A--GAAATTAAAAGGTTCAACCCACCTCA-CGCAATATGA-GTTGATTCTTGAAC-AACGTAA
1 AAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAA
* * ** * ** * ** * * *
93243207 -ATTGAAAACAGAAATTGAAAATACCTCAG-CGTGACCTGATGCTCAACTCACCTCTCGCAATAT
63 TA-TG--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATAT
93243270 GA---G----TTG-A-AA--T
120 GAGTTGATTCTTGAACAACGT
* * * * *
93243280 TAA---AACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
93243342 GAGTTGATTTTGAAAAAGTAGAAATTAAAAAGTTCAACCCAGCTCTCGCAATATGAGTTGCTTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
93243407 TGAACAACAT
131 TGAACAACGT
*
93243417 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
**
93243482 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93243547 TGAACAACGT
131 TGAACAACGT
* * * *
93243557 AAATTGAAAACAGAAATTGAGAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
93243622 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTCATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93243687 TGAACAACGT
131 TGAACAACGT
* * *
93243697 AAATTGAAAACAGAAATTGAAAATACCTTAGCGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93243762 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93243827 TGAACAACGT
131 TGAACAACGT
*
93243837 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGAAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
93243902 GAGCTTATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93243967 TGAACAACGT
131 TGAACAACGT
* * *
93243977 AAATTGAAAACAGAAATTGAATATACCTCAGCGTTACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* ** * * *** * *** *** * ** *
93244042 GAGTTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAGCGTGCC-C-CG-AGGCTCAACTCAC
66 GAGCTGATTTTGAAAA-AGTAGAAATT-AAAA-GGTTCAACCCACCTCTCGCAATATGAGTTGA-
* * **
93244102 CTCTAGCTATATGA-GTT
127 TTCTTG--A-ACAACG-T
** *** * ** *** * * * *
93244119 GATTTTGAAAA-AGTAGAAATT-AAAA-GGTTCAAC-CCACCTCTCGCTATATGAGTTGA-TTCT
1 -AAATTGAAAACA--A-AAATTGAAAATACCTCAGCGTGACCTGAGGCT-CA--A-CTCACCTCT
* * * ** * * ** * *** * *
93244179 TGAACAACATAAATTGAAAACAGAAATTGAAAATACCT-CAGCGTGACCTGAGGCTCAACTCACC
58 CG--C-A-AT--A-TG--AGCTGATTTTGAAAA-A-GTAGA-AATTAAAA--GGTTCAACCCACC
* *
93244243 TCTCGCAATATGAGCTGATT-TTGAA-AAAGT
109 TCTCGCAATATGAGTTGATTCTTGAACAACGT
** * * *** * * ** ** * * * * * ** *
93244273 --A--GAAATTAAAAGGTTCAACCCACTTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA
1 AAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAA
* * ** * ** * ** *
93244331 -ATTGAAAACAGAAATTGAAAATACCTTAG-CGTGACCTGAGGCTC-ACCTCACCTCTCGCAATA
63 TA-TG--AGCTGATTTTGAAAA-A--GTAGAAATTA--AAAGGTTCAACC-CACCTCTCGCAATA
* * *
93244393 TGAGCTGATT-TTTAA-AAAGT
119 TGAGTTGATTCTTGAACAACGT
** * * *** * * * * * * * ** *
93244413 --A--GAAATTAAAAGGTTCAACCCACCTCTCGCATTA--TGA-GTTCATTCTTGAAC-AACGTA
1 AAATTGAAAACAAAA-ATTGAAAATACCTC-AGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCA
**** ** * * ** * *** * *
93244470 A-ATTGAAAAAAAAAATTGAAAATACCT-CAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
62 ATA-TG--AGCTGATTTTGAAAA-A-GTAGA-AATTAAAA--GGTTCAACCCACCTCTCGCAATA
* *
93244533 TGAGCTGATT-TTGAA-AAAGT
119 TGAGTTGATTCTTGAACAACGT
** * * *** * ** ** * * * * * ** *
93244553 --A--GAAATTAAAAGGTTCAACCCACCTC-TCGCAATATGA-GTTGATTCTTGAAC-AACGTAA
1 AAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAGGCTCA-AC-TCACCTCTCGCAA
* * ** * ** * ** * *
93244611 -ATTGAAAACAGAAATTGAAAATACCTCAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
63 TA-TG--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATAT
93244674 GA---G----TTG-A-AA--T
120 GAGTTGATTCTTGAACAACGT
* * * * *
93244684 TAA---AACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
93244746 GAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
93244811 TGAACAACAT
131 TGAACAACGT
* *
93244821 AAATTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
93244886 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
* *
93244951 CGAACAGCGT
131 TGAACAACGT
* * *
93244961 AAATTGAAAACAGATATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
93245026 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTTAACCCACCTCTCGCAATATAAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93245091 TGAACAACGT
131 TGAACAACGT
93245101 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *** * ** **
93245166 GAGTTGATTCTTGAACAACGT--AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAG
66 GAGCTGATT-TTGAA-AAAGTAGAAATT--AAA-AG--GTTCAACCCACCTC-TCGCAATATGA-
* * * *
93245229 GCTCAACTCACCTCTCGCAATATGA-GTT
122 G-T----TGA-TTCTTG-AACA--ACG-T
* * * *
93245257 GAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
1 -AAATTGAAA-ACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
* *
93245322 ATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAGCTCTCGCAATATGAGTTGATT
64 ATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
*
93245387 CTTGAACAACAT
129 CTTGAACAACGT
* *
93245399 AAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
93245464 GAGCTGATTTTTAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCACTATGAGTTCATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93245529 TGAACAACGT
131 TGAACAACGT
*
93245539 AAATTGAAAAAAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93245604 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
93245669 TGAACAACAT
131 TGAACAACGT
*
93245679 AAATTG-AAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
93245743 GAGCTGATTTTAAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93245808 TGAACAACGT
131 TGAACAACGT
* * *
93245818 AAATTGAAAACAGAAATTGAAAATAGCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
93245883 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93245948 TGAACAACGT
131 TGAACAACGT
*
93245958 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGC-ATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93246022 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93246087 TGAACAACGT
131 TGAACAACGT
*
93246097 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
93246162 GAGTTGATATTGAAAAAGTAGAAATTAAAAGGTTCAACCCACATCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
93246227 TGAACAACAT
131 TGAACAACGT
* *
93246237 AAATTGAAAACAGAAATTGAAAATACCTCCGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
93246302 GAGCTGATTTTAAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTTATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93246367 TGAACAACGT
131 TGAACAACGT
* *
93246377 AAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93246442 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93246507 TGAACAACGT
131 TGAACAACGT
93246517 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93246582 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93246647 TGAACAACGT
131 TGAACAACGT
* * *
93246657 AAATTGAAAACAGAAATTAAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93246722 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93246787 TGAACAACGT
131 TGAACAACGT
* *
93246797 AAATTGAAAACAGAAATTGAAAATACCTCAGCGAGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93246862 GAGCTGATTTTGAAAA
66 GAGCTGATTTTGAAAA
93246878 CAGAAATAAA
Statistics
Matches: 6638, Mismatches: 894, Indels: 869
0.79 0.11 0.10
Matches are distributed among these distances:
123 79 0.01
124 33 0.00
125 30 0.00
126 73 0.01
127 9 0.00
128 12 0.00
129 17 0.00
130 36 0.01
131 59 0.01
132 61 0.01
133 38 0.01
134 17 0.00
135 6 0.00
136 12 0.00
137 15 0.00
138 64 0.01
139 616 0.09
140 4056 0.61
141 415 0.06
142 142 0.02
143 59 0.01
144 61 0.01
145 58 0.01
146 19 0.00
147 24 0.00
148 33 0.00
149 41 0.01
150 21 0.00
151 32 0.00
152 28 0.00
153 49 0.01
154 134 0.02
155 90 0.01
156 41 0.01
157 44 0.01
158 81 0.01
159 15 0.00
160 18 0.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (140 bp):
AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
TGAACAACGT
Found at i:93239458 original size:54 final size:54
Alignment explanation
Indices: 93239358--93239463 Score: 162
Period size: 54 Copynumber: 1.9 Consensus size: 54
93239348 GACCTGAGGC
93239358 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
*
93239412 TCAACTCACCTCTCGCAATATGAGCTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93239464 CAGAAATTGA
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
54 35 0.73
55 9 0.19
56 4 0.08
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93239555 original size:84 final size:86
Alignment explanation
Indices: 93239412--93239607 Score: 324
Period size: 85 Copynumber: 2.3 Consensus size: 86
93239402 ATTAAAAGGT
*
93239412 TCAACTCACCTCTCGCAATATGAGCTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAG-TGATTCTTGAACAACGTAAATTGAAAACACAAATTGAAAA
*
93239477 T-ACATCAGCGTGACCTGAGGC
65 TAACATCAGCGTGACCTCAGGC
93239498 TCAACTCACCTCTCGCAATATGAGTGA-TCTTGAACAACGTAAATTGAAAACACAAATTGAAAAT
1 TCAACTCACCTCTCGCAATATGAGTGATTCTTGAACAACGTAAATTGAAAACACAAATTGAAAAT
*
93239562 AACTTCAGCGTGACCTCAGGC
66 AACATCAGCGTGACCTCAGGC
**
93239583 AAAACTCACCTCTCGCAATATGAGT
1 TCAACTCACCTCTCGCAATATGAGT
93239608 TGAATTAAAA
Statistics
