Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 30 of 325
Found at i:11204005 original size:193 final size:193
Alignment explanation
Indices: 11203653--11204005 Score: 526
Period size: 193 Copynumber: 1.8 Consensus size: 193
11203643 TTCGAGAGCG
* * *
11203653 TCATTATTTTCTGTCAGCTTACCCAAAGCAATATTGAAGAGCGCTTGTAAGATGTCCATATTGGA
1 TCATTATTTTCTGTCAACTTACCCAAAGCAATATTGAAGAGCGCTTATAAGACGTCCATATTGGA
* *
11203718 ACTAAAGGCCTCCGCAACATATTCCTCAAGTTGCTCTTTCATCAAGTCCAGCTCATTAATGCGTC
66 ACTAAAGGCCTCCACAACATATTCCTCAAGTTGCTCTTTCATCAAGTCCAACTCATTAATGCGTC
*
11203783 CCTCAACTATCTCGAATGTTTCATTCACCTTACCCATGGATTCCTCAACTAAGGGCTTCCGCA
131 CCTCAACTATCTCGAATATTTCATTCACCTTACCCATGGATTCCTCAACTAAGGGCTTCCGCA
* ** * * * *
11203846 TCATTCTTTTCTGTCAACTTACCCGGAGCAGTATTGAGGAGTGCTTATAATACGTCCATATTGGA
1 TCATTATTTTCTGTCAACTTACCCAAAGCAATATTGAAGAGCGCTTATAAGACGTCCATATTGGA
* * * *
11203911 ACTAAGGGCCTCCATAACATATTCCTCAAGTTGCTCTTTCATCGAGTCCAACTTATTAATGCGTC
66 ACTAAAGGCCTCCACAACATATTCCTCAAGTTGCTCTTTCATCAAGTCCAACTCATTAATGCGTC
* * *
11203976 CCTCAACTATCTTGAGTATTTCCTTCACCT
131 CCTCAACTATCTCGAATATTTCATTCACCT
11204006 CACTTACAAG
Statistics
Matches: 140, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
193 140 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (193 bp):
TCATTATTTTCTGTCAACTTACCCAAAGCAATATTGAAGAGCGCTTATAAGACGTCCATATTGGA
ACTAAAGGCCTCCACAACATATTCCTCAAGTTGCTCTTTCATCAAGTCCAACTCATTAATGCGTC
CCTCAACTATCTCGAATATTTCATTCACCTTACCCATGGATTCCTCAACTAAGGGCTTCCGCA
Found at i:11205024 original size:20 final size:20
Alignment explanation
Indices: 11205001--11205049 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
11204991 TATTTATAAA
*
11205001 TATTTTTATAATTAT-ATATG
1 TATTTTTATAA-AATCATATG
* *
11205021 TATTTTTGTAAAATCTTATG
1 TATTTTTATAAAATCATATG
11205041 TATTTTTAT
1 TATTTTTAT
11205050 TGAAAAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (20 bp):
TATTTTTATAAAATCATATG
Found at i:11209854 original size:20 final size:21
Alignment explanation
Indices: 11209817--11209860 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
11209807 TAAGTATCTT
*
11209817 TTTTTAAAAATCAAAATATTA
1 TTTTTAAAAATCAAAATATAA
*
11209838 TTTTTAAAAAT-ATAATATAA
1 TTTTTAAAAATCAAAATATAA
11209858 TTT
1 TTT
11209861 CATAATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTTTAAAAATCAAAATATAA
Found at i:11214526 original size:20 final size:21
Alignment explanation
Indices: 11214488--11214527 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
11214478 TCTTCAGTAT
* *
11214488 CCATGATGGTAAAGCATAGGC
1 CCATGAAGGTAAAGAATAGGC
11214509 CCATGAAGG-AAAGAATAGG
1 CCATGAAGGTAAAGAATAGG
11214528 AGGTCTCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.40, C:0.15, G:0.30, T:0.15
Consensus pattern (21 bp):
CCATGAAGGTAAAGAATAGGC
Found at i:11217179 original size:3 final size:3
Alignment explanation
Indices: 11217165--11217200 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
11217155 AGTAACCAAT
*
11217165 AAC AAT AAC AAC AAC AAC AAC AAC AAC AAC ATAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC A-AC AA
11217201 AAGAATCAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.28, G:0.00, T:0.06
Consensus pattern (3 bp):
AAC
Found at i:11217514 original size:15 final size:15
Alignment explanation
Indices: 11217490--11217524 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
11217480 TATCGAAGAG
*
11217490 CTTCCGGCTCTTAAA
1 CTTCCGGCTCGTAAA
*
11217505 CTTCCTGCTCGTAAA
1 CTTCCGGCTCGTAAA
11217520 CTTCC
1 CTTCC
11217525 CCGTAAACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.37, G:0.11, T:0.34
Consensus pattern (15 bp):
CTTCCGGCTCGTAAA
Found at i:11219372 original size:22 final size:22
Alignment explanation
Indices: 11219333--11219378 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
11219323 GAATATCTTA
11219333 TTTTTTTTAAAGATATTTTAAT
1 TTTTTTTTAAAGATATTTTAAT
*
11219355 TTTTTTATTAAATA-ATTTTAAT
1 TTTTTT-TTAAAGATATTTTAAT
11219377 TT
1 TT
11219379 AAAGTTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTTTTTTAAAGATATTTTAAT
Found at i:11221473 original size:64 final size:64
Alignment explanation
Indices: 11221380--11221505 Score: 234
Period size: 64 Copynumber: 2.0 Consensus size: 64
11221370 CGGAATTTGC
*
11221380 TTAATGATGAGTTGTATTTATGAAGATTGATGAAGAGTATCTTACATATTTAAGTAGAATTTAT
1 TTAATGATGAGTTGTATTTATGAAGATTGATGAAGAGTATCTTACATAATTAAGTAGAATTTAT
*
11221444 TTAATGATGAGTTGTATTTATGAAGATTGATGAAGAGTATCTTACATAATTAAGTAGTATTT
1 TTAATGATGAGTTGTATTTATGAAGATTGATGAAGAGTATCTTACATAATTAAGTAGAATTT
11221506 TATAATTGAG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.42
Consensus pattern (64 bp):
TTAATGATGAGTTGTATTTATGAAGATTGATGAAGAGTATCTTACATAATTAAGTAGAATTTAT
Found at i:11223948 original size:8 final size:8
Alignment explanation
Indices: 11223935--11223963 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
11223925 TATGGTCTTG
11223935 CACATAGT
1 CACATAGT
11223943 CACATAGT
1 CACATAGT
11223951 CACATA-T
1 CACATAGT
11223958 CACATA
1 CACATA
11223964 CCGAGGCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.41, C:0.28, G:0.07, T:0.24
Consensus pattern (8 bp):
CACATAGT
Found at i:11227325 original size:65 final size:65
Alignment explanation
Indices: 11227206--11227328 Score: 160
Period size: 65 Copynumber: 1.9 Consensus size: 65
11227196 TTTGATAAAT
* * * *
11227206 TTAAATTTTATAAGCGTTGAATCTATATTAGAAATGTATTTGATAAATTTAAATTTTAAATGCAG
1 TTAAATTTTATAAGCGTTGAATCTATATTAAAAATGTACTTGACAAATTCAAATTTTAAATGCAG
* *
11227271 TTAAATTTTATAAGTGTTGAATTTATATTAAAAAT-TACTTGACCCAAA-TCAAATTTTA
1 TTAAATTTTATAAGCGTTGAATCTATATTAAAAATGTACTTGA--CAAATTCAAATTTTA
11227329 TGTTTTCATT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
64 6 0.12
65 41 0.82
66 3 0.06
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.43
Consensus pattern (65 bp):
TTAAATTTTATAAGCGTTGAATCTATATTAAAAATGTACTTGACAAATTCAAATTTTAAATGCAG
Found at i:11234400 original size:17 final size:17
Alignment explanation
Indices: 11234380--11234471 Score: 60
Period size: 17 Copynumber: 5.2 Consensus size: 17
11234370 ATATTTAATT
11234380 AATTTTTAAATTTTAAA
1 AATTTTTAAATTTTAAA
* * **
11234397 AATTTATATATTTTTTA
1 AATTTTTAAATTTTAAA
* *
11234414 ATTTTTTAATAATTTTAAT
1 AATTTTT-A-AATTTTAAA
** *
11234433 AA-TTTTATGTTTTTTAA
1 AATTTTTA-AATTTTAAA
11234450 AATTTTTAAATTTTAATA
1 AATTTTTAAATTTTAA-A
11234468 AATT
1 AATT
11234472 AATTAAATTA
Statistics
Matches: 53, Mismatches: 18, Indels: 7
0.68 0.23 0.09
Matches are distributed among these distances:
17 32 0.60
18 15 0.28
19 6 0.11
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (17 bp):
AATTTTTAAATTTTAAA
Found at i:11234402 original size:26 final size:27
Alignment explanation
Indices: 11234367--11234438 Score: 69
Period size: 26 Copynumber: 2.7 Consensus size: 27
11234357 AGATGACACA
*
11234367 TAAATATTTAATTAATTTTTAA-ATTT
1 TAAAAATTTAATTAATTTTTAATATTT
* *
11234393 TAAAAATTT-ATATATTTTTTAATTTTT
1 TAAAAATTTAAT-TAATTTTTAATATTT
*
11234420 TAATAATTTTAA-TAATTTT
1 TAA-AAATTTAATTAATTTT
11234439 ATGTTTTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
25 2 0.05
26 17 0.46
27 12 0.32
28 5 0.14
29 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (27 bp):
TAAAAATTTAATTAATTTTTAATATTT
Found at i:11234429 original size:9 final size:9
Alignment explanation
Indices: 11234373--11234468 Score: 51
Period size: 8 Copynumber: 10.9 Consensus size: 9
11234363 CACATAAATA
11234373 TTTAATTAAT
1 TTTAA-TAAT
*
11234383 TTTTA-AAT
1 TTTAATAAT
*
11234391 TTTAA-AAA
1 TTTAATAAT
*
11234399 TTTATATATTT
1 TTTA-ATA-AT
*
11234410 TTTAAT-TT
1 TTTAATAAT
11234418 TTTAATAAT
1 TTTAATAAT
11234427 TTTAATAAT
1 TTTAATAAT
**
11234436 TTT-ATGTTT
1 TTTAAT-AAT
11234445 TTTAA-AAT
1 TTTAATAAT
*
11234453 TTTTA-AAT
1 TTTAATAAT
11234461 TTTAATAA
1 TTTAATAA
11234469 ATTAATTAAA
Statistics
Matches: 67, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
8 35 0.52
9 20 0.30
10 8 0.12
11 4 0.06
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (9 bp):
TTTAATAAT
Found at i:11235325 original size:7 final size:8
Alignment explanation
Indices: 11235309--11235333 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
11235299 TTTATGAACA
11235309 TTTTATTT
1 TTTTATTT
11235317 TTTTATTT
1 TTTTATTT
11235325 TTTTATTT
1 TTTTATTT
11235333 T
1 T
11235334 ATAAATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTATTT
Found at i:11237957 original size:16 final size:16
Alignment explanation
Indices: 11237935--11237974 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
11237925 ATAAATTGTC
*
11237935 TTTTTATTTT-TTTCT
1 TTTTTATTTTGTTTAT
11237950 TATTTTATTTTGTTTAT
1 T-TTTTATTTTGTTTAT
11237967 TTTTTATT
