Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 294 of 325
Found at i:93779262 original size:20 final size:19
Alignment explanation
Indices: 93779234--93779285 Score: 88
Period size: 18 Copynumber: 2.8 Consensus size: 19
93779224 CCATTAAGCC
93779234 CCCCCAAAAAAAAACCTAA
1 CCCCCAAAAAAAAACCTAA
93779253 -CCCCAAAAAAAAACCTAA
1 CCCCCAAAAAAAAACCTAA
*
93779271 CCCCCCAAAAAAAAC
1 CCCCCAAAAAAAAAC
93779286 TAAAAAACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 18 0.58
19 13 0.42
ACGTcount: A:0.58, C:0.38, G:0.00, T:0.04
Consensus pattern (19 bp):
CCCCCAAAAAAAAACCTAA
Found at i:93779288 original size:18 final size:19
Alignment explanation
Indices: 93779233--93779285 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
93779223 CCCATTAAGC
93779233 CCCCCCAAAAAAAAACCTAA
1 CCCCCC-AAAAAAAACCTAA
*
93779253 -CCCCAAAAAAAAACCTAA
1 CCCCCCAAAAAAAACCTAA
93779271 CCCCCCAAAAAAAAC
1 CCCCCCAAAAAAAAC
93779286 TAAAAAACCC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 13 0.43
19 17 0.57
ACGTcount: A:0.57, C:0.40, G:0.00, T:0.04
Consensus pattern (19 bp):
CCCCCCAAAAAAAACCTAA
Found at i:93779837 original size:24 final size:23
Alignment explanation
Indices: 93779805--93779849 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
93779795 TATATATTTC
*
93779805 TTATGTATATATTCTTAAATACTA
1 TTATATATATATT-TTAAATACTA
93779829 TTATATATATATTTTAAATAC
1 TTATATATATATTTTAAATAC
93779850 CATATTGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.51
Consensus pattern (23 bp):
TTATATATATATTTTAAATACTA
Found at i:93779838 original size:39 final size:39
Alignment explanation
Indices: 93779766--93779842 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
93779756 TTTATATATA
* * *
93779766 TTATGTATATATTTTTTAATGCCATTAGTTATATATTTC
1 TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
*
93779805 TTATGTATATATTCTTAAATACTATTA-TATATATATTT
1 TTATGTATATATTCTTAAATACCATTAGT-TATATATTT
93779843 TAAATACCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.56
Consensus pattern (39 bp):
TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
Found at i:93781831 original size:12 final size:12
Alignment explanation
Indices: 93781811--93781846 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
93781801 ATTCATTTGA
*
93781811 CATTTATGCATT
1 CATTCATGCATT
93781823 CATTCATGCATT
1 CATTCATGCATT
*
93781835 CATTCATTCATT
1 CATTCATGCATT
93781847 GCATATCCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:93789295 original size:23 final size:23
Alignment explanation
Indices: 93789268--93789317 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
93789258 AATCAAGATG
* *
93789268 AAAACCCGAAACGGGCATATAAA
1 AAAACCCAAAAAGGGCATATAAA
93789291 AAAACCCAAAAAGGGCATATAAA
1 AAAACCCAAAAAGGGCATATAAA
93789314 AAAA
1 AAAA
93789318 AGAAAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.60, C:0.18, G:0.14, T:0.08
Consensus pattern (23 bp):
AAAACCCAAAAAGGGCATATAAA
Found at i:93790263 original size:76 final size:76
Alignment explanation
Indices: 93790169--93790309 Score: 228
Period size: 76 Copynumber: 1.9 Consensus size: 76
93790159 TGATGTTTTA
* * **
93790169 TTTCAAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGCTGAGGTATTGTCAA
93790234 TTTTTCGTATG
66 TTTTTCGTATG
* *
93790245 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACGCGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGCTGAGGTATTGTCAA
93790310 AAAAAAACAA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 59 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (76 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGCTGAGGTATTGTCAA
TTTTTCGTATG
Found at i:93790339 original size:62 final size:62
Alignment explanation
Indices: 93790249--93790371 Score: 201
Period size: 62 Copynumber: 2.0 Consensus size: 62
93790239 CGTATGTTTC
* * *
93790249 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACGCGCTGAGGTATTTTCAAA
1 AAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAAA
**
93790311 AAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAA
93790372 TTTCTGTTGT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (62 bp):
AAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAAA
Found at i:93790439 original size:138 final size:138
Alignment explanation
Indices: 93790183--93790447 Score: 392
Period size: 138 Copynumber: 1.9 Consensus size: 138
93790173 AAAATTCAAT
* **
93790183 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTTTCGTATGTTT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTCTCGTATGTCA
* * * *
93790248 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACGCGCTGAGGTATTTTCAAAAA
66 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAAACACGCCGAGGTATTTTCAAAAA
93790313 AAAACAAC
131 AAAACAAC
93790321 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAATTTCT-GT-TGTC
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAATTTCTCGTATGTC
* **
93790383 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
65 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCA--AAACACGCCGAGGTATTTTCAA
93790448 TTTCCATTTT
Statistics
Matches: 114, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
136 40 0.35
137 2 0.02
138 69 0.61
139 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (138 bp):
TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTCTCGTATGTCA
AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAAACACGCCGAGGTATTTTCAAAAA
AAAACAAC
Found at i:93790748 original size:74 final size:75
Alignment explanation
Indices: 93790642--93790948 Score: 237
Period size: 74 Copynumber: 3.9 Consensus size: 75
93790632 TGCCTTTCAA
* * *
93790642 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTAAAT
93790706 TTCTGTTGTC
66 TTCTGTTGTC
* * *
93790716 AAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTAAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTAAA
* *
93790781 TTTCCGTTTTTC
65 TTTCTG-TTGTC
*** * *
93790793 AATTTCTGCCGTTCAAAAA--AA-TCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC
1 AA------------AAAAATCAACTC-A-T-ATTGCGAGAG--GCGAGTTGAGCCTCAGGCACAC
* *
93790854 GCCGAGGTAATTTTAATTTATGTTGTC
49 GCCGAGGTAATTTAAATTTCTGTTGTC
* * *
93790881 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTAAA
93790946 TTT
65 TTT
93790949 TCGTTTTTCA
Statistics
Matches: 180, Mismatches: 28, Indels: 48
0.70 0.11 0.19
Matches are distributed among these distances:
74 56 0.31
76 54 0.30
77 7 0.04
78 2 0.01
79 2 0.01
86 2 0.01
87 2 0.01
88 7 0.04
89 32 0.18
91 16 0.09
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (75 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTAAAT
TTCTGTTGTC
Found at i:93790912 original size:165 final size:166
Alignment explanation
Indices: 93790304--93791111 Score: 1296
Period size: 165 Copynumber: 4.8 Consensus size: 166
93790294 GCTGAGGTAT
*
93790304 TTTCAAAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
93790369 CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
66 CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
* *
93790434 CGAGGTATTTTCAATTTCCATTTTTCAATTTCTACC
131 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
* *
93790470 TTTCAAAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTT
1 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
93790535 CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
66 CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
93790600 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
131 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
93790636 TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
*
93790701 TCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACG
65 TCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
*
93790766 CCGAGGTATTTTAAATTTCCGTTTTTCAATTTCTGCC
130 CCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
* * *
93790803 GTTC-AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTT
1 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
* *
93790867 TAATTTATGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
66 CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
*
93790932 CGAGGTATTTTCAATTTTCGTTTTTCAATTTCTGCC
131 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
* * ** * * *
93790968 TTTC-AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCACGCGCTGAGCTATT
1 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGACACGCTGAGGTAAT
* * * * * * *
93791032 TTCAATTTCTGTCTTTCAAAAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCTTCAGATCAC
64 TTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCAC
* *
93791097 ACACGGAGGTATTTT
127 ACGCCGAGGTATTTT
93791112 TTTCAATTTA
Statistics
Matches: 603, Mismatches: 34, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
165 195 0.32
166 169 0.28
167 182 0.30
168 3 0.00
169 54 0.09
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (166 bp):
TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
Found at i:93790914 original size:332 final size:333
Alignment explanation
Indices: 93790304--93791111 Score: 1300
Period size: 332 Copynumber: 2.4 Consensus size: 333
93790294 GCTGAGGTAT
93790304 TTTCAAAAAAAAA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
93790368 TCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
66 TCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
* *
93790433 CCGAGGTATTTTCAATTTCCATTTTTCAATTTCTACCTTTCAAAAAAAAACAACTCATATTGCGA
131 CCGAGGTATTTTAAATTTCCATTTTTCAATTTCTACCGTTCAAAAAAAAACAACTCATATTGCGA
* *
93790498 GAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTC
196 GAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTATGTTGTCAAAAAAATCAACTC
93790563 GTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
261 GTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
93790628 TTTCTGCC
326 TTTCTGCC
93790636 TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
*
93790701 TCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACG
66 TCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
* * * *
93790766 CCGAGGTATTTTAAATTTCCGTTTTTCAATTTCTGCCGTTC-AAAAAAATCGACTCATATTGCGA
131 CCGAGGTATTTTAAATTTCCATTTTTCAATTTCTACCGTTCAAAAAAAAACAACTCATATTGCGA
* *
93790830 GAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTTAATTTATGTTGTCAAAAAAATCAACTC
196 GAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTATGTTGTCAAAAAAATCAACTC
*
93790895 GTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGTTTTTCAA
261 GTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
93790960 TTTCTGCC
326 TTTCTGCC
* * ** * * *
93790968 TTTC--AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCACGCGCTGAGCTAT
1 TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGACACGCTGAGGTAA
* * * * * * *
93791031 TTTCAATTTCTGTCTTTCAAAAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCTTCAGATCA
64 TTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCA
* *
93791096 CACACGGAGGTATTTT
127 CACGCCGAGGTATTTT
93791112 TTTCAATTTA
Statistics
Matches: 442, Mismatches: 29, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
330 37 0.08
331 2 0.00
332 195 0.44
333 155 0.35
334 53 0.12
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (333 bp):
TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
TCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
CCGAGGTATTTTAAATTTCCATTTTTCAATTTCTACCGTTCAAAAAAAAACAACTCATATTGCGA
GAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAATTTATGTTGTCAAAAAAATCAACTC
GTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
TTTCTGCC
Found at i:93791049 original size:91 final size:91
Alignment explanation
Indices: 93790879--93791050 Score: 231
Period size: 91 Copynumber: 1.9 Consensus size: 91
93790869 ATTTATGTTG
* * *
93790879 TCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGCTCACACGCCGAGCTATTTTC
*
93790944 AATTTTCGTTTTTCAATTTCTGCCTT
66 AATTTTCGTCTTTCAATTTCTGCCTT
* * * * *
93790970 TCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGACTCACGCGCTGAGCTATTTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-CTCACACGCCGAGCTATTTT
