Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 297 of 325
Found at i:94667705 original size:3 final size:3
Alignment explanation
Indices: 94667697--94667728 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
94667687 TTGAGGAAAT
94667697 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
94667729 ACGGTAAACG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:94669710 original size:20 final size:19
Alignment explanation
Indices: 94669678--94669715 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
94669668 GAAAGGAAAC
*
94669678 AATGTCATCAATGTACAGA
1 AATGTCATAAATGTACAGA
94669697 AATGATCATAAATGTACAG
1 AATG-TCATAAATGTACAG
94669716 TGCAATGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (19 bp):
AATGTCATAAATGTACAGA
Found at i:94671062 original size:15 final size:16
Alignment explanation
Indices: 94671042--94671072 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
94671032 CGCACGTTGG
94671042 AATATAAA-CTAGAAT
1 AATATAAATCTAGAAT
94671057 AATATAAATCTAGAAT
1 AATATAAATCTAGAAT
94671073 TCAAACATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.29
Consensus pattern (16 bp):
AATATAAATCTAGAAT
Found at i:94675711 original size:34 final size:36
Alignment explanation
Indices: 94675651--94675718 Score: 88
Period size: 34 Copynumber: 1.9 Consensus size: 36
94675641 TGTTGTTTAA
* *
94675651 ATTATAAATATATTATTAATGTTATTATTTTATTAT
1 ATTATAAATATATAATTAATGTTATTATTATATTAT
94675687 ATTATAAAT-TA-AATTAAT-TATATTATTATATT
1 ATTATAAATATATAATTAATGT-TATTATTATATT
94675719 TTGAAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 1 0.03
34 17 0.59
35 2 0.07
36 9 0.31
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (36 bp):
ATTATAAATATATAATTAATGTTATTATTATATTAT
Found at i:94675728 original size:29 final size:29
Alignment explanation
Indices: 94675674--94675732 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
94675664 TATTAATGTT
*
94675674 ATTATTTTATTATATTATAAATTAAATTA
1 ATTATATTATTATATTATAAATTAAATTA
*
94675703 ATTATATTATTATATTTTGAAA-TAAATTA
1 ATTATATTATTATATTAT-AAATTAAATTA
94675732 A
1 A
94675733 GAAACGACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 24 0.89
30 3 0.11
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (29 bp):
ATTATATTATTATATTATAAATTAAATTA
Found at i:94676975 original size:25 final size:24
Alignment explanation
Indices: 94676934--94677129 Score: 165
Period size: 22 Copynumber: 8.3 Consensus size: 24
94676924 GACCTCAGCA
* **
94676934 TGCTCTGTGAATATTAGCACGCCAG
1 TGCTCTCTGAAT-TTAGCACATCAG
94676959 TGCTCTCTGATATTTAGCACATCAG
1 TGCTCTCTGA-ATTTAGCACATCAG
**
94676984 TGCTCTCT-AA-TTAGCACATTTG
1 TGCTCTCTGAATTTAGCACATCAG
* *
94677006 TGCTCTCTGATATTTAACACGTCAG
1 TGCTCTCTGA-ATTTAGCACATCAG
**
94677031 TGCTCTCTG-A-TTAGCACATTTG
1 TGCTCTCTGAATTTAGCACATCAG
*
94677053 TGCTCTCTGATATTTAGCACGTCAG
1 TGCTCTCTGA-ATTTAGCACATCAG
**
94677078 TGCTCTCT-AA-TTAGCACATTTG
1 TGCTCTCTGAATTTAGCACATCAG
* * *
94677100 TGCTCTCTG--TATAACACTTCAG
1 TGCTCTCTGAATTTAGCACATCAG
94677122 TGCTCTCT
1 TGCTCTCT
94677130 ATTCATTAGT
Statistics
Matches: 138, Mismatches: 24, Indels: 21
0.75 0.13 0.11
Matches are distributed among these distances:
22 67 0.49
23 4 0.03
24 4 0.03
25 61 0.44
26 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (24 bp):
TGCTCTCTGAATTTAGCACATCAG
Found at i:94677009 original size:47 final size:47
Alignment explanation
Indices: 94676958--94677130 Score: 280
Period size: 47 Copynumber: 3.7 Consensus size: 47
94676948 TAGCACGCCA
* *
94676958 GTGCTCTCTGATATTTAGCACATCAGTGCTCTCTAATTAGCACATTT
1 GTGCTCTCTGATATTTAACACGTCAGTGCTCTCTAATTAGCACATTT
*
94677005 GTGCTCTCTGATATTTAACACGTCAGTGCTCTCTGATTAGCACATTT
1 GTGCTCTCTGATATTTAACACGTCAGTGCTCTCTAATTAGCACATTT
*
94677052 GTGCTCTCTGATATTTAGCACGTCAGTGCTCTCTAATTAGCACATTT
1 GTGCTCTCTGATATTTAACACGTCAGTGCTCTCTAATTAGCACATTT
*
94677099 GTGCTCTCTG-TA--TAACACTTCAGTGCTCTCTA
1 GTGCTCTCTGATATTTAACACGTCAGTGCTCTCTA
94677131 TTCATTAGTG
Statistics
Matches: 119, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
44 18 0.15
46 2 0.02
47 99 0.83
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.38
Consensus pattern (47 bp):
GTGCTCTCTGATATTTAACACGTCAGTGCTCTCTAATTAGCACATTT
Found at i:94677081 original size:72 final size:71
Alignment explanation
Indices: 94676934--94677085 Score: 166
Period size: 72 Copynumber: 2.1 Consensus size: 71
94676924 GACCTCAGCA
* *
94676934 TGCTCTGTGAATATTAGCACGCCAGTGCTCTCTGATATTTAGCACATCAGTGCTCTCTAATTAGC
1 TGCTCTCTGAATATTAACACGCCAGTGCTCTCTGA-ATTTAGCACATCAGTGCTCTCTAATTAGC
**
94676999 ACATTTG
65 ACATCAG
* **
94677006 TGCTCTCTG-ATATTTAACACGTCAGTGCTCTCTG-A-TTAGCACATTTGTGCTCTCTGATATTT
1 TGCTCTCTGAATA-TTAACACGCCAGTGCTCTCTGAATTTAGCACATCAGTGCTCTCT-A-A-TT
*
94677068 AGCACGTCAG
62 AGCACATCAG
94677078 TGCTCTCT
1 TGCTCTCT
94677086 AATTAGCACA
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
69 18 0.26
70 2 0.03
71 4 0.06
72 44 0.65
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (71 bp):
TGCTCTCTGAATATTAACACGCCAGTGCTCTCTGAATTTAGCACATCAGTGCTCTCTAATTAGCA
CATCAG
Found at i:94679305 original size:34 final size:36
Alignment explanation
Indices: 94679245--94679312 Score: 88
Period size: 34 Copynumber: 1.9 Consensus size: 36
94679235 TGTTGTTTAA
* *
94679245 ATTATAAATATATTATTAATGTTATTATTTTATTAT
1 ATTATAAATATATAATTAATGTTATTATTATATTAT
94679281 ATTATAAAT-TA-AATTAAT-TATATTATTATATT
1 ATTATAAATATATAATTAATGT-TATTATTATATT
94679313 TTGAAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 1 0.03
34 17 0.59
35 2 0.07
36 9 0.31
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (36 bp):
ATTATAAATATATAATTAATGTTATTATTATATTAT
Found at i:94679322 original size:29 final size:29
Alignment explanation
Indices: 94679268--94679326 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
94679258 TATTAATGTT
*
94679268 ATTATTTTATTATATTATAAATTAAATTA
1 ATTATATTATTATATTATAAATTAAATTA
*
94679297 ATTATATTATTATATTTTGAAA-TAAATTA
1 ATTATATTATTATATTAT-AAATTAAATTA
94679326 A
1 A
94679327 GAAAAGACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 24 0.89
30 3 0.11
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (29 bp):
ATTATATTATTATATTATAAATTAAATTA
Found at i:94679648 original size:13 final size:13
Alignment explanation
Indices: 94679630--94679655 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
94679620 CAGGGGAGAA
94679630 AAAAGAAAGAAAG
1 AAAAGAAAGAAAG
94679643 AAAAGAAAGAAAG
1 AAAAGAAAGAAAG
94679656 GGGGAAAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAAAGAAAGAAAG
Found at i:94682880 original size:137 final size:137
Alignment explanation
Indices: 94682634--94683057 Score: 796
Period size: 137 Copynumber: 3.1 Consensus size: 137
94682624 CATTGGGCCT
**
94682634 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
94682699 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCTCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
94682764 CATATGC
131 CATATGC
94682771 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAAC-GGAGCCT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGG-GCCT
94682835 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAA
65 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAA
94682900 ACATATGC
130 ACATATGC
94682908 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
94682973 AGCCCCTTATTCAGATAACAGTATAGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
94683038 CATATGC
131 CATATGC
94683045 AAGCCCATTTGGG
1 AAGCCCATTTGGG
94683058 GAGACTACCC
Statistics
Matches: 281, Mismatches: 4, Indels: 4
0.97 0.01 0.01
Matches are distributed among these distances:
136 2 0.01
137 277 0.99
138 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:94684875 original size:26 final size:26
Alignment explanation
Indices: 94684844--94684951 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
94684834 TGAAATGCCC
94684844 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
94684870 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
94684896 ATCATGGAATATTTACC-AAATCCATT
1 ATCATGGAACATTTACCTAAA-CCATT
*
94684922 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
94684948 ATCA
1 ATCA
94684952 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
25 2 0.03
26 71 0.95
27 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:94684921 original size:52 final size:52
Alignment explanation
Indices: 94684844--94684951 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
94684834 TGAAATGCCC
94684844 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
*
94684896 ATCATGGAATATTTACC-AAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAA-CCATTATCATGGAACATTTACCTAACCCATT
94684948 ATCA
1 ATCA
94684952 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
51 3 0.06
52 51 0.94
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:94694182 original size:29 final size:26
Alignment explanation
Indices: 94694116--94694183 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
94694106 TAAATTTGTT
* *
94694116 AATTTTATTATATTATTTTTAATATAA
1 AATTTCATTA-ATTATTTTTAAAATAA
* *
94694143 AATTACTTTAATTATTATTTAAAATAA
1 AATTTCATTAATTATT-TTTAAAATAA
94694170 TATATTTCATTAAT
1 -A-ATTTCATTAAT
94694184 CAATAATAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
26 6 0.19
27 16 0.50
28 1 0.03
29 9 0.28
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (26 bp):
AATTTCATTAATTATTTTTAAAATAA
Found at i:94694336 original size:13 final size:13
Alignment explanation
Indices: 94694314--94694347 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
94694304 TCTAATGTCA
94694314 TTTTTT-ACTCTC
1 TTTTTTCACTCTC
*
94694326 TTTTTTCACTCTT
1 TTTTTTCACTCTC
94694339 TTTTTTCAC
1 TTTTTTCAC
94694348 AGCCACTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.09, C:0.24, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTTTCACTCTC
Found at i:94696357 original size:16 final size:16
Alignment explanation
Indices: 94696336--94696369 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
94696326 TATAGAACTA
94696336 GAAGTTACAATTTTGT
1 GAAGTTACAATTTTGT
