Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 305 of 325
Found at i:96849845 original size:24 final size:23
Alignment explanation
Indices: 96849809--96849921 Score: 104
Period size: 24 Copynumber: 4.8 Consensus size: 23
96849799 ATTATACTCC
* *
96849809 ATATTATGCATATATATTAATATT
1 ATATTATGTATATATATT-TTATT
*
96849833 ATATTATGTATAT-TATTTTTTT
1 ATATTATGTATATATATTTTATT
* * *
96849855 AAATATTATATATATGTATTTTTTTAT
1 --ATATTATGTATATATA-TTTTAT-T
*
96849882 ATATTATGTATATAT-TTTTAAT
1 ATATTATGTATATATATTTTATT
96849904 ATATTATGTATATATATT
1 ATATTATGTATATATATT
96849922 ATGTACATAC
Statistics
Matches: 75, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
22 19 0.25
23 10 0.13
24 24 0.32
25 15 0.20
26 6 0.08
27 1 0.01
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.58
Consensus pattern (23 bp):
ATATTATGTATATATATTTTATT
Found at i:96849880 original size:25 final size:24
Alignment explanation
Indices: 96849833--96849921 Score: 112
Period size: 25 Copynumber: 3.7 Consensus size: 24
96849823 TATTAATATT
96849833 ATATTATGTATATTATTTTTTTAA
1 ATATTATGTATATTATTTTTTTAA
* *
96849857 ATATTATATATATGTATTTTTTTAT
1 ATATTATGTATAT-TATTTTTTTAA
96849882 ATATTATGTATA-TA--TTTTTAA
1 ATATTATGTATATTATTTTTTTAA
96849903 TATATTATGTATATATATT
1 -ATATTATGTATAT-TATT
96849922 ATGTACATAC
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
21 6 0.11
22 12 0.22
23 2 0.04
24 14 0.25
25 21 0.38
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (24 bp):
ATATTATGTATATTATTTTTTTAA
Found at i:96849911 original size:22 final size:22
Alignment explanation
Indices: 96849809--96849918 Score: 96
Period size: 22 Copynumber: 4.7 Consensus size: 22
96849799 ATTATACTCC
** *
96849809 ATATTATGCATATATATTAATATT
1 ATATTATG--TATATATTTTTAAT
96849833 ATATTATGTATATTATTTTTTTAA-
1 ATATTATGTATA-TA--TTTTTAAT
* *
96849857 ATATTATATATATGTATTTTTTTAT
1 ATATTATGTATA--TA-TTTTTAAT
96849882 ATATTATGTATATATTTTTAAT
1 ATATTATGTATATATTTTTAAT
96849904 ATATTATGTATATAT
1 ATATTATGTATATAT
96849919 ATTATGTACA
Statistics
Matches: 73, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
22 26 0.36
23 4 0.05
24 26 0.36
25 17 0.23
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.58
Consensus pattern (22 bp):
ATATTATGTATATATTTTTAAT
Found at i:96849970 original size:21 final size:23
Alignment explanation
Indices: 96849913--96849976 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
96849903 TATATTATGT
* *
96849913 ATATATATTATGTACATACTT-ATA
1 ATAT-TATTATGTATATA-TTCTTA
*
96849937 ATATTATTATGTATTTATTCTTA
1 ATATTATTATGTATATATTCTTA
96849960 ATA-TA-TATGTATATATT
1 ATATTATTATGTATATATT
96849977 TATGTAGTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 11 0.31
22 4 0.11
23 16 0.46
24 4 0.11
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.53
Consensus pattern (23 bp):
ATATTATTATGTATATATTCTTA
Found at i:96850083 original size:24 final size:24
Alignment explanation
Indices: 96850029--96850124 Score: 86
Period size: 25 Copynumber: 3.8 Consensus size: 24
96850019 CTAATATGTA
96850029 TATATTATGTAAATATTTTTAATAC
1 TATATTATGTAAATATTTTT-ATAC
*
96850054 TATATTATGTATATATTTTT-TAC
1 TATATTATGTAAATATTTTTATAC
* * *
96850077 ATGTATTATGTACATATTTTCAATAAC
1 -TATATTATGTAAATATTTT-TAT-AC
*
96850104 TATATCATATGTATATATTTT
1 TATAT--TATGTAAATATTTT
96850125 ATGTACATAC
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
23 3 0.05
24 17 0.29
25 19 0.32
26 5 0.08
27 2 0.03
28 13 0.22
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.53
Consensus pattern (24 bp):
TATATTATGTAAATATTTTTATAC
Found at i:96850086 original size:197 final size:193
Alignment explanation
Indices: 96849832--96850513 Score: 604
Period size: 203 Copynumber: 3.3 Consensus size: 193
96849822 ATATTAATAT
* * * * *
96849832 TATATTATGTATATTATTTTTTTAAATATTATATATATGTATTTTTTTATATATTATGTATATAT
1 TATATTATGTA-AATATTTTTATATATATTATGTATA--TATTTTTATATATATTATGTATATAT
* *
96849897 TTTTAATATATTATGTATATATATTATGTACATACTTATAATATTATTATGTATTTATTCTTAAT
63 TTTTAATATATTATGTATATATTTTATGTACATACTTATAATATTATTATGTATTTATTATTAAT
* *
96849962 ATATATGTATATATTTATGTAGTATTATTAATAGTTGCTTTTAATATTA-TATTATTTCTAATAT
128 ATATAT-TATATATTTATGTA-TATTATTAATAGTTGTTTTTAACATTATTATTATTTCTAATAT
96850026 GTA
191 GTA
* * *
96850029 TATATTATGTAAATATTTTTAATACTATATTATGTATATATTTTTTACATGTATTATGTACATAT
1 TATATTATGTAAATATTTTT-ATA-TATATTATGTATATA-TTTTTATATATATTATGTATATAT
*
96850094 TTTCAATAACTATATCATATGTATATATTTTATGTACATACTTTTAATATTATTATGTATTTATT
63 TTT---TAA-TATAT--TATGTATATATTTTATGTACATACTTATAATATTATTATGTATTTATT
* * * * * *
96850159 TTTAATATATA-TATGTATATATTTATATTATTAATAGTTATTTTTAACATTATTATCATTTCTA
122 ATTAATATATATTATATATTTATGTATATTATTAATAGTTGTTTTTAACATTATTATTATTTCTA
96850223 ATA--TA
187 ATATGTA
* * * * *
96850228 TATGTGTATCGTATATGTTTTTATATATATTATGTATATATCTTTAGTAT-TATTA-GTTATATG
1 TATAT-TAT-GTAAATATTTTTATATATATTATGTATATATTTTTA-TATATATTATG-TATATA
* * *
96850291 TTTTTTATACTATTTCATGTATATATTTTATATTATCCTTATTA-TTATTAATATTAGTATGTGT
62 TTTTTAATA-TA-TT-ATGTATATATTTTAT-GTA--C--A-TACTTA-TAATATTA-T-TATG-
96850355 TTTATTATAAGTATATATCTTTAATATATATGTATATATTTATGTAATATTATTAATAGTTGTTT
114 --TA-T-T---TAT-TA---TTAATATATAT-TATATATTTATGT-ATATTATTAATAGTTG-TT
96850420 TTTAAAACATTATTATTATTTCTAATATGTA
165 TTT--AACATTATTATTATTTCTAATATGTA
* * * *
96850451 TATACTATGTAAATATTTTAATACTATATTATGTATACATTTTTATATATATTACGTATATAT
1 TATATTATGTAAATATTTTTATA-TATATTATGTATATATTTTTATATATATTATGTATATAT
96850514 ATCTTTTTAA
Statistics
Matches: 393, Mismatches: 43, Indels: 73
0.77 0.08 0.14
Matches are distributed among these distances:
194 3 0.01
195 19 0.05
196 13 0.03
197 37 0.09
198 30 0.08
199 23 0.06
200 36 0.09
201 49 0.12
202 1 0.00
203 59 0.15
206 2 0.01
207 1 0.00
208 1 0.00
211 3 0.01
212 1 0.00
215 10 0.03
217 10 0.03
218 15 0.04
219 5 0.01
221 36 0.09
222 33 0.08
223 6 0.02
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.55
Consensus pattern (193 bp):
TATATTATGTAAATATTTTTATATATATTATGTATATATTTTTATATATATTATGTATATATTTT
TAATATATTATGTATATATTTTATGTACATACTTATAATATTATTATGTATTTATTATTAATATA
TATTATATATTTATGTATATTATTAATAGTTGTTTTTAACATTATTATTATTTCTAATATGTA
Found at i:96850150 original size:88 final size:87
Alignment explanation
Indices: 96850022--96850182 Score: 220
Period size: 88 Copynumber: 1.8 Consensus size: 87
96850012 ATTATTTCTA
* *
96850022 ATATGTATATATTATGTAAATATTTTTAATACTATATTATGTATATATTTTTTACATGTAT-TAT
1 ATATGTATATATTATGTAAATACTTTTAATACTATATTATGTATATA-TTTTTA-ATATATATAT
96850086 GTACATATTTTCAATAACTATATC
64 GTACATATTTTCAATAACTATATC
* *
96850110 ATATGTATATATTTTATGTACATACTTTTAATA-T-TATTATGTATTTATTTTTAATATATATAT
1 ATATGTATATA--TTATGTAAATACTTTTAATACTATATTATGTATATATTTTTAATATATATAT
*
96850173 GTATATATTT
64 GTACATATTT
96850183 ATATTATTAA
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
86 5 0.08
87 18 0.28
88 23 0.35
89 1 0.02
90 18 0.28
ACGTcount: A:0.35, C:0.05, G:0.06, T:0.54
Consensus pattern (87 bp):
ATATGTATATATTATGTAAATACTTTTAATACTATATTATGTATATATTTTTAATATATATATGT
ACATATTTTCAATAACTATATC
Found at i:96850176 original size:23 final size:23
Alignment explanation
Indices: 96849913--96850124 Score: 87
Period size: 24 Copynumber: 8.9 Consensus size: 23
96849903 TATATTATGT