93791034 CAA-TTTCTGTCTTTCAA
65 CAATTTTC-GTCTTTCAA
93791051 AAAAAATTAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
90 5 0.07
91 65 0.93
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33
Consensus pattern (91 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGCTCACACGCCGAGCTATTTTC
AATTTTCGTCTTTCAATTTCTGCCTT
Found at i:93791077 original size:78 final size:77
Alignment explanation
Indices: 93790953--93791199 Score: 304
Period size: 78 Copynumber: 3.2 Consensus size: 77
93790943 CAATTTTCGT
* *
93790953 TTTTCAATTTCTGCCTTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCA
93791018 CGCGCTGAGCTA
66 CGCGCTGAGCTA
* *
93791030 TTTTCAATTTCTGTCTTTCAAAAAAAATTAACTCATATTGCAAGAGGTGAGTTGAG-CTTCAGA-
1 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT--GAC
* * * *
93791093 TCACACACGGAGGTA
63 TCACGCGCTGAGCTA
* * * *
93791108 TTTTTTTCAATTTATATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
1 ---TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAC
93791171 TCACGCGCTGAGCTA
63 TCACGCGCTGAGCTA
93791186 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
93791200 TTTTAATGTC
Statistics
Matches: 142, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
75 12 0.08
77 22 0.15
78 87 0.61
79 5 0.04
81 16 0.11
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCA
CGCGCTGAGCTA
Found at i:93791906 original size:19 final size:20
Alignment explanation
Indices: 93791851--93791908 Score: 91
Period size: 21 Copynumber: 2.9 Consensus size: 20
93791841 GCCCATTAAG
93791851 CCCCCCCAAAAAAAAACCTAA
1 CCCCCCC-AAAAAAAACCTAA
93791872 CCCCTCCCAAAAAAAACCTAA
1 CCCC-CCCAAAAAAAACCTAA
93791893 -CCCCCCAAAAAAAACC
1 CCCCCCCAAAAAAAACC
93791909 AAGAAACCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 13 0.36
20 3 0.08
21 17 0.47
22 3 0.08
ACGTcount: A:0.50, C:0.45, G:0.00, T:0.05
Consensus pattern (20 bp):
CCCCCCCAAAAAAAACCTAA
Found at i:93792208 original size:13 final size:13
Alignment explanation
Indices: 93792190--93792233 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
93792180 TTCTTTCGAA
93792190 TCTTTTTTTTCTT
1 TCTTTTTTTTCTT
*
93792203 TCTTTTTTTGT-GT
1 TCTTTTTTT-TCTT
*
93792216 TGTTTTTTTTCTT
1 TCTTTTTTTTCTT
93792229 TCTTT
1 TCTTT
93792234 ATATATACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 1 0.04
13 23 0.92
14 1 0.04
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.82
Consensus pattern (13 bp):
TCTTTTTTTTCTT
Found at i:93792306 original size:17 final size:17
Alignment explanation
Indices: 93792281--93792326 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
93792271 CGGCCACAGT
*
93792281 GGGCAGTGGCCGGCGAC
1 GGGCGGTGGCCGGCGAC
93792298 GGGCGGTGGCCGGCGAC
1 GGGCGGTGGCCGGCGAC
*
93792315 GGGCGATGGCCG
1 GGGCGGTGGCCG
93792327 ACGATCGACC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.09, C:0.28, G:0.57, T:0.07
Consensus pattern (17 bp):
GGGCGGTGGCCGGCGAC
Found at i:93792496 original size:39 final size:39
Alignment explanation
Indices: 93792424--93792498 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
93792414 TTTATATATA
* * *
93792424 TTATGTATATATTTTTTAATGCCATTAGTTATATATTTC
1 TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
*
93792463 TTATGTATATATTCTTAAATACTATTA-TATATATAT
1 TTATGTATATATTCTTAAATACCATTAGT-TATATAT
93792499 ATATATTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.03
39 30 0.97
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (39 bp):
TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
Found at i:93792852 original size:12 final size:12
Alignment explanation
Indices: 93792835--93792859 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93792825 ATTTTGTAAA
93792835 TATCATTATTAT
1 TATCATTATTAT
93792847 TATCATTATTAT
1 TATCATTATTAT
93792859 T
1 T
93792860 GTTATTCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TATCATTATTAT
Found at i:93797920 original size:180 final size:180
Alignment explanation
Indices: 93797613--93797976 Score: 604
Period size: 180 Copynumber: 2.0 Consensus size: 180
93797603 TGGAACTTAG
* *
93797613 ATTTTGGTAATAGAGTGGCTTGTACATAGATTTAGAACCATATGAATTTTTGTTGTAAAGTAGCT
1 ATTTAGGTAATAGAATGGCTTGTACATAGATTTAGAACCATATGAATTTTTGTTGTAAAGTAGCT
* *
93797678 AAGTGGTTCCAAAACTATGTCATGCATGTTTAATATCATTTTGTACATTGAGATAATCTTTCTTA
66 AAGTGGTTCCAAAACTATATCATGCATATTTAATATCATTTTGTACATTGAGATAATCTTTCTTA
* *
93797743 GATGGATATGCTCATGCATTATATG-AGTTTTTTGAATGGTAATCTAACAT
131 GATGGATATACTCATGCATTATATGAAG-TTTTTGAATGATAATCTAACAT
* *
93797793 ATTTAGGTAATAGAATGGCTTGTACATAGATTTAGAATCATATGGATTTTTGTTGTAAAGTAGCT
1 ATTTAGGTAATAGAATGGCTTGTACATAGATTTAGAACCATATGAATTTTTGTTGTAAAGTAGCT
* * *
93797858 AAGTGGTTCCGAAACTATATCATGCATATTTAATATCATTTTGTACGTTGAGATGATCTTTCTTA
66 AAGTGGTTCCAAAACTATATCATGCATATTTAATATCATTTTGTACATTGAGATAATCTTTCTTA
*
93797923 GATGGATATACTCGTGCATTATATGAAGTTTTTGAATGATAATCTAACAT
131 GATGGATATACTCATGCATTATATGAAGTTTTTGAATGATAATCTAACAT
93797973 ATTT
1 ATTT
93797977 TGAGTCCTAA
Statistics
Matches: 171, Mismatches: 12, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
180 169 0.99
181 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (180 bp):
ATTTAGGTAATAGAATGGCTTGTACATAGATTTAGAACCATATGAATTTTTGTTGTAAAGTAGCT
AAGTGGTTCCAAAACTATATCATGCATATTTAATATCATTTTGTACATTGAGATAATCTTTCTTA
GATGGATATACTCATGCATTATATGAAGTTTTTGAATGATAATCTAACAT
Found at i:93806295 original size:15 final size:15
Alignment explanation
Indices: 93806275--93806305 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
93806265 TTAGAATTTG
93806275 ATTGATGGGTGACCT
1 ATTGATGGGTGACCT
93806290 ATTGATGGGTGACCT
1 ATTGATGGGTGACCT
93806305 A
1 A
93806306 GCTTTGGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.32, T:0.32
Consensus pattern (15 bp):
ATTGATGGGTGACCT
Found at i:93809255 original size:14 final size:13
Alignment explanation
Indices: 93809232--93809270 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
93809222 GACCTGCCCG
93809232 TATTAATTTTTTTA
1 TATT-ATTTTTTTA
93809246 TATTA-TTTTTTA
1 TATTATTTTTTTA
*
93809258 TATAATTTTTTTA
1 TATTATTTTTTTA
93809271 AAAAATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 11 0.48
13 8 0.35
14 4 0.17
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTATTTTTTTA
Found at i:93813147 original size:29 final size:31
Alignment explanation
Indices: 93813103--93813160 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
93813093 TTATATTAAA
93813103 TAAAAAATTAAAATAA-TTATCAAACACATT
1 TAAAAAATTAAAATAATTTATCAAACACATT
* *
93813133 TAAAATATT-AAATAATTTATTAAACACA
1 TAAAAAATTAAAATAATTTATCAAACACA
93813161 CCCTAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.33
Consensus pattern (31 bp):
TAAAAAATTAAAATAATTTATCAAACACATT
Found at i:93814256 original size:18 final size:19
Alignment explanation
Indices: 93814222--93814260 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
93814212 AATTTTACTT
*
93814222 TACATAATAAATTATATAA
1 TACATAATAAATAATATAA
93814241 TACATAA-AAATAATATAA
1 TACATAATAAATAATATAA
93814259 TA
1 TA
93814261 TAATCTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
TACATAATAAATAATATAA
Found at i:93818068 original size:6 final size:6
Alignment explanation
Indices: 93818057--93818086 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
93818047 AATCGAACAC
93818057 TTCCAT TTCCAT TTCCAT TTCCAT TTCCAT
1 TTCCAT TTCCAT TTCCAT TTCCAT TTCCAT
93818087 CTCTAGTCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.33, G:0.00, T:0.50
Consensus pattern (6 bp):
TTCCAT
Found at i:93818949 original size:20 final size:20
Alignment explanation
Indices: 93818924--93818962 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
93818914 ACCAAACAAA
*
93818924 AAAGAAAAAGGGTAAAAATT
1 AAAGAAAAAGGCTAAAAATT
93818944 AAAGAAAAAGGCTAAAAAT
1 AAAGAAAAAGGCTAAAAAT
93818963 GAATTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.67, C:0.03, G:0.18, T:0.13
Consensus pattern (20 bp):
AAAGAAAAAGGCTAAAAATT
Found at i:93824639 original size:42 final size:41
Alignment explanation
Indices: 93824593--93824697 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 41
93824583 GGAAAGATAC
*
93824593 TGGCACAAATAGTGCATCATCGG-GCAAGCTAAAACAATTATA-
1 TGGCACAAA-AGTGCATCATCGGAG-AA-CCAAAACAATTATAT
* *
93824635 TGGCACACAAGGTGCATCATCGGATGAACCAAAGCAATTATAT
1 TGGCACA-AAAGTGCATCATCGGA-GAACCAAAACAATTATAT
*
93824678 TGGCACATAAGTGCATCATC
1 TGGCACAAAAGTGCATCATC
93824698 AGATATACTG
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
42 42 0.78
43 11 0.20
44 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (41 bp):
TGGCACAAAAGTGCATCATCGGAGAACCAAAACAATTATAT
Found at i:93824719 original size:42 final size:42
Alignment explanation
Indices: 93824673--93825407 Score: 658
Period size: 42 Copynumber: 17.6 Consensus size: 42
93824663 CCAAAGCAAT
* * * *
93824673 TATATTGGCACATAAGTGCATCATCAGATATACTGAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* * **
93824715 TATATTGGCACGTAAGTGTATCATTGGACATACCGAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* * * *
93824757 TATACTGACACATAAGTGCATCATCGGACATA-TGAAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCG-AAGTAAA
* * *
93824799 TATAATGGCACGTAAGTGCATCATCGGACATACTGAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* ** *
93824841 TATACTGGCACGTAAATGCATCATTGGACATACCTAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* *
93824883 TATACTGGCAAGTAAGTGCATAATCAGACATACCGAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* * * * * *
93824925 TATACTGACATGTAAGTACATCATCGGATATATCGAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* * ** * * *
93824967 TATACTAGCACGTAAGTACATCATTGGACGTACCAAAGTACA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* * * * *
93825009 TATACTAGCACGCAAGTGCATCATC-GAATATATCGAAGAAAA
1 TATACTGGCACGTAAGTGCATCATCAG-ACATACCGAAGTAAA
* * * * * *
93825051 TATACTAGTAAGTAAGTGCATAATCAGATATACCAAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* * * * *
93825093 TATACT-ACATGTAAGTGCATCATCGGATATACTGAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* * *
93825134 TATACTGGCATGTAAGTGCGTCATTAGACATACCG-A--AAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* * ** * *
93825173 TATACTAGTATATAAATGCATTATC-GA-ATATTCCGAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATA--CCGAAGTAAA
* ** * * *
93825215 TATACTAGCAAATAAGTGCATAATTAGACATACCAAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* ** * *
93825257 TATACTAGCAAATAAGTGCATAATTAGACATACCGAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* * * * *
93825299 TATACTGACACGTAAGTGCATCATTAGATACACCAAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* * *
93825341 TATACTGGCACGTAAGAGCATCATCAGATATACCAAAGTAAA
1 TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
* *
93825383 TATACTAGCGCGTAAGTGCATCATC
1 TATACTGGCACGTAAGTGCATCATC
93825408 GAATATACTA
Statistics
Matches: 581, Mismatches: 100, Indels: 24
0.82 0.14 0.03
Matches are distributed among these distances:
37 3 0.01
38 2 0.00
39 24 0.04
40 1 0.00
41 37 0.06
42 506 0.87
43 5 0.01
44 3 0.01
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (42 bp):
TATACTGGCACGTAAGTGCATCATCAGACATACCGAAGTAAA
Found at i:93826656 original size:70 final size:70
Alignment explanation
Indices: 93826568--93826712 Score: 265
Period size: 70 Copynumber: 2.1 Consensus size: 70
93826558 AACTTAATGG
93826568 GTAAACATTTATTCAAACGACATAGTTTTACCTTTTAACTTAATTATTTTGAATTTTAACTTTTA
1 GTAAACATTTATTCAAACGACATAGTTTTACCTTTTAACTTAATTATTTTGAATTTTAACTTTTA
93826633 AAAAA
66 AAAAA
*
93826638 GTAAACATTTA-TCAAAACGACGTAGTTTTACCTTTTAACTTAATTATTTTGAATTTTAACTTTT
1 GTAAACATTTATTC-AAACGACATAGTTTTACCTTTTAACTTAATTATTTTGAATTTTAACTTTT
93826702 AAAAAA
65 AAAAAA
93826708 GTAAA
1 GTAAA
93826713 TGTAGCGACG
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
69 2 0.03
70 71 0.97
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (70 bp):
GTAAACATTTATTCAAACGACATAGTTTTACCTTTTAACTTAATTATTTTGAATTTTAACTTTTA
AAAAA
Found at i:93827922 original size:22 final size:23