94696352 GAAGTTACAATTTTGT
1 GAAGTTACAATTTTGT
94696368 GA
1 GA
94696370 CTGACTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.41
Consensus pattern (16 bp):
GAAGTTACAATTTTGT
Found at i:94699738 original size:19 final size:21
Alignment explanation
Indices: 94699710--94699749 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
94699700 CAAGATTAAA
94699710 TAAAATATATATTA-TAAAAT
1 TAAAATATATATTATTAAAAT
*
94699730 TAAAA-ATATCTTATTAAAAT
1 TAAAATATATATTATTAAAAT
94699750 GTATAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAAATATATATTATTAAAAT
Found at i:94702519 original size:8 final size:8
Alignment explanation
Indices: 94702508--94702532 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
94702498 CCACCTACCC
94702508 CCCACTTG
1 CCCACTTG
94702516 CCCACTTG
1 CCCACTTG
94702524 CCCACTTG
1 CCCACTTG
94702532 C
1 C
94702533 GCCGAACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.52, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCACTTG
Found at i:94703354 original size:104 final size:105
Alignment explanation
Indices: 94703190--94703381 Score: 278
Period size: 104 Copynumber: 1.8 Consensus size: 105
94703180 TTTGTATTCT
* *
94703190 AGCAAAATTTGCTATCTTGATTAATTTGTTTATTTAGAGCTTTGCTCTCAGCAAATTTTCATCTT
1 AGCAAAATTTGCTATCTTG---AATTTGTTTATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
* *
94703255 ATCCGTTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
63 ATCCATTGTAATAATCTTTTTCATCTTATTCCTCTCGTATCTC
* * *
94703298 AGCAAAATTTGCTATCTTG-ATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTTCATTTTGTC
1 AGCAAAATTTGCTATCTTGAATTTGTTTATTTAGAGCTTTGCTCTCAACAAAATTTCATCTTATC
*
94703362 CATTTTAATAATCTTTTTCA
66 CATTGTAATAATCTTTTTCA
94703382 AGCATTTTTC
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
104 57 0.75
108 19 0.25
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (105 bp):
AGCAAAATTTGCTATCTTGAATTTGTTTATTTAGAGCTTTGCTCTCAACAAAATTTCATCTTATC
CATTGTAATAATCTTTTTCATCTTATTCCTCTCGTATCTC
Found at i:94703889 original size:44 final size:45
Alignment explanation
Indices: 94703764--94704365 Score: 584
Period size: 44 Copynumber: 13.7 Consensus size: 45
94703754 ATAGGTCCTA
* * *
94703764 TCTTCCTATATTGGTAG-GAAGTGGATCAAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * *
94703807 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
94703852 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* *
94703896 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * *
94703939 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
94703984 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* *
94704028 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
94704071 TCTTCCCATATTGGTGGCGAAGTAGATCGTAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
94704116 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* **
94704160 TCTTCCTATATTGGTAG-GAAGGGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
94704203 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGGTCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
94704248 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
94704292 TCTTCCTATATTGATAG-GAAGTGGATCCAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
94704335 TCTTCCCATACTAGTGGTGAAGTAGATCGAA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAA
94704366 AAAAAAAAAA
Statistics
Matches: 450, Mismatches: 96, Indels: 25
0.79 0.17 0.04
Matches are distributed among these distances:
43 103 0.23
44 260 0.58
45 87 0.19
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (45 bp):
TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
Found at i:94703996 original size:132 final size:132
Alignment explanation
Indices: 94703759--94704365 Score: 1106
Period size: 132 Copynumber: 4.6 Consensus size: 132
94703749 CGTAAATAGG
*
94703759 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
94703824 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
94703889 GA
131 GA
94703891 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
94703956 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
94704021 GA
131 GA
94704023 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
94704088 CGAAGTAGATCGTAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
94704153 GA
131 GA
*
94704155 TCCTATCTTCCTATATTGGTAGGAAGGGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* * *
94704220 CGAAGTAGATCGCAGAAAGCAGGTCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
*
94704285 GG
131 GA
* * * *
94704287 TCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATACTAGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
94704352 TGAAGTAGATCGAA
66 CGAAGTAGATCGAA
94704366 AAAAAAAAAA
Statistics
Matches: 461, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 461 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (132 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
GA
Found at i:94704549 original size:45 final size:46
Alignment explanation
Indices: 94704490--94704686 Score: 122
Period size: 46 Copynumber: 4.4 Consensus size: 46
94704480 CCCTGACTAT
* * * *
94704490 AGTGGAGTACATTGAAGCCGATA-ATTCTATCTCCCTGTATTTGGC
1 AGTGGAATAGATTGAAGACGATAGATTCTACCTCCCTGTATTTGGC
** * *
94704535 AGTGGAATAGATTGAAGATTACAGA-TCTTACCTTCCTGTATTTGGC
1 AGTGGAATAGATTGAAGACGATAGATTC-TACCTCCCTGTATTTGGC
* * ** * * * *
94704581 AG-CGAAGCAGATCAAAGATG-TCAGATTTTACCTCCCTG-A-CT-AC
1 AGTGGAA-TAGATTGAAGACGAT-AGATTCTACCTCCCTGTATTTGGC
* * * * *
94704624 AGTGGAGTACATTGAAGCCGATA-ACTCTATCTCCCTGTATTTGGC
1 AGTGGAATAGATTGAAGACGATAGATTCTACCTCCCTGTATTTGGC
94704669 AGTGGAATAGATTGAAGA
1 AGTGGAATAGATTGAAGA
94704687 TTACAGATCT
Statistics
Matches: 108, Mismatches: 34, Indels: 20
0.67 0.21 0.12
Matches are distributed among these distances:
42 11 0.10
43 12 0.11
44 5 0.05
45 39 0.36
46 40 0.37
47 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (46 bp):
AGTGGAATAGATTGAAGACGATAGATTCTACCTCCCTGTATTTGGC
Found at i:94704581 original size:46 final size:46
Alignment explanation
Indices: 94704520--94704705 Score: 152
Period size: 46 Copynumber: 4.1 Consensus size: 46
94704510 ATAATTCTAT
94704520 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTAC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTAC
* * * ** *
94704566 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGT-CAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGAT-TACAGATCTTAC
* * * * *** * *
94704612 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-A-CTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCT-TAC
*
94704654 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTAC
94704700 CTCCCT
1 CTCCCT
94704706 AAGCAATAAT
Statistics
Matches: 101, Mismatches: 29, Indels: 20
0.67 0.19 0.13
Matches are distributed among these distances:
41 1 0.01
42 10 0.10
43 11 0.11
44 4 0.04
45 22 0.22
46 50 0.50
47 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTAC
Found at i:94704653 original size:134 final size:134
Alignment explanation
Indices: 94704408--94704698 Score: 519
Period size: 134 Copynumber: 2.2 Consensus size: 134
94704398 TGGTTTGAAG
* * * *
94704408 TAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCGGAT
1 TAGATTGAAGATTACAGATCTTACCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
* *
94704473 TTTACCTCCCTGACTATAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
94704538 GGAA
131 GGAA
*
94704542 TAGATTGAAGATTACAGATCTTACCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
1 TAGATTGAAGATTACAGATCTTACCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
94704607 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
94704672 GGAA
131 GGAA
94704676 TAGATTGAAGATTACAGATCTTA
1 TAGATTGAAGATTACAGATCTTA
94704699 TCTCCCTAAG
Statistics
Matches: 150, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
134 150 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (134 bp):
TAGATTGAAGATTACAGATCTTACCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
GGAA
Found at i:94704909 original size:43 final size:40
Alignment explanation
Indices: 94704824--94704909 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
94704814 AGATTTCAGG
* * * *
94704824 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACACCCAA
1 TCTTATCTCCCTAAATAGTAGTGGAGCAGATAAAACCAAA
94704864 TCTTATCTCCCTAAATAGTAGTGGAGCAGACTAAAAACACAAA
1 TCTTATCTCCCTAAATAGTAGTGGAGCAGA-T-AAAAC-CAAA
94704907 TCT
1 TCT
94704910 CATCCCCATG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
40 29 0.74
41 1 0.03
42 3 0.08
43 6 0.15
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (40 bp):
TCTTATCTCCCTAAATAGTAGTGGAGCAGATAAAACCAAA
Found at i:94705275 original size:8 final size:8
Alignment explanation
Indices: 94705264--94705288 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
94705254 CCACCTACCC
94705264 CCCACTTG
1 CCCACTTG
94705272 CCCACTTG
1 CCCACTTG
94705280 CCCACTTG
1 CCCACTTG
94705288 C
1 C
94705289 GCCGAACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.52, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCACTTG
Found at i:94705805 original size:17 final size:17
Alignment explanation
Indices: 94705785--94705834 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
94705775 TTCCCCCTCC
94705785 CTTCTCTCTCCCTCTCT
1 CTTCTCTCTCCCTCTCT
*
94705802 CTTCTCTCTCTCTCTCT
1 CTTCTCTCTCCCTCTCT
* * *
94705819 TTTTTCTTTCCCTCTC
1 CTTCTCTCTCCCTCTC
94705835 CCCAAATGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (17 bp):
CTTCTCTCTCCCTCTCT
Found at i:94705807 original size:15 final size:15
Alignment explanation
Indices: 94705789--94705819 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
94705779 CCCTCCCTTC
94705789 TCTCTCCCTCTCTCT
1 TCTCTCCCTCTCTCT
*
94705804 TCTCTCTCTCTCTCT
1 TCTCTCCCTCTCTCT
94705819 T
1 T
94705820 TTTTCTTTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (15 bp):
TCTCTCCCTCTCTCT
Found at i:94706342 original size:23 final size:23
Alignment explanation
Indices: 94706298--94706343 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