Matches: 104, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
84 36 0.35
85 44 0.42
86 24 0.23
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.23
Consensus pattern (86 bp):
TCAACTCACCTCTCGCAATATGAGTGATTCTTGAACAACGTAAATTGAAAACACAAATTGAAAAT
AACATCAGCGTGACCTCAGGC
Found at i:93239626 original size:84 final size:82
Alignment explanation
Indices: 93239414--93239631 Score: 249
Period size: 85 Copynumber: 2.6 Consensus size: 82
93239404 TAAAAGGTTC
* ** *
93239414 AACTCACCTCTCGCAATATGAGCTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATA
1 AACTCACCTCTCGCAATATGAG-TGAAT-TAAAAC-AC-TAAATTGAAAACACAAATTGAAAATA
* **
93239479 CATCAGCGTGACCTGAGGCTC
62 CATCAGCGTGACCTCAGGCAA
* *
93239500 AACTCACCTCTCGCAATATGAGTGATCTTGAACAAC-GTAAATTGAAAACACAAATTGAAAATAA
1 AACTCACCTCTCGCAATATGAGTGA-ATT-AA-AACACTAAATTGAAAACACAAATTGAAAAT-A
*
93239564 CTTCAGCGTGACCTCAGGCAA
62 CATCAGCGTGACCTCAGGCAA
*
93239585 AACTCACCTCTCGCAATATGAGTTGAATTAAAACACAAAATTGAAAA
1 AACTCACCTCTCGCAATATGAG-TGAATTAAAACACTAAATTGAAAA
93239632 TACCTCAGGT
Statistics
Matches: 114, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
83 3 0.03
84 36 0.32
85 46 0.40
86 26 0.23
87 3 0.03
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (82 bp):
AACTCACCTCTCGCAATATGAGTGAATTAAAACACTAAATTGAAAACACAAATTGAAAATACATC
AGCGTGACCTCAGGCAA
Found at i:93239658 original size:70 final size:71
Alignment explanation
Indices: 93239539--93239689 Score: 193
Period size: 70 Copynumber: 2.1 Consensus size: 71
93239529 GAACAACGTA
* * *
93239539 AATTGAAAACACAAATTGAAAATAACTTCAGCGTGACCTCAGGCAAAACTCACCTCTCGCAATAT
1 AATTGAAAACACAAATTGAAAATAACCTCAGCGTGACCCCAGGCAAAACTCACCTCTAGCAATAT
93239604 GAGTTG
66 GAGTTG
*
93239610 AATT-AAAACACAAAATTGAAAAT-ACCTCAG-GTG-CCCCGAGGCTCAAACTCACCTCTAGCAA
1 AATTGAAAACAC-AAATTGAAAATAACCTCAGCGTGACCCC-AGGC-AAAACTCACCTCTAGCAA
93239671 TATGAGTTG
63 TATGAGTTG
*
93239680 ATTTTGAAAA
1 A-ATTGAAAA
93239690 AGTAGAAATT
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
68 3 0.04
69 7 0.10
70 39 0.56
71 17 0.24
72 4 0.06
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (71 bp):
AATTGAAAACACAAATTGAAAATAACCTCAGCGTGACCCCAGGCAAAACTCACCTCTAGCAATAT
GAGTTG
Found at i:93239765 original size:13 final size:13
Alignment explanation
Indices: 93239738--93239771 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93239728 GAGTTGCTTC
*
93239738 TTGAACAACATAAA
1 TTGAA-AACAAAAA
93239752 TTGAAAACAAAAA
1 TTGAAAACAAAAA
93239765 TTGAAAA
1 TTGAAAA
93239772 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.62, C:0.09, G:0.09, T:0.21
Consensus pattern (13 bp):
TTGAAAACAAAAA
Found at i:93240033 original size:55 final size:54
Alignment explanation
Indices: 93239932--93240038 Score: 137
Period size: 55 Copynumber: 1.9 Consensus size: 54
93239922 GACCTGAGGC
*
93239932 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93239986 TCAACCCACCTCTCCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCT-CGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93240039 CAAAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
54 12 0.26
55 21 0.46
56 9 0.20
57 4 0.09
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93240173 original size:54 final size:54
Alignment explanation
Indices: 93240073--93240178 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
93240063 GACCTGAGGC
* *
93240073 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTGTGAAAAAGTA-AAATTGAAAAGGT
* *
93240127 TCAACCCACCTCTCGCAATATGAGTTGATTAGTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-GTGAA-AAAGTAAAATTGAAAA
93240179 CAGAAATTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 33 0.73
55 8 0.18
56 4 0.09
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTGTGAAAAAGTAAAATTGAAAAGGT
Found at i:93240326 original size:632 final size:632
Alignment explanation
Indices: 93239498--93245180 Score: 8888
Period size: 632 Copynumber: 9.0 Consensus size: 632
93239488 GACCTGAGGC
* *
93239498 TCAACTCACCTCTCGCAATATGAG-TGA-TCTTGAACAACGTAAATTGAAAACACAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
* * **
93239561 TAACTTCAGCGTGACCTCAGGCAAAACTCACCTCTCGCAATATGAGTTG-AATTAAAACAC-AAA
66 T-ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAA
93239624 ATTGAAAATACCTCAG-GTGCCCCGAGGCTCAAACTCACCTCTAGCAATATGAGTTGATTTTGAA
130 ATTGAAAATACCTCAGCGTGCCCCGAGGCTC-AACTCACCTCTAGCAATATGAGTTGATTTTGAA
*
93239688 AAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGCTTCTTGAACAACATAAAT
194 AAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAAT
*
93239753 TGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
259 TGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
*
93239818 TGATTTTTGAAAAAGTAGAAATTAAAAGGTTCAA-CCAATTCTCGCAATATGAGTTGATTCTTGA
324 TGA-TTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
93239882 ACAACGTAAATTGAAAACAGAAA-TGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTC
388 ACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTC
93239946 GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCCGCAATATGAG
453 GCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCT-CGCAATATGAG
93240011 TTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA
517 TTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA
93240076 ACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
582 ACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
** *
93240127 TCAACCCACCTCTCGCAATATGAGTTGATTAGTGAACAACGTAAATTGAAAACAGAAATTTAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
*
93240192 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGAAATTAAAACACAAAAA
66 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
93240257 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
131 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
*
93240322 AGTAGAAATTAAAAGGTTCAACCCA-CTCTCGCAATATGAGCTGATTCTTGAACAACATAAATTG
196 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTG
93240386 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
261 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
93240451 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACA
326 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACA
* *
93240516 CCGTAAATTGAAAACAGAAATTGAAAATACCTTATCGTGACCTGAGGCTCAACTCACCTCTCGCA
391 ACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
*
93240581 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGG
456 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
93240646 TTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
521 TTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
93240711 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
586 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
93240758 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
93240823 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
66 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
*
93240888 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATCTCTAGCAATATGAGTTGATTTTGAAAA
131 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
93240953 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTG
196 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTG
93241018 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
261 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
93241083 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACA
326 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACA
* * * *
93241148 CCGTAAATTGAAAAAAAAAATTAAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
391 ACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
93241213 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
456 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
*
93241278 TTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAAAACCTCAGCGTGACCTGAGGCTCAACTC
521 TTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
93241343 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTT
586 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGG-T
*
93241391 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAATAGAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
93241456 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
66 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
93241521 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
131 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
93241586 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTG
196 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTG
*
93241651 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGAAATATGAGCTG
261 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
93241716 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACA
326 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACA
*
93241781 ACGTAAATTGAAAAAAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
391 ACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
93241846 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAAACCCACCTCTCGCAATATGAGTTG
456 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTC-AACCCACCTCTCGCAATATGAGTTG