Alignment explanation
Indices: 93827871--93827933 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 23
93827861 ATATAAGTAC
* *
93827871 AATAGTATAAAAGATATATAACT
1 AATAATATTAAAGATATATAACT
*
93827894 AACAATATTAAAG-TATAT-ACGT
1 AATAATATTAAAGATATATAAC-T
*
93827916 AATAATATATAAAAATAT
1 AATAATAT-TAAAGATAT
93827934 GATATTGAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.06
22 13 0.41
23 14 0.44
24 3 0.09
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (23 bp):
AATAATATTAAAGATATATAACT
Found at i:93830109 original size:14 final size:14
Alignment explanation
Indices: 93830087--93830123 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
93830077 GCAAAATATA
93830087 AAAACAGAATTTGG
1 AAAACAGAATTTGG
*
93830101 AAAATAGAATTTGG
1 AAAACAGAATTTGG
93830115 AAAACAGAA
1 AAAACAGAA
93830124 ACGAAGACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.57, C:0.05, G:0.19, T:0.19
Consensus pattern (14 bp):
AAAACAGAATTTGG
Found at i:93830247 original size:76 final size:75
Alignment explanation
Indices: 93830140--93830339 Score: 244
Period size: 76 Copynumber: 2.6 Consensus size: 75
93830130 ACTGCCTGAA
* * *
93830140 CATGTCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGCA-AACAGAAGTTGAA
1 CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAACAGAAATT-AA
93830204 AA-TACCTCAG
65 AATTACCTCAG
* *
93830214 CATG-CGAGCCGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTGTTTTTTTGAAGAATAGA
1 CATGTC---CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTTGAAGAACAGA
*
93830278 AATTAAAATTATCTCAG
59 AATTAAAATTACCTCAG
*
93830295 CATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
93830340 GACAAACAGA
Statistics
Matches: 108, Mismatches: 8, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
73 1 0.01
74 4 0.04
75 4 0.04
76 33 0.31
79 33 0.31
80 13 0.12
81 19 0.18
82 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.32
Consensus pattern (75 bp):
CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAACAGAAATTAAA
ATTACCTCAG
Found at i:93830327 original size:79 final size:77
Alignment explanation
Indices: 93830140--93830339 Score: 248
Period size: 79 Copynumber: 2.6 Consensus size: 77
93830130 ACTGCCTGAA
* * *
93830140 CATGTCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGCAAACAGAAGTTG
1 CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAACAGAAATTG
93830202 AAAATACCTCAG
66 AAAATACCTCAG
* *
93830214 CATG-CGAGCCGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTGTTTTTTTGAAGAATAGA
1 CATGTC---CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTTTTTTGAA-AACAGA
*
93830278 AATT-AAAATTATCTCAG
61 AATTGAAAA-TACCTCAG
*
93830295 CATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
93830340 GACAAACAGA
Statistics
Matches: 108, Mismatches: 8, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
73 1 0.01
74 4 0.04
76 33 0.31
78 1 0.01
79 36 0.33
80 13 0.12
81 19 0.18
82 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.32
Consensus pattern (77 bp):
CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAACAGAAATTG
AAAATACCTCAG
Found at i:93830453 original size:14 final size:14
Alignment explanation
Indices: 93830430--93830459 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93830420 TTGATTTTTG
*
93830430 AAACATAAATTGAA
1 AAACAGAAATTGAA
93830444 AAACAGAAATTGAA
1 AAACAGAAATTGAA
93830458 AA
1 AA
93830460 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.17
Consensus pattern (14 bp):
AAACAGAAATTGAA
Found at i:93830465 original size:87 final size:87
Alignment explanation
Indices: 93830194--93830707 Score: 672
Period size: 87 Copynumber: 6.0 Consensus size: 87
93830184 TTTTGCAAAC
* * * *
93830194 AGAAGTTGAAAATACCTCAGCATGCGAGCC-GATGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGAAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
** *
93830258 TTGTT------T-TTTTGAAGAAT
65 TT-TTGAAACATAAATTGAAAAAT
* * * *
93830275 AGAAATTAAAATTATCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
1 AGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
93830337 TTTGACAAACAGAAATTGAAAAAC
66 TTTG--AAACATAAATTGAAAAAT
* * * * * *
93830361 AGAAACTAAAAATACCTCAGCGTGTGACCTGAGGTTCAATTCACCTCTCGTAATATGAATTGATT
1 AGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
93830426 TTTGAAACATAAATTGAAAAAC
66 TTTGAAACATAAATTGAAAAAT
* *
93830448 AGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTTTCACAATATGAGTTGATT
1 AGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
93830513 TTTGAAGCATAAATTGAAAAAT
66 TTTGAAACATAAATTGAAAAAT
* *
93830535 AGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATT
1 AGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
93830600 TTTGAAACATAAATTGAAAAAT
66 TTTGAAACATAAATTGAAAAAT
*
93830622 AGAAATTTGAAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGAAA-TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
93830687 TTTTGAAACATAAATTGAAAA
65 TTTTGAAACATAAATTGAAAA
93830708 TACCTCAGCG
Statistics
Matches: 381, Mismatches: 38, Indels: 21
0.87 0.09 0.05
Matches are distributed among these distances:
77 2 0.01
78 4 0.01
79 32 0.08
81 20 0.05
86 28 0.07
87 181 0.48
88 109 0.29
89 5 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (87 bp):
AGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTGAAACATAAATTGAAAAAT
Found at i:93830639 original size:175 final size:174
Alignment explanation
Indices: 93830190--93830707 Score: 684
Period size: 175 Copynumber: 3.0 Consensus size: 174
93830180 ATTTTTTTGC
* * * *
93830190 AAACAGAAGTTGAAAATACCTCAGCATGCGAGCC-GATGCTCAACTCACCTCTCGCAATATGAGT
1 AAACAGAAATTGAAAATACCTCAGCATGTGA-CCTGAGGCTTAACTCACCTCTCGCAATATGAGT
** * * *
93830254 TGATTTGTT------T-TTTTGAAGAATAGAAATT-AAAATTATCTCAGCATGT--CCTGAGGCT
65 TGATTT-TTGAAACATAAATTGAAAAATAGAAATTGAAAA-TACCTCAGCGTGTGACCTGAGGCT
*
93830309 CAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAATTGAA
128 CAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAACATAAATTGAA
* * * * * *
93830357 AAACAGAAACTAAAAATACCTCAGCGTGTGACCTGAGG-TTCAATTCACCTCTCGTAATATGAAT
1 AAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTT-AACTCACCTCTCGCAATATGAGT
*
93830421 TGATTTTTGAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCA
65 TGATTTTTGAAACATAAATTGAAAAATAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCA
* * *
93830486 ACTCACCTTTCACAATATGAGTTGATTTTTGAAGCATAAATTGAA
130 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAA
*
93830531 AAATAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTT
*
93830596 GATTTTTGAAACATAAATTGAAAAATAGAAATTTGAAAATACCTCAGCGTGTGACCTGAAGCTCA
66 GATTTTTGAAACATAAATTGAAAAATAGAAA-TTGAAAATACCTCAGCGTGTGACCTGAGGCTCA
93830661 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAA
130 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAA
93830706 AA
1 AA
93830708 TACCTCAGCG
Statistics
Matches: 304, Mismatches: 32, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
166 5 0.02
167 55 0.18
172 1 0.00
173 25 0.08
174 101 0.33
175 112 0.37
176 5 0.02
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (174 bp):
AAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAACATAAATTGAAAAATAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAA
Found at i:93830740 original size:71 final size:72
Alignment explanation
Indices: 93830628--93830761 Score: 234
Period size: 71 Copynumber: 1.9 Consensus size: 72
93830618 AAATAGAAAT
93830628 TTGAAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
1 TTGAAAATACCTCAGCG-GTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
93830693 AACATAAA
65 AACATAAA
* *
93830701 TTGAAAATACCTCAGC-GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TTGAAAATACCTCAGCGGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
93830762 AAAAACAGAA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
71 43 0.73
73 16 0.27
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (72 bp):
TTGAAAATACCTCAGCGGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
ACATAAA
Found at i:93830779 original size:71 final size:72
Alignment explanation
Indices: 93830617--93830780 Score: 224
Period size: 71 Copynumber: 2.3 Consensus size: 72
93830607 CATAAATTGA
* *
93830617 AAAATAGAAATTTGAAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAA-TTAAAAATACCTCAGCG-GTGACCTGAAGCTCAACTCACCTCTCGCAATATGAG
93830682 TTGATTTTT
64 TTGATTTTT
* * * * *
93830691 GAAACATAAATTGAAAATACCTCAGC-GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTAAAAATACCTCAGCGGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTT
93830755 GATTTTT
66 GATTTTT
93830762 AAAAACAGAAA-TAAAAATA
1 -AAAACAGAAATTAAAAATA
93830781 TCAGAATACC
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
71 50 0.62
72 8 0.10
73 16 0.20
74 7 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (72 bp):
AAAACAGAAATTAAAAATACCTCAGCGGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTT
Found at i:93843123 original size:22 final size:23
Alignment explanation
Indices: 93843062--93843134 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
93843052 AGTATTAGAA
* *
93843062 ATATACGTACAATAGTATAAAAGAT
1 ATATACGT--AATAATATTAAAGAT
*
93843087 ATATAAC-TAACAATATTAAAG-T
1 ATAT-ACGTAATAATATTAAAGAT
*
93843109 ATATACGTAATAATATATAAAAAT
1 ATATACGTAATAATAT-TAAAGAT
93843133 AT
1 AT
93843135 GATATTGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
21 2 0.05
22 13 0.33
23 14 0.36
24 3 0.08
25 5 0.13
26 2 0.05
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.32
Consensus pattern (23 bp):
ATATACGTAATAATATTAAAGAT
Found at i:93856865 original size:15 final size:15
Alignment explanation
Indices: 93856845--93856873 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
93856835 TCCAACTATG
93856845 AAGGAAGTGGTAAAT
1 AAGGAAGTGGTAAAT
93856860 AAGGAAGTGGTAAA
1 AAGGAAGTGGTAAA
93856874 CCCTAAACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.34, T:0.17
Consensus pattern (15 bp):
AAGGAAGTGGTAAAT
Found at i:93856882 original size:7 final size:7
Alignment explanation
Indices: 93856870--93856894 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
93856860 AAGGAAGTGG
93856870 TAAACCC
1 TAAACCC
93856877 TAAACCC
1 TAAACCC
93856884 TAAACCC
1 TAAACCC
93856891 TAAA
1 TAAA
93856895 TTTTTTATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCC
Found at i:93858232 original size:67 final size:66
Alignment explanation
Indices: 93858038--93858514 Score: 246
Period size: 67 Copynumber: 7.3 Consensus size: 66
93858028 TTTTGTTTGA
* * * * * * ** * * *
93858038 GTTAGCTGATTTAAGATTACATCTTCGAACAACTCATTGATTTAATATTGTAGTTGATATTATGA
1 GTTAGCTGATTTAAGATTGCAACTCCGAA-GACTCGTTGATTTAAGATCATAGCTAATATTATTA
93858103 AG
65 AG
* ** * * * * *
93858105 GTTAGCTTATTTAAGATCACAA--CCTAAG-TTCTTTTGATTTAAGATCATGAAC-AATTTTATT
1 GTTAGCTGATTTAAGATTGCAACTCCGAAGACTC-GTTGATTTAAGATCAT-AGCTAATATTATT
*
93858166 -TG
64 AAG
* * * * *
93858168 AGTTAGCTGATTTAATATTGCAACTCCGAAGAACTCGCTAATTTAATATCATAGCTGATATTATT
1 -GTTAGCTGATTTAAGATTGCAACTCCGAAG-ACTCGTTGATTTAAGATCATAGCTAATATTATT
93858233 AAG
64 AAG
* * * * * * * * * *
93858236 GTTAGCTAATTTAACATCGTAA--CCTAAG-TTCATTTGATTTAGGATCATGAAC-AATTTTATT
1 GTTAGCTGATTTAAGATTGCAACTCCGAAGACTC-GTTGATTTAAGATCAT-AGCTAATATTATT
*
93858297 -TG
64 AAG
* * * * **
93858299 AGTTAGCTGATTTAATATCGCAACTCTGAACATCTCGTTGATTTAAGATCACGGCTAATATTATT
1 -GTTAGCTGATTTAAGATTGCAACTCCGAAGA-CTCGTTGATTTAAGATCATAGCTAATATTATT
93858364 AAG
64 AAG
* * * * *
93858367 GTTAGCTGATTTAAGATTGCAA--CCTAAG-TTCATTTGATTTAAGATCAT-GAATAATTTTATT
1 GTTAGCTGATTTAAGATTGCAACTCCGAAGACTC-GTTGATTTAAGATCATAG-CTAATATTATT
*
93858428 -TG
64 AAG
* ** * *
93858430 AGTTAGCTGATTTAAGATTGCAACTCCGAACAACTCACTGATTTAATATCACAGCTAATATTATT
1 -GTTAGCTGATTTAAGATTGCAACTCCGAA-GACTCGTTGATTTAAGATCATAGCTAATATTATT
93858495 AAG
64 AAG
*
93858498 GTTAGATGATTTAAGAT
1 GTTAGCTGATTTAAGAT
93858515 CGTAACCTAT
Statistics
Matches: 301, Mismatches: 82, Indels: 54
0.69 0.19 0.12
Matches are distributed among these distances:
63 10 0.03
64 118 0.39
65 14 0.05
66 15 0.05
67 134 0.45