1 TTTTTATT
11237975 ATTAACTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 16 0.73
17 5 0.23
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTTTATTTTGTTTAT
Found at i:11238013 original size:21 final size:21
Alignment explanation
Indices: 11237987--11238032 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
11237977 TAACTTTAAA
11237987 AAAATTGTAATGTA-TATTTTT
1 AAAATTGTAAT-TATTATTTTT
*
11238008 AAAATTTTAATTATTATTTTT
1 AAAATTGTAATTATTATTTTT
11238029 AAAA
1 AAAA
11238033 GTATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (21 bp):
AAAATTGTAATTATTATTTTT
Found at i:11238135 original size:14 final size:14
Alignment explanation
Indices: 11238118--11238144 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11238108 TTTTTTAAAA
11238118 TTTTAAATATTAAT
1 TTTTAAATATTAAT
11238132 TTTTAAATATTAA
1 TTTTAAATATTAA
11238145 CCATATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTTAAATATTAAT
Found at i:11238144 original size:37 final size:35
Alignment explanation
Indices: 11238003--11238144 Score: 144
Period size: 37 Copynumber: 4.0 Consensus size: 35
11237993 GTAATGTATA
* *
11238003 TTTTTAAAATTTTAATTATTATTTTTAAAAGT-AT
1 TTTTTAAAATTTTAAATATTATTTTTAAAATTAAT
* * * *
11238037 TTTTT-TAATTTTAGATATATATTTGTGAAATTAAT
1 TTTTTAAAATTTTAAATAT-TATTTTTAAAATTAAT
* * *
11238072 TTTTTATATATTTTAAAAATGTATTTTTCAAATTAAT
1 TTTTTA-AAATTTTAAATAT-TATTTTTAAAATTAAT
11238109 TTTTTAAAATTTTAAATATTAATTTTTAAATATTAA
1 TTTTTAAAATTTTAAATATT-ATTTTTAAA-ATTAA
11238145 CCATATTTTT
Statistics
Matches: 86, Mismatches: 16, Indels: 9
0.77 0.14 0.08
Matches are distributed among these distances:
33 10 0.12
34 15 0.17
35 8 0.09
36 19 0.22
37 34 0.40
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.57
Consensus pattern (35 bp):
TTTTTAAAATTTTAAATATTATTTTTAAAATTAAT
Found at i:11238151 original size:23 final size:23
Alignment explanation
Indices: 11238103--11238144 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
11238093 TATTTTTCAA
*
11238103 ATTAATTTTTTAAAATTTTAAAT
1 ATTAATTTTTTAAAATATTAAAT
11238126 ATTAA-TTTTT-AAATATTAA
1 ATTAATTTTTTAAAATATTAA
11238145 CCATATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 5 0.28
23 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
ATTAATTTTTTAAAATATTAAAT
Found at i:11238297 original size:20 final size:19
Alignment explanation
Indices: 11238268--11238314 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
11238258 TATATTTTTT
11238268 AAAAATTAAAAA-AAAGTTA
1 AAAAATTAAAAAGAAA-TTA
11238287 AAAAATGTAAAAAGAAATTA
1 AAAAAT-TAAAAAGAAATTA
11238307 AAGAAATT
1 AA-AAATT
11238315 GTATTTACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 6 0.24
20 12 0.48
21 7 0.28
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (19 bp):
AAAAATTAAAAAGAAATTA
Found at i:11238396 original size:14 final size:14
Alignment explanation
Indices: 11238377--11238415 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
11238367 TAATATTTAA
11238377 AAATTTTAAAAAAT
1 AAATTTTAAAAAAT
*
11238391 AAA-TTTGAAAAAT
1 AAATTTTAAAAAAT
11238404 AAATTTTTAAAA
1 AAA-TTTTAAAA
11238416 TATATAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 12 0.57
14 3 0.14
15 6 0.29
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (14 bp):
AAATTTTAAAAAAT
Found at i:11238425 original size:36 final size:34
Alignment explanation
Indices: 11238384--11238495 Score: 93
Period size: 36 Copynumber: 3.2 Consensus size: 34
11238374 TAAAAATTTT
* * *
11238384 AAAAAATAAATTTGAAAAATAAATTTTTAAAATATA
1 AAAAAAT-AATTTCAAAAATAAATATCTAAAAT-TA
* * *
11238420 TAAAAATTAATTTCACAAATATATATCTAAAATTA
1 -AAAAAATAATTTCAAAAATAAATATCTAAAATTA
* * *
11238455 AAAAAATATTTTTAAAAAT-AATAAT-TAAAATTT
1 AAAAAATAATTTCAAAAATAAAT-ATCTAAAATTA
11238488 AAAAAATA
1 AAAAAATA
11238496 TACATTACAA
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
33 17 0.27
34 17 0.27
35 2 0.03
36 20 0.32
37 6 0.10
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.35
Consensus pattern (34 bp):
AAAAAATAATTTCAAAAATAAATATCTAAAATTA
Found at i:11238492 original size:21 final size:22
Alignment explanation
Indices: 11238468--11238509 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
11238458 AAATATTTTT
11238468 AAAAATAATA-ATTA-AAATTTA
1 AAAAAT-ATACATTACAAATTTA
11238489 AAAAATATACATTACAAATTT
1 AAAAATATACATTACAAATTT
11238510 TTTAAAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.16
21 10 0.53
22 6 0.32
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAAATATACATTACAAATTTA
Found at i:11238633 original size:31 final size:32
Alignment explanation
Indices: 11238595--11238669 Score: 104
Period size: 31 Copynumber: 2.4 Consensus size: 32
11238585 ATTAAGAAAT
11238595 AAAATAAAAAAGTAAAAAA-AAAAGAAATATG
1 AAAATAAAAAAGTAAAAAACAAAAGAAATATG
11238626 AAAATAAAAGGAA--AAAAAACAAAAGAAATATG
1 AAAATAAAA--AAGTAAAAAACAAAAGAAATATG
11238658 AAAA-AAAAAAGT
1 AAAATAAAAAAGT
11238670 GTCAGGTAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
29 2 0.05
31 19 0.49
32 16 0.41
33 2 0.05
ACGTcount: A:0.77, C:0.01, G:0.11, T:0.11
Consensus pattern (32 bp):
AAAATAAAAAAGTAAAAAACAAAAGAAATATG
Found at i:11238649 original size:20 final size:21
Alignment explanation
Indices: 11238626--11238665 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
11238616 AAGAAATATG
*
11238626 AAAATAAA-AGGAAAAAAAAC
1 AAAAGAAATAGGAAAAAAAAC
*
11238646 AAAAGAAATATGAAAAAAAA
1 AAAAGAAATAGGAAAAAAAA
11238666 AAGTGTCAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.80, C:0.03, G:0.10, T:0.07
Consensus pattern (21 bp):
AAAAGAAATAGGAAAAAAAAC
Found at i:11241945 original size:15 final size:15
Alignment explanation
Indices: 11241922--11241951 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11241912 ACTAAATAAT
11241922 TAATAAATCAAAATA
1 TAATAAATCAAAATA
*
11241937 TAATGAATCAAAATA
1 TAATAAATCAAAATA
11241952 AATCTAGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (15 bp):
TAATAAATCAAAATA
Found at i:11245704 original size:18 final size:21
Alignment explanation
Indices: 11245676--11245714 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
11245666 ATATTGCATC
11245676 AAAAATAAATA-TTT-ATATT
1 AAAAATAAATACTTTAATATT
11245695 AAAAAT-AATACTTTAATATT
1 AAAAATAAATACTTTAATATT
11245715 TGTTTATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAAATAAATACTTTAATATT
Found at i:11248039 original size:22 final size:22
Alignment explanation
Indices: 11248014--11248055 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
11248004 TTTTAATGTG
11248014 TTGATAATAATA-TCAATATTAA
1 TTGA-AATAATATTCAATATTAA
*
11248036 TTGAATTAATATTCAATATT
1 TTGAAATAATATTCAATATT
11248056 TTCAAACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (22 bp):
TTGAAATAATATTCAATATTAA
Found at i:11249195 original size:17 final size:18
Alignment explanation
Indices: 11249159--11249195 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
11249149 AATTTTAAAA
11249159 ATTAAAAATATGTTTTATT
1 ATTAAAAATATG-TTTATT
11249178 ATTAAAAATATG-TTATT
1 ATTAAAAATATGTTTATT
11249195 A
1 A
11249196 GTACTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (18 bp):
ATTAAAAATATGTTTATT
Found at i:11249411 original size:3 final size:3
Alignment explanation
Indices: 11249403--11249427 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
11249393 TTTATTAACA
11249403 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
11249428 TAAATGTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:11258940 original size:21 final size:21
Alignment explanation
Indices: 11258877--11258941 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
11258867 CGGAAATAGT
* *
11258877 ATACGATACATAAAGTGCCTGA
1 ATACGACACATATAGTGCCT-A
** * *
11258899 A-ACGACACACGTGGTGTCTA
1 ATACGACACATATAGTGCCTA
11258919 ATACGACACATATAGTGCCTA
1 ATACGACACATATAGTGCCTA
11258940 AT
1 AT
11258942 CGGTAAAGCC
Statistics
Matches: 32, Mismatches: 10, Indels: 3
0.71 0.22 0.07
Matches are distributed among these distances:
20 2 0.06
21 29 0.91
22 1 0.03
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (21 bp):
ATACGACACATATAGTGCCTA
Found at i:11259771 original size:19 final size:18
Alignment explanation
Indices: 11259733--11259772 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
11259723 TTTACTTTAC
11259733 TATATATATAATAAATAA
1 TATATATATAATAAATAA
11259751 TATA-ATATAATATAATAA
1 TATATATATAATA-AATAA
11259769 -ATAT
1 TATAT
11259773 CTTTATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TATATATATAATAAATAA
Found at i:11261182 original size:15 final size:15
Alignment explanation
Indices: 11261162--11261211 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
11261152 TGTATTTTAC
11261162 TTATTTTTATAAATA