* *
93241911 ATTCTTGAACAACATAAATTTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAAC
520 ATTCTTGAACAACGTAAA-TTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAAC
93241976 TCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
584 TCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
* *
93242025 TCAACCCACCTCTCGCAATATGAGTTGATTATTGAACAACGTAAATTGAAAATAGAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
93242090 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
66 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
93242155 TTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
131 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
*
93242219 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGCTTCTTGAACAACATAAATTG
196 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTG
* *
93242284 AAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
261 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
* * * *** * * ** ** *
93242349 ATTCTTGAACAACGTA-AAATTGAAAAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCACTC
326 ATT-TTGAA-AAAGTAGAAATT-AAAAG--GTTCAACCCACTTC-TCGCAATATGA-G-T---TG
* * * * * * *
93242413 ACCTCTCGCAATATGA-GTTTGAAATT-AAAA-AAAAATTGAAAATACCTCAGCGTGCCCCGAGG
380 A-TTCTTG-AACA--ACG--T-AAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGG
* *
93242475 CTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAAGTAGAAATTAAAAGGTTCAACCCAC
438 CTCAACTCACCTCTCGCAATATGAGCTGATTTTG-AAAAAGTAGAAATTAAAAGGTTCAACCCAC
* *
93242540 CTCTCGCAATATGAGTTGATTCTCGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGC
502 CTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGC
* ** * *
93242605 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACA-CAAAAATTGAAAA
567 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAA-AGTAGAAATT---AA
93242668 TACCTCAGCGT
628 -A----AG-GT
* * *
93242679 GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATT-TTGAA-AAAGTAGAAATT--AAA-
1 ----------TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT--AAATTGAAAAC
* * *** * *** ** * * * * **
93242739 AG--GTTCAACCCACCTC-TCACAATATGA-G-T----TGA-TTCTTG-AACA--ACAT-AAATT
54 AGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT
* *** * * * *
93242790 GAAA-ACAGGTATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
119 AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGT
*
93242854 TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAA
184 TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAA
* * *
93242919 CACCGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCG
249 CAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCG
* *
93242984 CAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGATTCAACCCACCTCTCGCAATATGAGTT
314 CAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTT
* * *
93243049 GATTCTTGAACAACGTAAATTTAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAAC
379 GATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAAC
* *
93243114 TCACCCCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCACGC
444 TCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGC
*
93243179 AATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCT
509 AATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCT
* * ** * *
93243244 GATGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACA-CAAAAATTGAAAATACCTCA
574 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAA-AGTAGAAATT---AA-A----A
93243307 GCGT
630 G-GT
* * *
93243311 GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATT-TTGAA-AAAGTAGAAATT-AAAA-
1 ----------TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT--AAATTGAAAAC
* *** * * ** ** * * * * **
93243372 AG---TTCAACCCAGCTC-TCGCAATATGA-G-T----T-GCTTCTTG-AACA--ACAT-AAATT
54 AGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT
* * * * * *
93243422 GAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
119 AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGT
**
93243486 TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAATATGAGTTGATTCTTGAA
184 TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAA
* * *
93243551 CAACGTAAATTGAAAACAGAAATTGAGAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCG
249 CAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCG
* *
93243616 CAATACGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTT
314 CAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTT
* *
93243681 CATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGAGCTGAGGCTCAAC
379 GATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAAC
93243746 TCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGC
444 TCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGC
93243811 AATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCT
509 AATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCT
* *
93243876 GAGGCTCAACTCACCTCTCGAAATATGAGCTTATTTTGAAAAAGTAGAAATTAAAAGGT
574 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
*
93243935 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAATA
1 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
*
93244000 TACCTCAGCGTTACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
66 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
*
93244065 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCTATATGAGTTGATTTTGAAAA
131 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
*
93244130 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCTATATGAGTTGATTCTTGAACAACATAAATTG
196 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTG
93244195 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
261 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
93244260 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACA
326 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACA
*
93244325 ACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCACCTCACCTCTCGCA
391 ACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
* * *
93244390 ATATGAGCTGATTTTTAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCATTATGAGTTCA
456 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
*
93244455 TTCTTGAACAACGTAAATTGAAAAAAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
521 TTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
93244520 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
586 ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
93244567 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
93244632 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
66 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
93244697 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
131 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
93244762 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTG
196 AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTG
*
93244827 AAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
261 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
*
93244892 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTCGAACA
326 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACA
* *
93244957 GCGTAAATTGAAAACAGATATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
391 ACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
* *
93245022 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTTAACCCACCTCTCGCAATATAAGTTGA
456 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
93245087 TTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
521 TTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
*
93245152 ACCTCTCGCAATATGAGTTGATTCTTGAA
586 ACCTCTCGCAATATGAGCTGATT-TTGAA
93245181 CAACGTAAAT
Statistics
Matches: 4759, Mismatches: 213, Indels: 160
0.93 0.04 0.03
Matches are distributed among these distances:
614 33 0.01
615 9 0.00
616 6 0.00
619 8 0.00
620 6 0.00
621 1 0.00
622 1 0.00
624 2 0.00
625 2 0.00
626 1 0.00
627 5 0.00
628 3 0.00
629 24 0.01
630 79 0.02
631 551 0.12
632 2396 0.50
633 759 0.16
634 202 0.04
635 105 0.02
636 4 0.00
637 10 0.00
638 6 0.00
639 1 0.00
640 2 0.00
641 1 0.00
642 6 0.00
643 12 0.00
644 4 0.00
645 23 0.00
646 105 0.02
647 278 0.06
648 32 0.01
649 6 0.00
650 3 0.00
651 4 0.00
652 2 0.00
653 2 0.00
654 2 0.00
656 1 0.00
657 1 0.00
658 5 0.00
659 9 0.00
661 2 0.00
662 7 0.00
663 5 0.00
664 33 0.01
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (632 bp):
TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
AGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTG
AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACA
ACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
TTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
ACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
Found at i:93240384 original size:53 final size:55
Alignment explanation
Indices: 93240285--93240389 Score: 126
Period size: 53 Copynumber: 1.9 Consensus size: 55
93240275 GCCCCGAGGC
* * *
93240285 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
