Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 298 of 325
Found at i:94906327 original size:3 final size:3
Alignment explanation
Indices: 94906319--94906363 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
94906309 ATTTCATCGC
*
94906319 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT ATT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
94906364 TTTATATCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:94906368 original size:12 final size:12
Alignment explanation
Indices: 94906320--94906373 Score: 72
Period size: 12 Copynumber: 4.4 Consensus size: 12
94906310 TTTCATCGCC
*
94906320 TTCTTCTTCTTC
1 TTCTTCTTCTTA
*
94906332 TTCTTCTTCTTC
1 TTCTTCTTCTTA
94906344 TTCTTCTTCTTA
1 TTCTTCTTCTTA
*
94906356 TTCTTCTTTTTA
1 TTCTTCTTCTTA
94906368 TATCTT
1 T-TCTT
94906374 TCTTTCCTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
12 35 0.90
13 4 0.10
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.69
Consensus pattern (12 bp):
TTCTTCTTCTTA
Found at i:94907062 original size:25 final size:25
Alignment explanation
Indices: 94907034--94907084 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
94907024 ATAATGGTAA
94907034 TTCATATTCTGATTTTTGTTTTCTT
1 TTCATATTCTGATTTTTGTTTTCTT
94907059 TTCATATTCTGATTTTTGTTTTCTT
1 TTCATATTCTGATTTTTGTTTTCTT
94907084 T
1 T
94907085 CTTGAATTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.12, C:0.12, G:0.08, T:0.69
Consensus pattern (25 bp):
TTCATATTCTGATTTTTGTTTTCTT
Found at i:94911757 original size:18 final size:18
Alignment explanation
Indices: 94911734--94911774 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
94911724 TTAACCAGAC
* *
94911734 TTTATTAGATGTTTATGT
1 TTTATTAGATATTTATAT
*
94911752 TTTATTAGCTATTTATAT
1 TTTATTAGATATTTATAT
94911770 TTTAT
1 TTTAT
94911775 ATAAAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.10, T:0.63
Consensus pattern (18 bp):
TTTATTAGATATTTATAT
Found at i:94916247 original size:27 final size:26
Alignment explanation
Indices: 94916199--94916357 Score: 194
Period size: 27 Copynumber: 5.9 Consensus size: 26
94916189 GTGAAGCTGC
* *
94916199 CAGATATTGTGAC-GAAGTCACCAGAAA
1 CAGATATTGTGGCAG-AGCCACCAG-AA
94916226 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
94916252 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAA
* *
94916279 CAGATAATCGTGGCATAGCCACCAGAA
1 CAGAT-ATTGTGGCAGAGCCACCAGAA
*
94916306 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAA
*
94916333 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
94916358 GACGCTTCCT
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
26 11 0.09
27 101 0.86
28 5 0.04
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:94916293 original size:54 final size:54
Alignment explanation
Indices: 94916217--94916357 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
94916207 GTGACGAAGT
* *
94916217 CACCAGAAACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAG-ATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
94916271 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
94916325 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
94916358 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 76 0.93
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:94918010 original size:26 final size:26
Alignment explanation
Indices: 94917979--94918085 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
94917969 TGAAATGTCC
*
94917979 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
94918005 ATCATGGAACATTTACCTAACCCA-T
1 ATCATGGAACATTTACCTAACCCATT
* *
94918030 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
94918056 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
94918082 ATCA
1 ATCA
94918086 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 23 0.31
26 52 0.69
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:94918055 original size:51 final size:52
Alignment explanation
Indices: 94917979--94918085 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
94917969 TGAAATGTCC
94917979 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCA-T
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* *
94918030 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
94918082 ATCA
1 ATCA
94918086 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 48 0.91
52 5 0.09
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:94919012 original size:15 final size:15
Alignment explanation
Indices: 94918991--94919027 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
94918981 AACTATTTTA
94918991 AGGTTTAGGGATTAT
1 AGGTTTAGGGATTAT
*
94919006 GGGTTTAGGGATTAT
1 AGGTTTAGGGATTAT
94919021 AGGTTTA
1 AGGTTTA
94919028 AAGGTTAGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.35, T:0.41
Consensus pattern (15 bp):
AGGTTTAGGGATTAT
Found at i:94919525 original size:21 final size:21
Alignment explanation
Indices: 94919501--94919574 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
94919491 GTAAATCTCT
*
94919501 AACCGTAAACCCTAAACTATA
1 AACCTTAAACCCTAAACTATA
*
94919522 AACCTTAAACCATAAA-TATTA
1 AACCTTAAACCCTAAACTA-TA
* * *
94919543 AACCTTGAATCCTAAACCATAA
1 AACCTTAAACCCTAAACTAT-A
*
94919565 AACCCTAAAC
1 AACCTTAAAC
94919575 TATAGATAGT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
20 2 0.05
21 30 0.73
22 9 0.22
ACGTcount: A:0.49, C:0.27, G:0.03, T:0.22
Consensus pattern (21 bp):
AACCTTAAACCCTAAACTATA
Found at i:94919717 original size:21 final size:21
Alignment explanation
Indices: 94919668--94919720 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
94919658 TATAAAACTT
* *
94919668 AAAACTATAAACCCTAAATCT
1 AAAACCATAAACCCTAAATCC
* *
94919689 TAATCCATAAACCCTAAATCC
1 AAAACCATAAACCCTAAATCC
94919710 AAAACCATAAA
1 AAAACCATAAA
94919721 ACCTTAAACT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.53, C:0.26, G:0.00, T:0.21
Consensus pattern (21 bp):
AAAACCATAAACCCTAAATCC
Found at i:94920082 original size:3 final size:3
Alignment explanation
Indices: 94920074--94920114 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
94920064 ATTAATAGTA
94920074 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
94920115 AAGAGAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:94920470 original size:74 final size:74
Alignment explanation
Indices: 94920368--94920513 Score: 172
Period size: 75 Copynumber: 1.9 Consensus size: 74
94920358 TTTTCACTAG
*
94920368 AAAACGCCACAAACATCTATTAATAGATTGCAAAACGA-CGTC-GTTATAACCTTGTTATTAGTG
1 AAAACGCCACAAACATCTA-TAAGAGATTGCAAAAC-ATCGTCAGTTATAACCTT-TTATTAGTG
94920431 GCACTTTTTAGA
63 GCACTTTTTAGA
* * * *
94920443 AAAATGCCACAAAACATCTA-AAGAGATTTCAAAACATCGTCATTTTATAGCCTTTTATTAGTGG
1 AAAACGCCAC-AAACATCTATAAGAGATTGCAAAACATCGTCA-GTTATAACCTTTTATTAGTGG
*
94920507 CGCTTTT
64 CACTTTT
94920514 ATAAACACCA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
73 1 0.02
74 17 0.28
75 25 0.41
76 18 0.30
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (74 bp):
AAAACGCCACAAACATCTATAAGAGATTGCAAAACATCGTCAGTTATAACCTTTTATTAGTGGCA
CTTTTTAGA
Found at i:94920503 original size:188 final size:189
Alignment explanation
Indices: 94920230--94920642 Score: 455
Period size: 188 Copynumber: 2.2 Consensus size: 189
94920220 TTTTGAAGCT
* **
94920230 TTGTTATTAGTGGCGCTTTTCAAAAAACGCCACAAAACATCTATTAAGAAAATGTAAAATGGCGT
1 TTGTTATTAGTGGCACTTTTCAAAAAACGCCACAAAACATCTA-TAAGAAAATGTAAAACAGCGT
* * * * * *
94920295 CGTTTACATCCTTGTTATTAGTGGCGCTTCTATAAACGCCGCAACAGGTGTGAATTATCGGCGTT
65 CGTTTACAGCCTTGTTATTAGTGGCGCTTCTATAAACACCACAAAAGGTGTGAAATACCGGCGTT
* * * * *
94920360 TTCACTAGAAAACGCCACAAACATCTATTAATAGATTG-CAAAAC-GACGTCG-TTATAACC
130 TTCACCAG-AAACACCACAAAAATCTATTAACAGATTGTAAAAACTG-CGTCGTTTATAACC
* * * * *
94920419 TTGTTATTAGTGGCACTTTTTAGAAAAATGCCACAAAACATCTA-AAG-AGATTTCAAAACATCG
1 TTGTTATTAGTGGCACTTTTCA-AAAAACGCCACAAAACATCTATAAGAAAATGT-AAAACAGCG
* * *
94920482 TCATTTTATAGCCTT-TTATTAGTGGCGCTTTTATAAACACCACAAAAGGTGTGAAATACCGGCG
64 TC-GTTTACAGCCTTGTTATTAGTGGCGCTTCTATAAACACCACAAAAGGTGTGAAATACCGGCG
* * *
94920546 TTTTCACCAGAAACACCACAAAAATCTATTACCAGATTGTAAAAACTGCGTCGTTTGTATCC
128 TTTTCACCAGAAACACCACAAAAATCTATTAACAGATTGTAAAAACTGCGTCGTTTATAACC
* * *
94920608 TTCTAATTAGTGGCAC-TTT-ATAAAAACACCACAAA
1 TTGTTATTAGTGGCACTTTTCA-AAAAACGCCACAAA
94920643 TATTTATTAA
Statistics
Matches: 188, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
187 42 0.22
188 76 0.40
189 50 0.27
190 20 0.11
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (189 bp):
TTGTTATTAGTGGCACTTTTCAAAAAACGCCACAAAACATCTATAAGAAAATGTAAAACAGCGTC
GTTTACAGCCTTGTTATTAGTGGCGCTTCTATAAACACCACAAAAGGTGTGAAATACCGGCGTTT
TCACCAGAAACACCACAAAAATCTATTAACAGATTGTAAAAACTGCGTCGTTTATAACC
Found at i:94922765 original size:24 final size:24
Alignment explanation
Indices: 94922738--94922784 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
94922728 ATTATTATTG
*
94922738 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
94922762 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCGTCCGTTTTATCA
94922785 TTTAAGTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:94923021 original size:15 final size:14
Alignment explanation
Indices: 94923003--94923131 Score: 68
Period size: 14 Copynumber: 9.9 Consensus size: 14
94922993 TCTTATTTTA
*
94923003 ATTAATATAATTTGG
1 ATTAATATTATTT-G
94923018 ATTAAT-TTATTT-
1 ATTAATATTATTTG
*
94923030 A--AATATTATTTA
1 ATTAATATTATTTG
*
94923042 ATTAATATAATTTAG
1 ATTAATATTATTT-G
94923057 ATTAAT-TTATTT-
1 ATTAATATTATTTG
*
94923069 A--AATATTATTTA
1 ATTAATATTATTTG
*