1 TTATTTTTATAAATA
*
11261177 TTATTTTGT-T--ATC
1 TTATTTT-TATAAATA
11261190 TTATTTTTATAAATA
1 TTATTTTTATAAATA
11261205 TTATTTT
1 TTATTTT
11261212 GTTATCTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 1 0.03
13 10 0.34
15 17 0.59
16 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (15 bp):
TTATTTTTATAAATA
Found at i:11261195 original size:13 final size:13
Alignment explanation
Indices: 11261177--11261224 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
11261167 TTTATAAATA
11261177 TTATTTTGTTATC
1 TTATTTTGTTATC
*
11261190 TTATTTT-TATAAATA
1 TTATTTTGT-T--ATC
11261205 TTATTTTGTTATC
1 TTATTTTGTTATC
11261218 TTATTTT
1 TTATTTT
11261225 TATATATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 1 0.03
13 17 0.59
15 10 0.34
16 1 0.03
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.69
Consensus pattern (13 bp):
TTATTTTGTTATC
Found at i:11261201 original size:28 final size:28
Alignment explanation
Indices: 11261161--11261235 Score: 141
Period size: 28 Copynumber: 2.7 Consensus size: 28
11261151 GTGTATTTTA
11261161 CTTATTTTTATAAATATTATTTTGTTAT
1 CTTATTTTTATAAATATTATTTTGTTAT
11261189 CTTATTTTTATAAATATTATTTTGTTAT
1 CTTATTTTTATAAATATTATTTTGTTAT
*
11261217 CTTATTTTTATATATATTA
1 CTTATTTTTATAAATATTA
11261236 ATTTATTTTA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (28 bp):
CTTATTTTTATAAATATTATTTTGTTAT
Found at i:11268212 original size:28 final size:28
Alignment explanation
Indices: 11268172--11268228 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
11268162 AAAAAAAAAA
11268172 ACAGCGACATTTAGCTAAGAAGAAAGAC
1 ACAGCGACATTTAGCTAAGAAGAAAGAC
11268200 ACAGCGACATTTAGCTAAGAAGAAAGAC
1 ACAGCGACATTTAGCTAAGAAGAAAGAC
11268228 A
1 A
11268229 AGTTCAAGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (28 bp):
ACAGCGACATTTAGCTAAGAAGAAAGAC
Found at i:11271362 original size:7 final size:7
Alignment explanation
Indices: 11271350--11271395 Score: 92
Period size: 7 Copynumber: 6.6 Consensus size: 7
11271340 AGGATGGAAA
11271350 TTAAATT
1 TTAAATT
11271357 TTAAATT
1 TTAAATT
11271364 TTAAATT
1 TTAAATT
11271371 TTAAATT
1 TTAAATT
11271378 TTAAATT
1 TTAAATT
11271385 TTAAATT
1 TTAAATT
11271392 TTAA
1 TTAA
11271396 TAATTATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTAAATT
Found at i:11271471 original size:30 final size:30
Alignment explanation
Indices: 11271403--11271479 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
11271393 TAATAATTAT
* * *
11271403 TATTTTTA-TAATTTAAAAGAAATAAATTA
1 TATTTTTATTATTTTTAAAGAAATAAAATA
*
11271432 -ATTTTTTATTATTTTTAAAGAGATAAAATA
1 TA-TTTTTATTATTTTTAAAGAAATAAAATA
11271462 TATTTTTATT-TTTATTAA
1 TATTTTTATTATTT-TTAA
11271480 TTTAAATATT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
28 1 0.03
29 9 0.22
30 29 0.73
31 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (30 bp):
TATTTTTATTATTTTTAAAGAAATAAAATA
Found at i:11274104 original size:22 final size:22
Alignment explanation
Indices: 11274064--11274106 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
11274054 ATATTTTGTA
*
11274064 ATGAATATTTTACGTATATAAT
1 ATGAATATTTTACATATATAAT
11274086 ATGAATATTTTA-ATAATATAA
1 ATGAATATTTTACAT-ATATAA
11274107 AAATATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (22 bp):
ATGAATATTTTACATATATAAT
Found at i:11291831 original size:39 final size:41
Alignment explanation
Indices: 11291786--11291891 Score: 119
Period size: 39 Copynumber: 2.6 Consensus size: 41
11291776 CGGATTAAAG
* * *
11291786 GATCTTATCTCTCTGAAGTTACAGTAGAAGATCA-CA-TCA
1 GATCTTATCTCCCTGAAGTTACAGTAGAAGACCAGAATTCA
* *
11291825 GGTCTTATCTCCCTG-AGATTACAGTGGAAGACCAGAATTTCA
1 GATCTTATCTCCCTGAAG-TTACAGTAGAAGACCAGAA-TTCA
*
11291867 GATCTTATCTCCCTGAGGTTACAGT
1 GATCTTATCTCCCTGAAGTTACAGT
11291892 GGAGCAGATT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
38 2 0.04
39 27 0.49
40 1 0.02
42 24 0.44
43 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (41 bp):
GATCTTATCTCCCTGAAGTTACAGTAGAAGACCAGAATTCA
Found at i:11291924 original size:42 final size:42
Alignment explanation
Indices: 11291660--11292016 Score: 161
Period size: 42 Copynumber: 8.5 Consensus size: 42
11291650 ATTATACAGG
* * *
11291660 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGA-ATTTCAGA
1 TCTTATCT-CCTGAGGTTACAGTGGAGCAGATCAAAGACA----AGA
* * *
11291706 TCTTATCTCCCTGAGATTACAGCGGAGCAGATC-AAGA-TAGTAA
1 TCTTATCT-CCTGAGGTTACAGTGGAGCAGATCAAAGACAAG--A
* * * * *
11291749 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG----GA
1 TCTTATCTCC-TGAGGTTACAGTGGAGCAGATCAAAGACAAGA
* * * * *
11291788 TCTTATCTCTCTGAAGTTACAGT--AGAAGATCACA-TC-AGG
1 TCTTATCTC-CTGAGGTTACAGTGGAGCAGATCAAAGACAAGA
* * **
11291827 TCTTATCTCCCTGAGATTACAGTGGA--AGACCAGAATTTC-AGA
1 TCTTATCT-CCTGAGGTTACAGTGGAGCAGATCA-AA-GACAAGA
** *
11291869 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAAGA
1 TCTTATCT-CCTGAGGTTACAGTGGAGCAGATCAAAGACAAGA
* * **
11291912 TCTTATCTCCTGAGATTACAGCGGAGCAGATCAAAGACACTA
1 TCTTATCTCCTGAGGTTACAGTGGAGCAGATCAAAGACAAGA
* * ** * *
11291954 TCCTATCTCCTGAAGTTACAGTGGAGTGGATTAAATA-AAGGA
1 TCTTATCTCCTGAGGTTACAGTGGAGCAGATCAAAGACAA-GA
11291996 TCTTATCTCTCTGA-GTTACAG
1 TCTTATCTC-CTGAGGTTACAG
11292017 CAGAGTAGGT
Statistics
Matches: 245, Mismatches: 47, Indels: 42
0.73 0.14 0.13
Matches are distributed among these distances:
37 7 0.03
39 43 0.18
40 3 0.01
41 5 0.02
42 104 0.42
43 43 0.18
44 6 0.02
45 4 0.02
46 30 0.12
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (42 bp):
TCTTATCTCCTGAGGTTACAGTGGAGCAGATCAAAGACAAGA
Found at i:11303570 original size:43 final size:43
Alignment explanation
Indices: 11303519--11303605 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
11303509 AATAAAAAGG
11303519 ACTTGAAACAAACAATTTTCACAACAAAACAATCTTAGCCATC
1 ACTTGAAACAAACAATTTTCACAACAAAACAATCTTAGCCATC
11303562 ACTTGAAACAAACAATTTTCACAACAAAACAATCTTAGCCATC
1 ACTTGAAACAAACAATTTTCACAACAAAACAATCTTAGCCATC
11303605 A
1 A
11303606 ATCATAATGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.47, C:0.25, G:0.05, T:0.23
Consensus pattern (43 bp):
ACTTGAAACAAACAATTTTCACAACAAAACAATCTTAGCCATC
Found at i:11320705 original size:18 final size:18
Alignment explanation
Indices: 11320667--11320702 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
11320657 TTAAATTTTA
11320667 AAATATAAAAATTAAATT
1 AAATATAAAAATTAAATT
11320685 AAATAATAAAAATTAAAT
1 AAAT-ATAAAAATTAAAT
11320703 AAAGAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATATAAAAATTAAATT
Found at i:11320712 original size:13 final size:14
Alignment explanation
Indices: 11320680--11320715 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
11320670 TATAAAAATT
11320680 AAATTAAATAATAA
1 AAATTAAATAATAA
*
11320694 AAATTAAATAA-AG
1 AAATTAAATAATAA
11320707 AAATTAAAT
1 AAATTAAAT
11320716 TTCATTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (14 bp):
AAATTAAATAATAA
Found at i:11332693 original size:17 final size:17
Alignment explanation
Indices: 11332644--11332698 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 17
11332634 TTTAGCGTTG
*
11332644 ATTATATTACAAAATTTT
1 ATTAT-TTATAAAATTTT
*
11332662 -CTATTT-TAAATATTTT
1 ATTATTTATAAA-ATTTT
11332678 ATTATTTATAAAA-TTT
1 ATTATTTATAAAATTTT
11332694 ATTAT
1 ATTAT
11332699 GTTTATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 3 0.10
16 15 0.48
17 9 0.29
18 4 0.13
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTATTTATAAAATTTT
Found at i:11344383 original size:46 final size:46
Alignment explanation
Indices: 11344316--11344409 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
11344306 GATTTCCTGG
11344316 TAGATTTGGCCAACCCTTCAAATTGCTGTTCAGTCTTTAGAAGTTA
1 TAGATTTGGCCAACCCTTCAAATTGCTGTTCAGTCTTTAGAAGTTA
11344362 TAGATTTGGCCAACCCTTCAAATTGCTGTTCAGTCTTTAGAAGTTA
1 TAGATTTGGCCAACCCTTCAAATTGCTGTTCAGTCTTTAGAAGTTA
11344408 TA
1 TA
11344410 ACAAGCAACC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (46 bp):
TAGATTTGGCCAACCCTTCAAATTGCTGTTCAGTCTTTAGAAGTTA
Found at i:11351132 original size:23 final size:24
Alignment explanation
Indices: 11351106--11351152 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
11351096 AAAAGCTAAC
*
11351106 TACAAAATTAAATC-TCTAAGATT
1 TACAAAATAAAATCTTCTAAGATT
*
11351129 TACAGAATAAAATCTTCTAAGATT
1 TACAAAATAAAATCTTCTAAGATT
11351153 ATAAATCCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.47, C:0.13, G:0.06, T:0.34
Consensus pattern (24 bp):
TACAAAATAAAATCTTCTAAGATT
Found at i:11353743 original size:29 final size:30
Alignment explanation
Indices: 11353688--11353744 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
11353678 ATTAGACTAA
**
11353688 AATTTTTAAATTTAAAAAGTATGAGGATTG