93240339 TCAACCCA-CTCTCGCAATATGAGCTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
93240390 CAGAAATTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
53 25 0.58
54 18 0.42
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93240396 original size:13 final size:13
Alignment explanation
Indices: 93240369--93240402 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93240359 GAGCTGATTC
*
93240369 TTGAACAACATAAA
1 TTGAA-AACAGAAA
93240383 TTGAAAACAGAAA
1 TTGAAAACAGAAA
93240396 TTGAAAA
1 TTGAAAA
93240403 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:93240664 original size:54 final size:54
Alignment explanation
Indices: 93240564--93240669 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
93240554 GACCTGAGGC
*
93240564 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
93240618 TCAACCCACCTCTCGCAATATGAGTTGGTTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93240670 CAAAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93240685 original size:491 final size:490
Alignment explanation
Indices: 93237789--93241219 Score: 3678
Period size: 491 Copynumber: 7.0 Consensus size: 490
93237779 TGAACAACGT
* *
93237789 AAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
93237854 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
66 GAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA-CTCTCGCAATATGAGTTGATTCT
* *
93237919 TGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
130 TGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
93237984 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
195 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
93238049 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
260 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
* *** * * *
93238114 CAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAATTGAAAATACCTCAGCGTGCCCC
325 CAACTCACCTCTCGCAATATGAGCTG--ATTTTGA-A-AAAGTAG-AAAT---T-A--------A
* * * * * ** *
93238179 GAGGCTCAACTCACCTCTAGCAATATGAGTTGATT-TTGAA-AAAGT--A--GAAATTAAAAGGT
373 AAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAA-AT
* *** * ** ** * * * * *
93238238 TCAACCCACCTC-TCGCAATATGA-G-T----T-GCTTCTTG-AACA--ACAT-
437 TGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
*
93238280 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
93238345 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAATATGAGTTGATTCT
66 GAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCC-ACTCTCGCAATATGAGTTGATTCT
* *
93238410 TGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCT
130 TGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
* *
93238475 CTCGCAATATGAGCTGATTTTAAAAAAGTAGAAATTAAAAGGTTCAATCCACCTCTCGCAATATG
195 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
*
93238540 AGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
260 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
93238605 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
325 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
*
93238670 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTG
390 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
*
93238735 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
455 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
* * * *
93238771 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
93238836 TGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
65 TGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCA-CTCTCGCAATATGAGTTGATTC
93238901 TTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCA-C
129 TTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
* * *
93238965 TCTCGCAATAAGAGCTGATTTTGAAAAAGTAGAAATTAAAATGTTCAACCCACTTCTCGCAATAT
194 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATAT
* *
93239030 GAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAGATACCTTAGCGTGACCTGAGGC
259 GAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGC
93239095 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCT
324 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCT
93239160 CTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGT
389 CTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGT
*
93239225 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
454 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
** * * * *
93239262 ATTTTGAAAA-AG---TAG-AAAT---T-A-----A---AAGGTTCAAC-CACCTCTCGCAATAT
1 AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *
93239309 GAGTTGATTCTTGAACAACGAAATTGAATAGCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGC
66 GAGTTGATT-TTG-A-AA--AAGTAGAA-A--TTA-----A---AAGGTTCAACCCA-CTCTCGC
* * * * * * * * ** *
93239374 AATATGAGCTGATT-TTGAAAAAGTAGAAATT--AAA-AG--GTT-CAACTCACCTC-TCGCAAT
114 AATATGAGTTGATTCTTGAACAA-CATAAATTGAAAACAGAAATTGAAAAT-ACCTCAGCGTGAC
* * * * * ** * * * ** * ** *
93239431 ATGA-GCTGATTCTTGAAC-AACGTAA-ATTGAAAACAGAAATTGAAAATACATCAG-CGTGACC
177 CTGAGGCTCA-AC-TCACCTCTCGCAATA-TG--AGCTGATTTTGAAAA-A-GT-AGAAATTA--
** * * *
93239492 TGAGGCTCAACTCACCTCTCGCAATATGAG-TGA-TCTTGAACAACGTAAATTGAAAACACAAAT
232 AAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAAT
* * ** * ***
93239555 TGAAAATAACTTCAGCGTGACCTCAGGCAAAACTCACCTCTCGCAATATGAGTTGAATTAAAACA
297 TGAAAAT-ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG-ATTTTGA-A
* * ** * * *
93239620 CAAAATTGAAAATACCTCAGGTGCCCCGAGGCTCAAACTCACCTCTAGCAATATGAGTTGATT-T
359 -AAAGTAG-AAAT---T-A-------AAAGGTTC-AACCCACCTCTCGCAATATGAGTTGATTCT
* ** * * *** * ** ** * *
93239684 TGAA-AAAGT--A--GAAATTAAAAGGTTCAACCCACCTC-TCGCAATATGA-G-T----T-GCT
410 TGAACAACGTAAATTGAAAACAAAA-ATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
* * *
93239736 TCTTG-AACA--ACAT-
474 TCTCGCAATATGAGATG
* *
93239749 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
93239814 GAGCTGATTTTTGAAAAAGTAGAAATTAAAAGGTTCAACCAATTCTCGCAATATGAGTTGATTCT
66 GAGTTGA-TTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTCTCGCAATATGAGTTGATTCT
* *
93239879 TGAACAACGTAAATTGAAAACAGAAA-TGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCT
130 TGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
93239943 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCCGCAATAT
195 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCT-CGCAATAT
*
93240008 GAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGC
259 GAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGC
93240073 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCT
324 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCT
** * *
93240138 CTCGCAATATGAGTTGATTAGTGAACAACGTAAATTGAAAACAGAAATTTAAAATACCTCAGCGT
389 CTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGT
* *
93240203 GACCTGAGGCTCAACTCACCTCTTGCAATATGAGTTG
454 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
* * * *
93240240 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
93240305 TGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTCTCGCAATATGAGCTGATTCT
65 TGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTCTCGCAATATGAGTTGATTCT
93240370 TGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
130 TGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
*
93240435 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATG
195 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
* * *
93240500 AGTTGATTCTTGAACACCGTAAATTGAAAACAGAAATTGAAAATACCTTATCGTGACCTGAGGCT
260 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
93240565 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
325 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
*
93240630 TCGCAATATGAGTTGGTTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
390 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
*
93240695 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
455 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
** * * * * *
93240731 ATTTTGAAAA-AG---TAG-AAAT---T-A-----A---AAGGTTCAACCCACCTCTCGCAATAT
1 AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *** *
93240779 GAGTTGATTCTTGAACAACGT--AAATTGAAAACAGAAATTGAAAATAC-CTCAGC-GTGACCTG
66 GAGTTGATT-TTGAA-AAAGTAGAAATT--AAA-AG--GTTCAACCCACTCTC-GCAAT-A--TG
* * * * ** * *
93240840 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
120 A-G-T----TGA-TTCTTG-AACA--ACAT-AAATTGAAA-ACAGAAATTGAAAATACCTCAGCG
* * * * *
93240905 TGCCCCGAGGCTCAACTCATCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGT
173 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
*
93240970 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTGAAAACAGAAATTGAAAA
238 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
93241035 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAA
303 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAA
* * *
93241100 ATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACACCGTAAATTGAAAAAAA
368 ATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAA
* *
93241165 AAATTAAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
433 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93241220 CTGATTTTGA
Statistics
Matches: 2507, Mismatches: 288, Indels: 289