68 10 0.03
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (66 bp):
GTTAGCTGATTTAAGATTGCAACTCCGAAGACTCGTTGATTTAAGATCATAGCTAATATTATTAA
G
Found at i:93858260 original size:131 final size:131
Alignment explanation
Indices: 93858025--93858946 Score: 1108
Period size: 131 Copynumber: 7.0 Consensus size: 131
93858015 CTATTATGGT
* * * * * ** ***
93858025 CAATTTTGTTTGAGTTAGCTGATTTAAGATTACATCTTCGAACAACTCATTGATTTAATATTGTA
1 CAATTTTATTTGAGTTAGCTGATTTAATATTGCAACTCCGAACAACTCGCTGATTTAATATCACA
* * * * *
93858090 GTTGATATTATGAAGGTTAGCTTATTTAAGATCACAACCTAAGTTCTTTTGATTTAAGATCATGA
66 GCTGATATTATTAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATGA
93858155 A
131 A
* * *
93858156 CAATTTTATTTGAGTTAGCTGATTTAATATTGCAACTCCGAAGAACTCGCTAATTTAATATCATA
1 CAATTTTATTTGAGTTAGCTGATTTAATATTGCAACTCCGAACAACTCGCTGATTTAATATCACA
* * * *
93858221 GCTGATATTATTAAGGTTAGCTAATTTAACATCGTAACCTAAGTTCATTTGATTTAGGATCATGA
66 GCTGATATTATTAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATGA
93858286 A
131 A
* * * * * *
93858287 CAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCTGAACATCTCGTTGATTTAAGATCACG
1 CAATTTTATTTGAGTTAGCTGATTTAATATTGCAACTCCGAACAACTCGCTGATTTAATATCACA
* *
93858352 GCTAATATTATTAAGGTTAGCTGATTTAAGATTGCAACCTAAGTTCATTTGATTTAAGATCATGA
66 GCTGATATTATTAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATGA
93858417 A
131 A
* * *
93858418 TAATTTTATTTGAGTTAGCTGATTTAAGATTGCAACTCCGAACAACTCACTGATTTAATATCACA
1 CAATTTTATTTGAGTTAGCTGATTTAATATTGCAACTCCGAACAACTCGCTGATTTAATATCACA
* * * * * *
93858483 GCTAATATTATTAAGGTTAGATGATTTAAGATCGTAACCTATGTTCATTTGATTTAAGATAATTA
66 GCTGATATTATTAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATGA
93858548 A
131 A
* * * * * * * *
93858549 CAATTTTCTTTGAGTTAGCTGATTTAATATCGCAACTTCGAGCAGCTTGCTGATTTAAGATCGCA
1 CAATTTTATTTGAGTTAGCTGATTTAATATTGCAACTCCGAACAACTCGCTGATTTAATATCACA
* ** *
93858614 GCTGATATTATTAAAGTTAGCTTCTTTAATATCGCAACCTAAGTTCATTTGATTTAAGATCATGA
66 GCTGATATTATTAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATGA
93858679 A
131 A
* * * * * *** *
93858680 AAATTTTATTTGAGTTAGTTGATTTAAGATTGCATCTTCGAATTGCTCGTTGATTTAATATCACA
1 CAATTTTATTTGAGTTAGCTGATTTAATATTGCAACTCCGAACAACTCGCTGATTTAATATCACA
* * * * *
93858745 ACTGATATTATTAAGGTTACCTGATTTAAGATCACAACCTAAATTCATTCGATTTAAGATCATGA
66 GCTGATATTATTAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATGA
93858810 A
131 A
* * ** ** * *
93858811 CAGTTTTATTTGAGTTAGCTAATTTAATATCACAACTCCGAGTAGCTCGCTGATTTAATATCGCA
1 CAATTTTATTTGAGTTAGCTGATTTAATATTGCAACTCCGAACAACTCGCTGATTTAATATCACA
** * * * * *
93858876 ATTGATATTATTAAGGTTCA-CTGATTCAAGATCACAACCTATGTTCACTTGATCTAAGATCATG
66 GCTGATATTATTAAGGTT-AGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATG
93858940 AA
130 AA
93858942 CAATT
1 CAATT
93858947 CCACTTGTAT
Statistics
Matches: 677, Mismatches: 113, Indels: 2
0.85 0.14 0.00
Matches are distributed among these distances:
131 676 1.00
132 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39
Consensus pattern (131 bp):
CAATTTTATTTGAGTTAGCTGATTTAATATTGCAACTCCGAACAACTCGCTGATTTAATATCACA
GCTGATATTATTAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATGA
A
Found at i:93858758 original size:393 final size:393
Alignment explanation
Indices: 93858025--93858946 Score: 1222
Period size: 393 Copynumber: 2.3 Consensus size: 393
93858015 CTATTATGGT
* * * * * *
93858025 CAATTTTGTTTGAGTTAGCTGATTTAAGATTACATCTTCGAACAACTCATTGATTTAATATTGTA
1 CAATTTTATTTGAGTTAGCTGATTTAAGATTACAACTCCGAACAACTCACTGATTTAATATCGCA
* * * *
93858090 GTTGATATTATGAAGGTTAGCTTATTTAAGATCACAACCTAAGTTCTTTTGATTTAAGATCATGA
66 GTTGATATTATTAAGGTTAGCTGATTTAAGATCACAACCTATGTTCATTTGATTTAAGATCATGA
* * *
93858155 ACAATTTTATTTGAGTTAGCTGATTTAATATTGCAACTCCGAAGAACTCGCTAATTTAATATCAT
131 ACAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCGAAGAACTCGCTAATTTAAGATCAC
* * *
93858220 AGCTGATATTATTAAGGTTAGCTAATTTAACATCGTAACCTAAGTTCATTTGATTTAGGATCATG
196 AGCTGATATTATTAAAGTTAGCTAATTTAACATCGCAACCTAAGTTCATTTGATTTAAGATCATG
* *
93858285 AACAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCTGAACATCTCGTTGATTTAAGATCA
261 AAAAATTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCTGAACATCTCGTTGATTTAAGATCA
** * ** * *
93858350 CGGCTAATATTATTAAGGTTAGCTGATTTAAGATTGCAACCTAAGTTCATTTGATTTAAGATCAT
326 CAACTAATATTATTAAGGTTACCTGATTTAAGATCACAACCTAAATTCATTCGATTTAAGATCAT
93858415 GAA
391 GAA
* * *
93858418 TAATTTTATTTGAGTTAGCTGATTTAAGATTGCAACTCCGAACAACTCACTGATTTAATATCACA
1 CAATTTTATTTGAGTTAGCTGATTTAAGATTACAACTCCGAACAACTCACTGATTTAATATCGCA
* * * ** * *
93858483 GCTAATATTATTAAGGTTAGATGATTTAAGATCGTAACCTATGTTCATTTGATTTAAGATAATTA
66 GTTGATATTATTAAGGTTAGCTGATTTAAGATCACAACCTATGTTCATTTGATTTAAGATCATGA
* * * * * *
93858548 ACAATTTTCTTTGAGTTAGCTGATTTAATATCGCAACTTCG-AGCAGCTTGCTGATTTAAGATCG
131 ACAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCGAAG-AACTCGCTAATTTAAGATCA
** *
93858612 CAGCTGATATTATTAAAGTTAGCTTCTTTAATATCGCAACCTAAGTTCATTTGATTTAAGATCAT
195 CAGCTGATATTATTAAAGTTAGCTAATTTAACATCGCAACCTAAGTTCATTTGATTTAAGATCAT
* * * * *
93858677 GAAAAATTTTATTTGAGTTAGTTGATTTAAGATTGCATCT-TCGAA-TTGCTCGTTGATTTAATA
260 GAAAAATTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCT-GAACAT-CTCGTTGATTTAAGA
*
93858740 TCACAACTGATATTATTAAGGTTACCTGATTTAAGATCACAACCTAAATTCATTCGATTTAAGAT
323 TCACAACTAATATTATTAAGGTTACCTGATTTAAGATCACAACCTAAATTCATTCGATTTAAGAT
93858805 CATGAA
388 CATGAA
* * * * ** * *
93858811 CAGTTTTATTTGAGTTAGCTAATTTAATATCACAACTCCGAGTAGCTCGCTGATTTAATATCGCA
1 CAATTTTATTTGAGTTAGCTGATTTAAGATTACAACTCCGAACAACTCACTGATTTAATATCGCA
* * * *
93858876 ATTGATATTATTAAGGTTCA-CTGATTCAAGATCACAACCTATGTTCACTTGATCTAAGATCATG
66 GTTGATATTATTAAGGTT-AGCTGATTTAAGATCACAACCTATGTTCATTTGATTTAAGATCATG
93858940 AACAATT
130 AACAATT
93858947 CCACTTGTAT
Statistics
Matches: 453, Mismatches: 72, Indels: 8
0.85 0.14 0.02
Matches are distributed among these distances:
392 4 0.01
393 448 0.99
394 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39
Consensus pattern (393 bp):
CAATTTTATTTGAGTTAGCTGATTTAAGATTACAACTCCGAACAACTCACTGATTTAATATCGCA
GTTGATATTATTAAGGTTAGCTGATTTAAGATCACAACCTATGTTCATTTGATTTAAGATCATGA
ACAATTTTATTTGAGTTAGCTGATTTAATATCGCAACTCCGAAGAACTCGCTAATTTAAGATCAC
AGCTGATATTATTAAAGTTAGCTAATTTAACATCGCAACCTAAGTTCATTTGATTTAAGATCATG
AAAAATTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCTGAACATCTCGTTGATTTAAGATCA
CAACTAATATTATTAAGGTTACCTGATTTAAGATCACAACCTAAATTCATTCGATTTAAGATCAT
GAA
Found at i:93870369 original size:23 final size:23
Alignment explanation
Indices: 93870342--93870385 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
93870332 ATGTTAAAGT
*
93870342 ATGAATGTATAT-ATATGTATGGA
1 ATGAATGT-TATGAGATGTATGGA
93870365 ATGAATGTTATGAGATGTATG
1 ATGAATGTTATGAGATGTATG
93870386 CTTTGTTAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.36, C:0.00, G:0.25, T:0.39
Consensus pattern (23 bp):
ATGAATGTTATGAGATGTATGGA
Found at i:93874164 original size:45 final size:45
Alignment explanation
Indices: 93874114--93874203 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
93874104 GATACAACTA
*
93874114 AAAGAATAAAGGACTTATTTGGGTGCCATTTAAAGGTTAAGGGCT
1 AAAGAATAAAGGACTTATTTGAGTGCCATTTAAAGGTTAAGGGCT
93874159 AAAGAATAAAGGACTTATTTGAGTGCCATTTAAAGGTTAAGGGCT
1 AAAGAATAAAGGACTTATTTGAGTGCCATTTAAAGGTTAAGGGCT
93874204 TATTCGAACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.37, C:0.09, G:0.26, T:0.29
Consensus pattern (45 bp):
AAAGAATAAAGGACTTATTTGAGTGCCATTTAAAGGTTAAGGGCT
Found at i:93879694 original size:20 final size:20
Alignment explanation
Indices: 93879669--93879706 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93879659 TCAAATATCA
93879669 TTTAATTATAAAAATATAAT
1 TTTAATTATAAAAATATAAT
* *
93879689 TTTAATTTTTAAAATATA
1 TTTAATTATAAAAATATA
93879707 GCATGAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTAATTATAAAAATATAAT
Found at i:93879763 original size:16 final size:17
Alignment explanation
Indices: 93879732--93879775 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
93879722 TTAAATAATA
*
93879732 AAATGAAATCTTTAAA-T
1 AAATAAAAT-TTTAAATT
93879749 AAATAAAATTTTAAATT
1 AAATAAAATTTTAAATT
*
93879766 AAAAAAAATT
1 AAATAAAATT
93879776 GTAACTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (17 bp):
AAATAAAATTTTAAATT
Found at i:93891709 original size:28 final size:28
Alignment explanation
Indices: 93891673--93891750 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 28
93891663 GAATCATTTG
* * *
93891673 ATATTTCGCACATTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTAA
*
93891701 ATATCTCGCACACTAAGTGCCATTCTAA
1 ATATTTCGCACACTAAGTGCCATTCTAA
*
93891729 ATATTTCGCACACTAAGGGCCA
1 ATATTTCGCACACTAAGTGCCA
93891751 AATTTGATGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTAA
Found at i:93895014 original size:120 final size:120
Alignment explanation
Indices: 93894881--93896018 Score: 2098
Period size: 120 Copynumber: 9.5 Consensus size: 120
93894871 CCTTATGTCA
* *
93894881 ATTAAGAAATTTTTTAAATTATATAGTTTAATGAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
*
93894946 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAATT
66 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
93895001 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
93895066 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
66 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
93895121 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
*
93895186 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAATT
66 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
93895241 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
93895306 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
66 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
93895361 ATTAAGAA-TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
*
93895425 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAATT
66 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
93895480 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
*
93895545 TATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATT
66 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
** *
93895600 ATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
*
93895665 TATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATT
66 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
* *
93895720 ATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
*
93895785 TATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATT
66 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
** *
93895840 ATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
*
93895905 TATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATT
66 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
* *
93895960 ATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTT
93896019 TAAATATGAT
Statistics
Matches: 1003, Mismatches: 14, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
119 118 0.12
120 885 0.88
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATT
Found at i:93895591 original size:599 final size:600
Alignment explanation
Indices: 93894881--93896018 Score: 2116
Period size: 599 Copynumber: 1.9 Consensus size: 600
93894871 CCTTATGTCA
93894881 ATTAAGAAATTTTTTAAATTATATAGTTTAATGAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAAATTTTTTAAATTATATAGTTTAATGAAAATATATTTAATAATAATTATGTTAATTTA
*
93894946 TATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAATTATTAAGAATT
66 TATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAACATTAATTATTAAGAATT
**
93895011 TTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
131 TCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
* *
93895076 TATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATT
196 TATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
93895141 ATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATAT
261 ATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATAT
* **