* * *
96849913 ATATATATTATGTACATACTTATA
1 ATAT-TATTATGTATATATTTTTA
* *
96849937 ATATTATTATGTATTTATTCTTA
1 ATATTATTATGTATATATTTTTA
96849960 ATA-TA-TATGTATATATTTATGTA
1 ATATTATTATGTATATATTT-T-TA
* * **
96849983 GTATTATTA-ATAGT-TGCTTTTA
1 ATATTATTATGTA-TATATTTTTA
* * * *
96850005 ATATTATATTATTTCTA-ATATGT-
1 ATA-T-TATTATGTATATATTTTTA
*
96850028 ATA-TATTATGTAAATATTTTTA
1 ATATTATTATGTATATATTTTTA
*
96850050 ATACTATATTATGTATATATTTTTT
1 ATA-T-TATTATGTATATATTTTTA
* * *
96850075 ACATGTATTATGTACATATTTTCA
1 ATAT-TATTATGTATATATTTTTA
96850099 ATAACTATATCATATGTATATATTTT
1 AT-A-T-TAT--TATGTATATATTTT
96850125 ATGTACATAC
Statistics
Matches: 137, Mismatches: 33, Indels: 32
0.68 0.16 0.16
Matches are distributed among these distances:
20 8 0.06
21 15 0.11
22 10 0.07
23 26 0.19
24 37 0.27
25 24 0.18
26 4 0.03
28 13 0.09
ACGTcount: A:0.35, C:0.05, G:0.06, T:0.53
Consensus pattern (23 bp):
ATATTATTATGTATATATTTTTA
Found at i:96850264 original size:23 final size:23
Alignment explanation
Indices: 96850224--96850323 Score: 73
Period size: 23 Copynumber: 4.2 Consensus size: 23
96850214 TCATTTCTAA
*
96850224 TATATATGTGTATCGTATATGTTTT
1 TATATATAT-TAT-GTATATGTTTT
* *
96850249 TATATATATTATGTATATATCTT
1 TATATATATTATGTATATGTTTT
96850272 TAGTAT-TATTA-GTTATATGTTTT
1 TA-TATATATTATG-TATATGTTTT
*
96850295 T-TATACTATTTCATGTATAT-ATTT
1 TATATA-TA-TT-ATGTATATGTTTT
96850319 TATAT
1 TATAT
96850324 TATCCTTATT
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
21 3 0.05
22 1 0.02
23 27 0.44
24 12 0.20
25 17 0.28
26 1 0.02
ACGTcount: A:0.29, C:0.04, G:0.09, T:0.58
Consensus pattern (23 bp):
TATATATATTATGTATATGTTTT
Found at i:96850289 original size:46 final size:46
Alignment explanation
Indices: 96850239--96850326 Score: 128
Period size: 47 Copynumber: 1.9 Consensus size: 46
96850229 ATGTGTATCG
96850239 TATATG-TTTTTATA-TATATT-ATGTATATATCTTTAGTATTATTAGT
1 TATATGTTTTTTATACTAT-TTCATGTATATAT-TTTA-TATTATTAGT
96850285 TATATGTTTTTTATACTATTTCATGTATATATTTTATATTAT
1 TATATGTTTTTTATACTATTTCATGTATATATTTTATATTAT
96850327 CCTTATTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
46 12 0.31
47 14 0.36
48 13 0.33
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (46 bp):
TATATGTTTTTTATACTATTTCATGTATATATTTTATATTATTAGT
Found at i:96850483 original size:24 final size:23
Alignment explanation
Indices: 96850449--96850513 Score: 76
Period size: 24 Copynumber: 2.8 Consensus size: 23
96850439 TTCTAATATG
* *
96850449 TATATACTATGTAAATATTTTAA
1 TATATATTATGTATATATTTTAA
* *
96850472 TACTATATTATGTATACATTTTTA
1 TA-TATATTATGTATATATTTTAA
*
96850496 TATATATTACGTATATAT
1 TATATATTATGTATATAT
96850514 ATCTTTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 16 0.46
24 19 0.54
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.51
Consensus pattern (23 bp):
TATATATTATGTATATATTTTAA
Found at i:96850509 original size:23 final size:24
Alignment explanation
Indices: 96850465--96850510 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
96850455 CTATGTAAAT
*
96850465 ATTTTAATACTATATTATGTATAC
1 ATTTTAATACTATATTACGTATAC
*
96850489 ATTTTTATA-TATATTACGTATA
1 ATTTTAATACTATATTACGTATA
96850511 TATATCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (24 bp):
ATTTTAATACTATATTACGTATAC
Found at i:96850885 original size:18 final size:17
Alignment explanation
Indices: 96850837--96850891 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
96850827 ATTATGCGTG
96850837 TATATA-TATACTTTTTA
1 TATATAGTATA-TTTTTA
96850854 TATATAGTATTATTTTTA
1 TATATAGTA-TATTTTTA
*
96850872 TATATCATTATATTTATTA
1 TATAT-AGTATATTT-TTA
96850891 T
1 T
96850892 TACACTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 6 0.18
18 18 0.55
19 9 0.27
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (17 bp):
TATATAGTATATTTTTA
Found at i:96852845 original size:20 final size:20
Alignment explanation
Indices: 96852813--96852851 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
96852803 TGATACTATT
96852813 TATAAAAATATATATATACG
1 TATAAAAATATATATATACG
96852833 TATAATAAA-ATATATATAC
1 TATAA-AAATATATATATAC
96852852 TAATATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (20 bp):
TATAAAAATATATATATACG
Found at i:96852886 original size:21 final size:20
Alignment explanation
Indices: 96852800--96852890 Score: 67
Period size: 21 Copynumber: 4.2 Consensus size: 20
96852790 AGACATATGA
*
96852800 AAATGATACTATTTATAAAAAT
1 AAAT-ATACTA-TAATAAAAAT
96852822 ATATATATACGTATAAT-AAAAT
1 A-A-ATATAC-TATAATAAAAAT
* * *
96852844 ATATATACTAATATTAATAAT
1 AAATATACT-ATAATAAAAAT
*
96852865 AAATATACTAGGAATAAAAAT
1 AAATATACTA-TAATAAAAAT
96852886 AAATA
1 AAATA
96852891 AAATAATAGT
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
19 1 0.02
20 11 0.20
21 24 0.44
22 7 0.13
23 8 0.15
24 4 0.07
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (20 bp):
AAATATACTATAATAAAAAT
Found at i:96853438 original size:24 final size:24
Alignment explanation
Indices: 96853371--96853449 Score: 65
Period size: 24 Copynumber: 3.2 Consensus size: 24
96853361 TAATATAAGC
*
96853371 ATATATACACGA-AATAGTA-TAAA
1 ATATATACATGATAATA-TATTAAA
* *
96853394 A-ATATATATAACTAATAATATTAAA
1 ATATATACATGA-TAAT-ATATTAAA
*
96853419 ATATATACATGATAATATATAAAA
1 ATATATACATGATAATATATTAAA
96853443 ATGATAT
1 AT-ATAT
96853450 TAGAAAACAT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
22 7 0.16
23 1 0.02
24 14 0.32
25 14 0.32
26 8 0.18
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (24 bp):
ATATATACATGATAATATATTAAA
Found at i:96853584 original size:11 final size:11
Alignment explanation
Indices: 96853570--96853611 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
96853560 TTAAAGATAT
96853570 ATATATACATA
1 ATATATACATA
* *
96853581 ATATATATAAA
1 ATATATACATA
96853592 ATATATAC--A
1 ATATATACATA
96853601 ATATATACATA
1 ATATATACATA
96853612 TATTGGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 9 0.35
11 17 0.65
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATATACATA
Found at i:96853727 original size:21 final size:21
Alignment explanation
Indices: 96853693--96853732 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
96853683 ATATGTAATA
* *
96853693 ATAGTGTTAGAAATATACAAT
1 ATAGTATTAAAAATATACAAT
96853714 ATAGTATTAAAAATATACA
1 ATAGTATTAAAAATATACA
96853733 TACAATAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.33
Consensus pattern (21 bp):
ATAGTATTAAAAATATACAAT
Found at i:96864377 original size:25 final size:27
Alignment explanation
Indices: 96864340--96864392 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
96864330 TCAAACATGC
96864340 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
96864366 ATTTTGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
96864392 A
1 A
96864393 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:96865878 original size:26 final size:26
Alignment explanation
Indices: 96865847--96865954 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
96865837 TGAAATTCCC
*
96865847 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAATCCATT
*
96865873 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAATCCATT
*
96865899 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAATCCATT
*
96865925 GTCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAATCCATT
96865951 ATCA
1 ATCA
96865955 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAATCCATT
Found at i:96868330 original size:17 final size:17
Alignment explanation
Indices: 96868310--96868343 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
96868300 AGGTTTAGAT
96868310 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
96868327 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
96868344 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:96875101 original size:17 final size:17
Alignment explanation
Indices: 96875070--96875103 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
96875060 AGTTTAATAT
* *
96875070 ATATTATTCATATTTAA
1 ATATTATTAAAATTTAA
96875087 ATATTATTAAAATTTAA
1 ATATTATTAAAATTTAA
96875104 CTAATTCAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTATTAAAATTTAA
Found at i:96897225 original size:27 final size:27
Alignment explanation
Indices: 96897187--96897240 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
96897177 CCACTCTCAG
96897187 ATTCCTGTACTTTAAGGTAGTTGAGAA
1 ATTCCTGTACTTTAAGGTAGTTGAGAA
96897214 ATTCCTGTACTTTAAGGTAGTTGAGAA
1 ATTCCTGTACTTTAAGGTAGTTGAGAA
96897241 GATTTTAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (27 bp):
ATTCCTGTACTTTAAGGTAGTTGAGAA
Found at i:96897252 original size:27 final size:27
Alignment explanation
Indices: 96897195--96897253 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
96897185 AGATTCCTGT
**
96897195 ACTTTAAGGTAGTTGAGAAATTCCTGT
1 ACTTTAAGGTAGTTGAGAAATTCCTAA
*
96897222 ACTTTAAGGTAGTTGAGAAGATT-TTAA
1 ACTTTAAGGTAGTTGAGAA-ATTCCTAA
96897249 ACTTT
1 ACTTT
96897254 TTTCAATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
ACTTTAAGGTAGTTGAGAAATTCCTAA
Found at i:96904311 original size:40 final size:40
Alignment explanation
Indices: 96904265--96904416 Score: 196
Period size: 40 Copynumber: 4.0 Consensus size: 40
96904255 GAATATTTTA
*
96904265 TTTTATCTTTTAGTAGTTGAATAGAATAAAGGAATTATTT
1 TTTTATCTTTTAGTAGTTGATTAGAATAAAGGAATTATTT
* *
96904305 TTTTATCTTTTAGTAGTTTATTAGAATAAGGGAATTATTT
1 TTTTATCTTTTAGTAGTTGATTAGAATAAAGGAATTATTT
96904345 TTTTATC--TT--TA---G--TAGAATAAAGGAATTATTT
1 TTTTATCTTTTAGTAGTTGATTAGAATAAAGGAATTATTT
* *
96904376 TTTTATCTTTTAGTAGTTTATTAGAATAAGGGAATTATTT
1 TTTTATCTTTTAGTAGTTGATTAGAATAAAGGAATTATTT
96904416 T
1 T
96904417 CCCAATTAGG
Statistics
Matches: 96, Mismatches: 7, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
31 25 0.26
33 2 0.02
35 2 0.02
36 2 0.02
38 2 0.02
40 63 0.66
ACGTcount: A:0.32, C:0.03, G:0.14, T:0.51
Consensus pattern (40 bp):
TTTTATCTTTTAGTAGTTGATTAGAATAAAGGAATTATTT
Found at i:96904361 original size:31 final size:32
Alignment explanation
Indices: 96904321--96904391 Score: 117
Period size: 31 Copynumber: 2.2 Consensus size: 32
96904311 CTTTTAGTAG
* *
96904321 TTTATTAGAATAAGGGAATTATTTTTTTATC-
1 TTTAGTAGAATAAAGGAATTATTTTTTTATCT
96904352 TTTAGTAGAATAAAGGAATTATTTTTTTATCT
1 TTTAGTAGAATAAAGGAATTATTTTTTTATCT
96904384 TTTAGTAG
1 TTTAGTAG
96904392 TTTATTAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
31 29 0.78
32 8 0.22
ACGTcount: A:0.32, C:0.03, G:0.14, T:0.51
Consensus pattern (32 bp):
TTTAGTAGAATAAAGGAATTATTTTTTTATCT
Found at i:96910725 original size:3 final size:3
Alignment explanation
Indices: 96910717--96910750 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
96910707 CAACCAATAA
96910717 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
96910751 ACTAAACAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:96913380 original size:48 final size:48
Alignment explanation
Indices: 96913308--96913495 Score: 261
Period size: 48 Copynumber: 3.9 Consensus size: 48
96913298 TAGGGAATTT
* *
96913308 ATTGATTTGGCTTCAAGACC-TGATATTGGCACTTCGGGTGTGAGCTTC
1 ATTGATTTGGCTTCGAG-CCATGATATTGGCACTTCGGGTGCGAGCTTC
* *
96913356 ATTGATTTGGCTTCGGGCCATGATATTGGCACTTCTGGTGCGAGCTTC
1 ATTGATTTGGCTTCGAGCCATGATATTGGCACTTCGGGTGCGAGCTTC
* * * *
96913404 ATTGATTTGGCTTCGAGCCATAATATTAGCCCTTCGGGTGCGAGCTAC
1 ATTGATTTGGCTTCGAGCCATGATATTGGCACTTCGGGTGCGAGCTTC
* * *
96913452 ATTGATTTGGCTTCGAGCCATGATATTGACACTTAGGGTACGAG
1 ATTGATTTGGCTTCGAGCCATGATATTGGCACTTCGGGTGCGAG
96913496 ACTCTCGAGT
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
47 2 0.02
48 121 0.98
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.34
Consensus pattern (48 bp):
ATTGATTTGGCTTCGAGCCATGATATTGGCACTTCGGGTGCGAGCTTC
Found at i:96918058 original size:28 final size:28
Alignment explanation
Indices: 96918024--96918103 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
96918014 TTTGAATTTG
96918024 CGACCACAAAAGTTTAAAGTATATTTAC
1 CGACCACAAAAGTTTAAAGTATATTTAC
* * * *
96918052 TGACCACGGAGAAGTGT-CA-TATATTTAC
1 CGACCAC--AAAAGTTTAAAGTATATTTAC
96918080 CGACCACAAAAGTTTAAAGTATAT
1 CGACCACAAAAGTTTAAAGTATAT
96918104 AATGACTCAG
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
26 6 0.15
27 1 0.03
28 26 0.65
29 1 0.03
30 6 0.15
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (28 bp):
CGACCACAAAAGTTTAAAGTATATTTAC
Found at i:96918644 original size:18 final size:18
Alignment explanation
Indices: 96918621--96918661 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
96918611 GATTTGTCAG
96918621 CAAGTTAAAGCTAAACAT
1 CAAGTTAAAGCTAAACAT
96918639 CAAGTTAAAGCTAAACAT
1 CAAGTTAAAGCTAAACAT
96918657 CAAGT
1 CAAGT
96918662 ACCTTCGGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.49, C:0.17, G:0.12, T:0.22
Consensus pattern (18 bp):
CAAGTTAAAGCTAAACAT
Found at i:96934969 original size:47 final size:47
Alignment explanation
Indices: 96934886--96934975 Score: 110
Period size: 47 Copynumber: 1.9 Consensus size: 47
96934876 CTTGGGTAAC
* *
96934886 TATGCATAATATTAAAAACATAAGGTTCAGTATGGTGGTTGCTTAAT
1 TATGCATAATATCAAAAACATAAGGTTCAGTATGGTGATTGCTTAAT
* * * *
96934933 TATGTATAATATCAAAATCATAAGGTAT-GGTGTGGTGATTGCT
1 TATGCATAATATCAAAAACATAAGGT-TCAGTATGGTGATTGCT
96934976 CACCTTGTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
47 35 0.97
48 1 0.03
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (47 bp):
TATGCATAATATCAAAAACATAAGGTTCAGTATGGTGATTGCTTAAT
Found at i:96935738 original size:53 final size:53
Alignment explanation
Indices: 96935630--96935736 Score: 207
Period size: 52 Copynumber: 2.0 Consensus size: 53
96935620 TCTCTTTTAC
96935630 AAGGAAAAACTAAAATTAATTTTTTTTAAAAATTAAGAAAATTAAGAAATTAA
1 AAGGAAAAACTAAAATTAATTTTTTTTAAAAATTAAGAAAATTAAGAAATTAA
96935683 AAGGAAAAACTAAAATTAATTTTTTTT-AAAATTAAGAAAATTAAGAAATTAA
1 AAGGAAAAACTAAAATTAATTTTTTTTAAAAATTAAGAAAATTAAGAAATTAA
96935735 AA
1 AA
96935737 AGATAATATG
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 27 0.50
53 27 0.50
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (53 bp):
AAGGAAAAACTAAAATTAATTTTTTTTAAAAATTAAGAAAATTAAGAAATTAA
Found at i:96937700 original size:38 final size:38
Alignment explanation
Indices: 96937649--96937725 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
96937639 CATTATGATA
96937649 TACAATTAAATCTAAAACTAATTCGAGCTTACGAATGC
1 TACAATTAAATCTAAAACTAATTCGAGCTTACGAATGC
* *
96937687 TACAATTAAATCTAAGACTAATTCGAGCTTACGAGTGC
1 TACAATTAAATCTAAAACTAATTCGAGCTTACGAATGC