94706288 TTACCATTAT
*
94706298 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
94706321 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
94706344 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:94706610 original size:19 final size:19
Alignment explanation
Indices: 94706575--94706611 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94706565 ATATATTACC
**
94706575 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
94706594 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
94706612 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:94718149 original size:104 final size:105
Alignment explanation
Indices: 94717985--94718176 Score: 278
Period size: 104 Copynumber: 1.8 Consensus size: 105
94717975 TTTGTATTCT
* *
94717985 AGCAAAATTTGCTATCTTGATTAATTTGTTTATTTAGAGCTTTGCTCTCAGCAAATTTTCATCTT
1 AGCAAAATTTGCTATCTTG---AATTTGTTTATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
* *
94718050 ATCCGTTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
63 ATCCATTGTAATAATCTTTTTCATCTTATTCCTCTCGTATCTC
* * *
94718093 AGCAAAATTTGCTATCTTG-ATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTTCATTTTGTC
1 AGCAAAATTTGCTATCTTGAATTTGTTTATTTAGAGCTTTGCTCTCAACAAAATTTCATCTTATC
*
94718157 CATTTTAATAATCTTTTTCA
66 CATTGTAATAATCTTTTTCA
94718177 AGCATTTTTC
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
104 57 0.75
108 19 0.25
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (105 bp):
AGCAAAATTTGCTATCTTGAATTTGTTTATTTAGAGCTTTGCTCTCAACAAAATTTCATCTTATC
CATTGTAATAATCTTTTTCATCTTATTCCTCTCGTATCTC
Found at i:94718684 original size:44 final size:45
Alignment explanation
Indices: 94718559--94719259 Score: 588
Period size: 44 Copynumber: 15.8 Consensus size: 45
94718549 ATAGGTCCTA
* * *
94718559 TCTTCCTATATTGGTAG-GAAGTGGATCAAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * *
94718602 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
94718647 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* *
94718691 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * *
94718734 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
94718779 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* *
94718823 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
94718866 TCTTCCCATATTGGTGGCGAAGTAGATCGTAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
94718911 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* **
94718955 TCTTCCTATATTGGTAG-GAAGGGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
94718998 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGGTCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
94719043 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
94719087 TCTTCCTATATTGATAG-GAAGTGGATCCAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * * * *
94719130 TCTTCCCATACTAGTGGTGAAGTAGATCGAAAAAAAAAAAAGCAGATCTGG
1 TCTTCCTATATTGGTCGCGAAGTAGATCG------AAGATAGCAGATCTTG
* * ** *
94719181 TATTCATATATTGGT-TTGAAGTAGATCGAAGATTGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
94719225 CCTTCCTGTATTTGG-CAGCGAAGCAGATCAAAGAT
1 TCTTCCTATA-TTGGTC-GCGAAGTAGATCGAAGAT
94719260 GGCGGATTTT
Statistics
Matches: 518, Mismatches: 117, Indels: 43
0.76 0.17 0.06
Matches are distributed among these distances:
43 103 0.20
44 276 0.53
45 91 0.18
46 14 0.03
50 15 0.03
51 19 0.04
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAGCAGATCTTG
Found at i:94718791 original size:132 final size:132
Alignment explanation
Indices: 94718554--94719160 Score: 1106
Period size: 132 Copynumber: 4.6 Consensus size: 132
94718544 CGTAAATAGG
*
94718554 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
94718619 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
94718684 GA
131 GA
94718686 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
94718751 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
94718816 GA
131 GA
94718818 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
94718883 CGAAGTAGATCGTAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
94718948 GA
131 GA
*
94718950 TCCTATCTTCCTATATTGGTAGGAAGGGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* * *
94719015 CGAAGTAGATCGCAGAAAGCAGGTCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
*
94719080 GG
131 GA
* * * *
94719082 TCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATACTAGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
94719147 TGAAGTAGATCGAA
66 CGAAGTAGATCGAA
94719161 AAAAAAAAAA
Statistics
Matches: 461, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 461 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (132 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
GA
Found at i:94719440 original size:133 final size:134
Alignment explanation
Indices: 94719202--94719491 Score: 510
Period size: 133 Copynumber: 2.2 Consensus size: 134
94719192 TGGTTTGAAG
* * * *
94719202 TAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCGGAT
1 TAGATTGAAGATTACAGATCTTACCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
* *
94719267 TTTACCTCCCTGACTATAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTA-TTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
94719331 GGAA
131 GGAA
*
94719335 TAGATTGAAGATTACAGATCTTACCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGTCAGAT
1 TAGATTGAAGATTACAGATCTTACCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
94719400 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
94719465 GGAA
131 GGAA
94719469 TAGATTGAAGATTACAGATCTTA
1 TAGATTGAAGATTACAGATCTTA
94719492 TCTCCCTAAG
Statistics
Matches: 149, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
133 114 0.77
134 35 0.23
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (134 bp):
TAGATTGAAGATTACAGATCTTACCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
GGAA
Found at i:94719585 original size:132 final size:133
Alignment explanation
Indices: 94719237--94719631 Score: 430
Period size: 133 Copynumber: 3.0 Consensus size: 133
94719227 TTCCTGTATT
* *
94719237 TGGCAGCGAAGCAGATCAAAGATGGCGGATTTTACCTCCCTGACTATAGTGGAGTACATTGAAGC
1 TGGCA-CGAAG-AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGC
* *
94719302 CGATAATTCTATCTCCCTGTATTGGCAGTGGAATAGATTGAAGATTACAGATCTTACCTTCCT--
64 CGATAATTCTATCTCCCTGTATTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAA
* *
94719365 GTATT
129 GAATA
*
94719370 TGGCAGCGAAGCAGATCAAAGATGTCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGC
1 TGGCA-CGAAG-AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGC
*
94719435 CGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA
64 CGATAATTCTATCTCCCTGTA-TTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA
94719500 AGCAATAA
128 AG-AAT-A
* ** * * * * *
94719508 TGG-A-GTAG-G-TTGAAGACGGCAGATTTTACCTCACTGATTACAATGGAGTACATTGAAGCTG
1 TGGCACGAAGAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCG
* * * ** * * *
94719569 TTAGTTCTA-CTTCCCTGGGA--AACATTGGAATAGATTGAAGATTTCAGGTCTTATCTCCCTAA
66 ATAATTCTATC-TCCCT-GTATTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAA
94719631 G
129 G
94719632 TAGTAGTGGA
Statistics
Matches: 229, Mismatches: 26, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
130 38 0.17
131 1 0.00
132 55 0.24
133 85 0.37
134 40 0.17
135 3 0.01
136 1 0.00
137 3 0.01
138 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (133 bp):
TGGCACGAAGAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCG
ATAATTCTATCTCCCTGTATTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGA
ATA
Found at i:94719702 original size:43 final size:40
Alignment explanation
Indices: 94719617--94719702 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
94719607 AGATTTCAGG
* * * *
94719617 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACACCCAA
1 TCTTATCTCCCTAAATAGTAGTGGAGCAGATAAAACCAAA
94719657 TCTTATCTCCCTAAATAGTAGTGGAGCAGACTAAAAACACAAA
1 TCTTATCTCCCTAAATAGTAGTGGAGCAGA-T-AAAAC-CAAA
94719700 TCT
1 TCT
94719703 CATCCCCATG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
40 29 0.74
41 1 0.03
42 3 0.08
43 6 0.15
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (40 bp):
TCTTATCTCCCTAAATAGTAGTGGAGCAGATAAAACCAAA
Found at i:94720068 original size:8 final size:8
Alignment explanation
Indices: 94720057--94720081 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
94720047 CCACCTACCC
94720057 CCCACTTG
1 CCCACTTG
94720065 CCCACTTG
1 CCCACTTG
94720073 CCCACTTG
1 CCCACTTG
94720081 C
1 C
94720082 GCCGAACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.52, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCACTTG
Found at i:94720503 original size:6 final size:6
Alignment explanation
Indices: 94720492--94720516 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
94720482 GCGTGCGGTG
94720492 GCCGGC GCCGGC GCCGGC GCCGGC G
1 GCCGGC GCCGGC GCCGGC GCCGGC G
94720517 AGCCTCCGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.48, G:0.52, T:0.00
Consensus pattern (6 bp):
GCCGGC
Found at i:94720622 original size:24 final size:23
Alignment explanation
Indices: 94720575--94720630 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
94720565 CCTTTCCCCC
94720575 TCCCTTCTCTCTCCCTTCTCTCTT
1 TCCC-TCTCTCTCCCTTCTCTCTT
* * * *
94720599 CTCTCTCTCTCTCTCTTTTTTCTT
1 -TCCCTCTCTCTCCCTTCTCTCTT
94720623 TCCCTCTC
1 TCCCTCTC
94720631 CCCAAATGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 7 0.27
24 16 0.62
25 3 0.12
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (23 bp):
TCCCTCTCTCTCCCTTCTCTCTT
Found at i:94721139 original size:23 final size:23
Alignment explanation
Indices: 94721095--94721140 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
94721085 TTACCATTAT
*
94721095 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
94721118 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
94721141 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:94721407 original size:19 final size:19
Alignment explanation
Indices: 94721372--94721408 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94721362 ATATATTACC