93895206 TATGATTTGAGTAAATTAATATAAGAACATTAATTATTAAGAATTTTTTTAAATTATATAGTTTA
326 TATGATTTCAGTAAATTAATATAAGAACATTAATTATTAAGAATTTCATTAAATTATATAGTTTA
*
93895271 ATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGA
391 ATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCA
93895336 GTAAATTAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAAATAT
456 GTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATAT
93895400 ATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAAT
521 ATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAAT
93895465 ATAAGAACATTAATT
586 ATAAGAACATTAATT
* *
93895480 ATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTA
1 ATTAAGAAATTTTTTAAATTATATAGTTTAATGAAAATATATTTAATAATAATTATGTTAATTTA
*
93895545 TATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATT
66 TATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAACATTAATTATTAAGAATT
*
93895610 TCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
131 TCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
93895675 TATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
196 TATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
*
93895740 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATAT
261 ATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATAT
* *
93895805 TATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTA
326 TATGATTTCAGTAAATTAATATAAGAACATTAATTATTAAGAATTTCATTAAATTATATAGTTTA
93895870 ATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCA
391 ATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCA
*
93895935 GTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAT
456 GTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATAT
93896000 ATTTAATAATAATTATGTT
521 ATTTAATAATAATTATGTT
93896019 TAAATATGAT
Statistics
Matches: 521, Mismatches: 17, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
599 476 0.91
600 45 0.09
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (600 bp):
ATTAAGAAATTTTTTAAATTATATAGTTTAATGAAAATATATTTAATAATAATTATGTTAATTTA
TATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAACATTAATTATTAAGAATT
TCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAG
TATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
ATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATAT
TATGATTTCAGTAAATTAATATAAGAACATTAATTATTAAGAATTTCATTAAATTATATAGTTTA
ATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCA
GTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATAT
ATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAAT
ATAAGAACATTAATT
Found at i:93895755 original size:18 final size:17
Alignment explanation
Indices: 93895727--93895761 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93895717 ATTATTAAGA
*
93895727 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
93895744 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
93895762 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:93895995 original size:18 final size:17
Alignment explanation
Indices: 93895967--93896001 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93895957 ATTATTAAGA
*
93895967 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
93895984 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
93896002 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:93896215 original size:44 final size:45
Alignment explanation
Indices: 93896166--93896256 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
93896156 ACCTCTATTC
* * *
93896166 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
93896210 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
93896255 CA
1 CA
93896257 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:93896258 original size:16 final size:16
Alignment explanation
Indices: 93896237--93896288 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
93896227 GATTAGCTAT
93896237 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
93896253 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
93896269 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
93896285 TACA
1 TACA
93896289 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.37, C:0.37, G:0.02, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:93901048 original size:21 final size:20
Alignment explanation
Indices: 93901017--93901058 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
93901007 CGTTTAAACA
93901017 TTCTGTTTCTTTCATTCTCTTT
1 TTCTGTTTCTTT-ATT-TCTTT
93901039 TTCT-TTTCTTTATTTCTTT
1 TTCTGTTTCTTTATTTCTTT
93901058 T
1 T
93901059 GTTTCATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 3 0.15
21 7 0.35
22 4 0.20
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (20 bp):
TTCTGTTTCTTTATTTCTTT
Found at i:93905089 original size:21 final size:21
Alignment explanation
Indices: 93905039--93905089 Score: 75
Period size: 22 Copynumber: 2.4 Consensus size: 21
93905029 GCATCAAAAT
*
93905039 AACCAACGAAGGACAATTGAG
1 AACCAACGAAGGACAACTGAG
*
93905060 AACCCAACGAAGGATAACTGAG
1 AA-CCAACGAAGGACAACTGAG
93905082 AACCAACG
1 AACCAACG
93905090 GTGAAGGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.47, C:0.24, G:0.22, T:0.08
Consensus pattern (21 bp):
AACCAACGAAGGACAACTGAG
Found at i:93907048 original size:40 final size:41
Alignment explanation
Indices: 93906954--93907174 Score: 237
Period size: 40 Copynumber: 5.6 Consensus size: 41
93906944 TATTCGAATG
* *
93906954 ATATCCGGGCT-AGGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
93906995 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
93907035 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
93907075 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
93907115 ATATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
93907154 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
93907175 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 15 0.10
40 94 0.61
41 26 0.17
42 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:93909583 original size:27 final size:27
Alignment explanation
Indices: 93909521--93909583 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
93909511 CTGTCGCGCG
* * * * *
93909521 AACAGGTGACTGGTAGATTGCTTGGCG
1 AACAAGTGACTGATAGATTGCCTAGCA
*
93909548 AACAGGTGACTGATAGATTGCCTAGCA
1 AACAAGTGACTGATAGATTGCCTAGCA
*
93909575 AATAAGTGA
1 AACAAGTGA
93909584 TTGGCGGGCT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (27 bp):
AACAAGTGACTGATAGATTGCCTAGCA
Found at i:93909708 original size:27 final size:26
Alignment explanation
Indices: 93909630--93909721 Score: 82
Period size: 27 Copynumber: 3.4 Consensus size: 26
93909620 TATCTTACAG
*
93909630 ACAGGTGACTGG-AAAGCTGTCTGGCA
1 ACAGGTGACTGGCAGA-CTGTCTGGCA
*
93909656 GACAGGTGACTGGC-GAAT-TGCTTGGCGA
1 -ACAGGTGACTGGCAGACTGT-C-TGGC-A
93909684 ACAGGTGACTGGCAGACTGTCTGGCAA
1 ACAGGTGACTGGCAGACTGTCTGGC-A
*
93909711 ACATGTGACTG
1 ACAGGTGACTG
93909722 ATGAGTTGCC
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
25 1 0.02
26 2 0.04
27 45 0.83
28 5 0.09
29 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.35, T:0.21
Consensus pattern (26 bp):
ACAGGTGACTGGCAGACTGTCTGGCA
Found at i:93909749 original size:54 final size:54
Alignment explanation
Indices: 93909646--93909755 Score: 130
Period size: 54 Copynumber: 2.0 Consensus size: 54
93909636 GACTGGAAAG
* * * * *
93909646 CTGTCTGGCAGACAGGTGACTGGCGAATTGCTTGGCGAACAGGTGACTGGCAGA
1 CTGTCTGGCAAACAGGTGACTGACGAATTGCCTGGCAAACAGGTAACTGGCAGA
* * * * *
93909700 CTGTCTGGCAAACATGTGACTGATGAGTTGCCTGGCAAATAGGTAACTGGTAGA
1 CTGTCTGGCAAACAGGTGACTGACGAATTGCCTGGCAAACAGGTAACTGGCAGA
93909754 CT
1 CT
93909756 ATCTCACGAA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.24
Consensus pattern (54 bp):
CTGTCTGGCAAACAGGTGACTGACGAATTGCCTGGCAAACAGGTAACTGGCAGA
Found at i:93914572 original size:21 final size:20
Alignment explanation
Indices: 93914539--93914577 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
93914529 AATATACGTT
93914539 TGTTTGTCAGAACATTTTGTC
1 TGTTTGTCAGAAC-TTTTGTC
**
93914560 TGTTTGTGTGAACTTTTG
1 TGTTTGTCAGAACTTTTG
93914578 GTTATTGGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.15, C:0.10, G:0.23, T:0.51
Consensus pattern (20 bp):
TGTTTGTCAGAACTTTTGTC
Found at i:93915583 original size:25 final size:25
Alignment explanation
Indices: 93915555--93915625 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 25
93915545 GAATAACAAC
93915555 CTAAATCAACTACCTCAATAACTTA
1 CTAAATCAACTACCTCAATAACTTA
* *
93915580 CT-AA-CAAC-A-AT-AACAAC---
1 CTAAATCAACTACCTCAATAACTTA
*
93915597 CTAAATCATCTACCTCAATAACTTA
1 CTAAATCAACTACCTCAATAACTTA
93915622 CTAA
1 CTAA
93915626 CAACCTAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 16
0.61 0.09 0.30
Matches are distributed among these distances:
17 2 0.06
18 2 0.06
19 3 0.09
20 6 0.18
21 2 0.06
22 6 0.18
23 4 0.12
24 2 0.06
25 6 0.18
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.25
Consensus pattern (25 bp):
CTAAATCAACTACCTCAATAACTTA
Found at i:93915593 original size:42 final size:42
Alignment explanation
Indices: 93915546--93915629 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
93915536 ACAAGAAAAG
93915546 AATAACAACCTAAATCAACTACCTCAATAACTTACTAACAAC
1 AATAACAACCTAAATCAACTACCTCAATAACTTACTAACAAC
*
93915588 AATAACAACCTAAATCATCTACCTCAATAACTTACTAACAAC
1 AATAACAACCTAAATCAACTACCTCAATAACTTACTAACAAC
93915630 CTAACTGTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.23
Consensus pattern (42 bp):
AATAACAACCTAAATCAACTACCTCAATAACTTACTAACAAC
Found at i:93916704 original size:16 final size:16
Alignment explanation
Indices: 93916680--93916717 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
93916670 TTTGGTTCGC
* *
93916680 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
93916696 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
93916712 TGTAAT
1 TGTAAT
93916718 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:93916747 original size:45 final size:44
Alignment explanation
Indices: 93916696--93916790 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
93916686 GGATTAGAGG
* *
93916696 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
93916741 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
93916785 TGTAAT
1 TGTAAT
93916791 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:93916973 original size:18 final size:17
Alignment explanation
Indices: 93916952--93916986 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93916942 TTATTATTTA
*
93916952 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
93916970 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
93916987 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:93917120 original size:18 final size:17
Alignment explanation
Indices: 93917099--93917133 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93917089 TTATTATTAA
*
93917099 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
93917117 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
93917134 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:93917145 original size:147 final size:149
Alignment explanation
Indices: 93916871--93917145 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
93916861 ATGATTATTG
* *
93916871 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAGTCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
93916936 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
93917001 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
*
93917020 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
93917083 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
93917146 ATATTCTTAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 94 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:93917177 original size:54 final size:54
Alignment explanation
Indices: 93917119--93917297 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
93917109 ATTAAAATAT
*
93917119 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