1 AATTTTTAAATTTAAAAAGTAAAAGGATTG
* *
11353718 AATTTTTAACTTT-TAAAGTAAAAGGAT
1 AATTTTTAAATTTAAAAAGTAAAAGGAT
11353745 CAAATCTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 11 0.48
30 12 0.52
ACGTcount: A:0.44, C:0.02, G:0.14, T:0.40
Consensus pattern (30 bp):
AATTTTTAAATTTAAAAAGTAAAAGGATTG
Found at i:11359652 original size:15 final size:15
Alignment explanation
Indices: 11359632--11359673 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
11359622 AATTGATTTA
11359632 TTAATTATTTAAATT
1 TTAATTATTTAAATT
*
11359647 TTAATT-TGTAAATT
1 TTAATTATTTAAATT
11359661 TATAA-TATTTAAA
1 T-TAATTATTTAAA
11359674 ATTATTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
TTAATTATTTAAATT
Found at i:11361339 original size:5 final size:5
Alignment explanation
Indices: 11361313--11361370 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
11361303 ATGTGTTAAA
* *
11361313 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
11361362 ATATT ATAT
1 ATATT ATAT
11361371 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 31 0.69
6 10 0.22
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:11361349 original size:10 final size:9
Alignment explanation
Indices: 11361314--11361371 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
11361304 TGTGTTAAAA
11361314 TATATATAT
1 TATATATAT
*
11361323 TAAAT-TAT
1 TATATATAT
11361331 TAT-TATAT
1 TATATATAT
11361339 TATAGTATAT
1 TATA-TATAT
11361349 TATAT-TA-
1 TATATATAT
11361356 TATATTATAT
1 TATA-TATAT
11361366 TATATA
1 TATATA
11361372 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.34
9 9 0.22
10 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:11361361 original size:12 final size:12
Alignment explanation
Indices: 11361316--11361371 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
11361306 TGTTAAAATA
*
11361316 TATATATTAAAT
1 TATATATTATAT
11361328 TAT-TATTATATT
1 TATATATTATA-T
11361340 ATAGTATATTATAT
1 -TA-TATATTATAT
11361354 TATATATTATAT
1 TATATATTATAT
11361366 TATATA
1 TATATA
11361372 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:11362713 original size:18 final size:19
Alignment explanation
Indices: 11362690--11362728 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
11362680 ATATATAGAT
11362690 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
11362708 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
11362727 AT
1 AT
11362729 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:11363078 original size:39 final size:40
Alignment explanation
Indices: 11362968--11363078 Score: 100
Period size: 38 Copynumber: 2.8 Consensus size: 40
11362958 GACCTCGAGT
* * **
11362968 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGATAGAGC
** ** * *
11363009 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGATAGAGC
*
11363047 CGATGAGACACTGGGTGTCAAATATTGCTTCG
1 CGATGAGACACTGGGTGTCAAATATTACTTCG
11363079 AACTATCCGA
Statistics
Matches: 53, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
38 18 0.34
39 18 0.34
40 1 0.02
41 16 0.30
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGATAGAGC
Found at i:11363245 original size:18 final size:19
Alignment explanation
Indices: 11363224--11363264 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
11363214 AATGAAATGA
11363224 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
11363242 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
11363261 GAAA
1 GAAA
11363265 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:11366446 original size:21 final size:21
Alignment explanation
Indices: 11366414--11366454 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
11366404 TCATAAAGTT
11366414 TGTTTATATTTTAATTAATCA
1 TGTTTATATTTTAATTAATCA
11366435 TGTTT-TAGTTTTAATTAATC
1 TGTTTATA-TTTTAATTAATC
11366455 TTAATTTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (21 bp):
TGTTTATATTTTAATTAATCA
Found at i:11366462 original size:21 final size:20
Alignment explanation
Indices: 11366420--11366479 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
11366410 AGTTTGTTTA
* **
11366420 TATTTTAATTAATCATGTTT
1 TATTTTAATTAATCTTAATT
11366440 TAGTTTTAATTAATCTTAATT
1 TA-TTTTAATTAATCTTAATT
* *
11366461 TA-CTTAATTAAGCTTAATT
1 TATTTTAATTAATCTTAATT
11366480 GTTTTTTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 15 0.44
20 2 0.06
21 17 0.50
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
TATTTTAATTAATCTTAATT
Found at i:11369483 original size:32 final size:32
Alignment explanation
Indices: 11369439--11369504 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
11369429 TTGAGATAAA
*
11369439 ATGCTTATCAATGCTTTTTGTTAGGTTATGTG
1 ATGCTTACCAATGCTTTTTGTTAGGTTATGTG
11369471 ATGCTTACCAATGCTTTTTGTTAGGTTATGTG
1 ATGCTTACCAATGCTTTTTGTTAGGTTATGTG
11369503 AT
1 AT
11369505 TTAATGGAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.20, C:0.11, G:0.21, T:0.48
Consensus pattern (32 bp):
ATGCTTACCAATGCTTTTTGTTAGGTTATGTG
Found at i:11378558 original size:6 final size:6
Alignment explanation
Indices: 11378547--11378583 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
11378537 CCTCCTCTCA
11378547 CAAACC CAAACC CAAACC CAAACC CAAACC CAAACC C
1 CAAACC CAAACC CAAACC CAAACC CAAACC CAAACC C
11378584 TGTCAAATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00
Consensus pattern (6 bp):
CAAACC
Found at i:11389374 original size:11 final size:11
Alignment explanation
Indices: 11389360--11389395 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
11389350 TTCAGCTGAT
11389360 GAAAATGAAGA
1 GAAAATGAAGA
11389371 GAAAATGAAGA
1 GAAAATGAAGA
11389382 GAAAATGAAGA
1 GAAAATGAAGA
11389393 GAA
1 GAA
11389396 TTCTAGATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (11 bp):
GAAAATGAAGA
Found at i:11389709 original size:146 final size:144
Alignment explanation
Indices: 11389504--11389797 Score: 462
Period size: 146 Copynumber: 2.0 Consensus size: 144
11389494 TTGCTGCTTA
* * * *
11389504 AAATATCTCTTTTGGGATTATTTTCACTTTAGGTCCTTCCTCATTTGACAATTGAGCTATTTAAT
1 AAATATCTCCTTTGGGATTATTTACACTTTAGGTCCTTCCTCATTTGAAAATTGAGCTATTCAAT
*
11389569 CCTTCTAGCAACTTTTACACCTTTTTTTTAATTTAGTCCTTTTTATTTAATTAATCACCCAAACG
66 CCTTCTAGCAACTTTTACACC--TTTTTCAATTTAGTCCTTTTTATTTAATTAATCACCCAAACG
11389634 TCAAAATTTTCTAACG
129 TCAAAATTTTCTAACG
* * * *
11389650 AAATATCTCCTTTGGGCTTATTTACACTTTAGGTTCTTTCTCATTTGAAAATTGAGCTATTCGAT
1 AAATATCTCCTTTGGGATTATTTACACTTTAGGTCCTTCCTCATTTGAAAATTGAGCTATTCAAT
* * *
11389715 CCTTCTATCAGCTTTTACACCTTTTTCAATTTAGTCCTTTTTATTTAATTAATCACCCAAACTTC
66 CCTTCTAGCAACTTTTACACCTTTTTCAATTTAGTCCTTTTTATTTAATTAATCACCCAAACGTC
11389780 AAAATTTTCTAACG
131 AAAATTTTCTAACG
11389794 AAAT
1 AAAT
11389798 TTTAATACTA
Statistics
Matches: 136, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
144 60 0.44
146 76 0.56
ACGTcount: A:0.27, C:0.20, G:0.08, T:0.45
Consensus pattern (144 bp):
AAATATCTCCTTTGGGATTATTTACACTTTAGGTCCTTCCTCATTTGAAAATTGAGCTATTCAAT
CCTTCTAGCAACTTTTACACCTTTTTCAATTTAGTCCTTTTTATTTAATTAATCACCCAAACGTC
AAAATTTTCTAACG
Found at i:11391027 original size:17 final size:17
Alignment explanation
Indices: 11390993--11391028 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11390983 TGTTTTAGTA
*
11390993 TAGTTTTTATAGCGTTT
1 TAGTTTTTATAGCATTT
*
11391010 TAGTTTTTATTGCATTT
1 TAGTTTTTATAGCATTT
11391027 TA
1 TA
11391029 TACAATATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.14, T:0.61
Consensus pattern (17 bp):
TAGTTTTTATAGCATTT
Found at i:11402069 original size:13 final size:13
Alignment explanation
Indices: 11402051--11402078 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
11402041 AGTATACTAA
11402051 ACTTAAAGTAGTT
1 ACTTAAAGTAGTT
11402064 ACTTAAAGTAGTT
1 ACTTAAAGTAGTT
11402077 AC
1 AC
11402079 CATTGCCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (13 bp):
ACTTAAAGTAGTT
Found at i:11408013 original size:21 final size:21
Alignment explanation
Indices: 11407987--11408027 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11407977 AGACGAGCGA
* *
11407987 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
11408008 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
11408028 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:11409963 original size:16 final size:16
Alignment explanation
Indices: 11409942--11409972 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11409932 AACATTATGA
*
11409942 TTAATGGCAGACAATT
1 TTAATGGCAAACAATT
11409958 TTAATGGCAAACAAT
1 TTAATGGCAAACAAT
11409973 CCAAGTGGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (16 bp):
TTAATGGCAAACAATT
Found at i:11413576 original size:14 final size:14
Alignment explanation