**
94721372 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
94721391 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
94721409 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:94726272 original size:23 final size:21
Alignment explanation
Indices: 94726245--94726294 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
94726235 AGTAATATAC
*
94726245 AAAATAATATACATTAATTTAA
1 AAAATAATATACA-TAAATTAA
*
94726267 ATAAATAATATCCATAAATTAA
1 A-AAATAATATACATAAATTAA
94726289 AAAATA
1 AAAATA
94726295 GTTTAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 5 0.20
22 9 0.36
23 11 0.44
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAATAATATACATAAATTAA
Found at i:94726538 original size:26 final size:26
Alignment explanation
Indices: 94726509--94726571 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
94726499 TAAAACAGTT
*
94726509 TTAAAAAAAACTAAATAA-TAAATAAA
1 TTAAAAAAAA-TAAAGAATTAAATAAA
* *
94726535 TTAAAAGAAATAAAGAATTACATAAA
1 TTAAAAAAAATAAAGAATTAAATAAA
* *
94726561 CTAAAATAAAT
1 TTAAAAAAAAT
94726572 GAACTCAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 6 0.19
26 25 0.81
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (26 bp):
TTAAAAAAAATAAAGAATTAAATAAA
Found at i:94731819 original size:120 final size:120
Alignment explanation
Indices: 94731662--94732292 Score: 1016
Period size: 120 Copynumber: 5.2 Consensus size: 120
94731652 TATATTTAGA
* * * * *
94731662 AAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 AAAA-TATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGT
*
94731727 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATCATATATTTTAATT
65 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATT
* * * *
94731783 AAAATATATTTAATAATAATTAT-TTCAAATTATATTTTATAGTATCATATATTATAATTTTAGT
1 AAAATATATTTAATAATAATTATGTT-AATTTATATTTTACAGTATCATATATTATGATTTGAGT
* * *
94731847 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
65 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATT
94731903 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
1 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
* *
94731968 AATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATATAGTTTAATT
66 AATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAATTATATATTTTAATT
*
94732023 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTA
1 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
*
94732088 AATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
66 AATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAATTATATATTTTAATT
94732143 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
1 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
* *
94732208 AATTCATATAAGAATATTGATTATTAAGAATTTTATTATAAATTATATATTTTAATT
66 AATTCATATAAGAATATTTAATATTAAGAATTTTA-T-TAAATTATATATTTTAATT
94732265 AAAATATATTTAATAATAATTATGTTAA
1 AAAATATATTTAATAATAATTATGTTAA
94732293 AATATGATTA
Statistics
Matches: 485, Mismatches: 19, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
119 4 0.01
120 425 0.88
121 9 0.02
122 47 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.48
Consensus pattern (120 bp):
AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
AATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATT
Found at i:94732145 original size:18 final size:17
Alignment explanation
Indices: 94732117--94732151 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
94732107 ATTATTAAGA
*
94732117 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
94732134 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
94732152 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:94732272 original size:18 final size:19
Alignment explanation
Indices: 94732237--94732273 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
94732227 ATTATTAAGA
94732237 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
94732256 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
94732274 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:94732530 original size:16 final size:16
Alignment explanation
Indices: 94732509--94732577 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
94732499 TATTAGCTAT
94732509 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
94732525 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
94732542 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
94732558 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
94732574 TACA
1 TACA
94732578 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:94732551 original size:33 final size:32
Alignment explanation
Indices: 94732509--94732577 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
94732499 TATTAGCTAT
94732509 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
94732542 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
94732574 TACA
1 TACA
94732578 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:94735445 original size:20 final size:17
Alignment explanation
Indices: 94735420--94735459 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 17
94735410 TTTTTAAAAA
94735420 ATTAAAATATATATTTAATT
1 ATTAAAATA-AT-TTT-ATT
94735440 ATTAAAATAATTTTATT
1 ATTAAAATAATTTTATT
94735457 ATT
1 ATT
94735460 TTAAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 3 0.15
19 2 0.10
20 9 0.45
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTAAAATAATTTTATT
Found at i:94735482 original size:9 final size:8
Alignment explanation
Indices: 94735458--94735488 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
94735448 AATTTTATTA
94735458 TTTTAAAT
1 TTTTAAAT
94735466 TTTTAAAT
1 TTTTAAAT
*
94735474 TTTTAAAA
1 TTTTAAAT
94735482 TTTTAAA
1 TTTTAAA
94735489 AAATTAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TTTTAAAT
Found at i:94740071 original size:14 final size:14
Alignment explanation
Indices: 94740052--94740079 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
94740042 CAATTTCACC
94740052 ATTTTTAAAACATT
1 ATTTTTAAAACATT
94740066 ATTTTTAAAACATT
1 ATTTTTAAAACATT
94740080 TAACTGTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTTTAAAACATT
Found at i:94741408 original size:125 final size:125
Alignment explanation
Indices: 94741279--94741712 Score: 503
Period size: 125 Copynumber: 3.4 Consensus size: 125
94741269 GCCAAACGGT
* * * * * * * *
94741279 AAATCGCAACCCAACACGATTGGGCACGATTTATCGAATTTTCAAATACAAAATATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGCCTCATT
* * * *
94741344 TTAATTTAAGAAAACATGGATGAAATGTCGAAAGGATATTCCGTATCTTAGTCGAATGAA
66 TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAA
* *
94741404 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGGAATATTGCCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGCCTCATT
*** * *
94741469 TTAATTTAAGAAAGTGTGGATGAAATTTCAAAAAGATATTCCATATTTTAGTTGAATGAA
66 TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAA
* * * * *
94741529 AAAACGAAACCCAGCACGATTGGGCATGACCTCTCAAACTCCCAAATATGAAATATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGCCTCATT
* * ** *
94741594 TTAATTTTTAAAAAAAAGCATGGACGAAATTTTTAAAGGATATTCCATATTTTAGCTC-AACGAA
66 TTAA--TTT-AAGAAAA-CATGGATGAAATTTCAAAAGGATATTCCATATTTTAG-TCGAATGAA
* * * *
94741658 AAATCGAAACTCAGCACGATTGGGCACGATTTCTCAGACCTT-CAAACACGAAATA
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCA-AACTTCCAAATACGAAATA
94741713 ATTCTTTAAG
Statistics
Matches: 258, Mismatches: 45, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
125 168 0.65
127 3 0.01
128 5 0.02
129 78 0.30
130 4 0.02
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGCCTCATT
TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAA
Found at i:94742445 original size:23 final size:22
Alignment explanation
Indices: 94742403--94742445 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
94742393 TACAATACAA
*
94742403 GTAATTTAATAAAAATAATAGC
1 GTAATTTAATAAAAAGAATAGC
94742425 GTAATATTAA-AACAAAGAATA
1 GTAAT-TTAATAA-AAAGAATA
94742446 TTTATTACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.58, C:0.05, G:0.09, T:0.28
Consensus pattern (22 bp):
GTAATTTAATAAAAAGAATAGC
Found at i:94742497 original size:60 final size:60
Alignment explanation
Indices: 94742433--94742556 Score: 239
Period size: 60 Copynumber: 2.1 Consensus size: 60
94742423 GCGTAATATT
*
94742433 AAAACAAAGAATATTTATTACAGAAAATTTTAAAAAAGTGTGTTATAAGATAAAATATAA
1 AAAACAAAGAATATTTATTACAGAAAATTTTAAAAAAGTGTGTTACAAGATAAAATATAA
94742493 AAAACAAAGAATATTTATTACAGAAAATTTTAAAAAAGTGTGTTACAAGATAAAATATAA
1 AAAACAAAGAATATTTATTACAGAAAATTTTAAAAAAGTGTGTTACAAGATAAAATATAA
94742553 AAAA
1 AAAA
94742557 TATTCAAATG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.28
Consensus pattern (60 bp):
AAAACAAAGAATATTTATTACAGAAAATTTTAAAAAAGTGTGTTACAAGATAAAATATAA
Found at i:94742520 original size:32 final size:31
Alignment explanation
Indices: 94742433--94742521 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 31
94742423 GCGTAATATT
*
94742433 AAAACAAAGAATATTTATTACAGAAAATT-T
1 AAAACAAAGAATATTTATTACAGAAAATTAA
* * * * *
94742463 TAAA-AAAG--TGTGTTATAAGATAAAATATAA
1 AAAACAAAGAATAT-TTATTACAGAAAAT-TAA
94742493 AAAACAAAGAATATTTATTACAGAAAATT
1 AAAACAAAGAATATTTATTACAGAAAATT
94742522 TTAAAAAAGT
Statistics
Matches: 42, Mismatches: 11, Indels: 11
0.66 0.17 0.17
Matches are distributed among these distances:
27 2 0.05
28 11 0.26
29 5 0.12
30 6 0.14
31 5 0.12
32 11 0.26
33 2 0.05
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.29
Consensus pattern (31 bp):
AAAACAAAGAATATTTATTACAGAAAATTAA
Found at i:94742528 original size:32 final size:32
Alignment explanation
Indices: 94742433--94742528 Score: 94
Period size: 32 Copynumber: 3.1 Consensus size: 32
94742423 GCGTAATATT
94742433 AAAACAAAGAATATTTATTACAGAAAATTTT-
1 AAAACAAAGAATATTTATTACAGAAAATTTTA
* * * * * *
94742464 -AAA-AAAG--TGTGTTATAAGATAAAATATAA
1 AAAACAAAGAATAT-TTATTACAGAAAATTTTA
94742493 AAAACAAAGAATATTTATTACAGAAAATTTTA
1 AAAACAAAGAATATTTATTACAGAAAATTTTA
94742525 AAAA
1 AAAA