94923081 ATTAATATAATTTGG
1 ATTAATATTATTT-G
*
94923096 ATTGAT-TTATTT-
1 ATTAATATTATTTG
**
94923108 A--AATATTATTAA
1 ATTAATATTATTTG
94923120 ATTAATA-TATTT
1 ATTAATATTATTT
94923132 TTATAAATAT
Statistics
Matches: 89, Mismatches: 11, Indels: 30
0.68 0.08 0.23
Matches are distributed among these distances:
10 8 0.09
11 17 0.19
12 6 0.07
13 4 0.04
14 37 0.42
15 17 0.19
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (14 bp):
ATTAATATTATTTG
Found at i:94923031 original size:24 final size:24
Alignment explanation
Indices: 94922999--94923131 Score: 63
Period size: 24 Copynumber: 5.3 Consensus size: 24
94922989 TCAATCTTAT
* *
94922999 TTTAATTAATATAATTTGGATTAA
1 TTTATTTAATATAATTTGAATTAA
*
94923023 TTTATTTAAATATTATTT-AATTAA
1 TTTATTT-AATATAATTTGAATTAA
* * * *
94923047 TATAATTTAGATTAATTTATTTAAATATTA
1 T-TTATTTA-A-T-A-TAATTTGAAT-TAA
* * *
94923077 TTTAATTAATATAATTTGGATTGA
1 TTTATTTAATATAATTTGAATTAA
* *
94923101 TTTATTTAA-ATATTATTAAATTAA
1 TTTATTTAATATAAT-TTGAATTAA
*
94923125 TATATTT
1 TTTATTT
94923132 TTATAAATAT
Statistics
Matches: 83, Mismatches: 17, Indels: 18
0.70 0.14 0.15
Matches are distributed among these distances:
23 4 0.05
24 35 0.42
25 22 0.27
26 2 0.02
27 2 0.02
28 7 0.08
29 8 0.10
30 3 0.04
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (24 bp):
TTTATTTAATATAATTTGAATTAA
Found at i:94923043 original size:39 final size:39
Alignment explanation
Indices: 94922999--94923128 Score: 233
Period size: 39 Copynumber: 3.3 Consensus size: 39
94922989 TCAATCTTAT
94922999 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
94923038 TTTAATTAATATAATTTAGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
94923077 TTTAATTAATATAATTTGGATTGATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
94923116 TTAAATTAATATA
1 TTTAATTAATATA
94923129 TTTTTATAAA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 87 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
Found at i:94923147 original size:78 final size:78
Alignment explanation
Indices: 94922999--94923150 Score: 234
Period size: 78 Copynumber: 1.9 Consensus size: 78
94922989 TCAATCTTAT
* *
94922999 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTATTTAATTAATATAATTTAGATTAATT
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTATTAAATTAATATAATTTAGATAAATT
*
94923064 TATTTAAATATTA
66 AATTTAAATATTA
* **
94923077 TTTAATTAATATAATTTGGATTGATTTATTTAAATATTATTAAATTAATAT-ATTTTTATAAATA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTATTAAATTAATATAATTTAGATAAAT-
94923141 TAATTTAAAT
65 TAATTTAAAT
94923151 TAAAATAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
77 9 0.13
78 58 0.87
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (78 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAAATATTATTAAATTAATATAATTTAGATAAATT
AATTTAAATATTA
Found at i:94923162 original size:29 final size:28
Alignment explanation
Indices: 94923107--94923162 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
94923097 TTGATTTATT
* * *
94923107 TAAATATTATTAAATTAATATATTTTTA
1 TAAATATAATTAAATTAAAATAATTTTA
94923135 TAAATATAATTTAAATTAAAATAATTTT
1 TAAATATAA-TTAAATTAAAATAATTTT
94923163 TTTCCATGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (28 bp):
TAAATATAATTAAATTAAAATAATTTTA
Found at i:94923442 original size:9 final size:9
Alignment explanation
Indices: 94923425--94923457 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
94923415 TATATACTTG
94923425 AACTTACAT
1 AACTTACAT
*
94923434 AACTCACAT
1 AACTTACAT
94923443 AACTTACAT
1 AACTTACAT
94923452 AACTTA
1 AACTTA
94923458 ATTATACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (9 bp):
AACTTACAT
Found at i:94924977 original size:13 final size:14
Alignment explanation
Indices: 94924961--94924989 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
94924951 TTATAAATAT
94924961 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
94924974 TTATAATGGTTTAA
1 TTATAATGGTTTAA
94924988 TT
1 TT
94924990 TGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:94925429 original size:21 final size:21
Alignment explanation
Indices: 94925401--94925463 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
94925391 TAGAGCGGAT
94925401 GCAGCAGCGAGGGAGGCAGCA-
1 GCAGCAGCGAGGGAGGCAG-AG
** *
94925422 TTAGCAGCGAGAGAGGCAGAG
1 GCAGCAGCGAGGGAGGCAGAG
94925443 GCAGCAGCGAGGGAGGCAGAG
1 GCAGCAGCGAGGGAGGCAGAG
94925464 CAAAGCAGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 1 0.03
21 34 0.97
ACGTcount: A:0.30, C:0.19, G:0.48, T:0.03
Consensus pattern (21 bp):
GCAGCAGCGAGGGAGGCAGAG
Found at i:94925747 original size:31 final size:31
Alignment explanation
Indices: 94925705--94925770 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
94925695 TTTAATTTTT
* *
94925705 ATGCTACATTTGCTGTTTTTGGTTGGATTTC
1 ATGCTACATTTGCTGTTATTGGTTGGATTTA
*
94925736 ATGCTATATTTGCTGTTATTGGTTGGATTTA
1 ATGCTACATTTGCTGTTATTGGTTGGATTTA
94925767 ATGC
1 ATGC
94925771 AGGAAGGGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.17, C:0.11, G:0.23, T:0.50
Consensus pattern (31 bp):
ATGCTACATTTGCTGTTATTGGTTGGATTTA
Found at i:94925907 original size:43 final size:43
Alignment explanation
Indices: 94925846--94926128 Score: 359
Period size: 43 Copynumber: 6.6 Consensus size: 43
94925836 AAAAAGCGCT
* * *
94925846 GCTAAAAGCCATGACTTTTAGCGGTGCCTCTACCACAAACGCC
1 GCTAAAGGCCATGACTTTTAGCGGCGCCTCTCCCACAAACGCC
*
94925889 GCTAAAAGCCATGACTTTTAGCGGCGCCTCTCCCACAAACGCC
1 GCTAAAGGCCATGACTTTTAGCGGCGCCTCTCCCACAAACGCC
** * *
94925932 GCTAAAATCCATGACTATTAGCGGCACCTCTCCCACAAACGCC
1 GCTAAAGGCCATGACTTTTAGCGGCGCCTCTCCCACAAACGCC
* * ** * *
94925975 GCTAAAGGCCACGCCTAGTAGCGGCGCTTCTCTCACAAACGCC
1 GCTAAAGGCCATGACTTTTAGCGGCGCCTCTCCCACAAACGCC
* ** *
94926018 GCTAAAGGCCATGACTATTAGCGGCGTTTCTCCCGCAAACGCC
1 GCTAAAGGCCATGACTTTTAGCGGCGCCTCTCCCACAAACGCC
* * * **
94926061 GCTAAAGGACATGACTTTTAGCAGCGCTTCTATCACAAACGCC
1 GCTAAAGGCCATGACTTTTAGCGGCGCCTCTCCCACAAACGCC
94926104 GCTAAAGGCCATGACTTTTAGCGGC
1 GCTAAAGGCCATGACTTTTAGCGGC
94926129 ATTTTTTTAA
Statistics
Matches: 212, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 212 1.00
ACGTcount: A:0.27, C:0.33, G:0.20, T:0.20
Consensus pattern (43 bp):
GCTAAAGGCCATGACTTTTAGCGGCGCCTCTCCCACAAACGCC
Found at i:94926334 original size:18 final size:17
Alignment explanation
Indices: 94926311--94926351 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
94926301 GAAGGCTGTT
94926311 TCGATTCTACTATGAAAA
1 TCGATTCTACTAT-AAAA
94926329 TCGATTCTACTATAAAA
1 TCGATTCTACTATAAAA
*
94926346 TAGATT
1 TCGATT
94926352 TAAAGAGGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.37
Consensus pattern (17 bp):
TCGATTCTACTATAAAA
Found at i:94927836 original size:18 final size:18
Alignment explanation
Indices: 94927810--94927846 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
94927800 CCAGACTTTG
94927810 TTAGATATTTATATTTTA
1 TTAGATATTTATATTTTA
*
94927828 TTAGCTATTTATATTTTA
1 TTAGATATTTATATTTTA
94927846 T
1 T
94927847 ATAAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (18 bp):
TTAGATATTTATATTTTA
Found at i:94938884 original size:44 final size:44
Alignment explanation
Indices: 94938834--94938924 Score: 139
Period size: 44 Copynumber: 2.1 Consensus size: 44
94938824 GTATGTCAAA
* *
94938834 TAATATTAAAATAACCTATACTAATCAGAGTTTAAGT-AGGAAAC
1 TAATATTAAAATAACCTACACTAATAAGAGTTTAAGTGA-GAAAC
*
94938878 TAATATTAAAATAACTTACACTAATAAGAGTTTAAGTGAGAAAC
1 TAATATTAAAATAACCTACACTAATAAGAGTTTAAGTGAGAAAC
94938922 TAA
1 TAA
94938925 AAACAGAGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 42 0.98
45 1 0.02
ACGTcount: A:0.49, C:0.10, G:0.11, T:0.30
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATAAGAGTTTAAGTGAGAAAC
Found at i:94942029 original size:17 final size:18
Alignment explanation
Indices: 94941987--94942036 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
94941977 CTTTTGGTAA
94941987 CATATTATATATTGTATAGT
1 CATATTATAT-TT-TATAGT
*
94942007 TA-ATTATATTTTATA-T
1 CATATTATATTTTATAGT
94942023 CATATTAT-TTTTAT
1 CATATTATATTTTAT
94942037 GTCGCATGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 8 0.30
17 9 0.33
18 2 0.07
19 7 0.26
20 1 0.04
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (18 bp):
CATATTATATTTTATAGT
Found at i:94945376 original size:54 final size:54
Alignment explanation
Indices: 94945296--94945404 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
94945286 ACACGCCTAA
94945296 TATTATCAAAGAACAATACGCCCAAGCATTCATCCTGAGGTTAATCGAGGACAT
1 TATTATCAAAGAACAATACGCCCAAGCATTCATCCTGAGGTTAATCGAGGACAT
*
94945350 TATTATCAAAGAACAATACGCCCAAGCATTCATCCTGAGGTTAATTGAGGACAT
1 TATTATCAAAGAACAATACGCCCAAGCATTCATCCTGAGGTTAATCGAGGACAT
94945404 T
1 T
94945405 CTAATGCTAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (54 bp):
TATTATCAAAGAACAATACGCCCAAGCATTCATCCTGAGGTTAATCGAGGACAT
Found at i:94946372 original size:15 final size:15
Alignment explanation
Indices: 94946352--94946381 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
94946342 AAATATCTTA
94946352 TTAATTTTAATTAAT
1 TTAATTTTAATTAAT
*
94946367 TTAATTTTACTTAAT
1 TTAATTTTAATTAAT
94946382 CAAAATTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (15 bp):
TTAATTTTAATTAAT
Found at i:94950884 original size:61 final size:60
Alignment explanation
Indices: 94950804--94950923 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 60
94950794 AATTTAATTT
* * *
94950804 AATGTTTATCTATAGGATAAATATTATATT-AATTTAATAATAAATCTTATTAAAATAATAG
1 AATGTTTATCTATAGGATAAACATTAAATTAAATTTAATAATAAA--ATATTAAAATAATAG
* *