Indices: 11413557--11413586 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11413547 TTATATCGAG
11413557 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
11413571 ACCAATCCAATTCA
1 ACCAATCCAAATCA
11413585 AC
1 AC
11413587 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:11414292 original size:54 final size:54
Alignment explanation
Indices: 11414210--11414342 Score: 248
Period size: 54 Copynumber: 2.5 Consensus size: 54
11414200 AACCTTACAG
11414210 CGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGT
1 CGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGT
*
11414264 CGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATTGAGTATTGT
1 CGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGT
*
11414318 CGAGATTACCAGTCCAGGCTAAATC
1 CGGGATTACCAGTCCAGGCTAAATC
11414343 TCTTGCAACG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (54 bp):
CGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGT
Found at i:11427939 original size:15 final size:15
Alignment explanation
Indices: 11427919--11427967 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
11427909 GAGAAACTAG
11427919 ATTCAATAAGCTTTA
1 ATTCAATAAGCTTTA
**
11427934 ATTCAAT-ATTTTTA
1 ATTCAATAAGCTTTA
*
11427948 GACTCAATAAGCTTTA
1 -ATTCAATAAGCTTTA
11427964 ATTC
1 ATTC
11427968 CATATTTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 5 0.19
15 16 0.62
16 5 0.19
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (15 bp):
ATTCAATAAGCTTTA
Found at i:11427957 original size:30 final size:30
Alignment explanation
Indices: 11427916--11427976 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
11427906 TATGAGAAAC
*
11427916 TAGATTCAATAAGCTTTAATTCAATATTTT
1 TAGACTCAATAAGCTTTAATTCAATATTTT
*
11427946 TAGACTCAATAAGCTTTAATTCCATATTTT
1 TAGACTCAATAAGCTTTAATTCAATATTTT
11427976 T
1 T
11427977 TTCATCTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.46
Consensus pattern (30 bp):
TAGACTCAATAAGCTTTAATTCAATATTTT
Found at i:11429579 original size:131 final size:129
Alignment explanation
Indices: 11429431--11430031 Score: 562
Period size: 131 Copynumber: 4.6 Consensus size: 129
11429421 AGATTTGATA
*
11429431 TTTGACAATTCGTGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
1 TTTGACAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
** * * *
11429496 CGAATATCATTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTT-AAACGAAGGCGATGTGCGA
65 CGAATATCCCTTCAAAATTTCACTCATGT-TTTTAAAAA-CCCTTAAAACGAAAGCAATGTTCGA
*
11429560 TA
128 TG
* * * *
11429562 TTTGGCAATTCGCGGAATCGTACCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
1 TTTGACAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
* * * * * * **
11429627 CAAATATCCCTTCAAAATTTCACTTAGGTCTTCTAAAAATCCTTTAAAACGAAGGCAATACTC-A
65 CGAATATCCCTTCAAAATTTCACTCATGT-TTTTAAAAA-CCCTTAAAACGAAAGCAATGTTCGA
11429691 GTG
128 -TG
* ** * *
11429694 TTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATC
1 TTTGACAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCGTTTGCTCAAAATAATC
* * *** * * *
11429759 GAATATTCCTTTAGGTTTTCACTCATGTTTATTAAAAACCTTTCAAAAC-AAAG-GATGTTCGAG
66 GAATATCCCTTCAAAATTTCACTCATGTTT-TTAAAAACCCTT-AAAACGAAAGCAATGTTCGAT
11429822 G
129 G
* * * * ** ** * * * **
11429823 TTTGGCGATTTGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCTAAACGATC
1 TTTGACAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCGTTTGCTCAAAATAATC
* ** * * *
11429888 GAAGATCCCTTCGGAATTTCACTCATGTTTTCTAAAAACCCTTTAAAACGAAAGAAATATTCAAT
66 GAATATCCCTTCAAAATTTCACTCATGTTTT-TAAAAACCC-TTAAAACGAAAGCAATGTTCGAT
11429953 G
129 G
* * * *
11429954 TTTGACAATTCGGGGAATAGTACCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAAT
1 TTTGACAATTC-GGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
*
11430019 CGAATATCTCTTC
65 CGAATATCCCTTC
11430032 GGAGTTTCAC
Statistics
Matches: 382, Mismatches: 78, Indels: 19
0.80 0.16 0.04
Matches are distributed among these distances:
128 1 0.00
129 95 0.25
130 17 0.04
131 191 0.50
132 78 0.20
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (129 bp):
TTTGACAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCGTTTGCTCAAAATAATC
GAATATCCCTTCAAAATTTCACTCATGTTTTTAAAAACCCTTAAAACGAAAGCAATGTTCGATG
Found at i:11429958 original size:260 final size:263
Alignment explanation
Indices: 11429431--11430025 Score: 675
Period size: 260 Copynumber: 2.3 Consensus size: 263
11429421 AGATTTGATA
* * *
11429431 TTTGACAATTCGTGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
1 TTTGACAATTCG-GGAATCATGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGCTCAAAATAAT
*
11429496 CGAATA-TCATTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATGTGCGA
65 CGAATATTCATTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAAGCGATGTGCGA
* * * * *
11429560 TATTTGGCAATTCGCGGAATCGTACCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATA
130 GATTTGGCAATTCGCAGAATCGTACCCTAACGTGCTGGGTTGCAATTTCGCATTTGCTCAAAACA
* * * * *
11429625 ATCAAATATCCCTTCAAAATTTCACTTAGGTCTTCTAAAAATCCTTTAAAACGAAGGCAATACTC
195 ATCAAAGATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAACCCTTTAAAACGAAAGAAATACTC
*
11429690 AGTG
260 AATG
** * *
11429694 TTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATC
1 TTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGCTCAAAATAATC
* *** * *
11429759 GAATATTCCTTT-AGGTTTTCACTCATGT-TTATTAAAAA-CCTTTCAAAAC-AAAG-GATGTTC
66 GAATATTCATTTCAAAATTTCACTCATGTCTT-TTAAAAATCCCTT--AAACGAAAGCGATGTGC
* * * * * ** ** * *
11429819 GAGGTTTGGCGATTTG-AGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCTAAA
128 GAGATTTGGCAATTCGCAGAATCGTACCCTAACGTGCTGGGTTGCAATTTCGCATTTGCTCAAAA
* * ** * * *
11429883 CGATCGAAGATCCCTTCGGAATTTCACTCATGTTTTCTAAAAACCCTTTAAAACGAAAGAAATAT
193 CAATCAAAGATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAACCCTTTAAAACGAAAGAAATAC
11429948 TCAATG
258 TCAATG
* *
11429954 TTTGACAATTCGGGGAAT-AGTACCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAA
1 TTTGACAATTC-GGGAATCA-TGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGCTCAAAATAA
11430018 TCGAATAT
64 TCGAATAT
11430026 CTCTTCGGAG
Statistics
Matches: 278, Mismatches: 48, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
260 106 0.38
261 76 0.27
262 75 0.27
263 21 0.08
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (263 bp):
TTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCAATTTCCCGTTTGCTCAAAATAATC
GAATATTCATTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAAGCGATGTGCGAG
ATTTGGCAATTCGCAGAATCGTACCCTAACGTGCTGGGTTGCAATTTCGCATTTGCTCAAAACAA
TCAAAGATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAACCCTTTAAAACGAAAGAAATACTCA
ATG
Found at i:11438459 original size:65 final size:65
Alignment explanation
Indices: 11438384--11438515 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
11438374 TAGGCTCTAA
11438384 CTTGTGCTCTCTTTTCTCAAGACAAATAAAACTAACAACAGCAAATCCAGGGTCTTACTCCACCC
1 CTTGTGCTCTCTTTTCTCAAGACAAATAAAACTAACAACAGCAAATCCAGGGTCTTACTCCACCC
11438449 CTTGTGCTCTCTTTTCTCAAGACAAATAAAACTAACAACAGCAAATCCAGGGTCTTACTCCACCC
1 CTTGTGCTCTCTTTTCTCAAGACAAATAAAACTAACAACAGCAAATCCAGGGTCTTACTCCACCC
11438514 CT
1 CT
11438516 AAAATCAATG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.32, C:0.31, G:0.11, T:0.27
Consensus pattern (65 bp):
CTTGTGCTCTCTTTTCTCAAGACAAATAAAACTAACAACAGCAAATCCAGGGTCTTACTCCACCC
Found at i:11442655 original size:72 final size:74
Alignment explanation
Indices: 11442565--11442707 Score: 186
Period size: 73 Copynumber: 2.0 Consensus size: 74
11442555 TATTTAAGTT
* ** * *
11442565 TTTTTTACTAAATTAATATTTAAATGTTA-TTTTGTGTTAATTTA-CTAAATTAAAT-TAAAAAT
1 TTTTTTACCAAATTAATATTTAAATACTATTTTTATATTAATTTATC-AAATT-AATCTAAAAAT
11442627 ATTATCAAATA
64 ATTATCAAATA
*
11442638 TTTTTTACCAAA-TAATATTTAGATACTATTTTTATATTAATTTATCAAATTAATCTAAAAATAT
1 TTTTTTACCAAATTAATATTTAAATACTATTTTTATATTAATTTATCAAATTAATCTAAAAATAT
11442702 TATCAA
66 TATCAA
11442708 TTTTGGTATA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
72 16 0.26
73 44 0.72
74 1 0.02
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (74 bp):
TTTTTTACCAAATTAATATTTAAATACTATTTTTATATTAATTTATCAAATTAATCTAAAAATAT
TATCAAATA
Found at i:11446080 original size:14 final size:15
Alignment explanation
Indices: 11446061--11446091 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
11446051 AATATCGCGA
11446061 TTTTTAATA-AATAT
1 TTTTTAATATAATAT
11446075 TTTTTAATATAATAT
1 TTTTTAATATAATAT
11446090 TT
1 TT
11446092 AAAATTATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTTTAATATAATAT
Found at i:11458866 original size:43 final size:43
Alignment explanation
Indices: 11458818--11458972 Score: 238
Period size: 43 Copynumber: 3.6 Consensus size: 43