94742529 AGTGTGTTAC
Statistics
Matches: 47, Mismatches: 12, Indels: 11
0.67 0.17 0.16
Matches are distributed among these distances:
27 2 0.04
28 12 0.26
29 4 0.09
30 6 0.13
31 4 0.09
32 17 0.36
33 2 0.04
ACGTcount: A:0.58, C:0.04, G:0.08, T:0.29
Consensus pattern (32 bp):
AAAACAAAGAATATTTATTACAGAAAATTTTA
Found at i:94750477 original size:31 final size:30
Alignment explanation
Indices: 94750410--94750481 Score: 90
Period size: 31 Copynumber: 2.4 Consensus size: 30
94750400 TGTATACACG
* *
94750410 AACTTTAATTTGGTGCAATTATACACGTGA
1 AACTTTAATTTGGTGCAAATATACACGTAA
* * *
94750440 AACTTTAATTGTGGTTCAAATGTATACGTAA
1 AACTTTAATT-TGGTGCAAATATACACGTAA
94750471 AACTTTAATTT
1 AACTTTAATTT
94750482 TGATTTAATC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 11 0.31
31 25 0.69
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.40
Consensus pattern (30 bp):
AACTTTAATTTGGTGCAAATATACACGTAA
Found at i:94755028 original size:16 final size:17
Alignment explanation
Indices: 94754996--94755028 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
94754986 CTTCTAACCA
94754996 CAAAAATAAACTTATTT
1 CAAAAATAAACTTATTT
*
94755013 CAAAGATAAA-TTATTT
1 CAAAAATAAACTTATTT
94755029 ATTATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (17 bp):
CAAAAATAAACTTATTT
Found at i:94756827 original size:15 final size:14
Alignment explanation
Indices: 94756767--94756826 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 14
94756757 TTTTACATTA
94756767 TTATTTT-TTTTAT
1 TTATTTTATTTTAT
94756780 TTACTATTTA-TTTAT
1 TTA-T-TTTATTTTAT
* *
94756795 ATATTTTATAATTATT
1 TTATTTTAT-TTTA-T
94756811 TTATTTTATTTTAT
1 TTATTTTATTTTAT
94756825 TT
1 TT
94756827 TGTAAGTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
13 7 0.19
14 5 0.14
15 16 0.43
16 9 0.24
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATTTTATTTTAT
Found at i:94762345 original size:17 final size:19
Alignment explanation
Indices: 94762320--94762356 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
94762310 AAAAGAAATA
94762320 ATTTCAAT-AATATA-ATT
1 ATTTCAATAAATATATATT
*
94762337 ATTTTAATAAATATATATT
1 ATTTCAATAAATATATATT
94762356 A
1 A
94762357 AAATTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 7 0.41
18 6 0.35
19 4 0.24
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTCAATAAATATATATT
Found at i:94764155 original size:27 final size:27
Alignment explanation
Indices: 94764075--94764160 Score: 88
Period size: 27 Copynumber: 3.1 Consensus size: 27
94764065 ATTAAATTAA
* * *
94764075 ATTAAAACAATTAACAGCTAAATTCAG
1 ATTATAACAATTAACAACTAAATTCGG
94764102 ATTATAGA-AA-T-ACAAACTAGAAATTCGG
1 ATTATA-ACAATTAAC-AACT--AAATTCGG
94764130 ATTATAACAATTAACAACTAAATTCGG
1 ATTATAACAATTAACAACTAAATTCGG
94764157 ATTA
1 ATTA
94764161 AATAATATTA
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
25 2 0.04
26 4 0.08
27 20 0.41
28 16 0.33
29 5 0.10
30 2 0.04
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.28
Consensus pattern (27 bp):
ATTATAACAATTAACAACTAAATTCGG
Found at i:94770417 original size:28 final size:28
Alignment explanation
Indices: 94770377--94770432 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
94770367 TTTTATTACA
94770377 TATATCGTAACTAAATCCATCCATGATC
1 TATATCGTAACTAAATCCATCCATGATC
94770405 TATATCGTAACTAAATCCATCCATGATC
1 TATATCGTAACTAAATCCATCCATGATC
94770433 ATGTATATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (28 bp):
TATATCGTAACTAAATCCATCCATGATC
Found at i:94776225 original size:16 final size:17
Alignment explanation
Indices: 94776204--94776236 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
94776194 TAAATGAGTT
94776204 AATTAGGAT-TAAATTG
1 AATTAGGATATAAATTG
*
94776220 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
94776237 GATAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.36
Consensus pattern (17 bp):
AATTAGGATATAAATTG
Found at i:94776465 original size:31 final size:31
Alignment explanation
Indices: 94776430--94776493 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
94776420 TTAATTGTTA
*
94776430 TATTTTAATTAAGATGCATGGTAGATAAATT
1 TATTTTAATTAAAATGCATGGTAGATAAATT
94776461 TATTTTAATTAAAATGCATGGTAGATAAATT
1 TATTTTAATTAAAATGCATGGTAGATAAATT
94776492 TA
1 TA
94776494 GGAAAGTAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.42
Consensus pattern (31 bp):
TATTTTAATTAAAATGCATGGTAGATAAATT
Found at i:94777128 original size:44 final size:44
Alignment explanation
Indices: 94777065--94777148 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
94777055 TGTTTAGGGA
94777065 TACTTCGAACTTGAGTCGATGAAGCACTATAAGTGTCGTACTGT
1 TACTTCGAACTTGAGTCGATGAAGCACTATAAGTGTCGTACTGT
* **
94777109 TACTTCG-ACTTTGAGTCGATGAGGCACTATTTGTGTCGTA
1 TACTTCGAAC-TTGAGTCGATGAAGCACTATAAGTGTCGTA
94777149 GTGCTATTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (44 bp):
TACTTCGAACTTGAGTCGATGAAGCACTATAAGTGTCGTACTGT
Found at i:94786269 original size:15 final size:15
Alignment explanation
Indices: 94786249--94786279 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
94786239 CCAACCTTCA
94786249 AATTTTACCTCAATT
1 AATTTTACCTCAATT
94786264 AATTTTACCTCAATT
1 AATTTTACCTCAATT
94786279 A
1 A
94786280 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:94788474 original size:11 final size:11
Alignment explanation
Indices: 94788458--94788484 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
94788448 TAGAAATTAG
94788458 TTTGTGAAACT
1 TTTGTGAAACT
94788469 TTTGTGAAACT
1 TTTGTGAAACT
94788480 TTTGT
1 TTTGT
94788485 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:94790019 original size:92 final size:92
Alignment explanation
Indices: 94789883--94790076 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 92
94789873 TTGATTTTAG
* *
94789883 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
94789947 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
94789974 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
94790039 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
94790067 CAAATTCATA
1 TAAATTCATA
94790077 AACTATAATC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 17 0.18
92 43 0.46
93 30 0.32
94 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:94790124 original size:48 final size:52
Alignment explanation
Indices: 94790054--94790152 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
94790044 AATAATTATT
94790054 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
94790102 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
94790153 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:94790134 original size:17 final size:17
Alignment explanation
Indices: 94790109--94790142 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
94790099 ATAATTTTAA
*
94790109 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
94790126 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
94790143 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:94790159 original size:17 final size:16
Alignment explanation
Indices: 94790114--94790161 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
94790104 TTTAAATTTT
94790114 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
94790131 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
94790145 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
94790162 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:94790233 original size:18 final size:17
Alignment explanation
Indices: 94790202--94790236 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
94790192 ATTATTAAGA
94790202 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
94790219 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
94790237 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:94790302 original size:129 final size:130
Alignment explanation
Indices: 94790149--94790382 Score: 425
Period size: 129 Copynumber: 1.8 Consensus size: 130
94790139 ATATTAGTTA
*
94790149 TAATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* *
94790214 TATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
*
94790279 TAATAATA-ATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
94790343 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
94790383 TAAATATGAT
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
129 93 0.93
130 7 0.07
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (130 bp):
TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
Found at i:94790359 original size:18 final size:17
Alignment explanation
Indices: 94790331--94790365 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
94790321 ATTATTAAGA
*
94790331 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
94790348 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
94790366 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:94790477 original size:144 final size:147
Alignment explanation
Indices: 94790319--94790590 Score: 478
Period size: 144 Copynumber: 1.9 Consensus size: 147
94790309 ATAAGAATAT
*
94790319 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
94790384 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
94790446 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
94790463 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
* *
94790528 AAATATGATTAAATTATTTATTTTTGATAATAAATAATTTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
94790591 CAATAATCAT
Statistics
Matches: 120, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
144 91 0.76
145 2 0.02
148 22 0.18
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:94790503 original size:18 final size:17
Alignment explanation
Indices: 94790475--94790509 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
94790465 ATTATTAAGA
*
94790475 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
94790492 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
94790510 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:94790720 original size:44 final size:45
Alignment explanation
Indices: 94790671--94790765 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