94950865 AATGTTTATCTTGTA-GATAAACATTAAATTAAATTTAATATTAAAATATTAAAATAATA
1 AATGTTTATC-TATAGGATAAACATTAAATTAAATTTAATAATAAAATATTAAAATAATA
94950924 TTATTTTTAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
60 13 0.25
61 23 0.44
62 16 0.31
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (60 bp):
AATGTTTATCTATAGGATAAACATTAAATTAAATTTAATAATAAAATATTAAAATAATAG
Found at i:94951635 original size:64 final size:64
Alignment explanation
Indices: 94951534--94951663 Score: 260
Period size: 64 Copynumber: 2.0 Consensus size: 64
94951524 TTCTTCTCAT
94951534 TCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCTCTATTGATTGCAATTATG
1 TCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCTCTATTGATTGCAATTATG
94951598 TCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCTCTATTGATTGCAATTATG
1 TCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCTCTATTGATTGCAATTATG
94951662 TC
1 TC
94951664 TTCTGATAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (64 bp):
TCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCTCTATTGATTGCAATTATG
Found at i:94952043 original size:64 final size:64
Alignment explanation
Indices: 94951942--94952071 Score: 251
Period size: 64 Copynumber: 2.0 Consensus size: 64
94951932 TTCTTCTCAT
94951942 TCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCTCTATTGATTGCAATTATG
1 TCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCTCTATTGATTGCAATTATG
*
94952006 TCATATGCAATTTGATCGAGCTTTTGTTGAGCTATATAATTAGGCTCTATTGATTGCAATTATG
1 TCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCTCTATTGATTGCAATTATG
94952070 TC
1 TC
94952072 TTCTGATAAT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (64 bp):
TCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCTCTATTGATTGCAATTATG
Found at i:94952269 original size:408 final size:408
Alignment explanation
Indices: 94951514--94952330 Score: 1598
Period size: 408 Copynumber: 2.0 Consensus size: 408
94951504 ATTCCCAAAA
94951514 TCGTAGAATTTTCTTCTCATTCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGC
1 TCGTAGAATTTTCTTCTCATTCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGC
94951579 TCTATTGATTGCAATTATGTCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCT
66 TCTATTGATTGCAATTATGTCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCT
94951644 CTATTGATTGCAATTATGTCTTCTGATAATTCGCAATTACTTAATCATGGAGTCAGTTCATAATA
131 CTATTGATTGCAATTATGTCTTCTGATAATTCGCAATTACTTAATCATGGAGTCAGTTCATAATA
*
94951709 AGTACCATCATTGTAATTATACTATTTACGAAAGTAATTTATCCATTGCTTTGTCCAATGACCTC
196 AGTACCATCATTGTAATTATACTATTTACAAAAGTAATTTATCCATTGCTTTGTCCAATGACCTC
*
94951774 GTCATGTGTGTGTTACCCTCATATGATATCATTAATTCCTTTGAGTTAAATCTGTCCACTAAATA
261 GTCATGTATGTGTTACCCTCATATGATATCATTAATTCCTTTGAGTTAAATCTGTCCACTAAATA
94951839 CAATCCTATTTTATCTTATTGTCACCATTGTGTCTTCTTAATGATTATTATGATCACTGTCAACA
326 CAATCCTATTTTATCTTATTGTCACCATTGTGTCTTCTTAATGATTATTATGATCACTGTCAACA
94951904 AATGTAACAGCCCGATTT
391 AATGTAACAGCCCGATTT
94951922 TCGTAGAATTTTCTTCTCATTCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGC
1 TCGTAGAATTTTCTTCTCATTCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGC
*
94951987 TCTATTGATTGCAATTATGTCATATGCAATTTGATCGAGCTTTTGTTGAGCTATATAATTAGGCT
66 TCTATTGATTGCAATTATGTCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCT
*
94952052 CTATTGATTGCAATTATGTCTTCTGATAATTCTCAATTACTTAATCATGGAGTCAGTTCATAATA
131 CTATTGATTGCAATTATGTCTTCTGATAATTCGCAATTACTTAATCATGGAGTCAGTTCATAATA
94952117 AGTACCATCATTGTAATTATACTATTTACAAAAGTAATTTATCCATTGCTTTGTCCAATGACCTC
196 AGTACCATCATTGTAATTATACTATTTACAAAAGTAATTTATCCATTGCTTTGTCCAATGACCTC
94952182 GTCATGTATGTGTTACCCTCATATGATATCATTAATTCCTTTGAGTTAAATCTGTCCACTAAATA
261 GTCATGTATGTGTTACCCTCATATGATATCATTAATTCCTTTGAGTTAAATCTGTCCACTAAATA
94952247 CAATCCTATTTTATCTTATTGTCACCATTGTGTCTTCTTAATGATTATTATGATCACTGTCAACA
326 CAATCCTATTTTATCTTATTGTCACCATTGTGTCTTCTTAATGATTATTATGATCACTGTCAACA
94952312 AATGTAACAGCCCGATTT
391 AATGTAACAGCCCGATTT
94952330 T
1 T
94952331 GGGCCTAGTA
Statistics
Matches: 405, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
408 405 1.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (408 bp):
TCGTAGAATTTTCTTCTCATTCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGC
TCTATTGATTGCAATTATGTCATATGCAATTCGATCGAGCTTTTGTTGAGCTATATAATTAGGCT
CTATTGATTGCAATTATGTCTTCTGATAATTCGCAATTACTTAATCATGGAGTCAGTTCATAATA
AGTACCATCATTGTAATTATACTATTTACAAAAGTAATTTATCCATTGCTTTGTCCAATGACCTC
GTCATGTATGTGTTACCCTCATATGATATCATTAATTCCTTTGAGTTAAATCTGTCCACTAAATA
CAATCCTATTTTATCTTATTGTCACCATTGTGTCTTCTTAATGATTATTATGATCACTGTCAACA
AATGTAACAGCCCGATTT
Found at i:94954779 original size:52 final size:52
Alignment explanation
Indices: 94954722--94954867 Score: 170
Period size: 52 Copynumber: 2.8 Consensus size: 52
94954712 GACGGAAAAG
* *
94954722 ATGTGATATGTGCTTCCGTATAAAACCATAGCTGGGATATGGAATCGGTACA
1 ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGAATCGGTACA
* * * ***
94954774 ATGTGAT-TCGT-ATTCTCGTATAAGACCATAGCTAGGCTATGGCATCGGTGTG
1 ATGTGATAT-GTGATTC-CGTATAAGACCATAGCTGGGATATGGAATCGGTACA
*
94954826 ATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATG
1 ATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGGATATG
94954868 ACATTGGTAT
Statistics
Matches: 78, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
51 4 0.05
52 45 0.58
53 24 0.31
54 5 0.06
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (52 bp):
ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGAATCGGTACA
Found at i:94962255 original size:53 final size:52
Alignment explanation
Indices: 94962106--94962265 Score: 182
Period size: 52 Copynumber: 3.1 Consensus size: 52
94962096 TGACGAAAAA
** *
94962106 GATGTGATA-TGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATTAGTAC
1 GATGTGATACTGTG-TTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
* * * *
94962158 AATGTGATTC-GTGTTCCCGTATAAGACTATAGCTGGGCTATGGCATCGGTGT
1 GATGTGATACTGTGTT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
* *
94962210 GATGTGATACTGTGATTCCATATAAGACCATAAG-TGGGATATGGCATCGGTAT
1 GATGTGATACTGTG-TTCCGTATAAGACCAT-AGCTGGGCTATGGCATCGGTAT
94962263 GAT
1 GAT
94962266 ATGTGATCCG
Statistics
Matches: 90, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
51 2 0.02
52 49 0.54
53 35 0.39
54 4 0.04
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (52 bp):
GATGTGATACTGTGTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
Found at i:94966203 original size:30 final size:30
Alignment explanation
Indices: 94966168--94966227 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
94966158 AATTTGAGTT
*
94966168 TAAAAATATTAAAGCAAAATTTCGAATTTA
1 TAAAAATATTAAAGAAAAATTTCGAATTTA
* *
94966198 TAAAAATATTAGAGAAAAATTTTGAATTTA
1 TAAAAATATTAAAGAAAAATTTCGAATTTA
94966228 GATGAAGTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.35
Consensus pattern (30 bp):
TAAAAATATTAAAGAAAAATTTCGAATTTA
Found at i:94970002 original size:47 final size:48
Alignment explanation
Indices: 94969933--94970054 Score: 149
Period size: 47 Copynumber: 2.5 Consensus size: 48
94969923 GGTATAATGC
* * *
94969933 CAATGCCATATCCCAGACATGGTCTTACACTGGCTCATC-CATC-AAGT
1 CAATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCAAATCGAAGT
* *
94969980 CAATGCCATGTCCCAGACATGGTCTTACATTGACTATCGAAATCGAGGT
1 CAATGCCATGTCCCAGACATGGTCTTACACTGACTATC-AAATCGAAGT
* *
94970029 CGACGCCATGTCCCAGACATGGTCTT
1 CAATGCCATGTCCCAGACATGGTCTT
94970055 GCTATAACAC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 3 0.05
47 32 0.49
48 3 0.05
49 27 0.42
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCGAAGT
Found at i:94971611 original size:68 final size:65
Alignment explanation
Indices: 94971405--94971626 Score: 220
Period size: 68 Copynumber: 3.4 Consensus size: 65
94971395 CATAATTTTG
* *
94971405 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTAACCTAGC--CGCTTTA-TCTCGT
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCAACCTAGCTAC-CTCTATTCTCGT
94971467 A
65 A
** * * * * * * *
94971468 GCTCTCTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTACATCTA-TCTC
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACCCATGCAACCTAGCTACCTCTATTCTC
94971532 GTA
63 GTA
*
94971535 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTC-T-AT-TCT
94971599 CGTA
62 CGTA
*
94971603 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
94971627 TCCCGTATTA
Statistics
Matches: 127, Mismatches: 21, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
63 18 0.14
64 27 0.21
65 1 0.01
66 23 0.18
67 28 0.22
68 29 0.23
69 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCAACCTAGCTACCTCTATTCTCGTA
Found at i:94973366 original size:47 final size:44
Alignment explanation
Indices: 94973302--94973425 Score: 142
Period size: 47 Copynumber: 2.7 Consensus size: 44
94973292 CACGAGGCCA
* *
94973302 ATGCATGTCCCGGACATGTCTTACACTAGCTCTCGTCTCAATGT-TG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AATGTGTG
* *
94973348 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAGTGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGT-G-TG
94973396 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
94973426 ACACAAATAT
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
45 4 0.06
46 17 0.25
47 25 0.37
48 22 0.32
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGTG
Found at i:94973372 original size:94 final size:92
Alignment explanation
Indices: 94973255--94973425 Score: 211
Period size: 94 Copynumber: 1.8 Consensus size: 92
94973245 TCTCGTAGCC
* * * *
94973255 GATGCATGTCCCAGACATATCTTACACTGGCT-TACGTCA-CGAGGCCAATGCATGTCCCGGACA