93917173 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
93917236 TAT
53 -AC
*
93917239 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
93917293 ATAAT
1 ATAAT
93917298 ATATGATACT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:93917240 original size:18 final size:17
Alignment explanation
Indices: 93917219--93917253 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93917209 TTATTATTAA
93917219 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
93917237 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
93917254 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:93917368 original size:18 final size:17
Alignment explanation
Indices: 93917329--93917360 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
93917319 TTTTAAATAA
93917329 TTAATATTAAATATATT
1 TTAATATTAAATATATT
93917346 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
93917361 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:93917385 original size:120 final size:120
Alignment explanation
Indices: 93917082--93917374 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
93917072 ATCATATTTA
93917082 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
93917147 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
* *
93917202 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
93917267 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA--AT
* * *
93917323 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
93917375 TAAAATAATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
Found at i:93917485 original size:91 final size:91
Alignment explanation
Indices: 93917390--93917597 Score: 258
Period size: 91 Copynumber: 2.3 Consensus size: 91
93917380 TAATTATAAC
* * * *
93917390 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATAATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT-ATTAAATATAATTTAATAA
*
93917454 TAATATAAAATTTCATAAAATTCTTGA
65 TAATATAAAATTTCATAAAATTCTTAA
* * *
93917481 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* * * *
93917546 GATATATAATTTCATGAAATTGTTAA
66 AATATAAAATTTCATAAAATTCTTAA
*
93917572 TAATAAAATGT-TCTTATATGAATTTA
1 TAAT-AAAT-TATATTATATGAATTTA
93917598 CTAAAATCAA
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
91 78 0.76
92 23 0.23
93 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATAAAATTTCATAAAATTCTTAA
Found at i:93918407 original size:14 final size:14
Alignment explanation
Indices: 93918388--93918418 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
93918378 AAAATATTAA
93918388 CAACAAATAGTTCC
1 CAACAAATAGTTCC
93918402 CAACAAATAGTTCC
1 CAACAAATAGTTCC
93918416 CAA
1 CAA
93918419 TTGCCAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.29, G:0.06, T:0.19
Consensus pattern (14 bp):
CAACAAATAGTTCC
Found at i:93924027 original size:19 final size:19
Alignment explanation
Indices: 93924003--93924070 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 19
93923993 ATTTGAACTT
93924003 TGTTTAAATTAATATTAAA
1 TGTTTAAATTAATATTAAA
* * *
93924022 TGTTT-ATTTAAGATTTGAACTT
1 TGTTTAAATTAATA-TT-AA--A
93924044 TGTTTAAATTAATATTAAA
1 TGTTTAAATTAATATTAAA
93924063 TGTTTAAA
1 TGTTTAAA
93924071 ACTTAAGGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 6 0.16
19 15 0.39
20 2 0.05
21 2 0.05
22 7 0.18
23 6 0.16
ACGTcount: A:0.40, C:0.01, G:0.09, T:0.50
Consensus pattern (19 bp):
TGTTTAAATTAATATTAAA
Found at i:93924031 original size:41 final size:41
Alignment explanation
Indices: 93923984--93924068 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
93923974 GTATAAAATA
93923984 TTATTTAAGATTTGAACTTTGTTTAAATTAATATTAAATGT
1 TTATTTAAGATTTGAACTTTGTTTAAATTAATATTAAATGT
93924025 TTATTTAAGATTTGAACTTTGTTTAAATTAATATTAAATGT
1 TTATTTAAGATTTGAACTTTGTTTAAATTAATATTAAATGT
93924066 TTA
1 TTA
93924069 AAACTTAAGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.52
Consensus pattern (41 bp):
TTATTTAAGATTTGAACTTTGTTTAAATTAATATTAAATGT
Found at i:93928422 original size:58 final size:58
Alignment explanation
Indices: 93928327--93928443 Score: 171
Period size: 58 Copynumber: 2.0 Consensus size: 58
93928317 GGTAAATCAT
* * *
93928327 ATACTTCGATGCTCACACAGAGCTACGGTAGTCCACAACTTATATAGAATTACTACCA
1 ATACATCGATGCTCACACAGAGCTACGGTAGCCCACAACTTATACAGAATTACTACCA
* * * *
93928385 ATACATCGATGCTCATACAGAGCTATGGTAGCCCACAACTTATGCAGAATTGCTACCA
1 ATACATCGATGCTCACACAGAGCTACGGTAGCCCACAACTTATACAGAATTACTACCA
93928443 A
1 A
93928444 ACACTATATC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (58 bp):
ATACATCGATGCTCACACAGAGCTACGGTAGCCCACAACTTATACAGAATTACTACCA
Found at i:93929375 original size:15 final size:15
Alignment explanation
Indices: 93929353--93929384 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
93929343 ATTTCTCATT
93929353 TTTCTTTTTC-TTTG
1 TTTCTTTTTCATTTG
93929367 TTTCTTTTTCATTTG
1 TTTCTTTTTCATTTG
93929382 TTT
1 TTT
93929385 TACATCTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.03, C:0.12, G:0.06, T:0.78
Consensus pattern (15 bp):
TTTCTTTTTCATTTG
Found at i:93929489 original size:8 final size:8
Alignment explanation
Indices: 93929394--93929477 Score: 136
Period size: 8 Copynumber: 10.8 Consensus size: 8
93929384 TTACATCTAT
93929394 ATATAATA
1 ATATAATA
93929402 ATATAAT-
1 ATATAATA
93929409 ATAT-ATA
1 ATATAATA
*
93929416 ATGTAATA
1 ATATAATA
93929424 ATATAATA
1 ATATAATA
93929432 ATATAATA
1 ATATAATA
93929440 ATATAATA
1 ATATAATA
93929448 ATATAATA
1 ATATAATA
93929456 ATATAATA
1 ATATAATA
*
93929464 ACATAATA
1 ATATAATA
93929472 ATATAA
1 ATATAA
93929478 ATTAATATAT
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
6 2 0.03
7 7 0.10
8 61 0.87
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (8 bp):
ATATAATA
Found at i:93931129 original size:21 final size:21
Alignment explanation
Indices: 93931061--93931129 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
93931051 AAGCCTGAAG
*
93931061 GCTGAACAGAAGCTCATGAGA
1 GCTGAACAGAAGCTCATAAGA
* * * *
93931082 GCTAAACAAAAAC-CAATAAGG
1 GCTGAACAGAAGCTC-ATAAGA
* *
93931103 GTTGAACGGAAGCTCATAAGA
1 GCTGAACAGAAGCTCATAAGA
93931124 GCTGAA
1 GCTGAA
93931130 TGGAAACAGA
Statistics
Matches: 34, Mismatches: 12, Indels: 4
0.68 0.24 0.08
Matches are distributed among these distances:
20 1 0.03
21 32 0.94
22 1 0.03
ACGTcount: A:0.43, C:0.17, G:0.25, T:0.14
Consensus pattern (21 bp):
GCTGAACAGAAGCTCATAAGA
Found at i:93935704 original size:21 final size:20
Alignment explanation
Indices: 93935651--93935692 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
93935641 TAGGCATAAA
93935651 TGTGTTCAGAAAGTAGATTT
1 TGTGTTCAGAAAGTAGATTT
93935671 TGTGTTCAGAAAGTAGATTT
1 TGTGTTCAGAAAGTAGATTT
93935691 TG
1 TG
93935693 GATTCAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.40
Consensus pattern (20 bp):
TGTGTTCAGAAAGTAGATTT
Found at i:93938533 original size:26 final size:25
Alignment explanation
Indices: 93938504--93938554 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
93938494 GAAGCAGAAG
93938504 AGAATAGAAAA-AAAAAGAAAGTTAAA
1 AGAATAGAAAAGAAAAA-AAA-TTAAA
*
93938530 AGAATATAAAAGAAAAAAAATTAAA
1 AGAATAGAAAAGAAAAAAAATTAAA
93938555 TTACTCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.22
26 13 0.57
27 5 0.22
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.14
Consensus pattern (25 bp):
AGAATAGAAAAGAAAAAAAATTAAA
Found at i:93953791 original size:33 final size:33
Alignment explanation
Indices: 93953754--93953821 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
93953744 TCATTTCTCC
*
93953754 ATGATATTATCTTACATCACTTGTATTTTTTTA
1 ATGATATCATCTTACATCACTTGTATTTTTTTA
* *
93953787 ATGATATCATCTTAGATCATTTGTATTTTTTTA
1 ATGATATCATCTTACATCACTTGTATTTTTTTA
93953820 AT
1 AT
93953822 TCACTGACAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.28, C:0.10, G:0.07, T:0.54
Consensus pattern (33 bp):
ATGATATCATCTTACATCACTTGTATTTTTTTA
Found at i:93956519 original size:22 final size:22
Alignment explanation
Indices: 93956488--93956529 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
93956478 CTCTTGTGGC
93956488 AGAGGCACACGCCCGTGTGAAG
1 AGAGGCACACGCCCGTGTGAAG
* * *
93956510 AGAGGTACACGGCTGTGTGA
1 AGAGGCACACGCCCGTGTGA
93956530 CTAAAGCACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.21, G:0.38, T:0.14
Consensus pattern (22 bp):
AGAGGCACACGCCCGTGTGAAG
Found at i:93959031 original size:11 final size:11
Alignment explanation
Indices: 93959015--93959039 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
93959005 CTGTGTGTTC
93959015 TTTATTTTATT
1 TTTATTTTATT
93959026 TTTATTTTATT
1 TTTATTTTATT
93959037 TTT
1 TTT
93959040 TTCACAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:93962220 original size:43 final size:43
Alignment explanation
Indices: 93962172--93962262 Score: 182
Period size: 43 Copynumber: 2.1 Consensus size: 43
93962162 TCTCAGAGAT
93962172 AGAAAAGCAAGTAAATTGTACCTAAGTTAGAAGTGGTACACTG
1 AGAAAAGCAAGTAAATTGTACCTAAGTTAGAAGTGGTACACTG
93962215 AGAAAAGCAAGTAAATTGTACCTAAGTTAGAAGTGGTACACTG
1 AGAAAAGCAAGTAAATTGTACCTAAGTTAGAAGTGGTACACTG
93962258 AGAAA
1 AGAAA
93962263 GTTCTTTGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (43 bp):
AGAAAAGCAAGTAAATTGTACCTAAGTTAGAAGTGGTACACTG
Found at i:93965406 original size:21 final size:22
Alignment explanation
Indices: 93965363--93965406 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
93965353 CTAACAAGTG
*
93965363 TTTTCTAAAAAATTATTCAAAT
1 TTTTCTAAAAAAATATTCAAAT
* *
93965385 TTTTC-AAAAAAATCTTCTAAT
1 TTTTCTAAAAAAATATTCAAAT
93965406 T
1 T
93965407 AGAAGCGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.45
Consensus pattern (22 bp):
TTTTCTAAAAAAATATTCAAAT
Found at i:93966895 original size:26 final size:26
Alignment explanation
Indices: 93966859--93966918 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
93966849 ACGGATTTTC
* *
93966859 TCAAGATTTTACCAGGGGTAAAATTG
1 TCAAAATTTTACCAGGGGTAAAATTA
*
93966885 TCAAAATTTTATCAGGGGTAAAATTA
1 TCAAAATTTTACCAGGGGTAAAATTA
93966911 TCAAAATT
1 TCAAAATT
93966919 CTACTGAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACCAGGGGTAAAATTA
Found at i:93968033 original size:18 final size:19
Alignment explanation
Indices: 93968010--93968047 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
93968000 TGGTTTTCTC
*
93968010 AAAATTGAAATG-GAAATG
1 AAAATTAAAATGAGAAATG
93968028 AAAATTAAAATGAGAAATG
1 AAAATTAAAATGAGAAATG
93968047 A
1 A
93968048 TTCATTTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (19 bp):
AAAATTAAAATGAGAAATG
Found at i:93970986 original size:16 final size:17
Alignment explanation
Indices: 93970965--93971001 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
93970955 TCATTCATGA
93970965 TTGTTT-TGCTTTTATT
1 TTGTTTCTGCTTTTATT
*
93970981 TTGTTTCTTCTTTTATT
1 TTGTTTCTGCTTTTATT
93970998 TTGT
1 TTGT
93971002 CCGTTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.05, C:0.08, G:0.11, T:0.76
Consensus pattern (17 bp):
TTGTTTCTGCTTTTATT
Found at i:93971008 original size:17 final size:17
Alignment explanation
Indices: 93970973--93971011 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
93970963 GATTGTTTTG
*
93970973 CTTTTATTTTGTTTCTT
1 CTTTTATTTTGTTCCTT
93970990 CTTTTATTTTG-TCCGTT
1 CTTTTATTTTGTTCC-TT
93971007 CTTTT
1 CTTTT
93971012 CTCTTGGGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.05, C:0.15, G:0.08, T:0.72
Consensus pattern (17 bp):
CTTTTATTTTGTTCCTT
Found at i:93977070 original size:19 final size:20
Alignment explanation
Indices: 93977009--93977075 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 20
93976999 AAATATATAC
93977009 ATAATAA-TATTAA-AATAAA
1 ATAATAAGTA-TAATAATAAA
*
93977028 ATAATAAGTGATAATAGTGAAA
1 ATAATAAGT-ATAATAAT-AAA
93977050 ATAATAAGTATAATAATAAA
1 ATAATAAGTATAATAATAAA
93977070 TATAAT
1 -ATAAT
93977076 GATGTATGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 7 0.17
20 7 0.17
21 15 0.37
22 12 0.29
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.31
Consensus pattern (20 bp):
ATAATAAGTATAATAATAAA
Found at i:93977120 original size:22 final size:22