94790661 TTACACCTCT
* *
94790671 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
94790715 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
94790760 ATTACA
1 ATTACA
94790766 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:94790765 original size:16 final size:16
Alignment explanation
Indices: 94790746--94790797 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
94790736 GATTTGCTAT
* *
94790746 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
94790762 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
94790778 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
94790794 TACA
1 TACA
94790798 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:94792112 original size:126 final size:125
Alignment explanation
Indices: 94791895--94792123 Score: 370
Period size: 126 Copynumber: 1.8 Consensus size: 125
94791885 TGCTCAATTG
* * * * *
94791895 TTTTTAAAATAATGGCAATGTTTGGTATTTAAAGAATTCAAAGGATTGTGCTCTAACGTACTGGG
1 TTTTTAAAATAAAGACAATGTTCGGTATTTAAAGAATTCAAAGGATCGTGCCCTAACGTACTGGG
94791960 TTTCACTTTCTTTGTTTGTTTTGAATA-TCAGAATATCCCTTTACCGGTTCACTCTCAAAA
66 TTTCACTTTCTTTGTTTGTTTTGAATATTC-GAATATCCCTTTACCGGTTCACTCTCAAAA
94792020 TTTTTCAAAATAAAGACAATGTTCGGTATTTAAAGAATTCAAAGGATCGTGCCCTAACGTACTGG
1 TTTTT-AAAATAAAGACAATGTTCGGTATTTAAAGAATTCAAAGGATCGTGCCCTAACGTACTGG
**
94792085 GTTTCGTTTTCTTTGTTTGTTTTGAATATTCGAATATCC
65 GTTTCACTTTCTTTGTTTGTTTTGAATATTCGAATATCC
94792124 TCTCAAAGCT
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
125 5 0.05
126 88 0.93
127 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.41
Consensus pattern (125 bp):
TTTTTAAAATAAAGACAATGTTCGGTATTTAAAGAATTCAAAGGATCGTGCCCTAACGTACTGGG
TTTCACTTTCTTTGTTTGTTTTGAATATTCGAATATCCCTTTACCGGTTCACTCTCAAAA
Found at i:94803379 original size:44 final size:44
Alignment explanation
Indices: 94803320--94803581 Score: 184
Period size: 44 Copynumber: 6.0 Consensus size: 44
94803310 TTTCAGCAGC
*
94803320 CTTTAACTCCCTAAGCAATAGGGTAACAAGCTGAAAATTATA-G
1 CTTTAACTCCCTAAGCAATAGGGTAACAAGCTGAAAATTACAGG
* * * * * *
94803363 ATCTTATCTCTCTAAGCAATAGTGG-CAC-AGATTGAAAA-CAGCAGG
1 CT-TTAACTCCCTAAGCAATAG-GGTAACAAG-CTGAAAATTA-CAGG
* * * *
94803408 CTTTAACTCCCTAAACAAAAGGATAACAAGCT-AAAGATTGCAGG
1 CTTTAACTCCCTAAGCAATAGGGTAACAAGCTGAAA-ATTACAGG
94803452 CTTTAACTCCCTAAGCAATAGGGTAACAAGCTGAAAATTACA-G
1 CTTTAACTCCCTAAGCAATAGGGTAACAAGCTGAAAATTACAGG
* * * * * *
94803495 ATCTTATCTCCCTAAGCAATAGTGG-AGC-AGATCAAAGA-TACATG
1 CT-TTAACTCCCTAAGCAATAG-GGTAACAAGCTGAAA-ATTACAGG
* * * *
94803539 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAAATTTACAG
1 CTTTAACTCCCTAAGCAATAGGGTAACAAGCTGAAAA-TTACAG
94803582 ATCTGAGCTC
Statistics
Matches: 166, Mismatches: 35, Indels: 35
0.70 0.15 0.15
Matches are distributed among these distances:
42 3 0.02
43 41 0.25
44 111 0.67
45 11 0.07
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (44 bp):
CTTTAACTCCCTAAGCAATAGGGTAACAAGCTGAAAATTACAGG
Found at i:94803652 original size:85 final size:85
Alignment explanation
Indices: 94803454--94803838 Score: 476
Period size: 85 Copynumber: 4.5 Consensus size: 85
94803444 ATTGCAGGCT
* * * * * * * *
94803454 TTAACTCCCTAAGCAATAGGGTAACAAGCTGAAAA-TTACAGATCTTATCTC-CCTAAGCAATAG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAAATTTACAGATCTGAGCTCGCC-GAGCAGTGG
* *
94803517 TGGAGCAGATCAAAGA-TACATGCC
64 TGGAGCAGGTCGAAGACT-C--GCC
94803541 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGAGCTCGCCGAGCAGTGGTG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGAGCTCGCCGAGCAGTGGTG
94803606 GAGCAGGTCGAAGACTCGCC
66 GAGCAGGTCGAAGACTCGCC
* * * *
94803626 TTAACCCCCTAAGTAGTAGGGTAACAGGTTAAAGTTTACAGAGT-TGGGCTCGCCGAGCAGTGGT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGA-TCTGAGCTCGCCGAGCAGTGGT
* *
94803690 GGAGCAGGTCGAAGACTTGTC
65 GGAGCAGGTCGAAGACTCGCC
* * *
94803711 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTG-GCTCTCCGAGTAGTGATG
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGAGCTCGCCGAGCAGTGGTG
*
94803775 GAGCAGGTCGAAGACTCGCA
66 GAGCAGGTCGAAGACTCGCC
* *
94803795 TTAACCCCTTAAGCAGTACGGTAACAGGCTAAAA-TTACAGATCT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCT
94803839 TATCTTCGTT
Statistics
Matches: 266, Mismatches: 27, Indels: 14
0.87 0.09 0.05
Matches are distributed among these distances:
83 10 0.04
84 65 0.24
85 121 0.45
86 5 0.02
87 62 0.23
88 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (85 bp):
TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGAGCTCGCCGAGCAGTGGTG
GAGCAGGTCGAAGACTCGCC
Found at i:94807550 original size:54 final size:54
Alignment explanation
Indices: 94807487--94807719 Score: 225
Period size: 54 Copynumber: 4.1 Consensus size: 54
94807477 AGTATCATAT
* *
94807487 ATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAAAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
*
94807541 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
* * * * * * * * *
94807595 ATTATATATTTTAATTATAATAT-ATTTAATAATAATTATGTTAATTTATATTTTATAGTATCAT
1 ATTAT-GA-TTTGAGTA-AAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTT-TA-T-T-A-
94807659 A
54 A
*
94807660 TATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 -ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
94807715 ATTAT
1 ATTAT
94807720 ATATTTTAAT
Statistics
Matches: 142, Mismatches: 23, Indels: 28
0.74 0.12 0.15
Matches are distributed among these distances:
54 61 0.43
55 2 0.01
56 7 0.05
57 12 0.08
58 5 0.04
59 4 0.03
60 16 0.11
61 4 0.03
62 5 0.04
63 12 0.08
64 7 0.05
65 2 0.01
66 5 0.04
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (54 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
Found at i:94807576 original size:28 final size:27
Alignment explanation
Indices: 94807491--94807577 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
94807481 TCATATATTA
94807491 TGATTTGAGTAAATTCATATAAAAATAT
1 TGATTTGAGTAAATTCATAT-AAAATAT
* * * * *
94807519 TAATTATTA-AAAATT-TTATTAAAT-T
1 TGATT-TGAGTAAATTCATATAAAATAT
94807544 ATGATTTGAGTAAATTCATATAAGAATAT
1 -TGATTTGAGTAAATTCATATAA-AATAT
94807573 TGATT
1 TGATT
94807578 ATTAAGAATT
Statistics
Matches: 43, Mismatches: 10, Indels: 12
0.66 0.15 0.18
Matches are distributed among these distances:
25 3 0.07
26 13 0.30
27 7 0.16
28 17 0.40
29 3 0.07
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.44
Consensus pattern (27 bp):
TGATTTGAGTAAATTCATATAAAATAT
Found at i:94807624 original size:15 final size:15
Alignment explanation
Indices: 94807589--94807640 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
94807579 TTAAGAATTT
*
94807589 TATTAAATTAT-ATA
1 TATTTAATTATAATA
94807603 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
94807617 TATTTAATAATAAT-
1 TATTTAATTATAATA
94807631 TATGTTAATT
1 TAT-TTAATT
94807641 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:94807666 original size:120 final size:120
Alignment explanation
Indices: 94807541--94807756 Score: 432
Period size: 120 Copynumber: 1.8 Consensus size: 120
94807531 ATTTTATTAA
94807541 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
1 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
94807606 TAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATAT
66 TAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATAT
94807661 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
1 ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
94807726 TAATTATAATATATTTAATAATAATTATGTT
66 TAATTATAATATATTTAATAATAATTATGTT
94807757 TAAATATGAT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 96 1.00
ACGTcount: A:0.42, C:0.01, G:0.07, T:0.50
Consensus pattern (120 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTT
TAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATAT
Found at i:94807739 original size:16 final size:16
Alignment explanation
Indices: 94807718--94807759 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
94807708 TTATTAAATT
*
94807718 ATATATTTTAATTATA
1 ATATATTTTAATAATA
94807734 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
94807749 AT-TATGTTTAA
1 ATATAT-TTTAA
94807760 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:94807744 original size:15 final size:15
Alignment explanation
Indices: 94807709--94807750 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
94807699 TTAAGAATTT
*
94807709 TATTAAATTAT-ATA
1 TATTTAATTATAATA
94807723 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
94807737 TATTTAATAATAAT
1 TATTTAATTATAAT
94807751 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:94807968 original size:45 final size:41
Alignment explanation
Indices: 94807870--94807979 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 41
94807860 TTTTCCATTA
94807870 TGCTATTACACCTCTATTCCATT-C-AACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACAAACCAAACACAAGAT
* * ***
94807909 TACTATTACGCCTCTATTCCATTACATTTAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACA---AACCAAACACAAGA-T
*
94807954 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCCATTACA
94807980 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
39 21 0.37
40 1 0.02
44 11 0.19
45 24 0.42
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (41 bp):
TGCTATTACACCTCTATTCCATTACAAACCAAACACAAGAT
Found at i:94807981 original size:16 final size:16
Alignment explanation
Indices: 94807960--94808011 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
94807950 GATTTGCTAT
*
94807960 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
94807976 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
94807992 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
94808008 TACA
1 TACA
94808012 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:94808739 original size:188 final size:186
Alignment explanation
Indices: 94808435--94808779 Score: 611
Period size: 188 Copynumber: 1.8 Consensus size: 186
94808425 TTTCTTCCTC
* *
94808435 ATTTTAATTTATATAATTCATTATTTCTTTAAATTCATTTGGCATTCATTTTTTTATTTTTTATT