1 GATGCATGTCCCAAACATATCTTACACTAGCTCT-CAT-AGCGAGGCCAATGCATGTCCCAGACA
94973318 TGTCTTACACTAGCTCTCGTCTCAATGTT
64 TGTCTTACACTAGCTCTCGTCTCAATGTT
* * * **
94973347 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAGTGTGGCTGATGCATGTCCCAGACA
1 GATG-CATGTCCCAAACAT-ATCTTACACTAGCTCTCATAGCGAGGCCAATGCATGTCCCAGACA
94973412 TGTCTTACACTAGC
64 TGTCTTACACTAGC
94973426 ACACAAATAT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
92 4 0.06
93 14 0.21
94 47 0.71
95 1 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAAACATATCTTACACTAGCTCTCATAGCGAGGCCAATGCATGTCCCAGACATG
TCTTACACTAGCTCTCGTCTCAATGTT
Found at i:94977345 original size:18 final size:17
Alignment explanation
Indices: 94977298--94977335 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
94977288 TTTTAAAAGG
*
94977298 AAAACAAATGAATCTTA
1 AAAACAAATGAAACTTA
94977315 AAAACAAATGAAACTTA
1 AAAACAAATGAAACTTA
94977332 AAAA
1 AAAA
94977336 ATTAATGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.66, C:0.11, G:0.05, T:0.18
Consensus pattern (17 bp):
AAAACAAATGAAACTTA
Found at i:94979325 original size:55 final size:55
Alignment explanation
Indices: 94979260--94979369 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
94979250 CACACATAAT
*
94979260 TTGCATATTACTCAATAATAACCACAAAGCATAATATTTTATGATATTAATCATC
1 TTGCATATTACTCAATAATAACCACAAAGCATAATATTTCATGATATTAATCATC
94979315 TTGCATATTACTCAATAATAACCACAAAGCATAATATTTCATGATATTAATCATC
1 TTGCATATTACTCAATAATAACCACAAAGCATAATATTTCATGATATTAATCATC
94979370 ATATCATATA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.35
Consensus pattern (55 bp):
TTGCATATTACTCAATAATAACCACAAAGCATAATATTTCATGATATTAATCATC
Found at i:94979346 original size:26 final size:26
Alignment explanation
Indices: 94979262--94979347 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
94979252 CACATAATTT
94979262 GCATATTACTCAATAATAACCACAAA
1 GCATATTACTCAATAATAACCACAAA
* * * * * **
94979288 GCATAATATTTTATGATATTAATCATC-TT
1 GCATATTA-CTCA--ATAATAACCA-CAAA
94979317 GCATATTACTCAATAATAACCACAAA
1 GCATATTACTCAATAATAACCACAAA
94979343 GCATA
1 GCATA
94979348 ATATTTCATG
Statistics
Matches: 41, Mismatches: 14, Indels: 10
0.63 0.22 0.15
Matches are distributed among these distances:
25 1 0.02
26 20 0.49
27 2 0.05
28 2 0.05
29 15 0.37
30 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (26 bp):
GCATATTACTCAATAATAACCACAAA
Found at i:94982125 original size:56 final size:55
Alignment explanation
Indices: 94982040--94982146 Score: 169
Period size: 56 Copynumber: 1.9 Consensus size: 55
94982030 TTATAAATTG
* *
94982040 CAAATTAATTATTCATGAGAACTATTCAAATTAAAAATGATTATTTATCATCTTA
1 CAAATTAATTATTCATAAGAACTATTCAAATTAAAAATGATGATTTATCATCTTA
* *
94982095 CAAATTTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCAT
1 CAAA-TTAATTATTCATAAGAACTATTCAAATTAAAAATGATGATTTATCAT
94982147 TCAATAGATA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
55 4 0.09
56 43 0.91
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (55 bp):
CAAATTAATTATTCATAAGAACTATTCAAATTAAAAATGATGATTTATCATCTTA
Found at i:94982897 original size:10 final size:10
Alignment explanation
Indices: 94982830--94982898 Score: 50
Period size: 11 Copynumber: 6.6 Consensus size: 10
94982820 ACATTAAACA
*
94982830 AAATAGTTAT
1 AAATAATTAT
94982840 AAATAATCTAT
1 AAATAAT-TAT
*
94982851 ATATAATATATT
1 AAATAAT-TA-T
* *
94982863 AAAAAATTTT
1 AAATAATTAT
*
94982873 AAA-AAATAT
1 AAATAATTAT
94982882 ATAATAATTAT
1 A-AATAATTAT
94982893 AAATAA
1 AAATAA
94982899 CAATTTAATT
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
9 5 0.11
10 17 0.37
11 18 0.39
12 6 0.13
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (10 bp):
AAATAATTAT
Found at i:94982951 original size:23 final size:21
Alignment explanation
Indices: 94982916--94982963 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
94982906 ATTGTTGATA
94982916 ATTTAAAATATATGTAATAGTTT
1 ATTTAAAATATAT-TAAT-GTTT
*
94982939 ATTT-AAATAATATTTATGTTT
1 ATTTAAAAT-ATATTAATGTTT
94982960 ATTT
1 ATTT
94982964 TCAATCTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 8 0.35
22 7 0.30
23 8 0.35
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (21 bp):
ATTTAAAATATATTAATGTTT
Found at i:94988218 original size:19 final size:19
Alignment explanation
Indices: 94988194--94988231 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
94988184 TGAAAAAATG
*
94988194 TTTGCTTGTATATAAATAA
1 TTTGCTTGTACATAAATAA
94988213 TTTGCTTGTACATAAATAA
1 TTTGCTTGTACATAAATAA
94988232 ATAAATGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTGCTTGTACATAAATAA
Found at i:94988251 original size:17 final size:17
Alignment explanation
Indices: 94988226--94988261 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
94988216 GCTTGTACAT
*
94988226 AAATAAATAAATGAATA
1 AAATAAATAAATAAATA
*
94988243 AAATGAATAAATAAATA
1 AAATAAATAAATAAATA
94988260 AA
1 AA
94988262 GACTCAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (17 bp):
AAATAAATAAATAAATA
Found at i:94988984 original size:25 final size:23
Alignment explanation
Indices: 94988929--94988984 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
94988919 TTTTGGCTAG
94988929 AGAAGAAAAGAAAGGAGAAAAGA
1 AGAAGAAAAGAAAGGAGAAAAGA
* * *
94988952 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGAAAGGAGAAAAGA
94988977 AGGAAGAA
1 A-GAAGAA
94988985 TTCGGCACTC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 2 0.08
24 4 0.15
25 19 0.73
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.34, T:0.02
Consensus pattern (23 bp):
AGAAGAAAAGAAAGGAGAAAAGA
Found at i:94989496 original size:3 final size:3
Alignment explanation
Indices: 94989488--94989513 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
94989478 AGACATAAAA
94989488 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
94989514 CATCCAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:94989747 original size:28 final size:28
Alignment explanation
Indices: 94989716--94989853 Score: 136
Period size: 28 Copynumber: 4.9 Consensus size: 28
94989706 TAATTATATG
** *
94989716 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* * *
94989744 TGGCACTTAGTGTGCGATA-CATCCAGAA
1 TGGCACTTAGTGTGCGA-AGTATCGAGGA
*
94989772 TGGCACTTAGTGTGCGAAGTAACGAGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
** * *
94989800 TGGCACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
*
94989828 CGGCACTTAGTGTGC-AAGGTATCGAG
1 TGGCACTTAGTGTGCGAA-GTATCGAG
94989854 TATGACATCT
Statistics
Matches: 88, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
27 3 0.03
28 84 0.95
29 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAGTATCGAGGA
Found at i:94989802 original size:56 final size:56
Alignment explanation
Indices: 94989716--94989877 Score: 211
Period size: 56 Copynumber: 2.9 Consensus size: 56
94989706 TAATTATATG
** *
94989716 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTATCGAGGATGGCACTTAGTGTGCGATACATCCAGAA
* *
94989772 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTATCGAGGATGGCACTTAGTGTGCGATACATCCAGAA
* * * *
94989828 CGGCACTTAGTGTGC-AAGGTATCGAGTATGACA-TCTAGTGTGTGATACAT
1 TGGCACTTAGTGTGCGAA-GTATCGAGGATGGCACT-TAGTGTGCGATACAT
94989878 TGAGTATTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 3 0.03
56 90 0.97
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAAGTATCGAGGATGGCACTTAGTGTGCGATACATCCAGAA
Found at i:94989956 original size:32 final size:32
Alignment explanation
Indices: 94989920--94989993 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
94989910 TGAGTATGAG
*
94989920 ATTGGTACGAGATGATACAGGTATCTACGGAA
1 ATTGGTACAAGATGATACAGGTATCTACGGAA
* * * *
94989952 ATTGGTACAATATGGTATAGGTATGTACGGAA
1 ATTGGTACAAGATGATACAGGTATCTACGGAA
*
94989984 ATTAGTACAA
1 ATTGGTACAA
94989994 TATAGTACAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.28
Consensus pattern (32 bp):
ATTGGTACAAGATGATACAGGTATCTACGGAA
Found at i:94989994 original size:32 final size:32
Alignment explanation
Indices: 94989935--94990018 Score: 114
Period size: 32 Copynumber: 2.6 Consensus size: 32
94989925 TACGAGATGA
* * *
94989935 TACAGGTATCTACGGAAATTGGTACAATATGG
1 TACAGGTATGTACGGAAATTAGTACAATATAG
*
94989967 TATAGGTATGTACGGAAATTAGTACAATATAG
1 TACAGGTATGTACGGAAATTAGTACAATATAG
* *
94989999 TACATGTATGTACGAAAATT
1 TACAGGTATGTACGGAAATT
94990019 CAATTGAGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (32 bp):
TACAGGTATGTACGGAAATTAGTACAATATAG
Found at i:94991365 original size:26 final size:26
Alignment explanation
Indices: 94991329--94991380 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
94991319 TTACAACTAC
94991329 CACTCTTTACTACAGTTTAGAGTTAT
1 CACTCTTTACTACAGTTTAGAGTTAT
94991355 CACTCTTTACTACAGTTTAGAGTTAT
1 CACTCTTTACTACAGTTTAGAGTTAT
94991381 TTTTGTAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.42
Consensus pattern (26 bp):
CACTCTTTACTACAGTTTAGAGTTAT
Found at i:94992638 original size:15 final size:15
Alignment explanation
Indices: 94992614--94992653 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
94992604 ATGCTTTCCA
94992614 TAACATGTATTCATT
1 TAACATGTATTCATT
*
94992629 TAATATGTATTCATT
1 TAACATGTATTCATT
94992644 TAACATGTAT
1 TAACATGTAT
94992654 AGACCATCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.47
Consensus pattern (15 bp):
TAACATGTATTCATT
Found at i:95000987 original size:14 final size:14
Alignment explanation
Indices: 95000968--95000996 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
95000958 GTTTCCCCTT
95000968 TCTTAATCAAACAA