96937725 T
1 T
96937726 TTTTATAACC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (38 bp):
TACAATTAAATCTAAAACTAATTCGAGCTTACGAATGC
Found at i:96939237 original size:30 final size:31
Alignment explanation
Indices: 96939178--96939241 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
96939168 ACTTAACAAT
96939178 CAAATACCTCTAAAATAATAATAAAAATTAA
1 CAAATACCTCTAAAATAATAATAAAAATTAA
* * *
96939209 CAAATGCCTTTAAAATAATAA-GAAAATTAA
1 CAAATACCTCTAAAATAATAATAAAAATTAA
96939239 CAA
1 CAA
96939242 TAAAATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 11 0.37
31 19 0.63
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.25
Consensus pattern (31 bp):
CAAATACCTCTAAAATAATAATAAAAATTAA
Found at i:96939296 original size:22 final size:22
Alignment explanation
Indices: 96939270--96939318 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
96939260 ATATCCAAAT
96939270 AATAACAACAAAATAGTAGCAA
1 AATAACAACAAAATAGTAGCAA
* * **
96939292 CATAATAGTAAAATAGTAGCAA
1 AATAACAACAAAATAGTAGCAA
96939314 AATAA
1 AATAA
96939319 GAAGAAAACA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.18
Consensus pattern (22 bp):
AATAACAACAAAATAGTAGCAA
Found at i:96939317 original size:11 final size:11
Alignment explanation
Indices: 96939278--96939317 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
96939268 ATAATAACAA
96939278 CAAAATAGTAG
1 CAAAATAGTAG
* *
96939289 CAACATAATAG
1 CAAAATAGTAG
*
96939300 TAAAATAGTAG
1 CAAAATAGTAG
96939311 CAAAATA
1 CAAAATA
96939318 AGAAGAAAAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:96939326 original size:22 final size:21
Alignment explanation
Indices: 96939270--96939326 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
96939260 ATATCCAAAT
*
96939270 AATAACAACAAAATAGTAGCAA
1 AATAA-AAGAAAATAGTAGCAA
* *
96939292 CATAATAGTAAAATAGTAGCAA
1 AATAAAAG-AAAATAGTAGCAA
96939314 AATAAGAAGAAAA
1 AATAA-AAGAAAA
96939327 CAACAAGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 25 0.89
23 2 0.07
ACGTcount: A:0.63, C:0.09, G:0.12, T:0.16
Consensus pattern (21 bp):
AATAAAAGAAAATAGTAGCAA
Found at i:96940537 original size:22 final size:24
Alignment explanation
Indices: 96940509--96940552 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
96940499 ACTTTGTTCA
96940509 ACTTTAACTT-TTAT-TCAAAACC
1 ACTTTAACTTGTTATATCAAAACC
*
96940531 ACTTTAATTTGTTATATCAAAA
1 ACTTTAACTTGTTATATCAAAA
96940553 TATATGATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (24 bp):
ACTTTAACTTGTTATATCAAAACC
Found at i:96945928 original size:51 final size:52
Alignment explanation
Indices: 96945831--96945933 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 52
96945821 AGAATAAGGC
*
96945831 AAGTCCTACATTCTTGTTGGATGTTGTACTGTTTTTAGGTAAAAATAGACAACA
1 AAGTCCTACACTCTTGTTGGA--TTGTACTGTTTTTAGGTAAAAATAGACAACA
96945885 AAGTCCTACACTCTTGTTGGA-TGTACTGTTTTTAGGTAAAAATAGACAA
1 AAGTCCTACACTCTTGTTGGATTGTACTGTTTTTAGGTAAAAATAGACAA
96945934 AAATAATAGT
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
51 28 0.58
54 20 0.42
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (52 bp):
AAGTCCTACACTCTTGTTGGATTGTACTGTTTTTAGGTAAAAATAGACAACA
Found at i:96947869 original size:22 final size:22
Alignment explanation
Indices: 96947841--96947887 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
96947831 TAAATTATAA
96947841 TAAAATGATAATGATACTACTT
1 TAAAATGATAATGATACTACTT
96947863 TAAAATGATAATGATACTACTT
1 TAAAATGATAATGATACTACTT
96947885 TAA
1 TAA
96947888 TGTAGCCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (22 bp):
TAAAATGATAATGATACTACTT
Found at i:96954965 original size:16 final size:18
Alignment explanation
Indices: 96954944--96954980 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
96954934 TTAAAATATG
96954944 AAAAAATAAT-TT-TTTT
1 AAAAAATAATGTTCTTTT
*
96954960 AAAAAATTATGTTCTTTT
1 AAAAAATAATGTTCTTTT
96954978 AAA
1 AAA
96954981 GGTAAAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 9 0.50
17 2 0.11
18 7 0.39
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (18 bp):
AAAAAATAATGTTCTTTT
Found at i:96962201 original size:2 final size:2
Alignment explanation
Indices: 96962196--96962220 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
96962186 ATAAATAAAT
96962196 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
96962221 TATATATGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:96970535 original size:20 final size:20
Alignment explanation
Indices: 96970510--96970551 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
96970500 TTTCATGTAC
96970510 GTGGTATTGTAATGTAAGTT
1 GTGGTATTGTAATGTAAGTT
96970530 GTGGTATTGTAATGTAAGTT
1 GTGGTATTGTAATGTAAGTT
96970550 GT
1 GT
96970552 AGATGTTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (20 bp):
GTGGTATTGTAATGTAAGTT
Found at i:96970563 original size:7 final size:7
Alignment explanation
Indices: 96970553--96970578 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
96970543 GTAAGTTGTA
96970553 GATGTTT
1 GATGTTT
96970560 GATGTTT
1 GATGTTT
96970567 GATGTTT
1 GATGTTT
96970574 GATGT
1 GATGT
96970579 GCCTAGCAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (7 bp):
GATGTTT
Found at i:96973697 original size:15 final size:17
Alignment explanation
Indices: 96973673--96973709 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
96973663 CGTGTACTCT
96973673 ATTTTGATAT-TTTT-A
1 ATTTTGATATCTTTTGA
*
96973688 ATTTTTATATCTTTTGA
1 ATTTTGATATCTTTTGA
96973705 ATTTT
1 ATTTT
96973710 AAAGTTTCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 9 0.47
16 4 0.21
17 6 0.32
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (17 bp):
ATTTTGATATCTTTTGA
Found at i:96995390 original size:44 final size:44
Alignment explanation
Indices: 96995315--96995497 Score: 111
Period size: 40 Copynumber: 4.3 Consensus size: 44
96995305 CTAAGAATTT
* *
96995315 GCACACTTAGTG-CATCAGTTATTAGCCGAAGCTATAAT-GATCTC
1 GCACACTTAGTGCCATCAATTA-TAGCCGAAGCTAT-ATCGATATC
* * *
96995359 GCACACTTAGTGCCATCACATTA-AGCTGAAGCTATCTCGGTATC
1 GCACACTTAGTGCCATCA-ATTATAGCCGAAGCTATATCGATATC
* * *
96995403 GCACACTTAGTGCC--CCA-TATAACCGAAGCTAT-TCCA-ATTC
1 GCACACTTAGTGCCATCAATTATAGCCGAAGCTATATCGATA-TC
** * * * *
96995443 GCACACCAAGTG-C-T-ATTTATAGCCGAAGCTATTTTGA-AAC
1 GCACACTTAGTGCCATCAATTATAGCCGAAGCTATATCGATATC
*
96995483 GCACACTGAGTGCCA
1 GCACACTTAGTGCCA
96995498 AATATCATAA
Statistics
Matches: 109, Mismatches: 20, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
39 2 0.02
40 41 0.38
41 15 0.14
42 1 0.01
43 1 0.01
44 41 0.38
45 5 0.05
46 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (44 bp):
GCACACTTAGTGCCATCAATTATAGCCGAAGCTATATCGATATC
Found at i:96997119 original size:25 final size:25
Alignment explanation
Indices: 96997058--96997119 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
96997048 TTTGCTTGAA
*
96997058 AATTTATGTGATAGGAAAATCGTATG
1 AATTTA-GTGATAGGAAAATCGTATC
** * **
96997084 AAAATATTGATAGGAAAATTTTATC
1 AATTTAGTGATAGGAAAATCGTATC
96997109 AATTTAGTGAT
1 AATTTAGTGAT
96997120 TAGTTAGAAA
Statistics
Matches: 27, Mismatches: 9, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
25 23 0.85
26 4 0.15
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.37