Alignment explanation
Indices: 93977094--93977137 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
93977084 AAAATAATTC
93977094 TATATATAAAAGTGTATATACTCA
1 TATA-ATAAAA-TGTATATACTCA
*
93977118 TATAATAAAATGTATGTACT
1 TATAATAAAATGTATATACT
93977138 AGTATTAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 6 0.32
24 4 0.21
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (22 bp):
TATAATAAAATGTATATACTCA
Found at i:93977772 original size:26 final size:26
Alignment explanation
Indices: 93977720--93977786 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 26
93977710 AGTAATAATA
93977720 AAAAAGATTAATAATAGTAATAGAAAAT
1 AAAAAGA-TAATAATAG-AATAGAAAAT
*
93977748 ATAAAGATAATAATA-ACATAGAAAAT
1 AAAAAGATAATAATAGA-ATAGAAAAT
*
93977774 AAAAAGGTAATAA
1 AAAAAGATAATAA
93977787 ATATACAGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.03
26 20 0.57
27 8 0.23
28 6 0.17
ACGTcount: A:0.66, C:0.01, G:0.10, T:0.22
Consensus pattern (26 bp):
AAAAAGATAATAATAGAATAGAAAAT
Found at i:93977804 original size:6 final size:6
Alignment explanation
Indices: 93977793--93977817 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
93977783 ATAAATATAC
93977793 AGTAAT AGTAAT AGTAAT AGTAAT A
1 AGTAAT AGTAAT AGTAAT AGTAAT A
93977818 AAATATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (6 bp):
AGTAAT
Found at i:93979079 original size:23 final size:22
Alignment explanation
Indices: 93979013--93979092 Score: 99
Period size: 23 Copynumber: 3.5 Consensus size: 22
93979003 GGCTTGCTAT
**
93979013 TGGGTTTTAGGTGTTTAATGT-GT
1 TGGGTTTT-GG-GTTTAATGTAAA
93979036 TGGGTTTTGAGGTTTAATGTAAA
1 TGGGTTTTG-GGTTTAATGTAAA
93979059 TGGGTTTTGGGATTTAATGTAAA
1 TGGGTTTTGGG-TTTAATGTAAA
93979082 TGGGTTTTGGG
1 TGGGTTTTGGG
93979093 GTTGGGCTTG
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
22 12 0.23
23 40 0.77
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (22 bp):
TGGGTTTTGGGTTTAATGTAAA
Found at i:93982529 original size:18 final size:18
Alignment explanation
Indices: 93982506--93982543 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
93982496 TATTTATGTT
93982506 TTATTTTTATTCATAACC
1 TTATTTTTATTCATAACC
93982524 TTATTTTTATTCATAACC
1 TTATTTTTATTCATAACC
93982542 TT
1 TT
93982544 TAAAATGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.00, T:0.58
Consensus pattern (18 bp):
TTATTTTTATTCATAACC
Found at i:93984169 original size:32 final size:31
Alignment explanation
Indices: 93984099--93984172 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
93984089 ACGTTTACAA
* *
93984099 TTTAGTCACTAAATTATTCAAAAAATTTTAT
1 TTTAGTCATTGAATTATTCAAAAAATTTTAT
** **
93984130 TCAAGTCATTGAATTATTCAAAATTTTTTTAT
1 TTTAGTCATTGAATTATTCAAAA-AATTTTAT
93984162 TTTAGTCATTG
1 TTTAGTCATTG
93984173 GATTGTTAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
31 19 0.56
32 15 0.44
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (31 bp):
TTTAGTCATTGAATTATTCAAAAAATTTTAT
Found at i:93985466 original size:882 final size:870
Alignment explanation
Indices: 93983750--93985503 Score: 2126
Period size: 882 Copynumber: 2.0 Consensus size: 870
93983740 TCATCTAATT
* * *
93983750 TGTGATGTGGATTTATTATTAAATATTAAAAATCTAATTTAGATAACATTAAATAATTCAAATTA
1 TGTGATGGGGATTTATTATAAAATATTAAAAATCTAATTTAGATAACATGAAATAATTCAAATTA
* * *
93983815 CAGAAATTAGGTCATAGCACATTTATGAGGTGAACAATTTATATATCAATTTTTTTTATTTTTAT
66 CAGAAATTAGATCATAGCACATTTATGAGGTGAACAATTTATATATCAA-TATTTATATTTTTAT
* * *
93983880 AAAATAATAAAAATATTTTAGTTGAAATGGTAAATTTAAAAGTTATTAAAAACTAAAATGTTTAG
130 AAAATAATAAAAATATTTTAATTGAAATGATAAATTTAAAAGTTATTAAAAACTAAAATGTTGAG
* * *
93983945 GTTAAAATCTCATTATGAGTATTTTTTTTAGATTTTATATGGAAAATAAAATTACTCTTAATTTA
195 GTTAAAATCTCATAATGAGTATTTTTTTTAGATTTTATATGAAAAATAAAATTAATCTTAATTTA
* ** * *
93984010 TTGCTTATTAAAAATAAGGTAAACTACATTATTAGTCGTTAAGTATCAGTAAGTATTTGTTTTGG
260 TTACTTATTAAAAATAAGGTAAACTACACCATTAGTCATTAAGTATCAGTAAGTATTTGTTTTAG
* * *
93984075 CCACTAAACTAAAAACGTTTACAATTTAGTCACTAAATTATTCAAAAAATTTTATTCAAGTCATT
325 CCACTAAACTAAAAAAGTTTACAATTTAGTCACTAAACTATTCAAAAAATTTTATTCAAGTCACT
*** * * ** *
93984140 GAATTATTCAAAATTTTTTTATTTTAGTCATTGGATTGTTAAGGATTTTTTTTTTTTAAGTTATG
390 GAATTATTCAAAATAAATTTATTTTAGTCACTAGATTGTTAAGGATTTTTTTTTTAAAAGTTATA
* * *
93984205 CCAGTGAGCTTTAAGTGATAATTTGATGATAGGTATGATAGATCAGTACTCAGCAATGAGTAGAA
455 CCAGTGAGCTCTAAGTGACAATTCGATGATAGGTATGATAGATCAGTACTCAGCAATGAGTAGAA
* * * * ** * *
93984270 GAACATAAAGTCAGTGTTGGAGATTGGGGCAAAAGTTGTTTGAATTTTGGTTCGTAAATTCGTGA
520 GAACATAAAGTCAATGTTAGAGATAGAGAAAAAAGTTGTTTGAATTTTGATTCATAAATTCGTGA
* * * * *
93984335 CATCCAAAAATGTTTCATGGAAAAAATTAACTGTAGAAGAGAAATGGAAAGAGAGCTTTTGATTT
585 CATCCAAAAATGTTTCATGAAAAAAATAAACTATAAAAGAGAAAGGGAAAGAGAGCTTTTGATTT
* * *** * * *
93984400 GTGCATATAGTGCGAATAGTAAAAATCATATGGCATCGATCTTAACAGTTCAGTGATCAAATTTT
650 GTGCATATAGTGCGAACAATAAAAATCATAAAACATCAATCTTAACAGTTCAGTGACCAAATTGT
* ** * *
93984465 AACTTTTTTTAAATAGATTATCAAACGAAAACTTATCCATAATTTAATGACTAATGATATAATTT
715 AACTTTTTTTAAATAAACAATCAAACGAAAACTTACCCATAATTTAATGACTAATAATATAATTT
* * *
93984530 ACCCTTAAAAATAACAAGCTTTTGGTAAATTCCCCTAAATCGATTACTGTATAACACGATCTTTA
780 ACCCTTAAAAATAACAAGCTTTTCGTAAATCCCCCTAAATCGATTAC-GTATAACACGATCTTCA
93984595 AGTGCTATA-ATTAATGTAAACGTTCACA
844 AGTGCTATATATTAAT-TAAAC-TTCACA
* * *
93984623 TGTGATGGGGATTTATTATAAAATATTAAAAAATCTAATTTAGTTAAGATGAAATAATTCGAATT
1 TGTGATGGGGATTTATTATAAAATATT-AAAAATCTAATTTAGATAACATGAAATAATTCAAATT
* *
93984688 ACAGAAATTAGATCGTAG-ACATTTATGAGGTGAA-AATTTCATATATTAA-ATTTAT-TTTTTA
65 ACAGAAATTAGATCATAGCACATTTATGAGGTGAACAATTT-ATATATCAATATTTATATTTTTA
* * *
93984749 TAAAATAATAAAAATAATTTTAATTGAAATGATAAGTTTAAAATTTATTAAAAATTAAAATGCTT
129 TAAAATAATAAAAAT-ATTTTAATTGAAATGATAAATTTAAAAGTTATTAAAAACTAAAATG-TT
*
93984814 GATGTTAAAATCTCATAATGAGTAAATATATTTTTTAGATTTTATATGAAAAATAAAATTATATC
192 GAGGTTAAAATCTCATAATGAGT--AT-T-TTTTTTAGATTTTATATGAAAAATAAAATTA-AT-
* * * **
93984879 CTTAAAATAATATTTATTACTTATTAAATATAAGGTAAACTATACCATTAGTCATTAATTATGGG
251 C-T----T-A-ATTTATTACTTATTAAAAATAAGGTAAACTACACCATTAGTCATTAAGTATCAG
* * * * *
93984944 TAAGT-TTTCGTTTTAGTCACTTAACTAAAAAAGTTTACAATTTGGTTACTAAGCTATTC-AAAA
309 TAAGTATTT-GTTTTAGCCACTAAACTAAAAAAGTTTACAATTTAGTCACTAAACTATTCAAAAA
*
93985007 ATTTTCATTTAAGTCACTGAATTATTCAAAA-AAATTTATTTT-GTCACTAGATTGTTAAGG-TT
373 ATTTT-ATTCAAGTCACTGAATTATTCAAAATAAATTTATTTTAGTCACTAGATTGTTAAGGATT
* * * *
93985069 TTTTTTTTAAAAGTTTTACCA-TGAGCTCTAAGTGACAATTCGATTATCA-GTATGGTGGATCAG
437 TTTTTTTTAAAAGTTATACCAGTGAGCTCTAAGTGACAATTCGATGAT-AGGTATGATAGATCAG
* * * *
93985132 TAC-CTATCGATGAGTAGAAGAACAT-ACGTTCAATGTTAGATATCAGAGAAAAAAGTTGTTTGA
501 TACTC-AGCAATGAGTAGAAGAACATAAAG-TCAATGTTAGAGAT-AGAGAAAAAAGTTGTTTGA
* * * * * *
93985195 ATTTTGATTTATAGATTTGTGACGTTCGAAAATGTTTCATGAAAAAAATAAACTATAAAAGAG-A
563 ATTTTGATTCATAAATTCGTGACATCCAAAAATGTTTCATGAAAAAAATAAACTATAAAAGAGAA
* *
93985259 AGGAGAAAGTGAGCTTTTGATTTGTGCATATAGTGCGAACAATAAAAGTCATAAAACATCAATCT
628 AGG-GAAAGAGAGCTTTTGATTTGTGCATATAGTGCGAACAATAAAAATCATAAAACATCAATCT
* *
93985324 TAACAGTTTAGTGACCAAATTGTAACTTTTTTT-AGTCAAACAATCAAAACGAAAACTTACCCAT
692 TAACAGTTCAGTGACCAAATTGTAACTTTTTTTAAAT-AAACAATC-AAACGAAAACTTACCCAT
* * * * *
93985388 AATTTAGTGATTAATAATATAATTTATCCTT-AAAATAATAAGC-TTTCGTAAAATCCCCCAATG
755 AATTTAATGACTAATAATATAATTTACCCTTAAAAATAACAAGCTTTTCGT-AAATCCCCC--TA
*
93985451 AATCGGA-TA-GTATAACACGATCTTCAAGTGCTATATGTTAATTAAACTTCACA
817 AATC-GATTACGTATAACACGATCTTCAAGTGCTATATATTAATTAAACTTCACA
93985504 ACATATATAC
Statistics
Matches: 746, Mismatches: 104, Indels: 54
0.83 0.12 0.06
Matches are distributed among these distances:
870 21 0.03
871 45 0.06
872 27 0.04
873 49 0.07
874 51 0.07
875 1 0.00
876 30 0.04
877 1 0.00
878 1 0.00
879 1 0.00
880 3 0.00
881 82 0.11
882 223 0.30
883 66 0.09
884 28 0.04
885 117 0.16
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (870 bp):
TGTGATGGGGATTTATTATAAAATATTAAAAATCTAATTTAGATAACATGAAATAATTCAAATTA
CAGAAATTAGATCATAGCACATTTATGAGGTGAACAATTTATATATCAATATTTATATTTTTATA
AAATAATAAAAATATTTTAATTGAAATGATAAATTTAAAAGTTATTAAAAACTAAAATGTTGAGG
TTAAAATCTCATAATGAGTATTTTTTTTAGATTTTATATGAAAAATAAAATTAATCTTAATTTAT
TACTTATTAAAAATAAGGTAAACTACACCATTAGTCATTAAGTATCAGTAAGTATTTGTTTTAGC
CACTAAACTAAAAAAGTTTACAATTTAGTCACTAAACTATTCAAAAAATTTTATTCAAGTCACTG
AATTATTCAAAATAAATTTATTTTAGTCACTAGATTGTTAAGGATTTTTTTTTTAAAAGTTATAC
CAGTGAGCTCTAAGTGACAATTCGATGATAGGTATGATAGATCAGTACTCAGCAATGAGTAGAAG
AACATAAAGTCAATGTTAGAGATAGAGAAAAAAGTTGTTTGAATTTTGATTCATAAATTCGTGAC
ATCCAAAAATGTTTCATGAAAAAAATAAACTATAAAAGAGAAAGGGAAAGAGAGCTTTTGATTTG
TGCATATAGTGCGAACAATAAAAATCATAAAACATCAATCTTAACAGTTCAGTGACCAAATTGTA
ACTTTTTTTAAATAAACAATCAAACGAAAACTTACCCATAATTTAATGACTAATAATATAATTTA
CCCTTAAAAATAACAAGCTTTTCGTAAATCCCCCTAAATCGATTACGTATAACACGATCTTCAAG
TGCTATATATTAATTAAACTTCACA
Found at i:93986667 original size:25 final size:26
Alignment explanation
Indices: 93986621--93986677 Score: 89
Period size: 25 Copynumber: 2.2 Consensus size: 26
93986611 CTTTTTTTAA
*
93986621 ATTTTAAAATAAAAAACTATAAAAATT
1 ATTTTAAAAT-AAAAACTATAAAAAAT
93986648 ATTTTAAAAT-AAAACTATAAAAAAT
1 ATTTTAAAATAAAAACTATAAAAAAT
93986673 ATTTT
1 ATTTT
93986678 TTTAAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 19 0.66
27 10 0.34
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (26 bp):
ATTTTAAAATAAAAACTATAAAAAAT
Found at i:93989888 original size:17 final size:17
Alignment explanation
Indices: 93989858--93989897 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
93989848 AAAATTAGGG
93989858 GAAAAAAAAGAAGAAAA
1 GAAAAAAAAGAAGAAAA
*
93989875 GAAAAGAAAA-AAGAAAG
1 GAAAA-AAAAGAAGAAAA
93989892 GAAAAA
1 GAAAAA
93989898 TTAGGGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 16 0.76
18 4 0.19
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (17 bp):
GAAAAAAAAGAAGAAAA
Found at i:94002841 original size:49 final size:49
Alignment explanation
Indices: 94002697--94002843 Score: 143
Period size: 49 Copynumber: 3.0 Consensus size: 49
94002687 AAAATGGCAC
* * * * * *
94002697 ATATGCTAGGCCACTAGTAGGACATGCTAGTTGTTAACCAGGTGGGAGA
1 ATATGATAGGCCACTGGTAAGACATGCTAGTTGTTAACTAGGTTGGCGA
* * * * * *
94002746 ATATGATAAGCCACTGGTAAGGCATGTTAGTTGCTAA-TCAGATTGGCGT
1 ATATGATAGGCCACTGGTAAGACATGCTAGTTGTTAACT-AGGTTGGCGA
* * *
94002795 ATATGTTGGGCCACTGGTACGACATGCTAGTTGTTAACTAGGTTGGCGA
1 ATATGATAGGCCACTGGTAAGACATGCTAGTTGTTAACTAGGTTGGCGA
94002844 CCACTAGTAG
Statistics
Matches: 75, Mismatches: 21, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
49 74 0.99
50 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (49 bp):
ATATGATAGGCCACTGGTAAGACATGCTAGTTGTTAACTAGGTTGGCGA
Found at i:94003161 original size:48 final size:48
Alignment explanation
Indices: 94003081--94003172 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
94003071 AAGAAAGGAT
* *
94003081 TTGAAAAGAGTAAGTTAATATGGCTCTGTATGTGATATATGTTATGTG
1 TTGAAAAGAGTAAGTTAATATGACTCTATATGTGATATATGTTATGTG
* * *
94003129 TTGAAAAGAGTACGTTAATTTGACTCTATATGTGTTATATGTTA
1 TTGAAAAGAGTAAGTTAATATGACTCTATATGTGATATATGTTA
94003173 CGTATAATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (48 bp):
TTGAAAAGAGTAAGTTAATATGACTCTATATGTGATATATGTTATGTG
Found at i:94012631 original size:10 final size:10
Alignment explanation
Indices: 94012616--94012656 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
94012606 TATTTACCTA
94012616 TAATTAAACT
1 TAATTAAACT
* *
94012626 TAATTAATCA
1 TAATTAAACT
94012636 TAATT-AA-T
1 TAATTAAACT
94012644 TAATTAAACT
1 TAATTAAACT
94012654 TAA
1 TAA
94012657 ATTAGCTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
8 5 0.20
9 3 0.12
10 17 0.68
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
TAATTAAACT
Found at i:94012656 original size:14 final size:14
Alignment explanation
Indices: 94012616--94012656 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
94012606 TATTTACCTA
94012616 TAATTAAACTTAAT
1 TAATTAAACTTAAT
*
94012630 TAATCATAA-TTAAT
1 TAATTA-AACTTAAT
94012644 TAATTAAACTTAA
1 TAATTAAACTTAA