1 TCTTAATCAAACAA
95000982 TCTTAATCAAACAA
1 TCTTAATCAAACAA
95000996 T
1 T
95000997 ATATAGTACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (14 bp):
TCTTAATCAAACAA
Found at i:95003176 original size:27 final size:27
Alignment explanation
Indices: 95003145--95003206 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
95003135 TAGTTTACCA
*
95003145 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAACTACCCCCGATTTACAG
*** * *
95003172 AATTACCGTTCTACCCTCGATTTATAG
1 AATTACCAAACTACCCCCGATTTACAG
95003199 AATTACCA
1 AATTACCA
95003207 TTTTACCTTC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAACTACCCCCGATTTACAG
Found at i:95003213 original size:27 final size:27
Alignment explanation
Indices: 95003156--95003247 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
95003146 ATTACCAAAG
* * *
95003156 TACCCCCGATTTACAGAATTACCGTTC
1 TACCCTCGATTTATAGAATTACCGTTT
*
95003183 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
95003210 TACCTTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
95003237 TACCCTTGATT
1 TACCCTCGATT
95003248 AACAAAATTA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:95003254 original size:27 final size:27
Alignment explanation
Indices: 95003163--95003258 Score: 104
Period size: 27 Copynumber: 3.6 Consensus size: 27
95003153 AAGTACCCCC
* * *
95003163 GATTTACAGAATTACCGTTCTACCCTC
1 GATTTACAAAATTACCGTTTTACCCTT
* * *
95003190 GATTTATAGAATTACCATTTTA-CCTT
1 GATTTACAAAATTACCGTTTTACCCTT
*
95003216 CGATTTATAAAATTACCGTTTTACCCTT
1 -GATTTACAAAATTACCGTTTTACCCTT
*
95003244 GATTAACAAAATTAC
1 GATTTACAAAATTAC
95003259 TAAAATACCC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.05
27 52 0.88
28 4 0.07
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (27 bp):
GATTTACAAAATTACCGTTTTACCCTT
Found at i:95003306 original size:28 final size:28
Alignment explanation
Indices: 95003251--95003351 Score: 134
Period size: 28 Copynumber: 3.6 Consensus size: 28
95003241 CTTGATTAAC
95003251 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGGTTTGT
95003278 AAAATTACTAAAATACCCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGGTTTGT
* * **
95003306 AAAATTACTGAAATACCCTC-GACTTGT
1 AAAATTACTAAAATACCCCCTGGTTTGT
*
95003333 AAAAATTACCAAAATACCC
1 -AAAATTACTAAAATACCC
95003352 TCGATTTATA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 20 0.30
28 46 0.70
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGGTTTGT
Found at i:95003352 original size:28 final size:28
Alignment explanation
Indices: 95003251--95003677 Score: 154
Period size: 27 Copynumber: 15.7 Consensus size: 28
95003241 CTTGATTAAC
*
95003251 AAAATTACTAAAATACCC-CTGGTTTGT
1 AAAATTACTAAAATACCCTCTGATTTGT
* *
95003278 AAAATTACTAAAATACCCCCTGGTTTGT
1 AAAATTACTAAAATACCCTCTGATTTGT
* *
95003306 AAAATTACTGAAATACCCTC-GACTTGT
1 AAAATTACTAAAATACCCTCTGATTTGT
* *
95003333 AAAAATTACCAAAATACCCTC-GATTTAT
1 -AAAATTACTAAAATACCCTCTGATTTGT
* **** **
95003361 AAAATCACTGTTTTACCCTC-GATTTAC
1 AAAATTACTAAAATACCCTCTGATTTGT
* * **** * **
95003388 AGAATTATTGTTTTACCCT-TAATTTAC
1 AAAATTACTAAAATACCCTCTGATTTGT
*****
95003415 AAAATTACCGTTTTACCCTC-GA-TTGT
1 AAAATTACTAAAATACCCTCTGATTTGT
* * * **
95003441 GAAATTATTGAAATACCC-CT-ATAGGGT
1 AAAATTACTAAAATACCCTCTGAT-TTGT
* * *
95003468 AGAATTACCAAAACACCC-CT-AGTTTGT
1 AAAATTACTAAAATACCCTCTGA-TTTGT
* * *
95003495 AAAATTACCAAAATA-CCACTGGTTTGT
1 AAAATTACTAAAATACCCTCTGATTTGT
* *
95003522 AAAATTACTGAAATACCCTC-AATTTGT
1 AAAATTACTAAAATACCCTCTGATTTGT
* **
95003549 AAAATTACCAAAATACCC-CTGATTTAC
1 AAAATTACTAAAATACCCTCTGATTTGT
* *
95003576 AAAGTTAC-AGAAATACCCT-TGACTTTCT
1 AAAATTACTA-AAATACCCTCTGA-TTTGT
* * * **
95003604 AAAAATTA-TGGAAATACCAT-TGGTTTAC
1 -AAAATTACT-AAAATACCCTCTGATTTGT
*
95003632 AAAATTACTAAAATACCCT-TAATTTGT
1 AAAATTACTAAAATACCCTCTGATTTGT
* * * *
95003659 AGATTTACCAAAACACCCT
1 AAAATTACTAAAATACCCT
95003678 TATAGGATGA
Statistics
Matches: 308, Mismatches: 73, Indels: 38
0.74 0.17 0.09
Matches are distributed among these distances:
25 2 0.01
26 18 0.06
27 211 0.69
28 61 0.20
29 16 0.05
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (28 bp):
AAAATTACTAAAATACCCTCTGATTTGT
Found at i:95003589 original size:54 final size:54
Alignment explanation
Indices: 95003490--95003671 Score: 186
Period size: 54 Copynumber: 3.3 Consensus size: 54
95003480 ACACCCCTAG
** *
95003490 TTTGTAAAATTACCAAAATACCACTGGTTTGTAAAATTACTGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACAGAAATACCCTCAA
* * * * *
95003544 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGAC
1 TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACAGAAATACCC-TCAA
* *** * *
95003599 TTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTA-AAATACCCTTAA
1 TTTGT-AAAATTACCAAAATACCACTGGTTTACAAAATTAC-AGAAATACCCTCAA
* *
95003654 TTTGTAGATTTACCAAAA
1 TTTGTAAAATTACCAAAA
95003672 CACCCTTATA
Statistics
Matches: 101, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
54 52 0.51
55 12 0.12
56 36 0.36
57 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACAGAAATACCCTCAA
Found at i:95003801 original size:27 final size:27
Alignment explanation
Indices: 95003701--95003796 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
95003691 GACTAAAATA
*
95003701 CCCCTATAGGGTAAAGAGACCGTAAAG
1 CCCCTGTAGGGTAAAGAGACCGTAAAG
95003728 CCCCTGTAGGGTAAAGAGACCGTAAAG
1 CCCCTGTAGGGTAAAGAGACCGTAAAG
* *
95003755 CCCCTGTAGGATAAAGTGACCGTAATA-
1 CCCCTGTAGGGTAAAGAGACCGTAA-AG
*
95003782 CCCCTGTATGGTAAA
1 CCCCTGTAGGGTAAA
95003797 ATGACGAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 62 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
CCCCTGTAGGGTAAAGAGACCGTAAAG
Found at i:95004533 original size:20 final size:20
Alignment explanation
Indices: 95004508--95004574 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
95004498 GATATGATAT
*
95004508 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
95004528 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
95004548 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
95004568 ACATGAT
1 ACATGAT
95004575 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:95004702 original size:52 final size:51
Alignment explanation
Indices: 95004624--95004754 Score: 205
Period size: 52 Copynumber: 2.6 Consensus size: 51
95004614 GAGGAAGTGC
* *
95004624 AAAAGGGCTTATGCCCCAGTTTATTGAAAATGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCAAGTTTACCG
95004676 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCAAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCAAGTTTACCG
*
95004727 AAAAGGGCTT-TTCCCCAG-TTATT-AAAAG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG
95004755 ATGCTAGGCC
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
48 5 0.07
49 5 0.07
50 7 0.09
51 24 0.32
52 35 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCAAGTTTACCG
Found at i:95004721 original size:25 final size:26
Alignment explanation
Indices: 95004624--95004754 Score: 171
Period size: 26 Copynumber: 5.2 Consensus size: 26
95004614 GAGGAAGTGC
95004624 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
95004650 AAAATGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
95004676 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
95004702 AAAAGGGCTT-TGCCCAAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
95004727 AAAAGGGCTT-TTCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
95004750 AAAAG
1 AAAAG
95004755 ATGCTAGGCC
Statistics
Matches: 92, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
23 5 0.05
24 3 0.03
25 28 0.30
26 56 0.61
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:95004951 original size:42 final size:42
Alignment explanation
Indices: 95004892--95004979 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
95004882 TAGTCTCCCC
* ** *
95004892 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
95004934 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
95004976 AAAT
1 AAAT
95004980 AAGCCTATGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:95005044 original size:31 final size:31
Alignment explanation
Indices: 95005009--95005081 Score: 128
Period size: 31 Copynumber: 2.4 Consensus size: 31
95004999 TTTACAGTAA
95005009 TTCGGCCCAGTGAAATGATTTATGAAAAGGC
1 TTCGGCCCAGTGAAATGATTTATGAAAAGGC
* *
95005040 TTCGGCCCAGTTATATGATTTATGAAAAGGC
1 TTCGGCCCAGTGAAATGATTTATGAAAAGGC
95005071 TTCGGCCCAGT
1 TTCGGCCCAGT
95005082 AACCGTTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (31 bp):
TTCGGCCCAGTGAAATGATTTATGAAAAGGC
Found at i:95013734 original size:25 final size:23
Alignment explanation
Indices: 95013679--95013734 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
95013669 AATTATAAAG
95013679 ATTTTTTA-AAAAATTATTTTCA
1 ATTTTTTAGAAAAATTATTTTCA
*
95013701 ATTTGTTAGAAAATATTTATTTT-A
1 ATTTTTTAGAAAA-A-TTATTTTCA
95013725 ATGTTTTTAG
1 AT-TTTTTAG
95013735 TGTTTTTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 7 0.25
23 4 0.14
24 4 0.14
25 13 0.46
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (23 bp):
ATTTTTTAGAAAAATTATTTTCA
Found at i:95014618 original size:22 final size:22
Alignment explanation
Indices: 95014590--95014632 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
95014580 CTAATAAATA
* *
95014590 ATTAAAATTTTATTTTATTTAT
1 ATTAAAAATTTATTGTATTTAT
95014612 ATTAAAAATTTATTGTATTTA
1 ATTAAAAATTTATTGTATTTA
95014633 AATATTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
ATTAAAAATTTATTGTATTTAT
Found at i:95014625 original size:17 final size:17
Alignment explanation