11458808 CCGGCATTAC
11458818 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * * *
11458861 GCCTGCTAGGCACGAAGGCCCAAATACACATTACTGGCACGAT
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
11458904 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
11458947 GCTTGCTAGGCACGAGGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
11458973 TAATACCAGC
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:11459014 original size:38 final size:38
Alignment explanation
Indices: 11458965--11459072 Score: 153
Period size: 38 Copynumber: 2.8 Consensus size: 38
11458955 GGCACGAGGG
* * * *
11458965 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
11459003 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* **
11459041 CCCAGATATTTTACCAGCACGAAGCCTGCGGG
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG
11459073 TCTTTAAGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:11461957 original size:31 final size:30
Alignment explanation
Indices: 11461920--11461983 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
11461910 ACTTAACAAG
11461920 CAAATG-CTTCCAAAAAAATAAAAAAAATTAA
1 CAAATGCCTT-CAAAAAAAT-AAAAAAATTAA
* * *
11461951 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTCAAAAAAATAAAAAAATTAA
11461981 CAA
1 CAA
11461984 TAAGTAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 13 0.45
31 13 0.45
32 3 0.10
ACGTcount: A:0.61, C:0.12, G:0.05, T:0.22
Consensus pattern (30 bp):
CAAATGCCTTCAAAAAAATAAAAAAATTAA
Found at i:11462471 original size:26 final size:27
Alignment explanation
Indices: 11462440--11462525 Score: 88
Period size: 26 Copynumber: 3.3 Consensus size: 27
11462430 GTTAAGAATG
*
11462440 TTATTAAATTTTATTTAATAGTAATTA
1 TTATTAAATTATATTTAATAGTAATTA
* * * *
11462467 -TATTAAAATATAATTAA-ATTATTTA
1 TTATTAAATTATATTTAATAGTAATTA
* *
11462492 TTATTAAATTATATTTAATAAT-ATTC
1 TTATTAAATTATATTTAATAGTAATTA
11462518 TTATTAAA
1 TTATTAAA
11462526 ATTTAGTAAC
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
25 6 0.13
26 39 0.83
27 2 0.04
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (27 bp):
TTATTAAATTATATTTAATAGTAATTA
Found at i:11463414 original size:30 final size:31
Alignment explanation
Indices: 11463380--11463448 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
11463370 TAAAAATATA
*
11463380 ATTTTTAAAG-GATTAAATTAAAATTTTATT
1 ATTTTTAAAGAGATTAAAGTAAAATTTTATT
*
11463410 ATTTTTAAAGAGATTAAAGTATAATTTTATT
1 ATTTTTAAAGAGATTAAAGTAAAATTTTATT
11463441 -TTTATTAA
1 ATTT-TTAA
11463449 TTTAAAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
30 13 0.37
31 22 0.63
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (31 bp):
ATTTTTAAAGAGATTAAAGTAAAATTTTATT
Found at i:11464210 original size:17 final size:16
Alignment explanation
Indices: 11464168--11464210 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
11464158 TTGATCTGTC
11464168 AAATTGAAAATATGCTT
1 AAATT-AAAATATGCTT
11464185 AAATATAAAATATGCTAT
1 AAAT-TAAAATATGCT-T
*
11464203 GAATTAAA
1 AAATTAAA
11464211 TAATAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (16 bp):
AAATTAAAATATGCTT
Found at i:11492473 original size:54 final size:54
Alignment explanation
Indices: 11492402--11492510 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
11492392 AGGAAAAAAG
11492402 AAAAGATCAAGCCCGGATAAACCTTAATTGATTAAAAAAAGTAAGGAATCAATC
1 AAAAGATCAAGCCCGGATAAACCTTAATTGATTAAAAAAAGTAAGGAATCAATC
11492456 AAAAGATCAAGCCCGGATAAACCTTAATTGATTAAAAAAAGTAAGGAATCAATC
1 AAAAGATCAAGCCCGGATAAACCTTAATTGATTAAAAAAAGTAAGGAATCAATC
11492510 A
1 A
11492511 CTCAAGATCG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (54 bp):
AAAAGATCAAGCCCGGATAAACCTTAATTGATTAAAAAAAGTAAGGAATCAATC
Found at i:11500784 original size:232 final size:235
Alignment explanation
Indices: 11500334--11500816 Score: 839
Period size: 232 Copynumber: 2.1 Consensus size: 235
11500324 CCATATCAAT
* *
11500334 AATAC-AAAAGTTCATCTATGAAAATTAGCTAGAGTACAGTAACAGATAAAAACTAATTACATAA
1 AATACTAAAACTTAATCTATGAAAATTAGCTAGAGTACAGTAACAGATAAAAACTAATTACATAA
11500398 AAATCAGTCTAAAAGAAGAGAGAAAAAGAAAAAGGAGTAAAACACACCAGTCAAAATTCTACTTT
66 AAATCAGTCTAAAAGAAGAGAGAAAAAGAAAAAGGAGTAAAACACACCAGTCAAAATTCTACTTT
11500463 TCACTAAATATTTTTTTTCTTAAAAATGGGGAAAGGGGAGGACTTCCAGCGATGTGCAGAAAATC
131 TCACTAAATATTTTTTTTCTTAAAAATGGGGAAAGGGGAGGACTTCCAGCGATGTGCAGAAAATC
*
11500528 TTCAGATGTTGCTACTGCCGACAAGTTCTTACAATATGTA
196 TTCACATGTTGCTACTGCCGACAAGTTCTTACAATATGTA
* * **
11500568 AATACTAAAATTTAATCTATGAGAATTAGCTAGAGTACAGTATTAGATAAAAACTAATTACATAA
1 AATACTAAAACTTAATCTATGAAAATTAGCTAGAGTACAGTAACAGATAAAAACTAATTACATAA
11500633 AAATCAGTCTAAAAG-A-AGAGAAAAAGAAAAAGGAGTAAAACACACCAGTCAAAATTCTACTTT
66 AAATCAGTCTAAAAGAAGAGAGAAAAAGAAAAAGGAGTAAAACACACCAGTCAAAATTCTACTTT
* * *
11500696 TCACTAAATA-TTTTTTTCTTAAATATGGGGGAAGGGGAGGACTTCCAGCGATGTGTAGAAAATC
131 TCACTAAATATTTTTTTTCTTAAAAATGGGGAAAGGGGAGGACTTCCAGCGATGTGCAGAAAATC
*
11500760 TTCACATGTTGCTACTGCCGACAAGTTCTTCCAATATGTA
196 TTCACATGTTGCTACTGCCGACAAGTTCTTACAATATGTA
11500800 AATACTAAAACTTAATC
1 AATACTAAAACTTAATC
11500817 GTGAAGTATA
Statistics
Matches: 237, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
232 105 0.44
233 57 0.24
234 6 0.03
235 69 0.29
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (235 bp):
AATACTAAAACTTAATCTATGAAAATTAGCTAGAGTACAGTAACAGATAAAAACTAATTACATAA
AAATCAGTCTAAAAGAAGAGAGAAAAAGAAAAAGGAGTAAAACACACCAGTCAAAATTCTACTTT
TCACTAAATATTTTTTTTCTTAAAAATGGGGAAAGGGGAGGACTTCCAGCGATGTGCAGAAAATC
TTCACATGTTGCTACTGCCGACAAGTTCTTACAATATGTA
Found at i:11503343 original size:15 final size:15
Alignment explanation
Indices: 11503323--11503353 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
11503313 AGGTCTCTCG
11503323 CTTCTCTATATGTTT
1 CTTCTCTATATGTTT
11503338 CTTCTCTATATGTTT
1 CTTCTCTATATGTTT
11503353 C
1 C
11503354 AAATTGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.23, G:0.06, T:0.58
Consensus pattern (15 bp):
CTTCTCTATATGTTT
Found at i:11504654 original size:68 final size:70
Alignment explanation
Indices: 11504563--11504692 Score: 171
Period size: 68 Copynumber: 1.9 Consensus size: 70
11504553 TAAAAATATT
* *
11504563 AAATTTTATATAAACTTAAAAAAA-ATATGTATAAAA-TCAT-AACAATTTATAAATATTATAAA
1 AAATTTTATATAAACTTAAAAAAATA-AT-AAAAAAATTCATCAA-AATTTATAAATATTATAAA
11504625 CCCTATAA
63 CCCTATAA
*
11504633 AAATTTTA-ATAAA-TTACAAAAATAATAAAAAAATTCATCAAAATTTATAAATATTATAAA
1 AAATTTTATATAAACTTAAAAAAATAATAAAAAAATTCATCAAAATTTATAAATATTATAAA
11504693 AACTTATAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
67 5 0.09
68 33 0.61
69 8 0.15
70 8 0.15
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.34
Consensus pattern (70 bp):
AAATTTTATATAAACTTAAAAAAATAATAAAAAAATTCATCAAAATTTATAAATATTATAAACCC
TATAA
Found at i:11504701 original size:10 final size:9
Alignment explanation
Indices: 11504595--11504702 Score: 54
Period size: 9 Copynumber: 11.2 Consensus size: 9
11504585 AAATATGTAT
*
11504595 AAAATCATA
1 AAAATTATA
*
11504604 ACAATTTATA
1 A-AAATTATA
*
11504614 AATATTATA
1 AAAATTATA
***
11504623 AACCCTATA
1 AAAATTATA
*
11504632 AAAATTTTA
1 AAAATTATA
*
11504641 ATAAATTACA
1 A-AAATTATA
*
11504651 AAAATAATAAA
1 AAAAT--TATA
11504662 AAAATTCATCA
1 AAAATT-AT-A
*
11504673 AAATTTATA
1 AAAATTATA
*
11504682 AATATTATA
1 AAAATTATA
11504691 AAAACTTATA
1 AAAA-TTATA
11504701 AA
1 AA
11504703 TATAAAAAAA
Statistics
Matches: 73, Mismatches: 19, Indels: 13
0.70 0.18 0.12
Matches are distributed among these distances:
9 35 0.48
10 24 0.33
11 14 0.19
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:11504712 original size:19 final size:19
Alignment explanation
Indices: 11504672--11504713 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
11504662 AAAATTCATC
* * *
11504672 AAAATTTATAAATATTATA
1 AAAACTTATAAATATAAAA
11504691 AAAACTTATAAATATAAAA
1 AAAACTTATAAATATAAAA
11504710 AAAA
1 AAAA
11504714 TCATACTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAACTTATAAATATAAAA
Found at i:11519548 original size:21 final size:21
Alignment explanation
Indices: 11519507--11519548 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
11519497 CTTCCTCCAT
*
11519507 CTCCTCTTCATCAATTTCTTC
1 CTCCTCTTCATCAATTACTTC
11519528 CTCCTCTTCATC-ATATACTTC
1 CTCCTCTTCATCAAT-TACTTC
11519549 TTCTTCTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.17, C:0.38, G:0.00, T:0.45
Consensus pattern (21 bp):
CTCCTCTTCATCAATTACTTC
Found at i:11520991 original size:322 final size:322
Alignment explanation
Indices: 11520398--11521040 Score: 1007
Period size: 322 Copynumber: 2.0 Consensus size: 322
11520388 AAATATTAAT
* * **
11520398 TAATTTTTAATCTCAACGTTTATGTAGCAAACATTAAATTACGAAATGTGAACAGTTTAATAAAA