1 ATTTTAATTTAAATAACTCATTATTTCTTTAAATTCATTTGGCATTCATTTTTTTATTTTTTATT
*
94808500 TTTTTTATATACATACATTTTAAATTACTTTGATGAATTACGTTGTTGTTTTTTGTTTTTTTAAA
66 TTTTTTATATACATACATTTTAAATTACTTTGATGAATTACGTTGTTGTTTTTTATTTTTTTAAA
*
94808565 TTATAAGTT-TCTTTTTTAAATTTCTCTTATATAATATTATTTTAAAATTTTGTATG
131 TTATAAGTTGT-TTTTTTAAATTACTCTTATATAATATTATTTTAAAATTTTGTATG
*
94808621 ATTTTACATTTAAATAGCTCATTATTTCTTTAAATTCATTTGGCATTCATTTTTTTATTTTTTAT
1 ATTTTA-ATTTAAATAACTCATTATTTCTTTAAATTCATTTGGCATTCATTTTTTTATTTTTTA-
94808686 TTTTTTTTATATACATACATTTTAAATTACTTTGATGAATTACGTTGTTGTTTTTTATTTTTTTA
64 TTTTTTTTATATACATACATTTTAAATTACTTTGATGAATTACGTTGTTGTTTTTTATTTTTTTA
94808751 AATTATAAGTTGTTTTTTTAAATTACTCT
129 AATTATAAGTTGTTTTTTTAAATTACTCT
94808780 CAAAATTTTT
Statistics
Matches: 151, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
186 6 0.04
187 54 0.36
188 90 0.60
189 1 0.01
ACGTcount: A:0.27, C:0.07, G:0.06, T:0.60
Consensus pattern (186 bp):
ATTTTAATTTAAATAACTCATTATTTCTTTAAATTCATTTGGCATTCATTTTTTTATTTTTTATT
TTTTTTATATACATACATTTTAAATTACTTTGATGAATTACGTTGTTGTTTTTTATTTTTTTAAA
TTATAAGTTGTTTTTTTAAATTACTCTTATATAATATTATTTTAAAATTTTGTATG
Found at i:94827241 original size:21 final size:23
Alignment explanation
Indices: 94827214--94827278 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 23
94827204 CTGATCAGTG
94827214 TACGACACATAAAGTGCCT-AAA
1 TACGACACATAAAGTGCCTGAAA
** *
94827236 -ACGACACACGAGGTGCCTGAAA
1 TACGACACATAAAGTGCCTGAAA
*
94827258 TACAACACATAAAGTGCCTGA
1 TACGACACATAAAGTGCCTGA
94827279 TCAGTAAAGC
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
21 15 0.44
22 3 0.09
23 16 0.47
ACGTcount: A:0.42, C:0.25, G:0.18, T:0.15
Consensus pattern (23 bp):
TACGACACATAAAGTGCCTGAAA
Found at i:94829428 original size:17 final size:17
Alignment explanation
Indices: 94829408--94829440 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
94829398 TTAACTATTA
94829408 AATTAAATTAATTCATT
1 AATTAAATTAATTCATT
*
94829425 AATTAATTTAATTCAT
1 AATTAAATTAATTCAT
94829441 GTGACAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (17 bp):
AATTAAATTAATTCATT
Found at i:94832176 original size:21 final size:21
Alignment explanation
Indices: 94832152--94832216 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
94832142 AAGTCTAGCT
*
94832152 GAAGCACATAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
*
94832173 GAAGC-C-CGAAG-GCT-AACT
1 GAAGCACAC-AAGTGCTAAACG
94832191 GAAGCACACAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
94832212 GAAGC
1 GAAGC
94832217 CCGAAGGCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
18 8 0.22
19 7 0.19
20 8 0.22
21 13 0.36
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAGCACACAAGTGCTAAACG
Found at i:94832193 original size:39 final size:39
Alignment explanation
Indices: 94832138--94832234 Score: 167
Period size: 39 Copynumber: 2.5 Consensus size: 39
94832128 TGATCTGAAA
* * *
94832138 CCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACGGAAG
1 CCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGGAAG
94832177 CCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGGAAG
1 CCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGGAAG
94832216 CCCGAAGGCTAACTGAAGC
1 CCCGAAGGCTAACTGAAGC
94832235 TCATCAGAGC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.36, C:0.26, G:0.26, T:0.12
Consensus pattern (39 bp):
CCCGAAGGCTAACTGAAGCACACAAGTGCTAAACGGAAG
Found at i:94835607 original size:33 final size:30
Alignment explanation
Indices: 94835568--94835627 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
94835558 ATCTATATTA
* *
94835568 TAATAAT-AGTTATATATGTATTAATATTTT
1 TAATAATAATTTATAT-TATATTAATATTTT
*
94835598 TAATAATAATTTATATTATATTATTATTTT
1 TAATAATAATTTATATTATATTAATATTTT
94835628 ATGTATTAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (30 bp):
TAATAATAATTTATATTATATTAATATTTT
Found at i:94835814 original size:16 final size:17
Alignment explanation
Indices: 94835793--94835825 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
94835783 ATAATTATTG
94835793 TATTAAA-AATATTTTA
1 TATTAAATAATATTTTA
94835809 TATTAAATTAATATTTT
1 TATTAAA-TAATATTTT
94835826 TAAAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTAAATAATATTTTA
Found at i:94838489 original size:68 final size:68
Alignment explanation
Indices: 94838406--94838541 Score: 256
Period size: 68 Copynumber: 2.0 Consensus size: 68
94838396 GAGAATAAAA
94838406 ACATAAGCAAAATTTCTA-TCTATTTTTCAAGAGATCTAGGTCTCTCTCTAAACAAGTCCTAAAG
1 ACATAAGCAAAATTTCTACT-TATTTTTCAAGAGATCTAGGTCTCTCTCTAAACAAGTCCTAAAG
94838470 GTTT
65 GTTT
94838474 ACATAAGCAAAATTTCTACTTATTTTTCAAGAGATCTAGGTCTCTCTCTAAACAAGTCCTAAAGG
1 ACATAAGCAAAATTTCTACTTATTTTTCAAGAGATCTAGGTCTCTCTCTAAACAAGTCCTAAAGG
94838539 TTT
66 TTT
94838542 CAGTTTCCCT
Statistics
Matches: 67, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
68 66 0.99
69 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (68 bp):
ACATAAGCAAAATTTCTACTTATTTTTCAAGAGATCTAGGTCTCTCTCTAAACAAGTCCTAAAGG
TTT
Found at i:94839568 original size:16 final size:17
Alignment explanation
Indices: 94839542--94839573 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
94839532 AACTGAAATT
94839542 AAAAAAGGAAAAAGAAG
1 AAAAAAGGAAAAAGAAG
94839559 AAAAAA-GAAAAAGAA
1 AAAAAAGGAAAAAGAA
94839574 AATTTGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAAAAGGAAAAAGAAG
Found at i:94847167 original size:2 final size:2
Alignment explanation
Indices: 94847160--94847208 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
94847150 ATTTTGACCT
94847160 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
94847202 GA GA GA G
1 GA GA GA G
94847209 GGGGGGGGGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:94847504 original size:24 final size:24
Alignment explanation
Indices: 94847455--94847502 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
94847445 TTTAGTCTAG
* **
94847455 ATTTAATTATAATATTTTATTTAA
1 ATTTAATTATAATATTATATAAAA
94847479 ATTTAATTATAATA-TATATAAAA
1 ATTTAATTATAATATTATATAAAA
94847502 A
1 A
94847503 ATAAATTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
ATTTAATTATAATATTATATAAAA
Found at i:94848265 original size:3 final size:3
Alignment explanation
Indices: 94848257--94848285 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
94848247 TGTTCAACGG
94848257 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
94848286 ATTGAGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:94851897 original size:41 final size:42
Alignment explanation
Indices: 94851819--94851898 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 42
94851809 CGTTTGAAAT
* * * ** *
94851819 AAAACGCCGCAAAAAATTAAGCAATAGCGGCGTTTTTGGTCG
1 AAAACGCCACAAAAAACTAAACAATAGCAACGCTTTTGGTCG
94851861 AAAA-GCCACAAAAAACTAAACAATAGCAACGCTTTTGG
1 AAAACGCCACAAAAAACTAAACAATAGCAACGCTTTTGG
94851899 AAAAACGCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
41 28 0.88
42 4 0.12
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (42 bp):
AAAACGCCACAAAAAACTAAACAATAGCAACGCTTTTGGTCG
Found at i:94851909 original size:40 final size:41
Alignment explanation
Indices: 94851819--94851909 Score: 96
Period size: 41 Copynumber: 2.2 Consensus size: 41
94851809 CGTTTGAAAT
* * * ** * *
94851819 AAAACGCCGCAAAAAATTAAGCAATAGCGGCGTTTTTGGTCG
1 AAAACGCCACAAAAAACTAAACAATAGCAACGCTTTTGG-CA
94851861 AAAA-GCCACAAAAAACTAAACAATAGCAACGCTTTTGG-A
1 AAAACGCCACAAAAAACTAAACAATAGCAACGCTTTTGGCA
94851900 AAAACGCCAC
1 AAAACGCCAC
94851910 TATAGATCGA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
39 4 0.10
40 5 0.12
41 28 0.68
42 4 0.10
ACGTcount: A:0.44, C:0.22, G:0.18, T:0.16
Consensus pattern (41 bp):
AAAACGCCACAAAAAACTAAACAATAGCAACGCTTTTGGCA
Found at i:94852049 original size:79 final size:78
Alignment explanation
Indices: 94851890--94852111 Score: 318
Period size: 79 Copynumber: 2.8 Consensus size: 78
94851880 ACAATAGCAA
* * *
94851890 CGCTTTTGGAAAAACGCCACTATAGATCGAGGTTTTAGCGGTGCTTCTAGAAAAATGCGCTATTG
1 CGCTTTTAGAAAAACGCCACTATAGA--GAGGTTTTAGCGGTGCTTTTAGAAAAACGCGCTATTG
94851955 CTTAGTTTTTAGCGG
64 CTTAGTTTTTAGCGG
* *** *
94851970 CGCTTTTAGAAAAATGCCACTATAGAGAGGTTTTAGCGGCATTTTTCGAAAAACGCCGCTATTGC
1 CGCTTTTAGAAAAACGCCACTATAGAGAGGTTTTAGCGGTGCTTTTAGAAAAACG-CGCTATTGC
94852035 TTAGTTTTTAGCGG
65 TTAGTTTTTAGCGG
*
94852049 CGTTTTTAGAAAAACGCCACTATAGATAGAGGTTTTAGCGGTGCTTTTAGAAAAACGCGCTAT
1 CGCTTTTAGAAAAACGCCACTATAG--AGAGGTTTTAGCGGTGCTTTTAGAAAAACGCGCTAT
94852112 AGATCGGGGT
Statistics
Matches: 125, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
78 23 0.18
79 46 0.37
80 30 0.24
81 26 0.21
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (78 bp):
CGCTTTTAGAAAAACGCCACTATAGAGAGGTTTTAGCGGTGCTTTTAGAAAAACGCGCTATTGCT
TAGTTTTTAGCGG
Found at i:94852055 original size:40 final size:40
Alignment explanation
Indices: 94851890--94852149 Score: 229
Period size: 40 Copynumber: 6.5 Consensus size: 40
94851880 ACAATAGCAA
* * *
94851890 CGCTTTTGGAAAAACGCCACTATAGATCGAGGTTTTAGCGG
1 CGCTTTTAGAAAAACGCCGCTATAGCT-GAGGTTTTAGCGG
* * * * * *
94851931 TGCTTCTAGAAAAATG-CGCTATTGCTTAGTTTTTAGCGG
1 CGCTTTTAGAAAAACGCCGCTATAGCTGAGGTTTTAGCGG
* * *
94851970 CGCTTTTAGAAAAATGCCACTATAG-AGAGGTTTTAGCGG
1 CGCTTTTAGAAAAACGCCGCTATAGCTGAGGTTTTAGCGG
** * * * *
94852009 CATTTTTCGAAAAACGCCGCTATTGCTTAGTTTTTAGCGG
1 CGCTTTTAGAAAAACGCCGCTATAGCTGAGGTTTTAGCGG
* * *
94852049 CGTTTTTAGAAAAACGCCACTATAGATAGAGGTTTTAGCGG
1 CGCTTTTAGAAAAACGCCGCTATAGCT-GAGGTTTTAGCGG
* * * *
94852090 TGCTTTTAGAAAAACG-CGCTATAGATCGGGGTTTTAGCAG
1 CGCTTTTAGAAAAACGCCGCTATAGCT-GAGGTTTTAGCGG
* *
94852130 CACTTTTGGAAAAACGCCGC
1 CGCTTTTAGAAAAACGCCGC
94852150 AAAAAACATT
Statistics
Matches: 174, Mismatches: 41, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
39 55 0.32
40 79 0.45
41 40 0.23
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (40 bp):
CGCTTTTAGAAAAACGCCGCTATAGCTGAGGTTTTAGCGG
Found at i:94852616 original size:14 final size:14
Alignment explanation
Indices: 94852594--94852647 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
94852584 TTAATTATCA