Indices: 95014603--95014641 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
95014593 AAAATTTTAT
95014603 TTTATT-TATATTAAAAA
1 TTTATTGTAT-TTAAAAA
*
95014620 TTTATTGTATTTAAATA
1 TTTATTGTATTTAAAAA
95014637 TTTAT
1 TTTAT
95014642 AATTAAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTATTGTATTTAAAAA
Found at i:95017243 original size:21 final size:21
Alignment explanation
Indices: 95017219--95017259 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
95017209 TTTTTTCCTG
95017219 TAAAAATTCAAGTTCTTCTCA
1 TAAAAATTCAAGTTCTTCTCA
* *
95017240 TAAAAGTTCAAGTTTTTCTC
1 TAAAAATTCAAGTTCTTCTC
95017260 TTGGGAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.41
Consensus pattern (21 bp):
TAAAAATTCAAGTTCTTCTCA
Found at i:95018141 original size:29 final size:29
Alignment explanation
Indices: 95018086--95018143 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
95018076 CATTCAATTA
*
95018086 ATTTTTAATTTTTACAAATTTTAAAAAAT
1 ATTTTTAATTATTACAAATTTTAAAAAAT
*
95018115 ATTTTTAATTATTA-AAATTATTTAAAAAT
1 ATTTTTAATTATTACAAATT-TTAAAAAAT
95018144 TATATTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (29 bp):
ATTTTTAATTATTACAAATTTTAAAAAAT
Found at i:95018160 original size:29 final size:29
Alignment explanation
Indices: 95018101--95018165 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
95018091 TAATTTTTAC
* *
95018101 AAAT-TTTAAAAAATATTTTTAATTATTAA
1 AAATATTTAAAAAATATTATTAATTA-GAA
* *
95018130 AATTATTTAAAAATTA-TATTAATTAGAA
1 AAATATTTAAAAAATATTATTAATTAGAA
95018158 AAATATTT
1 AAATATTT
95018166 TTTAACATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 9 0.30
29 11 0.37
30 10 0.33
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (29 bp):
AAATATTTAAAAAATATTATTAATTAGAA
Found at i:95025661 original size:20 final size:21
Alignment explanation
Indices: 95025612--95025662 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
95025602 TCTCCTCTTG
* * *
95025612 AATTATGTTATTTAAGTTTTT
1 AATTATATTATTTAAGATTTA
95025633 AATTATATTATTTAA-ATTTA
1 AATTATATTATTTAAGATTTA
*
95025653 AATTTTATTA
1 AATTATATTA
95025663 ATTATGAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (21 bp):
AATTATATTATTTAAGATTTA
Found at i:95035879 original size:20 final size:20
Alignment explanation
Indices: 95035838--95035879 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
95035828 TTTTAAAAAA
* *
95035838 TTAAAAACTATAAAAGTTAT
1 TTAAAAACTATAAAAATAAT
*
95035858 TTAAAAATTATAAAAATAAT
1 TTAAAAACTATAAAAATAAT
95035878 TT
1 TT
95035880 TTAGTATACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
TTAAAAACTATAAAAATAAT
Found at i:95040204 original size:122 final size:124
Alignment explanation
Indices: 95040078--95040329 Score: 373
Period size: 122 Copynumber: 2.0 Consensus size: 124
95040068 TGTAAAAAAA
*
95040078 TTAAATTACAAATGTGTAAATGTTGAAAGTTAAATTTTTTAAAATCAAAAATAAATTAACACCAT
1 TTAAATTACAAATGTGTAAATGTTGAAAGTTAAATTTTTTAAAATCAAAAATAAATTAACACAAT
* * * *
95040143 GTATAAA-TAGTGCTAAAGTTGCTATTATGCTAATTTTAAAAGTTACCATGTCA-ACAT
66 ATATAAATTAATGCTAAAGTTGCTATTATGCCAATTTTAAAAATTACCATGTCAGACAT
* * * *
95040200 TTAAATTACAAATGTGTAAATGTTGAAGGTTAGATTTTTTAAAATCAAGAATAATTTAACACAAT
1 TTAAATTACAAATGTGTAAATGTTGAAAGTTAAATTTTTTAAAATCAAAAATAAATTAACACAAT
* *
95040265 ATATAAATGTTAATGTTAAAGTTGCTATTATGCCAATTTTAAAAATTACCATGTCAGTCAT
66 ATATAAA--TTAATGCTAAAGTTGCTATTATGCCAATTTTAAAAATTACCATGTCAGACAT
95040326 TTAA
1 TTAA
95040330 TGGCGGGATG
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
122 66 0.57
125 42 0.37
126 7 0.06
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.37
Consensus pattern (124 bp):
TTAAATTACAAATGTGTAAATGTTGAAAGTTAAATTTTTTAAAATCAAAAATAAATTAACACAAT
ATATAAATTAATGCTAAAGTTGCTATTATGCCAATTTTAAAAATTACCATGTCAGACAT
Found at i:95048583 original size:3 final size:3
Alignment explanation
Indices: 95048575--95048603 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
95048565 AGTTTTCTTA
95048575 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
95048604 AGAGTTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:95049483 original size:16 final size:17
Alignment explanation
Indices: 95049446--95049483 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
95049436 AGAATTTTTT
95049446 TATTTTTAAAAAATTAA
1 TATTTTTAAAAAATTAA
*
95049463 TATTTTTAAAAATTTAA
1 TATTTTTAAAAAATTAA
95049480 -ATTT
1 TATTT
95049484 AATTATTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATTTTTAAAAAATTAA
Found at i:95049644 original size:22 final size:23
Alignment explanation
Indices: 95049614--95049667 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
95049604 ATTAATAATT
* **
95049614 AAATTAAAAAATTAAATTTTA-A
1 AAATAAAAAAATTAAATTCCACA
*
95049636 AAATAAAAAAATTAGATTCCACA
1 AAATAAAAAAATTAAATTCCACA
95049659 AAATAAAAA
1 AAATAAAAA
95049668 TAAAAGAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 17 0.63
23 10 0.37
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.26
Consensus pattern (23 bp):
AAATAAAAAAATTAAATTCCACA
Found at i:95057406 original size:47 final size:47
Alignment explanation
Indices: 95057337--95057432 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
95057327 CAAAACTTTG
95057337 AAGAGAAATATTCAATTTTGTATTTCAACCTTATCTCATCTGTGTAC
1 AAGAGAAATATTCAATTTTGTATTTCAACCTTATCTCATCTGTGTAC
95057384 AAGAGAAATATTCAATTTTGTATTTCAACCTTATCTCATCTGTGTAC
1 AAGAGAAATATTCAATTTTGTATTTCAACCTTATCTCATCTGTGTAC
95057431 AA
1 AA
95057433 TGACTTGATA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (47 bp):
AAGAGAAATATTCAATTTTGTATTTCAACCTTATCTCATCTGTGTAC
Found at i:95057588 original size:16 final size:16
Alignment explanation
Indices: 95057567--95057597 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95057557 TTTTAAATGT
95057567 TTTTAAAAATAATATA
1 TTTTAAAAATAATATA
*
95057583 TTTTAAAAATTATAT
1 TTTTAAAAATAATAT
95057598 TAATATTGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTTAAAAATAATATA
Found at i:95060443 original size:18 final size:18
Alignment explanation
Indices: 95060398--95060445 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
95060388 GATAACGAAA
*
95060398 AGGAAACTGAGAATGAAG
1 AGGAAACTGAAAATGAAG
* *
95060416 AGGGAGCTGAAAATGAAG
1 AGGAAACTGAAAATGAAG
*
95060434 AGGAACCTGAAA
1 AGGAAACTGAAA
95060446 CTGATGATGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.33, T:0.10
Consensus pattern (18 bp):
AGGAAACTGAAAATGAAG
Found at i:95064212 original size:10 final size:10
Alignment explanation
Indices: 95064199--95064225 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
95064189 AAAATAGTTA
95064199 AAAAAATAGC
1 AAAAAATAGC
95064209 AAAAAATAGC
1 AAAAAATAGC
95064219 AAAAAAT
1 AAAAAAT
95064226 TACAAGAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.74, C:0.07, G:0.07, T:0.11
Consensus pattern (10 bp):
AAAAAATAGC
Found at i:95067286 original size:20 final size:20
Alignment explanation
Indices: 95067263--95067301 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
95067253 AAATGGGTCA
*
95067263 TAGATATGTATGCTAGAAAT
1 TAGAAATGTATGCTAGAAAT
* *
95067283 TAGAAATTTATGTTAGAAA
1 TAGAAATGTATGCTAGAAA
95067302 ATGAAAGATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.36
Consensus pattern (20 bp):
TAGAAATGTATGCTAGAAAT
Found at i:95078833 original size:11 final size:11
Alignment explanation
Indices: 95078812--95078844 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
95078802 AAATATTTTT
95078812 CTATAAAAATTA
1 CTAT-AAAATTA
95078824 CTATAAAATTA
1 CTATAAAATTA
95078835 CTATAAAATT
1 CTATAAAATT
95078845 CTTTATAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (11 bp):
CTATAAAATTA
Found at i:95081193 original size:40 final size:40
Alignment explanation
Indices: 95081138--95081301 Score: 190
Period size: 40 Copynumber: 4.1 Consensus size: 40
95081128 TGAGCGTTAC
* *
95081138 CTACTGAAATGTATGCACTATTGAGCCATACCTACTAAAT
1 CTACTAAAATGTATGCACTATTGAGCCATACCTACTGAAT
*
95081178 CTACTAAAATGTATGCACTATTGAGCCATACCTACTGATT
1 CTACTAAAATGTATGCACTATTGAGCCATACCTACTGAAT
* * ** *
95081218 CTGCTGAAA-GTATGTTCTATCGAGCCATACCTA-TCGAAT
1 CTACTAAAATGTATGCACTATTGAGCCATACCTACT-GAAT
* * *
95081257 TTACTAAAATGTATGCGCT-TTCGAGCCATACCTACTGATT
1 CTACTAAAATGTATGCACTATT-GAGCCATACCTACTGAAT
95081297 CTACT
1 CTACT
95081302 GAAAGTTTCT
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
38 1 0.01
39 31 0.30
40 70 0.68
41 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.32
Consensus pattern (40 bp):
CTACTAAAATGTATGCACTATTGAGCCATACCTACTGAAT
Found at i:95081250 original size:79 final size:79
Alignment explanation
Indices: 95081138--95081307 Score: 236
Period size: 79 Copynumber: 2.1 Consensus size: 79
95081128 TGAGCGTTAC
*
95081138 CTACTGAAATGTATGCACTATTGAGCCATACCTA-CTAAATCTACTAAAATGTATGCACTATT-G
1 CTACTGAAA-GTATGCACTATCGAGCCATACCTATC-AAATCTACTAAAATGTATGCACT-TTCG
95081201 AGCCATACCTACTGATT
63 AGCCATACCTACTGATT
* ** * * *
95081218 CTGCTGAAAGTATGTTCTATCGAGCCATACCTATCGAATTTACTAAAATGTATGCGCTTTCGAGC
1 CTACTGAAAGTATGCACTATCGAGCCATACCTATCAAATCTACTAAAATGTATGCACTTTCGAGC
95081283 CATACCTACTGATT
66 CATACCTACTGATT
95081297 CTACTGAAAGT
1 CTACTGAAAGT
95081308 TTCTCAAACT
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 2 0.03
79 69 0.86
80 9 0.11
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (79 bp):
CTACTGAAAGTATGCACTATCGAGCCATACCTATCAAATCTACTAAAATGTATGCACTTTCGAGC
CATACCTACTGATT
Found at i:95083207 original size:27 final size:27
Alignment explanation
Indices: 95083172--95083294 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
95083162 ACATAGGGAT
* *
95083172 AAAACAGTCATCTTACCATAAAAGGGC