Consensus pattern (25 bp):
AATTTAGTGATAGGAAAATCGTATC
Found at i:96999379 original size:10 final size:10
Alignment explanation
Indices: 96999364--96999389 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
96999354 TTTTAATAAA
96999364 TTTATATATC
1 TTTATATATC
96999374 TTTATATATC
1 TTTATATATC
96999384 TTTATA
1 TTTATA
96999390 AATTTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTATATATC
Found at i:97001618 original size:50 final size:50
Alignment explanation
Indices: 97001543--97001643 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
97001533 ACTTTTTTCT
*
97001543 GTCTATCATTACGATACTCTAATCTAATGGTATTAATTTCTAGCATTGGA
1 GTCTATCATTACGATACTCTAATCTAATGGTATTAATTTCTAACATTGGA
*
97001593 GTCTATCATTACGGTACTCTAATCTAATGGTATTAATTTCTAACATTGGA
1 GTCTATCATTACGATACTCTAATCTAATGGTATTAATTTCTAACATTGGA
97001643 G
1 G
97001644 AACACTAACC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.40
Consensus pattern (50 bp):
GTCTATCATTACGATACTCTAATCTAATGGTATTAATTTCTAACATTGGA
Found at i:97002095 original size:20 final size:19
Alignment explanation
Indices: 97002058--97002106 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
97002048 AAAATTCTCC
97002058 CTTTATTTTTTTTCTCTTT
1 CTTTATTTTTTTTCTCTTT
* *
97002077 CTTTCTTTTCTTTTTTCTTT
1 CTTTATTTT-TTTTCTCTTT
*
97002097 -TTAATTTTTT
1 CTTTATTTTTT
97002107 CTTCCCAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 2 0.08
19 14 0.56
20 9 0.36
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (19 bp):
CTTTATTTTTTTTCTCTTT
Found at i:97018258 original size:9 final size:9
Alignment explanation
Indices: 97018238--97018312 Score: 53
Period size: 9 Copynumber: 8.3 Consensus size: 9
97018228 GGCATTGTTT
*
97018238 ATGATGAAG
1 ATGATGATG
*
97018247 ATGAAGATG
1 ATGATGATG
**
97018256 ATGGGGATG
1 ATGATGATG
*
97018265 ATGGTGATG
1 ATGATGATG
*
97018274 GTGATGATG
1 ATGATGATG
*
97018283 ATGATGGAAG
1 ATGAT-GATG
97018293 -TGATGATG
1 ATGATGATG
* *
97018301 GTGATGGTG
1 ATGATGATG
97018310 ATG
1 ATG
97018313 CATGCAACAC
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
8 3 0.06
9 46 0.88
10 3 0.06
ACGTcount: A:0.29, C:0.00, G:0.43, T:0.28
Consensus pattern (9 bp):
ATGATGATG
Found at i:97018264 original size:15 final size:15
Alignment explanation
Indices: 97018246--97018312 Score: 62
Period size: 15 Copynumber: 4.3 Consensus size: 15
97018236 TTATGATGAA
*
97018246 GATGAAGATGATGGG
1 GATGATGATGATGGG
* *
97018261 GATGATGGTGATGGT
1 GATGATGATGATGGG
97018276 GATGATGATGATGGAAG
1 GATGATGATGATGG--G
* *
97018293 TGATGATGGTGATGGT
1 -GATGATGATGATGGG
97018309 GATG
1 GATG
97018313 CATGCAACAC
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
15 29 0.69
18 13 0.31
ACGTcount: A:0.27, C:0.00, G:0.45, T:0.28
Consensus pattern (15 bp):
GATGATGATGATGGG
Found at i:97021071 original size:11 final size:12
Alignment explanation
Indices: 97021038--97021071 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
97021028 ATTTTTATTT
97021038 AATTAATATTTAA
1 AATTAAT-TTTAA
97021051 AATTAATTTTAA
1 AATTAATTTTAA
97021063 AA-TAATTTT
1 AATTAATTTT
97021072 TAATAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.33
12 7 0.33
13 7 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
AATTAATTTTAA
Found at i:97021072 original size:12 final size:13
Alignment explanation
Indices: 97021038--97021074 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
97021028 ATTTTTATTT
*
97021038 AATTAATATTTAA
1 AATTAATTTTTAA
97021051 AATTAA-TTTTAA
1 AATTAATTTTTAA
97021063 AA-TAATTTTTAA
1 AATTAATTTTTAA
97021075 TAAATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 3 0.14
12 13 0.59
13 6 0.27
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
AATTAATTTTTAA
Found at i:97021941 original size:18 final size:18
Alignment explanation
Indices: 97021920--97021959 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
97021910 TTTAAAATTT
97021920 AAAAAATAAAAAAAAACA
1 AAAAAATAAAAAAAAACA
** *
97021938 AAAAAATATTAAAAAATA
1 AAAAAATAAAAAAAAACA
97021956 AAAA
1 AAAA
97021960 TTATGAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (18 bp):
AAAAAATAAAAAAAAACA
Found at i:97029078 original size:53 final size:51
Alignment explanation
Indices: 97028931--97029082 Score: 155
Period size: 52 Copynumber: 2.9 Consensus size: 51
97028921 TGATGAAAAA
* *
97028931 GATGTGATATGTGCTTCCGTATAAGACCATATCTGGGCTATGGTATCGGTAC
1 GATGTGATATGTG-TTCCGTATAAGACCATATCTGGGATATGGCATCGGTAC
* * * * **
97028983 AATGTGACT-CGAGTTCCCGTATAAGACCATAGT-TGGGTTATGGCATCGGTGT
1 GATGTGA-TATGTGTT-CCGTATAAGACCATA-TCTGGGATATGGCATCGGTAC
*
97029035 GATGTGATAATGTGATTCCGTATGAGACCATATCTGGGATATGGCATC
1 GATGTGAT-ATGTG-TTCCGTATAAGACCATATCTGGGATATGGCATC
97029083 AGTATGTTAT
Statistics
Matches: 81, Mismatches: 12, Indels: 13
0.76 0.11 0.12
Matches are distributed among these distances:
51 3 0.04
52 45 0.56
53 31 0.38
54 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (51 bp):
GATGTGATATGTGTTCCGTATAAGACCATATCTGGGATATGGCATCGGTAC
Found at i:97038765 original size:39 final size:39
Alignment explanation
Indices: 97038722--97038841 Score: 186
Period size: 39 Copynumber: 3.1 Consensus size: 39
97038712 CCGGGTACCA
* * *
97038722 TTCCAACACGTAGCCTGCGGACTTCAAGTCCAGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
97038761 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
* * *
97038800 TTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
97038839 TTC
1 TTC
97038842 AAATACCATG
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
Found at i:97040146 original size:21 final size:21
Alignment explanation
Indices: 97040121--97040161 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
97040111 CGACAATTTC
97040121 AATTCATACTT-TTCAACCATG
1 AATTC-TACTTATTCAACCATG
97040142 AATTCTACTTATTCAACCAT
1 AATTCTACTTATTCAACCAT
97040162 CATTTAAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.34, C:0.24, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTCTACTTATTCAACCATG
Found at i:97042610 original size:14 final size:14
Alignment explanation
Indices: 97042580--97042613 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
97042570 TCAGAAATGT
*
97042580 AAATTATTTTTTAA
1 AAATTATTTTTCAA
*
97042594 AAATTATTTTTCGA
1 AAATTATTTTTCAA
97042608 AAATTA
1 AAATTA
97042614 CTTTCAGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (14 bp):
AAATTATTTTTCAA
Found at i:97054880 original size:18 final size:17
Alignment explanation
Indices: 97054857--97054895 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
97054847 AATCTTACTA
*
97054857 ATATATTACTTTTATTAT
1 ATATATTACATTTATT-T
*
97054875 ATATATTAGATTTATTT
1 ATATATTACATTTATTT
97054892 ATAT
1 ATAT
97054896 TTTTTAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (17 bp):
ATATATTACATTTATTT
Found at i:97055942 original size:19 final size:21
Alignment explanation
Indices: 97055918--97055964 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
97055908 TTTTTTCATT
*
97055918 AATTATAG-AACATTA-AAAA
1 AATTATAGAAAAATTATAAAA
97055937 AATTATAGAAAAATTATAAAA
1 AATTATAGAAAAATTATAAAA
97055958 AATTATA
1 AATTATA
97055965 AAAGTTCCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 8 0.32
20 6 0.24
21 11 0.44
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (21 bp):