94852594 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
* * *
94852608 TTATCGTTTAAGAT
1 TTATAGTTTAGGGT
* *
94852622 ATATTGTTTAGGGT
1 TTATAGTTTAGGGT
*
94852636 TTAAAGTTTAGG
1 TTATAGTTTAGG
94852648 AGTTAATTAG
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.26, C:0.02, G:0.24, T:0.48
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:94853175 original size:18 final size:18
Alignment explanation
Indices: 94853152--94853192 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
94853142 AAATGATAGC
94853152 AATTATATAGGTTGGTTA
1 AATTATATAGGTTGGTTA
* *
94853170 AATTATATATGTTTGTTA
1 AATTATATAGGTTGGTTA
*
94853188 GATTA
1 AATTA
94853193 GATTTTAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (18 bp):
AATTATATAGGTTGGTTA
Found at i:94853836 original size:6 final size:6
Alignment explanation
Indices: 94853827--94853862 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
94853817 CTATTCGCAT
94853827 TCCCAC TCCCAC TCCCAC TCCCAC TCCCAC TCCCAC
1 TCCCAC TCCCAC TCCCAC TCCCAC TCCCAC TCCCAC
94853863 ATACTCATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.67, G:0.00, T:0.17
Consensus pattern (6 bp):
TCCCAC
Found at i:94854957 original size:17 final size:17
Alignment explanation
Indices: 94854931--94854970 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
94854921 ATGCATATGA
94854931 TCTC-TATGTGACCAGT
1 TCTCATATGTGACCAGT
94854947 TCTCATATGTGACCAGT
1 TCTCATATGTGACCAGT
94854964 TCTCATA
1 TCTCATA
94854971 CTTTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (17 bp):
TCTCATATGTGACCAGT
Found at i:94858671 original size:192 final size:192
Alignment explanation
Indices: 94858344--94858743 Score: 791
Period size: 192 Copynumber: 2.1 Consensus size: 192
94858334 GGAATTTAAG
*
94858344 ATGTTGTGTCCTAACTTATTGGATATGACACTTTGTTTTCTTGAGGTAAGGATTTCTAAAAAAAT
1 ATGTTGTATCCTAACTTATTGGATATGACACTTTGTTTTCTTGAGGTAAGGATTTCTAAAAAAAT
94858409 AAAGGTAATATTTTATATTTCAAAATTTGGGAGGTTTTCATCTGACCCAAATAACCGAATATCCT
66 AAAGGTAATATTTTATATTTCAAAATTTGGGAGGTTTTCATCTGACCCAAATAACCGAATATCCT
94858474 TTTTAAACTTAAATGCATGAGTTTTAAAAATTAAAAGACAAACTTATTTTCGAGGGTTTGAA
131 TTTTAAACTTAAATGCATGAGTTTTAAAAATTAAAAGACAAACTTATTTTCGAGGGTTTGAA
94858536 ATGTTGTATCCTAACTTATTGGATATGACACTTTGTTTTCTTGAGGTAAGGATTTCTAAAAAAAT
1 ATGTTGTATCCTAACTTATTGGATATGACACTTTGTTTTCTTGAGGTAAGGATTTCTAAAAAAAT
94858601 AAAGGTAATATTTTATATTTCAAAATTTGGGAGGTTTTCATCTGACCCAAATAACCGAATATCCT
66 AAAGGTAATATTTTATATTTCAAAATTTGGGAGGTTTTCATCTGACCCAAATAACCGAATATCCT
94858666 TTTTAAACTTAAATGCATGAGTTTTAAAAATTAAAAGACAAACTTATTTTCGAGGGTTTGAA
131 TTTTAAACTTAAATGCATGAGTTTTAAAAATTAAAAGACAAACTTATTTTCGAGGGTTTGAA
94858728 ATGTTGTATCCTAACT
1 ATGTTGTATCCTAACT
94858744 CACTGGGTGT
Statistics
Matches: 207, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
192 207 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (192 bp):
ATGTTGTATCCTAACTTATTGGATATGACACTTTGTTTTCTTGAGGTAAGGATTTCTAAAAAAAT
AAAGGTAATATTTTATATTTCAAAATTTGGGAGGTTTTCATCTGACCCAAATAACCGAATATCCT
TTTTAAACTTAAATGCATGAGTTTTAAAAATTAAAAGACAAACTTATTTTCGAGGGTTTGAA
Found at i:94876439 original size:18 final size:19
Alignment explanation
Indices: 94876410--94876451 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
94876400 GGACTTTATT
*
94876410 TATTGAAAAATATTTTGTA
1 TATTGAAAAATATTTGGTA
94876429 TATTG-AAAATATTTGGTA
1 TATTGAAAAATATTTGGTA
94876447 TATTG
1 TATTG
94876452 TCAATGTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (19 bp):
TATTGAAAAATATTTGGTA
Found at i:94883530 original size:35 final size:35
Alignment explanation
Indices: 94883480--94883732 Score: 208
Period size: 35 Copynumber: 7.3 Consensus size: 35
94883470 TCCATGGCAA
*
94883480 AGTTATGACAC-TAGGTATGGTATTGTCCATACTG
1 AGTTATGAAACGTAGGTATGGTATTGTCCATACTG
* * * *
94883514 AGCTATGACATGTAGGTATGGTATT-TCCCATACCG
1 AGTTATGAAACGTAGGTATGGTATTGT-CCATACTG
* * ** *
94883549 AGTTGTGAAACATAGGTATGACATTGTCCATATTG
1 AGTTATGAAACGTAGGTATGGTATTGTCCATACTG
* * * *
94883584 AGTTATAAAACATAGGTATGGTATTATCCATACCG
1 AGTTATGAAACGTAGGTATGGTATTGTCCATACTG
* * * * * *
94883619 AGCTAT-AATACGCAGATATGGCATT-TCTTATACCG
1 AGTTATGAA-ACGTAGGTATGGTATTGTC-CATACTG
* * *
94883654 AGTTTTGAAACGTAGGCATGGTATTGTCCATATTG
1 AGTTATGAAACGTAGGTATGGTATTGTCCATACTG
* * **
94883689 AGCTATGAAACGTAGATATGGTATTAACCATACTG
1 AGTTATGAAACGTAGGTATGGTATTGTCCATACTG
94883724 AGTTATGAA
1 AGTTATGAA
94883733 TTGTGGCACT
Statistics
Matches: 170, Mismatches: 42, Indels: 13
0.76 0.19 0.06
Matches are distributed among these distances:
34 14 0.08
35 151 0.89
36 5 0.03
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (35 bp):
AGTTATGAAACGTAGGTATGGTATTGTCCATACTG
Found at i:94883652 original size:105 final size:105
Alignment explanation
Indices: 94883491--94883721 Score: 282
Period size: 105 Copynumber: 2.2 Consensus size: 105
94883481 GTTATGACAC
* * * * * * *
94883491 TAGGTATGGTATTGTCCATACTGAGCTATGACATGTAGGTATGGTATTTCCCATACCGAGTTGTG
1 TAGGTATGGTATTATCCATACCGAGCTATAACACGCAGATATGGCATTTCCCATACCGAGTTGTG
* *
94883556 AAACATAGGTATGACATTGTCCATATTGAGTTATAAAACA
66 AAACATAGGCATGACATTGTCCATATTGAGCTATAAAACA
* ** *
94883596 TAGGTATGGTATTATCCATACCGAGCTATAATACGCAGATATGGCATTTCTTATACCGAGTTTTG
1 TAGGTATGGTATTATCCATACCGAGCTATAACACGCAGATATGGCATTTCCCATACCGAGTTGTG
* ** * *
94883661 AAACGTAGGCATGGTATTGTCCATATTGAGCTATGAAACG
66 AAACATAGGCATGACATTGTCCATATTGAGCTATAAAACA
* *
94883701 TAGATATGGTATTAACCATAC
1 TAGGTATGGTATTATCCATAC
94883722 TGAGTTATGA
Statistics
Matches: 106, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
105 106 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (105 bp):
TAGGTATGGTATTATCCATACCGAGCTATAACACGCAGATATGGCATTTCCCATACCGAGTTGTG
AAACATAGGCATGACATTGTCCATATTGAGCTATAAAACA
Found at i:94888397 original size:35 final size:35
Alignment explanation
Indices: 94888358--94888636 Score: 278
Period size: 35 Copynumber: 8.0 Consensus size: 35
94888348 ATGGCAAAGT
* * * *
94888358 TATGACACATAGGTATAGTATTGTCCATAGTGAGC
1 TATGAAACGTAGGTATGGTATTGTCCATACTGAGC
* * * *
94888393 TATGACACGTAGGTATAGTATTATCCATACCGAGC
1 TATGAAACGTAGGTATGGTATTGTCCATACTGAGC
* * *
94888428 TAT-AATACGTAGGTATGATATT-TCCCATATTGAGT
1 TATGAA-ACGTAGGTATGGTATTGT-CCATACTGAGC
* **
94888463 TGTGAAACGTAGGTATAATATTGTCCATACTGAGC
1 TATGAAACGTAGGTATGGTATTGTCCATACTGAGC
* * * *
94888498 TATGAAACATATGTATGGTATTATCCATACCGAGC
1 TATGAAACGTAGGTATGGTATTGTCCATACTGAGC
* ** *
94888533 TAT-AATACGTAGTTATGGTATT-TCTCATACCAAGT
1 TATGAA-ACGTAGGTATGGTATTGTC-CATACTGAGC
94888568 TATGAAACGTAGGTATGGTATTGTCCATACTGAGC
1 TATGAAACGTAGGTATGGTATTGTCCATACTGAGC
**
94888603 TATGAAACGTAGGTATGGTATTAACCATACTGAG
1 TATGAAACGTAGGTATGGTATTGTCCATACTGAG
94888637 TTGTGAATCG
Statistics
Matches: 204, Mismatches: 32, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
34 6 0.03
35 191 0.94
36 7 0.03
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (35 bp):
TATGAAACGTAGGTATGGTATTGTCCATACTGAGC
Found at i:94888555 original size:105 final size:105
Alignment explanation
Indices: 94888354--94888632 Score: 405
Period size: 105 Copynumber: 2.7 Consensus size: 105
94888344 ATCCATGGCA
* * * * *
94888354 AAGTTATGACACATAGGTATAGTATTGTCCATAGTGAGCTATGACACGTAGGTATAGTATTATCC
1 AAGTTATGAAACGTAGGTATAGTATTGTCCATACTGAGCTATGAAACGTAGGTATGGTATTATCC
**
94888419 ATACCGAGCTATAATACGTAGGTATGATATTTCCCATATT
66 ATACCGAGCTATAATACGTAGGTATGATATTTCCCATACC
* * * * *
94888459 GAGTTGTGAAACGTAGGTATAATATTGTCCATACTGAGCTATGAAACATATGTATGGTATTATCC
1 AAGTTATGAAACGTAGGTATAGTATTGTCCATACTGAGCTATGAAACGTAGGTATGGTATTATCC
* * *
94888524 ATACCGAGCTATAATACGTAGTTATGGTATTTCTCATACC
66 ATACCGAGCTATAATACGTAGGTATGATATTTCCCATACC
* *
94888564 AAGTTATGAAACGTAGGTATGGTATTGTCCATACTGAGCTATGAAACGTAGGTATGGTATTAACC
1 AAGTTATGAAACGTAGGTATAGTATTGTCCATACTGAGCTATGAAACGTAGGTATGGTATTATCC
94888629 ATAC
66 ATAC
94888633 TGAGTTGTGA
Statistics
Matches: 152, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
105 152 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (105 bp):
AAGTTATGAAACGTAGGTATAGTATTGTCCATACTGAGCTATGAAACGTAGGTATGGTATTATCC
ATACCGAGCTATAATACGTAGGTATGATATTTCCCATACC
Found at i:94889554 original size:46 final size:46
Alignment explanation
Indices: 94889329--94889556 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
94889319 TTATCTTTGA
* * * * *
94889329 CATGATGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
* * *
94889375 CATGTTGCCATGGAATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
94889421 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
94889467 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
*
94889513 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
94889557 TTCAGAGAGC
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 162 0.98
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:94896800 original size:21 final size:22
Alignment explanation
Indices: 94896761--94896801 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
94896751 CCGAATTGGT
94896761 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
94896783 CACACGGGTGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
94896802 GTGTCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:94897389 original size:30 final size:30
Alignment explanation
Indices: 94897322--94897391 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 30
94897312 TTTAATAGTC
*
94897322 TATAATTTT-ATAATTTTTAAAGGATTAAA
1 TATAATTTTAATAATTTTTAAAGGACTAAA
* *
94897351 TCAAAATTTTAAT-ATTTTTAAAGGGCTAAA
1 T-ATAATTTTAATAATTTTTAAAGGACTAAA
94897381 GTATAATTTTA
1 -TATAATTTTA
94897392 CTTTTACTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
29 1 0.03
30 30 0.88
31 3 0.09
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.46
Consensus pattern (30 bp):
TATAATTTTAATAATTTTTAAAGGACTAAA
Found at i:94898606 original size:2 final size:2
Alignment explanation
Indices: 94898599--94898627 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
94898589 ATCGTAATTT
94898599 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
94898628 TTCAATGTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.