1 AAAACAGTCATTTTACCACAAAAGGGC
*
95083199 AAAATAGTCATTTTACCACAAAAGGGC
1 AAAACAGTCATTTTACCACAAAAGGGC
*
95083226 AAAACAGTCATTTTACC-CTATAAGGGC
1 AAAACAGTCATTTTACCAC-AAAAGGGC
* *
95083253 AAAACAGTCATTTTACCCCATAAGGGC
1 AAAACAGTCATTTTACCACAAAAGGGC
* *
95083280 GAAATAGTCATTTTA
1 AAAACAGTCATTTTA
95083295 TTAATTAGGG
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
26 1 0.01
27 85 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACAAAAGGGC
Found at i:95083291 original size:54 final size:54
Alignment explanation
Indices: 95083172--95083294 Score: 174
Period size: 54 Copynumber: 2.3 Consensus size: 54
95083162 ACATAGGGAT
* *
95083172 AAAACAGTCATCTTACCATAAAAGGGCAAAATAGTCATTTTACCACAAAAGGGC
1 AAAACAGTCATTTTACCATAAAAGGGCAAAACAGTCATTTTACCACAAAAGGGC
* * * *
95083226 AAAACAGTCATTTTACCCTATAAGGGCAAAACAGTCATTTTACCCCATAAGGGC
1 AAAACAGTCATTTTACCATAAAAGGGCAAAACAGTCATTTTACCACAAAAGGGC
* *
95083280 GAAATAGTCATTTTA
1 AAAACAGTCATTTTA
95083295 TTAATTAGGG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (54 bp):
AAAACAGTCATTTTACCATAAAAGGGCAAAACAGTCATTTTACCACAAAAGGGC
Found at i:95089107 original size:19 final size:19
Alignment explanation
Indices: 95089083--95089147 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
95089073 GTTTCAAAAA
*
95089083 TAATATTATTTTAATAGTT
1 TAATATTAATTTAATAGTT
95089102 TAATATTAATTTAA-A-TT
1 TAATATTAATTTAATAGTT
**
95089119 TAATACTTAGCTTAATAGTT
1 TAATA-TTAATTTAATAGTT
95089139 TAATATTAA
1 TAATATTAA
95089148 AATGATTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
17 7 0.18
18 8 0.21
19 17 0.44
20 7 0.18
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAATATTAATTTAATAGTT
Found at i:95089235 original size:12 final size:12
Alignment explanation
Indices: 95089218--95089242 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
95089208 TTTTAATAAG
95089218 ATTTAATATTAA
1 ATTTAATATTAA
95089230 ATTTAATATTAA
1 ATTTAATATTAA
95089242 A
1 A
95089243 GTGGTTAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:95091922 original size:20 final size:20
Alignment explanation
Indices: 95091899--95091972 Score: 55
Period size: 20 Copynumber: 3.8 Consensus size: 20
95091889 TATAATTATT
95091899 ATAAAAATATTTAAAAATTA
1 ATAAAAATATTTAAAAATTA
* * * *
95091919 AT--AAA-GTCTAATAATTT
1 ATAAAAATATTTAAAAATTA
* *
95091936 ATAAAAAAATTGAAAAATTA
1 ATAAAAATATTTAAAAATTA
*
95091956 ATAAAACTTATTTAAAA
1 ATAAAA-ATATTTAAAA
95091973 TATTTAAAAT
Statistics
Matches: 38, Mismatches: 12, Indels: 7
0.67 0.21 0.12
Matches are distributed among these distances:
17 10 0.26
18 3 0.08
19 3 0.08
20 15 0.39
21 7 0.18
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (20 bp):
ATAAAAATATTTAAAAATTA
Found at i:95091933 original size:39 final size:37
Alignment explanation
Indices: 95091873--95091961 Score: 110
Period size: 37 Copynumber: 2.4 Consensus size: 37
95091863 TAAAATTATA
* *
95091873 AAAAATT-ATAAAATACTATAATTATTATAAAAATATTT
1 AAAAATTAATAAAATACTATAA-T-TTATAAAAAAATTG
*
95091911 AAAAATTAATAAAGT-CTAATAATTTATAAAAAAATTG
1 AAAAATTAATAAAATACT-ATAATTTATAAAAAAATTG
95091948 AAAAATTAATAAAA
1 AAAAATTAATAAAA
95091962 CTTATTTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
37 25 0.56
38 10 0.22
39 10 0.22
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (37 bp):
AAAAATTAATAAAATACTATAATTTATAAAAAAATTG
Found at i:95091982 original size:37 final size:37
Alignment explanation
Indices: 95091941--95092011 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
95091931 AATTTATAAA
* *
95091941 AAAATTGAAAAATTAA-TAAAACTTATTTAAAATATTT
1 AAAATTAAAAAATGAATTAAAA-TTATTTAAAATATTT
95091978 AAAATTAAAAAATGAATTAAAATTATTTAAAATA
1 AAAATTAAAAAATGAATTAAAATTATTTAAAATA
95092012 ATAAAAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 26 0.84
38 5 0.16
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (37 bp):
AAAATTAAAAAATGAATTAAAATTATTTAAAATATTT
Found at i:95091989 original size:28 final size:29
Alignment explanation
Indices: 95091949--95092017 Score: 90
Period size: 28 Copynumber: 2.4 Consensus size: 29
95091939 AAAAAATTGA
* *
95091949 AAAATTAATAAAACTTATTTAAAA-TATTT
1 AAAATTAATAAAA-TGAATTAAAATTATTT
95091978 AAAATTAA-AAAATGAATTAAAATTATTT
1 AAAATTAATAAAATGAATTAAAATTATTT
95092006 AAAA-TAATAAAA
1 AAAATTAATAAAA
95092018 AGTTGAGCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
27 11 0.31
28 17 0.47
29 8 0.22
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (29 bp):
AAAATTAATAAAATGAATTAAAATTATTT
Found at i:95092345 original size:8 final size:9
Alignment explanation
Indices: 95092323--95092419 Score: 52
Period size: 10 Copynumber: 10.0 Consensus size: 9
95092313 CCAGTTCAAG
*
95092323 TTTTTATGAT
1 TTTTTAT-AA
95092333 TTTTTATAA
1 TTTTTATAA
95092342 TTTTTATAA
1 TTTTTATAA
* *
95092351 GTTTATATTAG
1 -TTTTTA-TAA
* *
95092362 TTTTAATAC
1 TTTTTATAA
95092371 TTTTT-TGATA
1 TTTTTAT-A-A
*
95092381 TTTTTATGA
1 TTTTTATAA
95092390 TTTTTATAGAA
1 TTTTTAT--AA
*
95092401 TTTTAATACA
1 TTTTTATA-A
95092411 TTTTTATAA
1 TTTTTATAA
95092420 AATTTTAAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
8 1 0.01
9 27 0.40
10 29 0.43
11 10 0.15
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:95092375 original size:39 final size:38
Alignment explanation
Indices: 95092332--95092419 Score: 99
Period size: 39 Copynumber: 2.3 Consensus size: 38
95092322 GTTTTTATGA
95092332 TTTTTTATAATTTTTATAAGTTTATATTAG-TTTTAATAC
1 TTTTTTATAATTTTTATAA-TTTATA-TAGATTTTAATAC
* *
95092371 TTTTTTGAT-ATTTTTATGATTTTTATAGAATTTTAATAC
1 TTTTTT-ATAATTTTTATAATTTATATAG-ATTTTAATAC
*
95092410 ATTTTTATAA
1 TTTTTTATAA
95092420 AATTTTAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
37 3 0.07
38 7 0.17
39 30 0.71
40 2 0.05
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (38 bp):
TTTTTTATAATTTTTATAATTTATATAGATTTTAATAC
Found at i:95092692 original size:28 final size:26
Alignment explanation
Indices: 95092658--95092732 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 26
95092648 ATTAAGAGAG
*
95092658 AAACTTACTTAATTATTTTAATTAACA
1 AAACTTAATTAATTATTTTAATTAA-A
*
95092685 AAGACTTAATTAATGTAAATTTAATTAAA
1 AA-ACTTAATTAAT-T-ATTTTAATTAAA
*
95092714 AAACTTAATTATTTATTTT
1 AAACTTAATTAATTATTTT
95092733 TATATTTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
26 4 0.10
27 3 0.07
28 20 0.49
29 4 0.10
30 10 0.24
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (26 bp):
AAACTTAATTAATTATTTTAATTAAA
Found at i:95093198 original size:24 final size:24
Alignment explanation
Indices: 95093157--95093226 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 24
95093147 TGATTATTAA
95093157 TATTTAAATTTAGT-TTTAATTTTT
1 TATTT-AATTTAGTATTTAATTTTT
*
95093181 TATTTAATTTAGTATTTAA-GTTT
1 TATTTAATTTAGTATTTAATTTTT
*
95093204 AATTTTAATGTT-GTATTTAATTT
1 TA-TTTAAT-TTAGTATTTAATTT
95093227 ATCCTAATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 12 0.31
24 24 0.62
25 3 0.08
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (24 bp):
TATTTAATTTAGTATTTAATTTTT
Found at i:95093210 original size:36 final size:36
Alignment explanation
Indices: 95093157--95093227 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
95093147 TGATTATTAA
* * *
95093157 TATTTAAATTTAGTTTTAATTTTTTATTTAATTTAG
1 TATTTAAATTTAATTTTAATGTTGTATTTAATTTAG
*
95093193 TATTTAAGTTTAATTTTAATGTTGTATTTAATTTA
1 TATTTAAATTTAATTTTAATGTTGTATTTAATTTA
95093228 TCCTAATTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (36 bp):
TATTTAAATTTAATTTTAATGTTGTATTTAATTTAG
Found at i:95099079 original size:15 final size:15
Alignment explanation
Indices: 95099059--95099088 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
95099049 ATGAAGCATT
95099059 ATCTTTATGCTCATC
1 ATCTTTATGCTCATC
95099074 ATCTTTATGCTCATC
1 ATCTTTATGCTCATC
95099089 GTTTGGAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.07, T:0.47
Consensus pattern (15 bp):
ATCTTTATGCTCATC
Found at i:95107263 original size:10 final size:10
Alignment explanation
Indices: 95107248--95107346 Score: 57
Period size: 9 Copynumber: 10.3 Consensus size: 10
95107238 TTTAAATTAG
95107248 AAATTATATA
1 AAATTATATA
95107258 AAATTAT-TAA
1 AAATTATAT-A
* *
95107268 AAATAATTTA
1 AAATTATATA
* *
95107278 AAACTCTA-A
1 AAATTATATA
* *
95107287 AAAGTAT-TG
1 AAATTATATA
95107296 AAATTATATAA
1 AAATTATAT-A
*
95107307 AAAGTAT-TA
1 AAATTATATA
* *
95107316 AAATGATAAA
1 AAATTATATA
95107326 AAATT-TATA
1 AAATTATATA
95107335 AAATT-TATA
1 AAATTATATA
95107344 AAA
1 AAA
95107347 AAGTAGTAAT
Statistics
Matches: 67, Mismatches: 16, Indels: 13
0.70 0.17 0.14
Matches are distributed among these distances:
9 34 0.51
10 26 0.39
11 7 0.10
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (10 bp):
AAATTATATA
Found at i:95107271 original size:20 final size:19
Alignment explanation
Indices: 95107243--95107339 Score: 63
Period size: 20 Copynumber: 5.0 Consensus size: 19
95107233 TGATTTTTAA
*
95107243 ATTAGAAATTATATAAAATT
1 ATTAAAAATTAT-TAAAATT
* *
95107263 ATTAAAAATAATTTAAAACT
1 ATTAAAAATTA-TTAAAATT
* * *
95107283 -CTAAAAAGTATTGAAATT
1 ATTAAAAATTATTAAAATT
* *
95107301 ATATAAAAAGTATTAAAATG
1 AT-TAAAAATTATTAAAATT
*
95107321 ATAAAAAATT-TATAAAATT
1 ATTAAAAATTAT-TAAAATT
95107340 TATAAAAAAG
Statistics
Matches: 59, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
18 7 0.12
19 19 0.32
20 32 0.54
21 1 0.02
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (19 bp):
ATTAAAAATTATTAAAATT
Found at i:95127039 original size:18 final size:19
Alignment explanation
Indices: 95126997--95127039 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