0.81 0.09 0.09
Matches are distributed among these distances:
472 23 0.01
473 47 0.02
474 63 0.03
475 23 0.01
476 10 0.00
477 10 0.00
478 12 0.00
479 18 0.01
480 32 0.01
481 9 0.00
482 17 0.01
483 16 0.01
484 1 0.00
485 22 0.01
486 20 0.01
487 78 0.03
488 112 0.04
489 75 0.03
490 76 0.03
491 1026 0.41
492 669 0.27
493 9 0.00
494 16 0.01
495 7 0.00
496 3 0.00
497 1 0.00
498 17 0.01
499 9 0.00
500 2 0.00
501 7 0.00
502 4 0.00
503 12 0.00
504 35 0.01
505 24 0.01
506 2 0.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (490 bp):
AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTCTCGCAATATGAGTTGATTCTT
GAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
TCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGA
GTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTC
AACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCT
CGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGA
CCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
Found at i:93240804 original size:54 final size:54
Alignment explanation
Indices: 93240704--93240809 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93240694 GACCTGAGGC
*
93240704 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93240758 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93240810 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93240934 original size:72 final size:71
Alignment explanation
Indices: 93240800--93240943 Score: 225
Period size: 72 Copynumber: 2.0 Consensus size: 71
93240790 TGAACAACGT
* * * *
93240800 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
93240865 GAGTTG
66 GAGTTG
* *
93240871 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
93240936 TGAGTTG
65 TGAGTTG
93240943 A
1 A
93240944 TTTTGAAAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
71 8 0.12
72 58 0.88
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:93241016 original size:54 final size:55
Alignment explanation
Indices: 93240916--93241021 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
93240906 GCCCCGAGGC
* * *
93240916 TCAACTCATCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
93240970 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
93241022 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93241028 original size:13 final size:13
Alignment explanation
Indices: 93241001--93241034 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93240991 GAGTTGATTC
*
93241001 TTGAACAACATAAA
1 TTGAA-AACAGAAA
93241015 TTGAAAACAGAAA
1 TTGAAAACAGAAA
93241028 TTGAAAA
1 TTGAAAA
93241035 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:93241177 original size:352 final size:351
Alignment explanation
Indices: 93240520--93241219 Score: 1229
Period size: 352 Copynumber: 2.0 Consensus size: 351
93240510 TGAACACCGT
* * * * * *
93240520 AAATTGAAAACAGAAATTGAAAATACCTTATCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
*
93240585 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGGTTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
93240650 TGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
131 TGAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
93240715 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
196 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
* * *
93240780 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
261 AGTTGATTCTTGAACAACGTAAATTGAAAAAAAAAATTAAAAATACCTCAGCGTGACCTGAGGCT
93240845 CAACTCACCTCTCGCAATATGAGTTG
326 CAACTCACCTCTCGCAATATGAGTTG
* *
93240871 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
*
93240936 TGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
65 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
93241001 TTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
130 TTGAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
*
93241066 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATAT
195 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATAT
* *
93241131 GAGTTGATTCTTGAACACCGTAAATTGAAAAAAAAAATTAAAAATACCTTAGCGTGACCTGAGGC
260 GAGTTGATTCTTGAACAACGTAAATTGAAAAAAAAAATTAAAAATACCTCAGCGTGACCTGAGGC
93241196 TCAACTCACCTCTCGCAATATGAG
325 TCAACTCACCTCTCGCAATATGAG
93241220 CTGATTTTGA
Statistics
Matches: 330, Mismatches: 18, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
351 8 0.02
352 322 0.98
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (351 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
TGAACAACATAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
AGTTGATTCTTGAACAACGTAAATTGAAAAAAAAAATTAAAAATACCTCAGCGTGACCTGAGGCT
CAACTCACCTCTCGCAATATGAGTTG
Found at i:93241296 original size:54 final size:54
Alignment explanation
Indices: 93241196--93241301 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93241186 GACCTGAGGC
*
93241196 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93241250 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93241302 CAAAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93241322 original size:492 final size:491
Alignment explanation
Indices: 93238420--93241852 Score: 2989
Period size: 492 Copynumber: 7.0 Consensus size: 491
93238410 TGAACAACGT
* *
93238420 AAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
93238485 GAGCTGATTTTAAAAAAGTAGAAATTAAAAGGTTCAATCCACCTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
93238550 TGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
131 TGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
93238615 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
196 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
*
93238680 AGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCT
261 AGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
* ** * *
93238745 CAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAGCGTGC
326 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAA-AGTAGAAATT---AA-A----AG-GT--
* * * **
93238808 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATT-TTGAA-AAAGT--A--GAAATTAAAA
379 --------TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAA
* * *** * ** ** * * * * *
93238867 GGTTCAACCCACCTC-TCGCAATATGA-G-T----TGA-TTCTTG-AACA--ACAT-
436 -ATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
* *
93238912 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCA-CTCTCGCAATAA
1 AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
93238976 GAGCTGATTTTGAAAAAGTAGAAATTAAAATGTTCAACCCACTTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
* * *
93239041 TGAACAACGTAAATTGAAAACAGAAATTGAAGATACCTTAGCGTGACCTGAGGCTCAACTCACCT
131 TGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
93239106 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
196 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
93239171 AGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
261 AGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
93239236 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAA-CCACCTC
326 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
* *
93239300 TCGCAATATGAGTTGATTCTTGAACAAC-------G-------AAATTG--AATAGCTTAGCGTG
391 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
*
93239349 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
456 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
** * * * * ** * * * *
93239385 ATTTTGAAAAAGTAGAAATT-AAAAGGTTCAACTCACCTCTCGCAATATGA-GCTGATTCTTGAA
1 AAATT-AAAAA-CAGAAATTGAAAA---T-ACCTCAGC-GT-G--ACCTGAGGCTCA-AC-TCAC
** * * * ** * ** * ** * *
93239448 C-AACGTAA-ATTGAAAACAGAAATTGAAAATACATCAG-CGTGACCTGAGGCTCAACTCACCTC
54 CTCTCGCAATA-TG--AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTC
* *
93239510 TCGCAATATGAG-TGA-TCTTGAACAACGTAAATTGAAAACACAAATTGAAAATAACTTCAGCGT
111 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAAT-ACCTCAGCGT
* ** * *** * *
93239573 GACCTCAGGCAAAACTCACCTCTCGCAATATGAGTTGAATTAAAACACAAAATTGAAAATACCTC
175 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG-ATTTTGA-A-AAAGTAG-AAAT---T-
** * * * *
93239638 AGGTGCCCCGAGGCTCAAACTCACCTCTAGCAATATGAGTTGATT-TTGAA-AAAGT--A--GAA
232 A-------AAAGGTTC-AACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAA
** * * *** * ** ** * * *
93239697 ATTAAAAGGTTCAACCCACCTC-TCGCAATATGAGTTGCTTCTTGAA--CAAC-AT--AAAT-TG
289 AACAAAA-ATTGAAAATACCTCAGCGTGACCTGAG--GC-TC---AACTCACCTCTCGCAATATG
* ** ** * ** * ** * * *
93239755 AAAACAAAAATTGAAAATACCTCAG-CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
347 --AGCTGATTTTGAAAA-A-GT-AGAAATTA--AAAGGTTCAACCCACCTCTCGCAATATGAGTT
* * ** * * * *
93239819 GATTTTTGAA-AAAGT--A--GAAATTAAAAGGTTCAACCAAT-TCTC-GCAAT-A--TGA-G-T
405 GATTCTTGAACAACGTAAATTGAAAACAAAA-ATTGAA--AATACCTCAGC-GTGACCTGAGGCT
* * * *
93239872 ----TGA-TTCTTG-AACA--ACG-T-
466 CAACTCACCTCTCGCAATATGA-GATG
* *
93239889 AAATTGAAAACAGAAA-TGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
93239953 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCCGCAATATGAGTTGATTC
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCT-CGCAATATGAGTTGATTC
93240018 TTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