94012657 ATTAGCTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 2 0.09
14 19 0.83
15 2 0.09
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
TAATTAAACTTAAT
Found at i:94012682 original size:21 final size:21
Alignment explanation
Indices: 94012647--94012691 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
94012637 AATTAATTAA
94012647 TTAAACTTAAATTAGCTAAACT
1 TTAAACTTAAATTAGCTAAA-T
*
94012669 TTAAGCTT-AATTAGCTAAAT
1 TTAAACTTAAATTAGCTAAAT
94012689 TTA
1 TTA
94012692 GTGGATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.18
21 11 0.50
22 7 0.32
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (21 bp):
TTAAACTTAAATTAGCTAAAT
Found at i:94016953 original size:26 final size:24
Alignment explanation
Indices: 94016906--94016960 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
94016896 TTTCTAGAAT
* * *
94016906 CTAAAACAATATTATTCTTAAATAAA
1 CTAAAACAATAATATCCCT-AA-AAA
*
94016932 CTAAAACAATAATGTCCCTAAAAA
1 CTAAAACAATAATATCCCTAAAAA
94016956 CTAAA
1 CTAAA
94016961 GGTACATCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 8 0.32
25 2 0.08
26 15 0.60
ACGTcount: A:0.55, C:0.16, G:0.02, T:0.27
Consensus pattern (24 bp):
CTAAAACAATAATATCCCTAAAAA
Found at i:94018134 original size:35 final size:37
Alignment explanation
Indices: 94018078--94018168 Score: 150
Period size: 35 Copynumber: 2.5 Consensus size: 37
94018068 AATCATATCG
94018078 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCATA
94018115 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCATA
94018151 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
94018169 TGAAGATTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.37
36 16 0.31
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCATA
Found at i:94018176 original size:17 final size:19
Alignment explanation
Indices: 94018078--94018168 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
94018068 AATCATATCG
94018078 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
94018097 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
94018115 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
94018132 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
94018151 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
94018169 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:94018324 original size:21 final size:20
Alignment explanation
Indices: 94018287--94018325 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
94018277 TTGGACTTCG
**
94018287 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
94018307 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
94018326 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:94018642 original size:45 final size:44
Alignment explanation
Indices: 94018532--94018656 Score: 153
Period size: 43 Copynumber: 2.8 Consensus size: 44
94018522 GCTATCTTTG
* * *
94018532 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTTCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTACTCCA
* * * * *
94018576 ATCTACT-CCTGTCTAATACAGAGATACTAAATCTGTTAACTCCG
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTT-ACTCCA
*
94018620 ATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
94018657 CATCTTGGAT
Statistics
Matches: 66, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
43 26 0.39
44 14 0.21
45 26 0.39
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTACTCCA
Found at i:94018813 original size:78 final size:78
Alignment explanation
Indices: 94018684--94019213 Score: 801
Period size: 78 Copynumber: 6.8 Consensus size: 78
94018674 GATGTAAACA
* * * *
94018684 AATGAAGGTCAGATCTGCTATATCTTTGATCTGTTCCCCGTCTAATACAGAGATGCCAAATCATC
1 AATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
94018749 TTGGATCTGCTTC
66 TTGGATCTGCTTC
* * * * * *
94018762 AATGAAGGTCCA-ATCTGTTATATCTTTGATCTTCTCCCCGTTTAATACAGAGATGCCAAATCAT
1 AATGAAGGT-CAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
94018826 CTTGGATCTGCTTC
65 CTTGGATCTGCTTC
*
94018840 AATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 AATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
94018905 TTGGATCTGCTTC
66 TTGGATCTGCTTC
* *
94018918 AATAAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 AATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
94018983 TTGAATCTGCTTC
66 TTGGATCTGCTTC
* *
94018996 AATGAAGGTCAAATCTGCTGTGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATC
1 AATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
* *
94019061 TTGGATTTGCATC
66 TTGGATCTGCTTC
*
94019074 AATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATC
1 AATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
94019139 TTGGATCTGCTTC
66 TTGGATCTGCTTC
* * * * * * **
94019152 AATAAAGGTCAGATCTGCTATGTCTTCGATCTGTTCTCCGTCGATTATGGAGATGCCAAATC
1 AATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
94019214 TGTTTCTTCG
Statistics
Matches: 414, Mismatches: 36, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
77 1 0.00
78 411 0.99
79 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
AATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
TTGGATCTGCTTC
Found at i:94019101 original size:234 final size:234
Alignment explanation
Indices: 94018618--94019213 Score: 841
Period size: 234 Copynumber: 2.5 Consensus size: 234
94018608 CTGTTAACTC
* *
94018618 CGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCGATGTAAAC
1 CGATCTGCTCCCCGTCTAATACAGAGATGCCAAA----TCATCTTGGATCTGCTTC------AAT
* *
94018683 AAATGAAGGTCAGATCTGCTATATCTTTGATCTGTTCCCCGTCTAATACAGAGATGCCAAATCAT
56 AAA-G-A--TCAGATCTGCTATGTCTTCGATCTGTTCCCCGTCTAATACAGAGATGCCAAATCAT
* * * * * *
94018748 CTTGGATCTGCTTCAATGAAGGTCCAATCTGTTATATCTTTGATCTTCTCCCCGTTTAATACAGA
117 CTTGAATCTGCTTCAATGAAGGTCAAATCTGCTATATCTTCGATCTGCTCCCCGTCTAATACAGA
* *
94018813 GATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTTAGATCTGCTGTGTCTT
182 GATGCCAAATCATCTTGGATCTGCATCAATGAAGGTCAGATCTGCTGTGTCTT
94018866 CGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAGA
1 CGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAGA
* *
94018931 TCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTC
66 TCTGCTATGTCTTCGATCTGTTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTC
* * *
94018996 AATGAAGGTCAAATCTGCTGTGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATC
131 AATGAAGGTCAAATCTGCTATATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
94019061 TTGGATTTGCATCAATGAAGGTCAGATCTGCTGTGTCTT
196 TTGGATCTGCATCAATGAAGGTCAGATCTGCTGTGTCTT
* *
94019100 CGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGGTCAGA
1 CGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAGA
* * * **
94019165 TCTGCTATGTCTTCGATCTGTTCTCCGTCGATTATGGAGATGCCAAATC
66 TCTGCTATGTCTTCGATCTGTTCCCCGTCTAATACAGAGATGCCAAATC
94019214 TGTTTCTTCG
Statistics
Matches: 321, Mismatches: 27, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
234 263 0.82
236 1 0.00
237 1 0.00
238 5 0.02
244 18 0.06
248 33 0.10
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (234 bp):
CGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATAAAGATCAGA
TCTGCTATGTCTTCGATCTGTTCCCCGTCTAATACAGAGATGCCAAATCATCTTGAATCTGCTTC
AATGAAGGTCAAATCTGCTATATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
TTGGATCTGCATCAATGAAGGTCAGATCTGCTGTGTCTT
Found at i:94019231 original size:44 final size:43
Alignment explanation
Indices: 94019174--94019256 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
94019164 ATCTGCTATG
* * *
94019174 TCTTCGATCTGTTCTCCGTCGATTATGGAGATGCCAAATCTGTT
1 TCTTCGATCTGTTCTCCGAC-AGTATAGAGATGCCAAATCTGTT
* *
94019218 TCTTCGATTTGTTCTCTGACAGTATAGAGATGCCAAATC
1 TCTTCGATCTGTTCTCCGACAGTATAGAGATGCCAAATC
94019257 ATCTTAGATC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 17 0.50
44 17 0.50
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (43 bp):
TCTTCGATCTGTTCTCCGACAGTATAGAGATGCCAAATCTGTT
Found at i:94019502 original size:40 final size:41
Alignment explanation
Indices: 94019415--94019515 Score: 123
Period size: 40 Copynumber: 2.4 Consensus size: 41
94019405 CTCTCCGTCG
* * * * *
94019415 AATATAGAGATGCCAAATCTGTTTCTTCGATTTATTCTCTGAA
1 AATACAGAGATGCCAAATC--TATCTTCGATCTACTCCCTGAA
*
94019458 AATACAGAGATGCCAAATC-ATCTTCGATCTACTCCCTGAC
1 AATACAGAGATGCCAAATCTATCTTCGATCTACTCCCTGAA
94019498 AATACAGAGATGCCAAAT
1 AATACAGAGATGCCAAAT
94019516 TTGCTATCTT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
40 34 0.65
43 18 0.35
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (41 bp):
AATACAGAGATGCCAAATCTATCTTCGATCTACTCCCTGAA
Found at i:94019640 original size:224 final size:219
Alignment explanation
Indices: 94019156--94019714 Score: 714
Period size: 224 Copynumber: 2.5 Consensus size: 219
94019146 TGCTTCAATA
* * * *
94019156 AAGGTCAGATCTGCTATGTCTTCGATCTGTTCTCCGTCGATTATGGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
* * ** * * *
94019221 TCGATTTGTTCTCTGACAGTATAGAGATGCCAAATCATCTTAGATCTGTTTCGGCGTAAACACGT
66 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCT-ACTCGCCGCAAACACGA
* * * *
94019286 GAAAGCCAAATCTGTTATATCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTAG
130 GAAAGCCAAATCTGTGATATCTTCAATCTGCTCATTGTAAACGCAAGGATGCCAAATCATCTTAG
*
94019351 ATCTACTTCGATGTGAAGACATCCG
195 ATCTACTTCGATGTGAAAACATCCG
*
94019376 AAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
* * *
94019441 TCGATTTATTCTCTGAAAATACAGAGATGCCAAATCATCTTCGATCTACTC-CCTGACAATACA-
66 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTACTCGCC-G-CAA-ACAC
* * *
94019504 GAG-ATGCCAAAT-T-TGCTATCTTTAATCTGCTCATTGTAAACGCAAGGATGCCAAATTTGCTA
128 GAGAAAGCCAAATCTGTGATATCTTCAATCTGCTCATTGTAAACGCAAGGATGCCAAA--T-C-A
* **
94019566 TCTTTGATCTGCTACTTCGATGTGAAAATGTCCG
189 TCTTAGA--T-CTACTTCGATGTGAAAACATCCG
*
94019600 ACGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
** *
94019665 TCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCTACT
66 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTACT
94019715 TCAGTGTAAA
Statistics
Matches: 296, Mismatches: 33, Indels: 16
0.86 0.10 0.05
Matches are distributed among these distances:
217 36 0.12
218 2 0.01
219 12 0.04
220 107 0.36
221 10 0.03
223 1 0.00
224 128 0.43
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (219 bp):
AAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTACTCGCCGCAAACACGAG
AAAGCCAAATCTGTGATATCTTCAATCTGCTCATTGTAAACGCAAGGATGCCAAATCATCTTAGA
TCTACTTCGATGTGAAAACATCCG
Found at i:94028183 original size:23 final size:22
Alignment explanation
Indices: 94028155--94028199 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
94028145 AAATTAAATA
94028155 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
94028178 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
94028200 AAGATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:94028202 original size:19 final size:19
Alignment explanation
Indices: 94028178--94028250 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
94028168 AATCATATCT
94028178 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
94028197 TCTAAGATT--ATATCATA
1 TCTAAGATTGCATATCATA
94028214 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
94028233 TCTCAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
94028251 TGAAGATTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
17 17 0.33
19 34 0.67
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:94028222 original size:36 final size:37
Alignment explanation
Indices: 94028170--94028250 Score: 123
Period size: 36 Copynumber: 2.2 Consensus size: 37
94028160 GATTACAAAA
94028170 TCATATC-T-TCTAAGATTGCATATCATATCTAAGAT
1 TCATATCATATCTAAGATTGCATATCATATCTAAGAT
*
94028205 T-ATATCATATCTAAGATTGCATATCATATCTCAGAT
1 TCATATCATATCTAAGATTGCATATCATATCTAAGAT
94028241 TGCATATCAT
1 T-CATATCAT
94028251 TGAAGATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
34 5 0.12
35 2 0.05
36 27 0.66
38 7 0.17
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.40
Consensus pattern (37 bp):
TCATATCATATCTAAGATTGCATATCATATCTAAGAT
Done.