1 TAATTCTTAATCTCAACGTTTATGTAGCAAACATTAAATTACGAAATGTAAACAACTTAATAAAA
* * * *
11520463 AATATTAAAATAAACGTCAATAGAAAATTTTATTAAATAAAAGGTTGAATAACACCTTATTAATT
66 AATATTAAAATAAACGACAACAAAAAATTTTATTAAATAAAAAGTTGAATAACACCTTATTAATT
* * * *
11520528 TTATTATATATCAAAGGTACACACGAAATGTAAAACAAAATTTCGAGTTAAGGTTATTGCACTTT
131 CTATCATATATCAAAGGGACACACGAAATATAAAACAAAATTTCGAGTTAAGGTTATTGCACTTT
* * *
11520593 GTGATAGCAGAAGAATGCAAGTAGTTTTCAAGAAATAATATGAAAACTTGGAAAAGGAAAACAGT
196 GTGATAGCAGAAGAATGCAAGTAGTTTTCAAGAAATAATATGAAAAATTAGAAAAGAAAAACAGT
* * *
11520658 TGATGGATATAAGAAGAAATTTGATTAAACGAGGAAGTTTTTACTAACCGAAATTAAGGTTC
261 TAATAGATATAAGAAAAAATTTGATTAAACGAGGAAGTTTTTACTAACCGAAATTAAGGTTC
* *
11520720 TAATTCTTAATCTCAACGTTTATGTAGTAAACATTAAATTGCGAAATGTAAACAACTTAATAAAA
1 TAATTCTTAATCTCAACGTTTATGTAGCAAACATTAAATTACGAAATGTAAACAACTTAATAAAA
*
11520785 AATATTGAAATAAACGACAACAAAAAATTTTATTAAATAAAAAGTTGAATAACACCTTATTAATT
66 AATATTAAAATAAACGACAACAAAAAATTTTATTAAATAAAAAGTTGAATAACACCTTATTAATT
* * *
11520850 CTATCATATATCAAAGGGACACACGAAATATAGAATAAAATTTCGAGTTAAGGTTATTGTACTTT
131 CTATCATATATCAAAGGGACACACGAAATATAAAACAAAATTTCGAGTTAAGGTTATTGCACTTT
** * *
11520915 GTGATAGCAGGGGAATTCAAGTAGTTTTCAAGAAATAATATGAAAAATTAGAAAATAAAAACAGT
196 GTGATAGCAGAAGAATGCAAGTAGTTTTCAAGAAATAATATGAAAAATTAGAAAAGAAAAACAGT
* * *
11520980 TAATAGATATAAGAAAAAATTTGATTAAATGAGGAAGTTTTTACTTACCGGAATTAAGGTT
261 TAATAGATATAAGAAAAAATTTGATTAAACGAGGAAGTTTTTACTAACCGAAATTAAGGTT
11521041 GGCGCGGCAT
Statistics
Matches: 290, Mismatches: 31, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
322 290 1.00
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.31
Consensus pattern (322 bp):
TAATTCTTAATCTCAACGTTTATGTAGCAAACATTAAATTACGAAATGTAAACAACTTAATAAAA
AATATTAAAATAAACGACAACAAAAAATTTTATTAAATAAAAAGTTGAATAACACCTTATTAATT
CTATCATATATCAAAGGGACACACGAAATATAAAACAAAATTTCGAGTTAAGGTTATTGCACTTT
GTGATAGCAGAAGAATGCAAGTAGTTTTCAAGAAATAATATGAAAAATTAGAAAAGAAAAACAGT
TAATAGATATAAGAAAAAATTTGATTAAACGAGGAAGTTTTTACTAACCGAAATTAAGGTTC
Found at i:11522590 original size:91 final size:90
Alignment explanation
Indices: 11522435--11522612 Score: 338
Period size: 91 Copynumber: 2.0 Consensus size: 90
11522425 TCTCAACCGT
*
11522435 GACGTCTTGTCGTAGATACAATTGAAGTCCCCAATGTGTTTTAGACGGAACAGCTTCAGTTCACT
1 GACGTCCTGTCGTAGATACAATTGAAGTCCCCAATGTGTTTTAGACGGAACAGCTTCAGTTCAC-
11522500 TTTTTTATTTAAATTATCATTCTCTG
65 TTTTTTATTTAAATTATCATTCTCTG
11522526 GACGTCCTGTCGTAGATACAATTGAAGTCCCCAATGTGTTTTAGACGGAACAGCTTCAGTTCACT
1 GACGTCCTGTCGTAGATACAATTGAAGTCCCCAATGTGTTTTAGACGGAACAGCTTCAGTTCACT
11522591 TTTTTATTTAAATTATCATTCT
66 TTTTTATTTAAATTATCATTCT
11522613 TTTAAGAGAA
Statistics
Matches: 86, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
90 23 0.27
91 63 0.73
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (90 bp):
GACGTCCTGTCGTAGATACAATTGAAGTCCCCAATGTGTTTTAGACGGAACAGCTTCAGTTCACT
TTTTTATTTAAATTATCATTCTCTG
Found at i:11524580 original size:21 final size:21
Alignment explanation
Indices: 11524554--11524598 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
11524544 TCAAGTACAC
11524554 CATTCACAAGAGGCTCCTCAT
1 CATTCACAAGAGGCTCCTCAT
*
11524575 CATTCATAAGAGGCTCCTCAT
1 CATTCACAAGAGGCTCCTCAT
11524596 CAT
1 CAT
11524599 CAATTTGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (21 bp):
CATTCACAAGAGGCTCCTCAT
Found at i:11536042 original size:23 final size:23
Alignment explanation
Indices: 11536012--11536066 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
11536002 AAATATAACA
11536012 AAATTAACAAATTCCTTTAAAAT
1 AAATTAACAAATTCCTTTAAAAT
11536035 AAATTAACAAATTCCTTTAAAAT
1 AAATTAACAAATTCCTTTAAAAT
11536058 -AA-TAACAAA
1 AAATTAACAAA
11536067 ATTAATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 7 0.22
22 2 0.06
23 23 0.72
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (23 bp):
AAATTAACAAATTCCTTTAAAAT
Found at i:11539659 original size:17 final size:17
Alignment explanation
Indices: 11539637--11539671 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11539627 AACTATTCAA
11539637 TTTTTTTTG-CGTAATGT
1 TTTTTTTTGTC-TAATGT
11539654 TTTTTTTTGTCTAATGT
1 TTTTTTTTGTCTAATGT
11539671 T
1 T
11539672 ACATTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.94
18 1 0.06
ACGTcount: A:0.11, C:0.06, G:0.14, T:0.69
Consensus pattern (17 bp):
TTTTTTTTGTCTAATGT
Found at i:11543634 original size:6 final size:6
Alignment explanation
Indices: 11543623--11543647 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
11543613 ACTTTCACAT
11543623 ATATAA ATATAA ATATAA ATATAA A
1 ATATAA ATATAA ATATAA ATATAA A
11543648 CAAAATAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATATAA
Found at i:11545100 original size:2 final size:2
Alignment explanation
Indices: 11545093--11545119 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11545083 TCGGCCTGCT
11545093 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
11545120 TTATTTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:11546959 original size:14 final size:15
Alignment explanation
Indices: 11546934--11546962 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
11546924 GCAAGCCTTT
11546934 TTAATAATAAAAATA
1 TTAATAATAAAAATA
11546949 TTAAT-ATAAAAATA
1 TTAATAATAAAAATA
11546963 AAATAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TTAATAATAAAAATA
Found at i:11548575 original size:3 final size:3
Alignment explanation
Indices: 11548567--11548597 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
11548557 TAGAATAATC
11548567 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
11548598 TTTTTTTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:11551193 original size:107 final size:108
Alignment explanation
Indices: 11550994--11551207 Score: 403
Period size: 107 Copynumber: 2.0 Consensus size: 108
11550984 AAAAACACGT
11550994 CAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTTA
1 CAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTTA
11551059 AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAA
66 AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAA
*
11551102 CAAAAATTTTAT-AGAGTAATTAACAAAAATTTTAATACAATTTTGTTTGAAATTTTATTATTTA
1 CAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTTA
*
11551166 AAACTTATTCTAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
11551208 TTTTTTGTTT
Statistics
Matches: 104, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
107 92 0.88
108 12 0.12
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.43
Consensus pattern (108 bp):
CAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTTA
AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAAA
Found at i:11557741 original size:23 final size:22
Alignment explanation
Indices: 11557702--11557746 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
11557692 TATTAAATAT
*
11557702 AAAATATTTTAGTAATATGAAAA
1 AAAATATTTTAGAAATAT-AAAA
11557725 AAAATCATTTTA-AAATATAAAA
1 AAAAT-ATTTTAGAAATATAAAA
11557747 GTAACTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 10 0.50
24 6 0.30
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (22 bp):
AAAATATTTTAGAAATATAAAA
Found at i:11559328 original size:22 final size:22
Alignment explanation
Indices: 11559292--11559336 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
11559282 CAAATTATAT
11559292 AATTTTTTCTACTTTAATACTTA
1 AATTTTTTCTACTTTAATA-TTA
* *
11559315 AATTTTTT-TTCTTTTATATTA
1 AATTTTTTCTACTTTAATATTA
11559336 A
1 A
11559337 TACTTCAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 8 0.40
23 8 0.40
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (22 bp):
AATTTTTTCTACTTTAATATTA
Found at i:11563451 original size:12 final size:12
Alignment explanation
Indices: 11563436--11563466 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
11563426 TTCTCTTTTA
11563436 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
11563448 TTTTTCTTTCTC
1 TTTTTCTTTCCC
11563460 TTTTTCT
1 TTTTTCT
11563467 CCCCAGTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:11563567 original size:16 final size:16
Alignment explanation
Indices: 11563546--11563576 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11563536 TTTATTATTT
11563546 TATTAACATAATATAA
1 TATTAACATAATATAA
*
11563562 TATTAATATAATATA
1 TATTAACATAATATA
11563577 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:11565218 original size:30 final size:31
Alignment explanation
Indices: 11565192--11565250 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
11565182 GTAAATACTC
*
11565192 AAAATTT-AAGGGGTTAA-AGTGTAAATATAA
1 AAAATTTCAA-GGGCTAATAGTGTAAATATAA
11565222 AAAATTTCAAGGGCTAATAGTGTAAATAT
1 AAAATTTCAAGGGCTAATAGTGTAAATAT