130 TTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
93240083 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATAT
195 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATAT
** * *
93240148 GAGTTGATTAGTGAACAACGTAAATTGAAAACAGAAATTTAAAATACCTCAGCGTGACCTGAGGC
260 GAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGC
* * ** * *
93240213 TCAACTCACCTCTTGCAATATGAGTTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAGCGTG
325 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAA-AGTAGAAATT---AA-A----AG-GT-
* * * **
93240276 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATT-TTGAA-AAAGT--A--GAAATTAAA
379 ---------TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAA
* * *** * * * * *
93240335 AGGTTCAACCCACTCTC-GCAAT-A--TGA-GCT-GA-T----TCTTG-AACA--ACAT-
435 A-ATTGAAAATAC-CTCAGC-GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
*
93240380 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
93240445 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
* * * *
93240510 TGAACACCGTAAATTGAAAACAGAAATTGAAAATACCTTATCGTGACCTGAGGCTCAACTCACCT
131 TGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
93240575 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
196 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
*
93240640 AGTTGGTTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
261 AGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
93240705 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
326 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
*
93240770 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTG
391 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
*
93240835 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
456 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
* * * * *
93240871 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATCTCTAGCAATA
1 AAATTAAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
93240936 TGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
65 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
* *
93241001 TTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
130 TTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
*
93241066 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATAT
195 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATAT
* * * *
93241131 GAGTTGATTCTTGAACACCGTAAATTGAAAAAAAAAATTAAAAATACCTTAGCGTGACCTGAGGC
260 GAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGC
93241196 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCT
325 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCT
*
93241261 CTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAAAACCTCAGCGT
390 CTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGT
*
93241326 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
455 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
** * *
93241363 ATTTTGAAAAAGTAGAAATT---AA-A----AG-GT----T-----TCAACCCACCTCTCGCAAT
1 AAATT-AAAAA-CAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
* * * * *** * ** **
93241410 ATGAGTTGATTCTTGAACAACGT--AAATTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTG
64 ATGAGCTGATT-TTGAA-AAAGTAGAAATT--AAA-AG--GTTCAACCCACCTC-TCGCAATATG
* * * * *
93241473 AGGCTCAACTCACCTCTCGCAATATGA-GTTGAAATTAAAACACAAAAATTGAAAATACCTCAGC
121 A-G-T----TGA-TTCTTG-AACA--ACG-T-AAATTGAAA-ACAAAAATTGAAAATACCTCAGC
* * * *
93241537 GTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGG
173 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGG
* *
93241602 TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTGAAAACAGAAATTGAAA
238 TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAA
*
93241667 ATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGAAATATGAGCTGATTTTGAAAAAGTAGA
303 ATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGA
*
93241732 AATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAA-A
368 AATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACA
*
93241796 AGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
433 A-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93241853 CTGATTTTGA
Statistics
Matches: 2455, Mismatches: 304, Indels: 363
0.79 0.10 0.12
Matches are distributed among these distances:
461 3 0.00
462 6 0.00
463 3 0.00
464 3 0.00
468 2 0.00
469 4 0.00
470 3 0.00
471 1 0.00
472 25 0.01
473 40 0.02
474 44 0.02
475 53 0.02
476 12 0.00
477 21 0.01
478 27 0.01
479 20 0.01
480 29 0.01
481 15 0.01
482 10 0.00
483 14 0.01
484 7 0.00
485 13 0.01
486 5 0.00
487 49 0.02
488 71 0.03
489 53 0.02
490 53 0.02
491 645 0.26
492 683 0.28
493 333 0.14
494 12 0.00
495 6 0.00
496 2 0.00
497 1 0.00
498 22 0.01
499 13 0.01
500 13 0.01
501 5 0.00
502 19 0.01
503 16 0.01
504 40 0.02
505 30 0.01
506 1 0.00
507 4 0.00
508 4 0.00
509 2 0.00
513 1 0.00
514 3 0.00
515 5 0.00
517 3 0.00
518 3 0.00
519 3 0.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (491 bp):
AAATTAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
TGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
AGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
ACCTGAGGCTCAACTCACCTCTCGCAATATGAGATG
Found at i:93241437 original size:55 final size:55
Alignment explanation
Indices: 93241336--93241442 Score: 146
Period size: 55 Copynumber: 1.9 Consensus size: 55
93241326 GACCTGAGGC
*
93241336 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGTT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGTT
* *
93241391 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93241443 TAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
55 33 0.72
56 9 0.20
57 4 0.09
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGTT
Found at i:93241451 original size:13 final size:13
Alignment explanation
Indices: 93241433--93241457 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93241423 TGAACAACGT
93241433 AAATTGAAAATAG
1 AAATTGAAAATAG
93241446 AAATTGAAAATA
1 AAATTGAAAATA
93241458 CCTCAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:93241649 original size:54 final size:55
Alignment explanation
Indices: 93241549--93241654 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
93241539 GCCCCGAGGC
* *
93241549 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
93241603 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
93241655 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93241661 original size:13 final size:13
Alignment explanation
Indices: 93241634--93241667 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93241624 GAGTTGATTC
*
93241634 TTGAACAACATAAA
1 TTGAA-AACAGAAA
93241648 TTGAAAACAGAAA
1 TTGAAAACAGAAA
93241661 TTGAAAA
1 TTGAAAA
93241668 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:93241789 original size:54 final size:54
Alignment explanation
Indices: 93241689--93241794 Score: 126
Period size: 54 Copynumber: 1.9 Consensus size: 54
93241679 GACCTGAGGC
*
93241689 TCAACTCACCTCTCGAAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGAAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * * *
93241743 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGAAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93241795 AAGAAATTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
54 31 0.70
55 9 0.20
56 4 0.09
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGAAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93242071 original size:54 final size:54
Alignment explanation
Indices: 93241971--93242076 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93241961 GACCTGAGGC
*
93241971 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
93242025 TCAACCCACCTCTCGCAATATGAGTTGATTATTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
93242077 TAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:93242085 original size:13 final size:13
Alignment explanation
Indices: 93242067--93242091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93242057 TGAACAACGT
93242067 AAATTGAAAATAG
1 AAATTGAAAATAG
93242080 AAATTGAAAATA
1 AAATTGAAAATA
93242092 CCTCAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:93242282 original size:54 final size:55
Alignment explanation
Indices: 93242182--93242287 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
93242172 TGCCCGAGGC
* *
93242182 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * * *
93242236 TCAACCCACCTCTCGCAATATGAGTTGCTTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
93242288 CAAAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93242294 original size:13 final size:13
Alignment explanation
Indices: 93242267--93242300 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93242257 GAGTTGCTTC
*
93242267 TTGAACAACATAAA
1 TTGAA-AACAAAAA
93242281 TTGAAAACAAAAA
1 TTGAAAACAAAAA
93242294 TTGAAAA
1 TTGAAAA
93242301 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.62, C:0.09, G:0.09, T:0.21
Consensus pattern (13 bp):
TTGAAAACAAAAA
Found at i:93242476 original size:69 final size:70
Alignment explanation