AATTATAGAAAAATTATAAAA
Found at i:97055948 original size:10 final size:10
Alignment explanation
Indices: 97055918--97055967 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
97055908 TTTTTTCATT
*
97055918 AATTATAGAA
1 AATTATAAAA
*
97055928 CATTA-AAAA
1 AATTATAAAA
97055937 AATTATAGAAA
1 AATTATA-AAA
97055948 AATTATAAAA
1 AATTATAAAA
97055958 AATTATAAAA
1 AATTATAAAA
97055968 GTTCCCCAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 7 0.20
10 18 0.51
11 10 0.29
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (10 bp):
AATTATAAAA
Found at i:97058626 original size:53 final size:56
Alignment explanation
Indices: 97058546--97058661 Score: 141
Period size: 53 Copynumber: 2.1 Consensus size: 56
97058536 CCATGGCAAC
* * * *
97058546 ATGTGA-TATGTGATTTCCGTATAAGACCATAGGTGGGCTATGACATC-G-GAGAG
1 ATGTGATTATGTGACTTCCATATAAGACCATAGCTGGGATATGACATCAGTGAGAG
* * *
97058599 ATGTGATTATGTG-CTTCCATATAAGACCATATCTGGGATATGGCATCAGTGAGAT
1 ATGTGATTATGTGACTTCCATATAAGACCATAGCTGGGATATGACATCAGTGAGAG
97058654 ATGTGATT
1 ATGTGATT
97058662 CGTGTAAGAC
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 34 0.64
54 7 0.13
55 12 0.23
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (56 bp):
ATGTGATTATGTGACTTCCATATAAGACCATAGCTGGGATATGACATCAGTGAGAG
Found at i:97058718 original size:48 final size:48
Alignment explanation
Indices: 97058546--97058922 Score: 345
Period size: 48 Copynumber: 8.0 Consensus size: 48
97058536 CCATGGCAAC
* * * *
97058546 ATGTGATATGTGATTTCCGTATAAGACCATAGGTGGGCTATGACATCGGAGAG
1 ATGTGATATGTGA--TCCGTGTAAGACCATAGTTGGGCTATGGCATC---GAT
* * * *
97058599 ATGTGATTATGTGCTTCCATATAAGACCATA-TCTGGGATATGGCATC-A-
1 ATGTGA-TATGTG-ATCCGTGTAAGACCATAGT-TGGGCTATGGCATCGAT
* * * *
97058647 GTGAGATATGTGATTCGTGTAAGACCATAGTTGGGCTATGGCATCGTT
1 ATGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCGAT
*
97058695 ATGTGATATGTGATCCGTGTAAGACCATAGTTGGTCTATGGCATCGAT
1 ATGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCGAT
* * * *
97058743 TTGTGATATGTGATCTGTGTAAGACCATAGCTAGGCTATGGCATCGAT
1 ATGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCGAT
* * *
97058791 ATGTGATATGTGATTACGTGTAAGACTATAGCTGGGCTATGGCATCGAT
1 ATGTGATATGTGA-TCCGTGTAAGACCATAGTTGGGCTATGGCATCGAT
97058840 ATGTGA-A--T-AT--GTGTAAGACCATAGTTGGGCTATGGCATC-ATT
1 ATGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCGA-T
* **
97058882 ATGTGA-A---GAT--GTGTAAGACCAAAGTTGAACTATGGCATCGA
1 ATGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCGA
97058923 GAAAACGAAG
Statistics
Matches: 281, Mismatches: 33, Indels: 30
0.82 0.10 0.09
Matches are distributed among these distances:
41 1 0.00
42 63 0.22
43 1 0.00
44 1 0.00
45 1 0.00
46 27 0.10
47 7 0.02
48 103 0.37
49 38 0.14
53 33 0.12
54 6 0.02
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.32
Consensus pattern (48 bp):
ATGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCGAT
Found at i:97058854 original size:42 final size:42
Alignment explanation
Indices: 97058795--97058922 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
97058785 ATCGATATGT
* * *
97058795 GATATGTGATTACGTGTAAGACTATAGCTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
*
97058837 GATATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
* * * **
97058879 -ATTATGTGAAGATGTGTAAGACCAAAGTTGAACTATGGCATC
1 GA-TATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
97058921 GA
1 GA
97058923 GAAAACGAAG
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
41 1 0.01
42 74 0.97
43 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.30
Consensus pattern (42 bp):
GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:97064267 original size:27 final size:26
Alignment explanation
Indices: 97064230--97064344 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
97064220 AGCATGGCTG
* *
97064230 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
97064256 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
97064284 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
97064311 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
97064338 CCAGAAC
1 CCAGAAC
97064345 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:97064289 original size:54 final size:54
Alignment explanation
Indices: 97064230--97064344 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
97064220 AGCATGGCTG
*
97064230 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
97064284 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
97064338 CCAGAAC
1 CCAGAAC
97064345 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:97065984 original size:26 final size:26
Alignment explanation
Indices: 97065948--97066057 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
97065938 TATGAAATTC
97065948 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
97065974 TTATCATGAAACATTTTCCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
97066000 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
97066026 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
97066052 TTATCA
1 TTATCA
97066058 ATTTGTATTA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 77 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:97066477 original size:20 final size:20
Alignment explanation
Indices: 97066435--97066484 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
97066425 ATTATTAAAT
97066435 TTAATTT-ATAAATATTTTA
1 TTAATTTAATAAATATTTTA
*
97066454 TTAATTTAATAGAT-TTTATA
1 TTAATTTAATAAATATTT-TA
97066474 TTAAATTTAAT
1 TT-AATTTAAT
97066485 CTAAAACTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 10 0.37
20 9 0.33
21 8 0.30
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TTAATTTAATAAATATTTTA
Found at i:97067688 original size:13 final size:13
Alignment explanation
Indices: 97067670--97067695 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97067660 TAAATCAAAT
97067670 ATAAAAAATTAAA
1 ATAAAAAATTAAA
97067683 ATAAAAAATTAAA
1 ATAAAAAATTAAA
97067696 CCATATGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
ATAAAAAATTAAA
Found at i:97071241 original size:15 final size:16
Alignment explanation
Indices: 97071209--97071243 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
97071199 CCACAACATC
97071209 ATTTATAAACATTTAA
1 ATTTATAAACATTTAA
*
97071225 ATTTATCAACA-TTAA
1 ATTTATAAACATTTAA
97071240 ATTT
1 ATTT
97071244 CTAATGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTTATAAACATTTAA
Found at i:97071413 original size:9 final size:9
Alignment explanation
Indices: 97071401--97071473 Score: 69
Period size: 9 Copynumber: 7.9 Consensus size: 9
97071391 ATTTGGAAAA
97071401 TTTTATAAT
1 TTTTATAAT
97071410 TTTT-TAAT
1 TTTTATAAT
97071418 TATTCTATAAT
1 T-TT-TATAAT
97071429 TTTT-TAACT
1 TTTTATAA-T
*
97071438 TTTAATAAAT
1 TTTTAT-AAT
*
97071448 TTTTGTAAT
1 TTTTATAAT
*
97071457 TTTTATAGT
1 TTTTATAAT
97071466 TTTTATAA
1 TTTTATAA
97071474 AATAAAAAAG
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 8 0.15
9 28 0.54
10 9 0.17
11 7 0.13
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:97072738 original size:13 final size:14
Alignment explanation
Indices: 97072714--97072754 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