11565251 TTTAAAGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.47, C:0.03, G:0.19, T:0.31
Consensus pattern (31 bp):
AAAATTTCAAGGGCTAATAGTGTAAATATAA
Found at i:11565481 original size:28 final size:28
Alignment explanation
Indices: 11565449--11565503 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
11565439 GATGTTGATG
11565449 ATATT-TTATAAT-TATTTAATTAAGATAA
1 ATATTATTATAATAT-TTTAATT-AGATAA
*
11565477 ATATTATTTTAATATTTTAATTAGATA
1 ATATTATTATAATATTTTAATTAGATA
11565504 TTTTACTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 10 0.42
29 13 0.54
30 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (28 bp):
ATATTATTATAATATTTTAATTAGATAA
Found at i:11567270 original size:40 final size:40
Alignment explanation
Indices: 11567226--11567322 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
11567216 ATAATACCTC
* *
11567226 AAAGTGGATAGGATTTGTTCTTGATTCACTATGGTAATTT
1 AAAGTGGATAGGATTTGTTCTTAATTCACTATGGTAACTT
** *
11567266 AAAGTAAATAGGATTTATTCTTAATTCACTATGGTAACTT
1 AAAGTGGATAGGATTTGTTCTTAATTCACTATGGTAACTT
* *
11567306 AAGGCGGATAGGATTTG
1 AAAGTGGATAGGATTTG
11567323 ACCTAAAAAG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (40 bp):
AAAGTGGATAGGATTTGTTCTTAATTCACTATGGTAACTT
Found at i:11567735 original size:21 final size:21
Alignment explanation
Indices: 11567689--11567750 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
11567679 CGAATATGCC
11567689 AACAGAAGCTCG-AA-AGCTA
1 AACAGAAGCTCGTAAGAGCTA
* *
11567708 AATAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTA
*
11567729 AACAGAAGTTCGTAAGAGCTA
1 AACAGAAGCTCGTAAGAGCTA
11567750 A
1 A
11567751 TCCACCCAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
19 11 0.31
20 2 0.06
21 23 0.64
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTA
Found at i:11584118 original size:12 final size:12
Alignment explanation
Indices: 11584101--11584125 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11584091 ACGGATTGCG
11584101 AAGAAGAAGAAA
1 AAGAAGAAGAAA
11584113 AAGAAGAAGAAA
1 AAGAAGAAGAAA
11584125 A
1 A
11584126 CAGTAGCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAGAAGAAGAAA
Found at i:11586206 original size:13 final size:13
Alignment explanation
Indices: 11586188--11586213 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11586178 TATAGTTGGT
11586188 TCTGAGATTGAGA
1 TCTGAGATTGAGA
11586201 TCTGAGATTGAGA
1 TCTGAGATTGAGA
11586214 CACCAATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
TCTGAGATTGAGA
Found at i:11590360 original size:16 final size:16
Alignment explanation
Indices: 11590320--11590353 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
11590310 AATATAAATA
11590320 TATATTA-ATAACTTT
1 TATATTATATAACTTT
*
11590335 TATATTATATAATTTT
1 TATATTATATAACTTT
11590351 TAT
1 TAT
11590354 CATATATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (16 bp):
TATATTATATAACTTT
Found at i:11592827 original size:15 final size:16
Alignment explanation
Indices: 11592807--11592840 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
11592797 AGTTGAACAT
11592807 TAAAGTTAATTGC-CC
1 TAAAGTTAATTGCACC
11592822 TAAAGTTAATTGCACC
1 TAAAGTTAATTGCACC
11592838 TAA
1 TAA
11592841 TTTTTTTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (16 bp):
TAAAGTTAATTGCACC
Found at i:11592936 original size:19 final size:18
Alignment explanation
Indices: 11592913--11592965 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
11592903 AAAAAAATAA
11592913 ATAAATATTATAAAAAGT
1 ATAAATATTATAAAAAGT
*
11592931 ATTAAATTTTAATAAAAAAGT
1 A-TAAATATT-AT-AAAAAGT
11592952 A-AAATA-TATAAAAA
1 ATAAATATTATAAAAA
11592966 TCATAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
16 5 0.17
17 2 0.07
18 2 0.07
19 11 0.37
20 2 0.07
21 8 0.27
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (18 bp):
ATAAATATTATAAAAAGT
Found at i:11592975 original size:28 final size:28
Alignment explanation
Indices: 11592944--11593023 Score: 99
Period size: 28 Copynumber: 2.8 Consensus size: 28
11592934 AAATTTTAAT
*
11592944 AAAAAAGTAAAATA-TATAAAAATCATA
1 AAAAAAGTAAAAAATTATAAAAATCATA
*
11592971 AAAAATGTAAAAAATTATAAAAATCATA
1 AAAAAAGTAAAAAATTATAAAAATCATA
* *
11592999 AAAAAATTATAAAATGTATCAAAAA
1 AAAAAAGTAAAAAAT-TAT-AAAAA
11593024 GGTCCTTTAG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 12 0.27
28 25 0.56
29 3 0.07
30 5 0.11
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (28 bp):
AAAAAAGTAAAAAATTATAAAAATCATA
Found at i:11593012 original size:9 final size:10
Alignment explanation
Indices: 11592952--11593012 Score: 58
Period size: 9 Copynumber: 6.3 Consensus size: 10
11592942 ATAAAAAAGT
11592952 AAAATATATA
1 AAAATATATA
11592962 AAAATCATA-A
1 AAAAT-ATATA
*
11592972 AAAATGTA-A
1 AAAATATATA
11592981 AAAAT-TATA
1 AAAATATATA
*
11592990 AAAATCATAAA
1 AAAAT-ATATA
11593001 AAAAT-TATA
1 AAAATATATA
11593010 AAA
1 AAA
11593013 TGTATCAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
8 2 0.05
9 20 0.45
10 11 0.25
11 11 0.25
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (10 bp):
AAAATATATA
Found at i:11593183 original size:9 final size:9
Alignment explanation
Indices: 11593135--11593184 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
11593125 ACATGTTTTA
11593135 AAAATTAAT
1 AAAATTAAT
11593144 AAAA--AAT
1 AAAATTAAT
*
11593151 AAAATCAAT
1 AAAATTAAT
*
11593160 AAAAGTTATAA
1 AAAA-TTA-AT
11593171 AAAATTAAT
1 AAAATTAAT
11593180 AAAAT
1 AAAAT
11593185 GCTTCTTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
7 7 0.21
9 17 0.50
10 5 0.15
11 5 0.15
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (9 bp):
AAAATTAAT
Found at i:11593406 original size:28 final size:28
Alignment explanation
Indices: 11593359--11593429 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
11593349 CTTTATTGTA
* * *
11593359 TTTATAATTTTTAATAAAAATTAAATATT
1 TTTATATTTTTTATTAAAAATT-AATAAT
*
11593388 TTTATATTTTTTATTAAAAATTATTAAT
1 TTTATATTTTTTATTAAAAATTAATAAT
11593416 TTTAT-TTTTTTATT
1 TTTATATTTTTTATT
11593430 TTTTATTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 9 0.24
28 9 0.24
29 20 0.53
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (28 bp):
TTTATATTTTTTATTAAAAATTAATAAT
Found at i:11593435 original size:15 final size:16
Alignment explanation
Indices: 11593415--11593449 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
11593405 AAATTATTAA
11593415 TTTTATTTTTTTAT-T
1 TTTTATTTTTTTATCT
11593430 TTTTATTTTTTTATCT
1 TTTTATTTTTTTATCT
11593446 TTTT
1 TTTT
11593450 TGCCACGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (16 bp):
TTTTATTTTTTTATCT
Found at i:11594299 original size:5 final size:5
Alignment explanation
Indices: 11594289--11594322 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
11594279 ATTCAAAATT
11594289 TAAAA TAAAA TAAAA TAAAA T-AAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
11594323 ACTAATCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:11594315 original size:9 final size:9
Alignment explanation
Indices: 11594291--11594321 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
11594281 TCAAAATTTA
11594291 AAATAAAAT
1 AAATAAAAT
11594300 AAAATAAAAT
1 -AAATAAAAT
11594310 AAATAAAAT
1 AAATAAAAT
11594319 AAA
1 AAA
11594322 AACTAATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:11594315 original size:14 final size:15
Alignment explanation
Indices: 11594289--11594322 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
11594279 ATTCAAAATT
11594289 TAAAATAAAATAAAA
1 TAAAATAAAATAAAA
11594304 TAAAAT-AAATAAAA
1 TAAAATAAAATAAAA
11594318 TAAAA
1 TAAAA
11594323 ACTAATCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAAATAAAATAAAA
Found at i:11596687 original size:14 final size:14
Alignment explanation
Indices: 11596668--11596696 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
11596658 AAAATAGGAA
11596668 CGGACTCAAAGGGT
1 CGGACTCAAAGGGT
11596682 CGGACTCAAAGGGT
1 CGGACTCAAAGGGT
11596696 C
1 C
11596697 ACCCTGTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.24, G:0.34, T:0.14
Consensus pattern (14 bp):
CGGACTCAAAGGGT
Found at i:11612171 original size:30 final size:32
Alignment explanation
Indices: 11612108--11612175 Score: 88
Period size: 30 Copynumber: 2.2 Consensus size: 32
11612098 AAGAAATAAT
* * *
11612108 AATTT-AATTCTTTTTAAAAGGTTTAAGACCA
1 AATTTAAATTCTTTTGAAAAGGTTGAAGAACA
11612139 AATTTAAATT-TTTTGAAAA-GTTGAAGAACA
1 AATTTAAATTCTTTTGAAAAGGTTGAAGAACA
11612169 AATTTAA
1 AATTTAA
11612176 TTAGAAAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 16 0.48
31 13 0.39
32 4 0.12
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (32 bp):
AATTTAAATTCTTTTGAAAAGGTTGAAGAACA
Done.