Indices: 93242365--93242714 Score: 236
Period size: 72 Copynumber: 5.0 Consensus size: 70
93242355 GAACAACGTA
* * * *
93242365 AAATTGAAAAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTC-ACTCACCTCTCGCAATATGA
1 AAATTAAAAAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGA
93242429 GTTTG
66 GTTTG
*
93242434 AAATTAAAAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGA
1 AAATTAAAAAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGA
93242499 G-TTG
66 GTTTG
* ** * * * ** * * * * * * * *
93242503 -ATTTTGAAAAAAGTAGAAATTA--AAAG-GTTCAACCC-A-CCTC-TCGCA-ATATGAGTTGAT
1 AAATTAAAAAAAAATTGAAAATACCTCAGCG-T-GACCCGAGGCTCAACTCACCTCT-AG--CAA
* ****
93242560 TCTCGAACAACG
61 TAT-G-AGTTTG
* * *
93242572 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 -AAATT-AAAA-AAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
93242637 TGAG-TTG
63 TGAGTTTG
*
93242644 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATT-AAA-A-AAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
93242709 TGAGTT
63 TGAGTT
93242715 GATTTTGAAA
Statistics
Matches: 205, Mismatches: 54, Indels: 40
0.69 0.18 0.13
Matches are distributed among these distances:
63 2 0.01
64 5 0.02
65 4 0.02
66 7 0.03
67 4 0.02
68 17 0.08
69 44 0.21
70 20 0.10
71 11 0.05
72 58 0.28
73 12 0.06
74 4 0.02
75 7 0.03
76 4 0.02
77 4 0.02
78 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (70 bp):
AAATTAAAAAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGA
GTTTG
Found at i:93242789 original size:54 final size:55
Alignment explanation
Indices: 93242689--93242794 Score: 137
Period size: 54 Copynumber: 1.9 Consensus size: 55
93242679 GCCCCGAGGC
* *
93242689 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* *
93242743 TCAACCCACCTCTCA-CAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCT-AGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
93242795 CAGGTATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 33 0.73
55 12 0.27
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:93243069 original size:54 final size:54
Alignment explanation
Indices: 93242969--93243074 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
93242959 GACCTGAGGC
*
93242969 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAA-TTAAAAGAT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTTAAAAGAT
* *
93243023 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTTAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTTAAAA
93243075 CAAAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 31 0.67
55 11 0.24
56 4 0.09
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTTAAAAGAT
Found at i:93243298 original size:492 final size:492
Alignment explanation
Indices: 93241798--93243764 Score: 1901
Period size: 492 Copynumber: 4.0 Consensus size: 492
93241788 TTGAAAAAAG
* * *
93241798 AAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATTTTGA
* *
93241863 AAAAGTAGAAATTAAAAGGTTCAAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAA
66 AAAAGTAGAAATTAAAAAGTTC-AACCCAGCTCTCGCAATATGAGTTGATTCTTGAACAACATAA
93241928 ATTTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
130 A-TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
93241993 AGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTATT
194 AGCTGATTTTGAAAAAGTAGAAATTAAAAGATTCAACCCAACTCTCGCAATATGAGTTGATTCTT
* * *
93242058 GAACAACGTAAATTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
259 GAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCCC
* * ** * *
93242123 TCGCAATATGAGTTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAA
324 TCGCAATACGAGCTGATTTTGAAAA-AGTAGAAATT---AA-A----AG-GT---------TCAA
* * * * * ***
93242186 CTCACCTCTA-GCAATATGAGTTGATT-TTGAA-AAAGTAGAAATT--AAA-AG--GTTCAACCC
370 CCCACCTC-ACGCAATATGAGTTCATTCTTGAACAACGT--AAATTGAAAACAGAAATTGAAAAT
* ** ** * * * * ** *
93242243 ACCTC-TCGCAATATGA-G-T----T-GCTTCTTG-AACA--ACAT-AAATTGAAA-ACAA
432 ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAA
* * *
93242291 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTG
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATT-TTG
* * * *** * * ** ** * * *
93242356 AACAACGTA-AAATTGAAAAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCACTCACCTCTC
65 AA-AAAGTAGAAATT--AAA-AAGTTCAACCCAGCTC-TCGCAATATGA-G-T---TGA-TTCTT
* ** * * *
93242420 GCAATATGAGTTTGAAATT-AAAA-AAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTC
119 G-AACA--A-CAT-AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
* * * *
93242483 ACCTCTAGCAATATGAGTTGATTTTGAAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCA
179 ACCTCTCGCAATATGAGCTGATTTTG-AAAAAGTAGAAATTAAAAGATTCAACCCAACTCTCGCA
* *
93242548 ATATGAGTTGATTCTCGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTG
243 ATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTG
* * * ** * *
93242613 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACA-CAAAAATTGAAAATACCTCAG
308 AGGCTCAACTCACCCCTCGCAATACGAGCTGATTTTGAAAA-AGTAGAAATT---AA-A----AG
* * *
93242676 CGTGCCCCGAGGCTCAACTCACCTCTA-GCAATATGAGTTGATT-TTGAA-AAAGTAGAAATT--
364 -GT----------TCAACCCACCTC-ACGCAATATGAGTTCATTCTTGAACAACGT--AAATTGA
* * *** * *** ** * * * * **
93242736 AAA-AG--GTTCAACCCACCTC-TCACAATATGA-G-T----TGA-TTCTTG-AACA--ACAT-A
415 AAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
93242786 AATTGAAA-ACAG
480 AATTAAAACACAA
** * *
93242798 GTATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATTTTGA
* * *
93242863 AAAAGTAGAAATTAAAAGGTTCAACCCA-CTTCTCGCAATATGAGTTGATTCTTGAACACCGTAA
66 AAAAGTAGAAATTAAAAAGTTCAACCCAGC-TCTCGCAATATGAGTTGATTCTTGAACAACATAA
*
93242927 ATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
130 ATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
*
93242992 GCTGATTTTGAAAAAGTAGAAATTAAAAGATTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
195 GCTGATTTTGAAAAAGTAGAAATTAAAAGATTCAACCCAACTCTCGCAATATGAGTTGATTCTTG
*
93243057 AACAACGTAAATTTAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCCCT
260 AACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCCCT
*
93243122 CGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCACGCAATATGAG
325 CGCAATACGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCACGCAATATGAG
* *
93243187 TTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGATGCTCA
390 TTCATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCA
93243252 ACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAA
455 ACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAA
* *
93243290 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATTTTGA
*
93243355 AAAAGTAGAAATTAAAAAGTTCAACCCAGCTCTCGCAATATGAGTTGCTTCTTGAACAACATAAA
66 AAAAGTAGAAATTAAAAAGTTCAACCCAGCTCTCGCAATATGAGTTGATTCTTGAACAACATAAA
93243420 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
131 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
93243485 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAATATGAGTTGATTCTTGA
196 CTGATTTTGAAAAAGTAGAAATTAAAAGATTCAACCCAACTCTCGCAATATGAGTTGATTCTTGA
* * * *
93243550 ACAACGTAAATTGAAAACAGAAATTGAGAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTC
261 ACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCCCTC
*
93243615 GCAATACGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGT
326 GCAATACGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCACGCAATATGAGT
* *
93243680 TCATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGAGCTGAGGCTCAA
391 TCATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAA
93243745 CTCACCTCTCGCAATATGAG
456 CTCACCTCTCGCAATATGAG
93243765 CTGATTTTGA
Statistics
Matches: 1310, Mismatches: 116, Indels: 97
0.86 0.08 0.06
Matches are distributed among these distances:
473 1 0.00
474 32 0.02
475 5 0.00
476 7 0.01
477 2 0.00
479 9 0.01
480 5 0.00
481 1 0.00
482 1 0.00
484 2 0.00
485 2 0.00
486 2 0.00
487 4 0.00
488 3 0.00
489 1 0.00
490 4 0.00
491 13 0.01
492 588 0.45
493 130 0.10
494 10 0.01
495 8 0.01
496 14 0.01
497 11 0.01
498 1 0.00
499 1 0.00
500 1 0.00
501 1 0.00
502 9 0.01
503 12 0.01
504 6 0.00
505 66 0.05
506 181 0.14
507 174 0.13
508 3 0.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (492 bp):
AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATTTTGA
AAAAGTAGAAATTAAAAAGTTCAACCCAGCTCTCGCAATATGAGTTGATTCTTGAACAACATAAA
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGATTCAACCCAACTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCCCTC
GCAATACGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCACGCAATATGAGT
TCATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGAAATTAAAACACAA
Found at i:93243339 original size:72 final size:71
Alignment explanation
Indices: 93243205--93243348 Score: 225
Period size: 72 Copynumber: 2.0 Consensus size: 71
93243195 TGAACAACGT
* * * * *
93243205 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGATGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
93243270 GAGTTG
66 GAGTTG
*
93243276 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
93243341 TGAGTTG
65 TGAGTTG
93243348 A
1 A