97072704 TTTATTTAAA
*
97072714 AATAATTAAATATT
1 AATAAATAAATATT
*
97072728 AAT-TATAAATATT
1 AATAAATAAATATT
97072741 -ATAAATAAATATT
1 AATAAATAAATATT
97072754 A
1 A
97072755 CTAAGGTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
12 2 0.09
13 17 0.77
14 3 0.14
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATAAATAAATATT
Found at i:97073326 original size:29 final size:29
Alignment explanation
Indices: 97073269--97073329 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
97073259 TTTACAAAAT
*
97073269 AATTTTAATAATATAAATAATTAAACTTA
1 AATTTTAATAATATAAATAAATAAACTTA
*
97073298 AATTTTAA-AATTTAAA-AAATAAATTCTTA
1 AATTTTAATAATATAAATAAATAAA--CTTA
97073327 AAT
1 AAT
97073330 ATAAAGATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 6 0.21
28 7 0.25
29 15 0.54
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (29 bp):
AATTTTAATAATATAAATAAATAAACTTA
Found at i:97082761 original size:3 final size:3
Alignment explanation
Indices: 97082753--97082783 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
97082743 AAATTTGAAG
97082753 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
97082784 ATTTTTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:97090412 original size:23 final size:22
Alignment explanation
Indices: 97090386--97090437 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
97090376 TAAAAGAACA
97090386 TATATAAATAATAAGAAAAATAT-
1 TATATAAATAAT-A-AAAAATATC
* *
97090409 TATAATAAGTACTAAAAAATATC
1 TAT-ATAAATAATAAAAAATATC
97090432 TATATA
1 TATATA
97090438 TATATACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 11 0.44
23 7 0.28
24 7 0.28
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (22 bp):
TATATAAATAATAAAAAATATC
Found at i:97104271 original size:88 final size:89
Alignment explanation
Indices: 97104116--97104674 Score: 501
Period size: 88 Copynumber: 6.4 Consensus size: 89
97104106 AAGTCATTAA
* * * * * * * * * *
97104116 AGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAGGATAGCAGGTCCTATCTTCCTATA
1 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATA
*
97104181 TTGGTAG-GAAGTGGATCGAAGAT
66 TTGGTAGTGAAGTAGATCGAAGAT
* * * * *
97104204 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
1 AGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTAT
* *
97104268 ATTGG-CGTGAAGTAGATCGAAGGT
65 ATTGGTAGTGAAGTAGATCGAAGAT
* * * * *
97104292 AGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG-ATGTAGATCTTGTCTTCCCATA
1 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATA
* * * *
97104356 TTGGTGGCGAAGTAGATCGCAGAA
66 TTGGTAGTGAAGTAGATCGAAGAT
* * * * * * * *
97104380 AGCAGATCTTGTC-TCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTAT
1 AGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTAT
* * *
97104443 ATTGATAG-GAAGTGGATCCAAGAT
65 ATTGGTAGTGAAGTAGATCGAAGAT
* * * * * * * *
97104467 -GCATATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGT
1 AGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTAT
*
97104531 ATTGG-CGTG-AGTAGATCGAAGAT
65 ATTGGTAGTGAAGTAGATCGAAGAT
* * * * * * *
97104554 AGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAG-ATGCAGATCTTGTCTTCCCATA
1 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATA
* *
97104618 CTGGTGGTGAAGTAGATCGAAGAT
66 TTGGTAGTGAAGTAGATCGAAGAT
*
97104642 AGCAGATCCTGCCTTCCTATATTGGTAGGAAGT
1 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGT
97104675 GGATTGAAAA
Statistics
Matches: 370, Mismatches: 89, Indels: 24
0.77 0.18 0.05
Matches are distributed among these distances:
86 33 0.09
87 111 0.30
88 203 0.55
89 23 0.06
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (89 bp):
AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATA
TTGGTAGTGAAGTAGATCGAAGAT
Found at i:97104666 original size:131 final size:132
Alignment explanation
Indices: 97104114--97104649 Score: 914
Period size: 131 Copynumber: 4.1 Consensus size: 132
97104104 TTAAGTCATT
* *
97104114 AAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAGGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
97104179 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
97104244 AG
131 AG
* *
97104246 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* * * *
97104311 TATTGGTAGGAAGTGGATCGAAGATGTAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
97104376 AG
131 AG
97104378 AAAGCAGATCTTGTC-TCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* * *
97104442 TATTGATAGGAAGTGGATCCAAGATGCATATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
97104507 AG
131 AG
97104509 AAAGCAGATCTTGTCTTCATGTATTGGCGTG-AGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
97104573 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
97104638 AG
131 AG
*
97104640 ATAGCAGATC
1 AAAGCAGATC
97104650 CTGCCTTCCT
Statistics
Matches: 384, Mismatches: 19, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
131 228 0.59
132 156 0.41
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
AG
Found at i:97104901 original size:95 final size:96
Alignment explanation
Indices: 97104684--97104917 Score: 389
Period size: 95 Copynumber: 2.4 Consensus size: 96
97104674 TGGATTGAAA
97104684 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC
1 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC
*
97104749 ATGCGACTACAGTAGAGTACATTGAAGCCGAT
66 AT-CGACTACAGTAGAGTACATCGAAGCCGAT
* *
97104781 AACTCTATCTCCCTGTATTCGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCC
1 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC
* *
97104846 CT-GACTACAGTGGAGTACATCGAAGCCGAT
66 ATCGACTACAGTAGAGTACATCGAAGCCGAT
* *
97104876 AACTCTATCTCCTTGTATTTAGCAGTGGAATAGATTGAAGAT
1 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
97104918 TACAGATCTT
Statistics
Matches: 129, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
95 65 0.50
97 64 0.50
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (96 bp):
AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC
ATCGACTACAGTAGAGTACATCGAAGCCGAT
Found at i:97107801 original size:28 final size:28
Alignment explanation
Indices: 97107769--97107834 Score: 123
Period size: 28 Copynumber: 2.3 Consensus size: 28
97107759 ACTAAAAGTA
97107769 TACATAATAATAATATATACATACAAAG
1 TACATAATAATAATATATACATACAAAG
97107797 TACATAATAATAATATATACATACAAAG
1 TACATAATAATAATATATACATACAAAG
97107825 TACACTAATA
1 TACA-TAATA
97107835 TTTAAAGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 32 0.86
29 5 0.14
ACGTcount: A:0.56, C:0.12, G:0.03, T:0.29
Consensus pattern (28 bp):
TACATAATAATAATATATACATACAAAG
Found at i:97107881 original size:16 final size:16
Alignment explanation
Indices: 97107857--97107887 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97107847 AATAGTAAAC
*
97107857 ATAATATTAATATTAA
1 ATAAAATTAATATTAA
97107873 ATAAAATTAATATTA
1 ATAAAATTAATATTA
97107888 CAAATTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATAAAATTAATATTAA
Found at i:97108504 original size:18 final size:20
Alignment explanation
Indices: 97108480--97108530 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 20
97108470 TAAAACTCAA
*
97108480 ATTTTATTTTTTGCTT-TTT
1 ATTTTATTTTTTACTTGTTT
*
97108499 -TTTTATATTTTACTTGTTT
1 ATTTTATTTTTTACTTGTTT