95126987 AAAAATATCT
* *
95126997 AAAAAATTATAAATGAGAA
1 AAAAAACTATAAATAAGAA
*
95127016 AGAAAACTATAAA-AAGAA
1 AAAAAACTATAAATAAGAA
95127034 AAAAAA
1 AAAAAA
95127040 AAAACTTAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.14
Consensus pattern (19 bp):
AAAAAACTATAAATAAGAA
Found at i:95127606 original size:67 final size:67
Alignment explanation
Indices: 95127514--95127648 Score: 218
Period size: 67 Copynumber: 2.0 Consensus size: 67
95127504 AAACAACAAA
* * * *
95127514 TTCTAAAATAGTAAGTAGAAATAAAATATGAG-AATTACCATGGGATATAATACAAATCTAACAT
1 TTCTAAAATAGAAAGTAAAAATAAAATATGAGAAATTACCATGGAATAAAATAC-AATCTAACAT
95127578 TAC
65 TAC
95127581 TTCTAAAATAGAAAGTAAAAATAAAATATGAGAAATTACCATGGAATAAAATACAATCTAACATT
1 TTCTAAAATAGAAAGTAAAAATAAAATATGAGAAATTACCATGGAATAAAATACAATCTAACATT
95127646 AC
66 AC
95127648 T
1 T
95127649 CAAACAAAAT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
67 44 0.70
68 19 0.30
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.27
Consensus pattern (67 bp):
TTCTAAAATAGAAAGTAAAAATAAAATATGAGAAATTACCATGGAATAAAATACAATCTAACATT
AC
Found at i:95128529 original size:283 final size:282
Alignment explanation
Indices: 95127815--95128588 Score: 1040
Period size: 282 Copynumber: 2.7 Consensus size: 282
95127805 TAAAACGGAG
* * *
95127815 AAATCTAAATAAAAAATGAAATTAAAAAAGGATTTAAAATCGAAAT-AAAAAACGTACGAAGCAA
1 AAATCAAAATAAAAAATGAAATTAAAAAAGGATTTAAAATCGAAATAAAAAAATGTAAGAAGCAA
* * * ** *
95127879 AGGACCTATTTGGCACTTAATTTGCCTGAAATTTCAAAATCTGGGAGAAACCAAAACCAAAGGGA
66 AGTACCTATTTGGCAATTAATTTGCCTGAAATTTCAAAATCGGGGAGAATTCAAAAGC-AAGGGA
* * * ** * *
95127944 CGAGAACTACAATTAGCCCATGCGGCGATCCTTTTCTGCT-GATGGCAGGATGTAGAAGGAATTA
130 CAAGAACTGCAATTAGTCCATGCGGCGATCCTTTT-TTATAAAAGGCAGGATGTAGAAGGAATTA
95128008 TGTAGAAAATATCCCTTTATATAACCCTATAAATAACCCTAAAACACCAAAAAAAAAAAAGAGAG
194 TGTAGAAAATATCCCTTTATATAACCCTATAAATAACCCTAAAACACCAAAAAAAAAAAAGAGAG
**
95128073 AAATGTAAATCAATAGGATAAAAT
259 AAATCAAAATCAATAGGATAAAAT
* *
95128097 AAATTAAAATAAAAAATGAGATTAAAAATA-GATTTAAAATC-AAA-ACAAAAAATGTAAGAAGC
1 AAATCAAAATAAAAAATGAAATTAAAAA-AGGATTTAAAATCGAAATA-AAAAAATGTAAGAAGC
** * * * * * *
95128159 TGAGTACCTATGTGGCAATTAATTTGCCTGAAATTTCAAAATTGAGGAGAATTTAAAAGAAAACG
64 AAAGTACCTATTTGGCAATTAATTTGCCTGAAATTTCAAAATCGGGGAGAATTCAAAAG-CAAGG
* * *
95128224 GACAAGAGCTGCAATTAGTCCATGCGACGATCCTTTTTTATAAAAGGCAGGAGGTAGAAGGAATT
128 GACAAGAACTGCAATTAGTCCATGCGGCGATCCTTTTTTATAAAAGGCAGGATGTAGAAGGAATT
* * *
95128289 ATGTAGAAAATATCTCTTTATATAACCTTATAAATAACCTTAAAACACC-AAAAAAAAAAAG-GA
193 ATGTAGAAAATATCCCTTTATATAACCCTATAAATAACCCTAAAACACCAAAAAAAAAAAAGAGA
95128352 GAAATCAAAATCAATAGGATAAAAT
258 GAAATCAAAATCAATAGGATAAAAT
* *
95128377 AAATCAAAATAAAAAATGATATTAAAAAAGGATTTAAAATCGAAATTAAAAAAAATGTAAGAAGA
1 AAATCAAAATAAAAAATGAAATTAAAAAAGGATTTAAAATCGAAA-T-AAAAAAATGTAAGAAGC
* *
95128442 AAAGTACCTATTTGGCAATTAATTTGCATGAAATTTCAAAATCGGGGAGAATTCAAAAGCAGGGA
64 AAAGTACCTATTTGGCAATTAATTTGCCTGAAATTTCAAAATCGGGGAGAATTCAAAAGCAAGG-
* ** * *
95128507 GACAAGAACTGCAATTAGTCCATGCGGCGATCCTTTTCTGCAAAAGGCGGGATGTAGAAAGAATT
128 GACAAGAACTGCAATTAGTCCATGCGGCGATCCTTTTTTATAAAAGGCAGGATGTAGAAGGAATT
95128572 ATGTAGAAAATATCCCT
193 ATGTAGAAAATATCCCT
95128589 GTACATAATG
Statistics
Matches: 425, Mismatches: 56, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
279 1 0.00
280 62 0.15
281 20 0.05
282 200 0.47
283 141 0.33
284 1 0.00
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.24
Consensus pattern (282 bp):
AAATCAAAATAAAAAATGAAATTAAAAAAGGATTTAAAATCGAAATAAAAAAATGTAAGAAGCAA
AGTACCTATTTGGCAATTAATTTGCCTGAAATTTCAAAATCGGGGAGAATTCAAAAGCAAGGGAC
AAGAACTGCAATTAGTCCATGCGGCGATCCTTTTTTATAAAAGGCAGGATGTAGAAGGAATTATG
TAGAAAATATCCCTTTATATAACCCTATAAATAACCCTAAAACACCAAAAAAAAAAAAGAGAGAA
ATCAAAATCAATAGGATAAAAT
Found at i:95132976 original size:13 final size:12
Alignment explanation
Indices: 95132946--95133001 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
95132936 AATGTGAAAC
*
95132946 AAAAAGAAATTG
1 AAAAAGAAGTTG
95132958 AAAAAGAAGTTG
1 AAAAAGAAGTTG
*
95132970 AAGAAAGAAG-AG
1 AA-AAAGAAGTTG
*
95132982 AAAATG-AGTTAG
1 AAAAAGAAGTT-G
95132994 AAAAAGAA
1 AAAAAGAA
95133002 ACAAAAGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 22 0.63
13 8 0.23
ACGTcount: A:0.64, C:0.00, G:0.23, T:0.12
Consensus pattern (12 bp):
AAAAAGAAGTTG
Found at i:95133302 original size:15 final size:14
Alignment explanation
Indices: 95133282--95133314 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
95133272 GTTCTTAAAA
95133282 GATCCCTCTCATTTT
1 GATCCC-CTCATTTT
95133297 GAT-CCCTCATTTT
1 GATCCCCTCATTTT
95133310 GATCC
1 GATCC
95133315 GATTAATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 11 0.65
14 3 0.18
15 3 0.18
ACGTcount: A:0.15, C:0.33, G:0.09, T:0.42
Consensus pattern (14 bp):
GATCCCCTCATTTT
Found at i:95133307 original size:13 final size:13
Alignment explanation
Indices: 95133289--95133314 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95133279 AAAGATCCCT
95133289 CTCATTTTGATCC
1 CTCATTTTGATCC
95133302 CTCATTTTGATCC
1 CTCATTTTGATCC
95133315 GATTAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.08, T:0.46
Consensus pattern (13 bp):
CTCATTTTGATCC
Found at i:95140615 original size:43 final size:43
Alignment explanation
Indices: 95140541--95140630 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
95140531 CTTTGAAACA
* * * * *
95140541 AAAATACAATAGAAATGAAAATGGACTTCACAACTAAGTCACT
1 AAAACACAATAGAAATGAAAACGAACCTCACAACTAAGCCACT
* *
95140584 AAAACACAATAGAAATGTAAACGAACCTCACAACTAAGCCTCT
1 AAAACACAATAGAAATGAAAACGAACCTCACAACTAAGCCACT
95140627 AAAA
1 AAAA
95140631 TGCAAGAAGC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.52, C:0.20, G:0.10, T:0.18
Consensus pattern (43 bp):
AAAACACAATAGAAATGAAAACGAACCTCACAACTAAGCCACT
Found at i:95140828 original size:86 final size:86
Alignment explanation
Indices: 95140738--95140901 Score: 231
Period size: 87 Copynumber: 1.9 Consensus size: 86
95140728 AATGCAACAA
* * * *
95140738 AAACAT-AAATAGATCACACAACTAGGCCTCTAAAATGCAATAGAATGTAAGATGGACATCACAA
1 AAACATAAAATAGATCACACAACTAAGCCTCTAAAATGAAATAAAATGTAA-ATGAACATCACAA
*
95140802 CTAGGCCTCTAAAATATAATGG
65 CTAAGCCTCTAAAATATAATGG
* * * *
95140824 AAACATAAAATGGATCTCACAACTAAGCCTTTAAAATGAAATAAAATGTAAATGAACCTCACAAC
1 AAACATAAAATAGATCACACAACTAAGCCTCTAAAATGAAATAAAATGTAAATGAACATCACAAC
95140889 TAAGCCTCTAAAA
66 TAAGCCTCTAAAA
95140902 AGAAAACTGA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
86 30 0.44
87 38 0.56
ACGTcount: A:0.48, C:0.19, G:0.12, T:0.21
Consensus pattern (86 bp):
AAACATAAAATAGATCACACAACTAAGCCTCTAAAATGAAATAAAATGTAAATGAACATCACAAC
TAAGCCTCTAAAATATAATGG
Found at i:95140890 original size:42 final size:42
Alignment explanation
Indices: 95140754--95140906 Score: 157
Period size: 42 Copynumber: 3.6 Consensus size: 42
95140744 AAATAGATCA
* * * *
95140754 CACAACTAGGCCTCTAAAATGCAATAGAATGTAAGATGGACAT
1 CACAACTAAGCCTCTAAAATGAAATAAAATGTAA-ATGGACCT
* * *
95140797 CACAACTAGGCCTCTAAAAT-ATAATGGAAACAT-AAAATGGATCT
1 CACAACTAAGCCTCTAAAATGA-AAT--AAA-ATGTAAATGGACCT
* *
95140841 CACAACTAAGCCTTTAAAATGAAATAAAATGTAAATGAACCT
1 CACAACTAAGCCTCTAAAATGAAATAAAATGTAAATGGACCT
*
95140883 CACAACTAAGCCTCTAAAAAGAAA
1 CACAACTAAGCCTCTAAAATGAAA
95140907 ACTGAACTCC
Statistics
Matches: 92, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
41 2 0.02
42 33 0.36
43 23 0.25
44 27 0.29
45 5 0.05
46 2 0.02
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.21
Consensus pattern (42 bp):
CACAACTAAGCCTCTAAAATGAAATAAAATGTAAATGGACCT
Found at i:95141076 original size:47 final size:46
Alignment explanation
Indices: 95141021--95141126 Score: 133
Period size: 47 Copynumber: 2.3 Consensus size: 46
95141011 TGTTGGGAGC
* * **
95141021 AAAGATCCTAAGATAATCCCTA-AAGAGGTTGAGAAATATCTTCGAG
1 AAAGATCCTAAAATAATCCCGAGAA-AGGTCAAGAAATATCTTCGAG
* *
95141067 TAAAGATCCTAAAATAATCTCGAGAAAGGTCAAGAAATATCTTTGAG
1 -AAAGATCCTAAAATAATCCCGAGAAAGGTCAAGAAATATCTTCGAG
95141114 AAAGATCCTAAAA
1 AAAGATCCTAAAA
95141127 GAAGAGAAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
46 13 0.25
47 37 0.71
48 2 0.04
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.24
Consensus pattern (46 bp):
AAAGATCCTAAAATAATCCCGAGAAAGGTCAAGAAATATCTTCGAG
Found at i:95141737 original size:16 final size:16
Alignment explanation
Indices: 95141716--95141753 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
95141706 CACTTTTTTA
95141716 TTTTTTTTC-CTCTCTC
1 TTTTTTTTCTCT-TCTC
*
95141732 TTTTTTTTCTCTTTTC
1 TTTTTTTTCTCTTCTC
95141748 TTTTTT
1 TTTTTT
95141754 CATTTTCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 18 0.90
17 2 0.10
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTTTTCTCTTCTC
Found at i:95142429 original size:26 final size:25
Alignment explanation
Indices: 95142400--95142449 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
95142390 ATTTCTCCTA
* *
95142400 TTTTTTCCTCTTTCTTTTTTTTTCTT
1 TTTTTTCCT-TTTCCTTTTATTTCTT
95142426 TTTTTTCCTTTTCCTTTTATTTCT
1 TTTTTTCCTTTTCCTTTTATTTCT
95142450 CTCTCCCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTTTTCCTTTTCCTTTTATTTCTT
Found at i:95142972 original size:16 final size:16
Alignment explanation
Indices: 95142947--95142977 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95142937 ACTACACCAG
*
95142947 AAATATAACAAAATAC
1 AAATAGAACAAAATAC
95142963 AAATAGAACAAAATA
1 AAATAGAACAAAATA
95142978 ATGTTAGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.03, T:0.16
Consensus pattern (16 bp):
AAATAGAACAAAATAC
Done.