93243349 TTTTGAAAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
71 8 0.12
72 58 0.88
ACGTcount: A:0.38, C:0.24, G:0.16, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:93243433 original size:13 final size:13
Alignment explanation
Indices: 93243406--93243439 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
93243396 GAGTTGCTTC
*
93243406 TTGAACAACATAAA
1 TTGAA-AACAGAAA
93243420 TTGAAAACAGAAA
1 TTGAAAACAGAAA
93243433 TTGAAAA
1 TTGAAAA
93243440 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:93243603 original size:772 final size:771
Alignment explanation
Indices: 93242644--93245606 Score: 4313
Period size: 772 Copynumber: 3.8 Consensus size: 771
93242634 ATATGAGTTG
* * * * *
93242644 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTGAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
* *
93242709 TGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCACAATATGAGTTGATTC
65 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
* **
93242774 TTGAACAACATAAATTGAAAACAGGTATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
130 TTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
*
93242839 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATAT
195 TCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATAT
* * * *
93242904 GAGTTGATTCTTGAACACCGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGC
260 GAGTTCATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGC
*
93242969 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGATTCAACCCACCT
325 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCT
*
93243034 CTCGCAATATGAGTTGATTCTTGAACAACGTAAATTTAAAACAAAAATTGAAAATACCTCAGCGT
390 CTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGT
*
93243099 GACCTGAGGCTCAACTCACCCCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTT
455 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTT
93243164 CAACCCACCTCACGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAAT
520 CAACCCACCTCACGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAAT
*
93243229 ACCTCAGCGTGACCTGATGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAAT
585 ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAAT
93243294 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA
650 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA
* *
93243359 GTAGAAATTAAAAAGTTCAACCCAGCTCTCGCAATATGAGTTGCTTCTTGAACAACAT
715 GTAGAAATTAAAAGGTTCAACCCA-CTCTCGCAATATGAGTTGATTCTTGAACAACAT
93243417 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
**
93243482 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAATTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
* *
93243547 TGAACAACGTAAATTGAAAACAGAAATTGAGAATACCTTAGCGTGACCTGAGGCTCAACTCACCT
131 TGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
*
93243612 CTCGCAATACGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
196 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
* * *
93243677 AGTTCATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGAGCTGAGGCT
261 AGTTCATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
93243742 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
326 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
93243807 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
391 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
* *
93243872 ACCTGAGGCTCAACTCACCTCTCGAAATATGAGCTTATTTTGAAAAAGTAGAAATTAAAAGGTTC
456 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTC
* *
93243937 AACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAATATA
521 AACCCACCTCACGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATA
*
93244002 CCTCAGCGTTACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATT
586 CCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATT
*
93244067 GAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCTATATGAGTTGATTTTGAAAAAG
651 GAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAG
*
93244132 TAGAAATTAAAAGGTTCAACCCACCTCTCGCTATATGAGTTGATTCTTGAACAACAT
716 TAGAAATTAAAAGGTTCAACCCA-CTCTCGCAATATGAGTTGATTCTTGAACAACAT
93244189 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
93244254 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
* *
93244319 TGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCACCTCACCT
131 TGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
* *
93244384 CTCGCAATATGAGCTGATTTTTAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCATTATG
196 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
*
93244449 AGTTCATTCTTGAACAACGTAAATTGAAAAAAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
261 AGTTCATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
93244514 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
326 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
*
93244579 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTG
391 TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
* ** * *
93244644 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACA-CAAAAATTGAAAATAC
456 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAA-AGTAGAAATT---AA-A-
* *
93244707 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTA-GCAATATGAGTTGATT-TTGAA-AAAGTAGAA
515 ---AG-GT----------TCAACCCACCTC-ACGCAATATGAGTTGATTCTTGAACAACGT--AA
* * *** * ** ** * * * *
93244769 ATT--AAA-AG--GTTCAACCCACCTC-TCGCAATATGA-G-T----TGA-TTCTTG-AACA--A
563 ATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
** * * * * * *
93244818 CAT-AAATTGAAA-ATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGC
628 GTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGC
*
93244881 AATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTG
693 AATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCAC-TCTCGCAATATGAGTTG
* * *
93244946 ATTCTCGAACAGCGT
757 ATTCTTGAACAACAT
* *
93244961 AAATTGAAAACAGATATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
93245026 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTTAACCCACCTCTCGCAATATAAGTTGATTCT
66 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
*
93245091 TGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
131 TGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
* * * * *** *
93245156 CTCGCAATATGAGTTGATTCTTGAACAACGT--AAATTGAAAACAGAAATTGAAAATACCTCAGC
196 CTCGCAATATGAGCTGATT-TTGAA-AAAGTAGAAATT--AAA-AG--GTTCAACCCACCTC-TC
** ** * * * *
93245219 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGA-GTTGAAATTAAAACACAAAAATTGAAAAT
253 GCAATATGA-G-T----TCA-TTCTTG-AACA--ACG-T-AAATTGAAA-ACAAAAATTGAAAAT
* * * *
93245283 ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGAAA
305 ACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAA
* * *
93245348 TTAAAAGGTTCAACCCAGCTCTCGCAATATGAGTTGATTCTTGAACAACATAAATTGAAAACAGA
370 TTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAA
* *
93245413 AATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTAA
435 AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAA
* * *
93245478 AAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCACTATGAGTTCATTCTTGAACAACGTAAAT
500 AAAGTAGAAATTAAAAGGTTCAACCCACCTCACGCAATATGAGTTGATTCTTGAACAACGTAAAT
* *
93245543 TGAAAAAAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
565 TGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93245607 CTGATTTTGA
Statistics
Matches: 1982, Mismatches: 142, Indels: 117
0.88 0.06 0.05
Matches are distributed among these distances:
771 11 0.01
772 1570 0.79
773 25 0.01
774 18 0.01
775 4 0.00
776 3 0.00
777 22 0.01
778 13 0.01
779 4 0.00
780 4 0.00
782 3 0.00
783 3 0.00
784 11 0.01
785 17 0.01
786 6 0.00
787 4 0.00
788 12 0.01
789 13 0.01
790 229 0.12
791 10 0.01
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (771 bp):
AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
TGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCT
CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
AGTTCATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCT
CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
TCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAAAAATTGAAAATACCTCAGCGTG
ACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTC
AACCCACCTCACGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATA
CCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATT
GAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAG
TAGAAATTAAAAGGTTCAACCCACTCTCGCAATATGAGTTGATTCTTGAACAACAT
Found at i:93243701 original size:54 final size:54
Alignment explanation
Indices: 93243601--93243706 Score: 126
Period size: 54 Copynumber: 1.9 Consensus size: 54
93243591 GACCTGAGGC
* *
93243601 TCAACTCACCTCTCGCAATACGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATACGAGCTCATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
93243655 TCAACCCACCTCTCGCAATATGAGTTCATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATACGAGCTCATT-TTGAA-AAAGTAAAATTGAAAA
93243707 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
54 31 0.70
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATACGAGCTCATTTTGAAAAAGTAAAATTGAAAAGGT
Done.