*
97108518 ATTTTATTATTTA
1 ATTTTATTTTTTA
97108531 TTATATTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 13 0.50
19 3 0.12
20 10 0.38
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (20 bp):
ATTTTATTTTTTACTTGTTT
Found at i:97112582 original size:19 final size:20
Alignment explanation
Indices: 97112541--97112583 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
97112531 TAGTTTTCAG
*
97112541 ATAATAAAAATTATATATAT
1 ATAAGAAAAATTATATATAT
97112561 ATAAGAAAAA-TAT-TATATT
1 ATAAGAAAAATTATATATA-T
97112580 ATAA
1 ATAA
97112584 ATTTGAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 8 0.38
20 9 0.43
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
ATAAGAAAAATTATATATAT
Found at i:97115707 original size:29 final size:30
Alignment explanation
Indices: 97115665--97115729 Score: 87
Period size: 31 Copynumber: 2.2 Consensus size: 30
97115655 ATAGTTCATG
* *
97115665 TACCACATTGAACATTT-TTAAAATATAAA
1 TACCACATTAAACATTTATAAAAATATAAA
*
97115694 TACCATATTAAACATTTCATAAAAATATAAA
1 TACCACATTAAACATTT-ATAAAAATATAAA
97115725 TACCA
1 TACCA
97115730 AATATGACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 15 0.48
31 16 0.52
ACGTcount: A:0.51, C:0.15, G:0.02, T:0.32
Consensus pattern (30 bp):
TACCACATTAAACATTTATAAAAATATAAA
Found at i:97118578 original size:36 final size:36
Alignment explanation
Indices: 97118531--97118602 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
97118521 GGATTGGCTC
97118531 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
1 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
97118567 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
1 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
97118603 TCCAGTTCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (36 bp):
ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
Found at i:97126093 original size:15 final size:16
Alignment explanation
Indices: 97126067--97126096 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
97126057 CTTTATTTTC
97126067 TTTTATTTATTTTATG
1 TTTTATTTATTTTATG
97126083 TTTTA-TTATTTTAT
1 TTTTATTTATTTTAT
97126097 ATTATTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTATTTATTTTATG
Found at i:97126104 original size:8 final size:8
Alignment explanation
Indices: 97126069--97126125 Score: 50
Period size: 8 Copynumber: 7.5 Consensus size: 8
97126059 TTATTTTCTT
97126069 TTATT-TA
1 TTATTATA
*
97126076 TT-TTATG
1 TTATTATA
97126083 TT-TTATTA
1 TTATTA-TA
97126091 TT-TTATA
1 TTATTATA
97126098 TTATTATA
1 TTATTATA
*
97126106 TTAATATA
1 TTATTATA
*
97126114 CTATTATA
1 TTATTATA
97126122 TTAT
1 TTAT
97126126 ATACTTAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
6 2 0.05
7 12 0.29
8 27 0.66
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TTATTATA
Found at i:97126113 original size:16 final size:15
Alignment explanation
Indices: 97126086--97126130 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
97126076 TTTTATGTTT
*
97126086 TATTAT-TT-TATAT
1 TATTATATTATATAC
97126099 TATTATATTAATATAC
1 TATTATATT-ATATAC
97126115 TATTATATTATATAC
1 TATTATATTATATAC
97126130 T
1 T
97126131 TAAATACTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 6 0.21
14 2 0.07
15 7 0.25
16 13 0.46
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTATATTATATAC
Found at i:97126145 original size:24 final size:24
Alignment explanation
Indices: 97126094--97126145 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
97126084 TTTATTATTT
*
97126094 TATATTATTATATTAATATACTAT
1 TATATTATTATATTAATATACTAG
97126118 TATATTA-TATACTTAA-ATACTAAG
1 TATATTATTATA-TTAATATACT-AG
97126142 TATA
1 TATA
97126146 AATATATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (24 bp):
TATATTATTATATTAATATACTAG
Found at i:97131085 original size:22 final size:21
Alignment explanation
Indices: 97131052--97131098 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
97131042 ATTTTAGTGA
* *
97131052 ATTTTGTATTTATATTTTGAGG
1 ATTTTGTATTTAGATTTCG-GG
97131074 ATTTT-TATTTTAGATTTCGGG
1 ATTTTGTA-TTTAGATTTCGGG
97131095 ATTT
1 ATTT
97131099 AGTTTTATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.21, C:0.02, G:0.17, T:0.60
Consensus pattern (21 bp):
ATTTTGTATTTAGATTTCGGG
Found at i:97131515 original size:20 final size:20
Alignment explanation
Indices: 97131472--97131515 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
97131462 AAAAAACATC
* *
97131472 TAAAAAGCAATAAAAGTAAT
1 TAAAAAGCAATAAAAATAAA
*
97131492 TAAAAAGTAATAAAAATAAA
1 TAAAAAGCAATAAAAATAAA
97131512 TAAA
1 TAAA
97131516 TATTCATTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.20
Consensus pattern (20 bp):
TAAAAAGCAATAAAAATAAA
Found at i:97141093 original size:14 final size:14
Alignment explanation
Indices: 97141074--97141129 Score: 51
Period size: 14 Copynumber: 4.1 Consensus size: 14
97141064 TTTTAAACAT
97141074 TATAATATAATATA
1 TATAATATAATATA
*
97141088 TATAATATATTATA
1 TATAATATAATATA
* * * *
97141102 AATGATAGATTATA
1 TATAATATAATATA
*
97141116 GATAA-ATAATATA
1 TATAATATAATATA
97141129 T
1 T
97141130 TCTGTCAATC
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
13 6 0.18
14 27 0.82
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (14 bp):
TATAATATAATATA
Found at i:97144345 original size:39 final size:41
Alignment explanation
Indices: 97144302--97144381 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 41
97144292 ATATATTTGT
* *
97144302 TATTAAATTGAT-TTT-TATTATT-TATTATTATTATTATTC
1 TATTAAATT-ATATTTATATTATTAAATTATGATTATTATTC
97144341 TATTAAATTATAATTTATATTATTAAATTATGATTATTATT
1 TATTAAATTAT-ATTTATATTATTAAATTATGATTATTATT
97144382 ATTAAAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
38 2 0.06
39 9 0.26
40 3 0.09
41 7 0.20
42 14 0.40
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (41 bp):
TATTAAATTATATTTATATTATTAAATTATGATTATTATTC
Found at i:97144364 original size:20 final size:20
Alignment explanation
Indices: 97144316--97144387 Score: 76
Period size: 20 Copynumber: 3.5 Consensus size: 20
97144306 AAATTGATTT
* *
97144316 TTATTATT-TATTATTATTA
1 TTATTATTAAATTATAATTA
97144335 TTATTCTATTAAATTATAATT-
1 TTA-T-TATTAAATTATAATTA
*
97144356 TATATTATTAAATTATGATTA
1 T-TATTATTAAATTATAATTA
97144377 TTATTATTAAA
1 TTATTATTAAA
97144388 AATAAATTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
19 3 0.07
20 25 0.56
21 7 0.16
22 10 0.22
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (20 bp):
TTATTATTAAATTATAATTA
Found at i:97147726 original size:131 final size:131
Alignment explanation
Indices: 97147458--97147933 Score: 467
Period size: 131 Copynumber: 3.6 Consensus size: 131
97147448 TTATAATCAT
* * * ** *
97147458 TCATGTTTTCTAAAAATCCTTTAAAACGAAGGCGATGTTCGACATTTGGCAATTCGTGGAATCGT
1 TCATGTTTTCTAAAAATTCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTCG-AGAATCGT
* * * * * * ** * * *
97147523 GCCCTAACGTGTTGGGTTGCAATTTCTCTTTTGCACAAAATAATCGAATGTCCCTTTGGAATTTC
65 GCCCTATCGTGCTGGGTTGCGATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTC
*
97147588 AT
130 AC
* * * *
97147590 TCATGTTTTCTAAAAACTCTTTAAAATGAAGGTAATACTCGATGTTTGGCAATTCGAGAATCGTG
1 TCATGTTTTCTAAAAATTCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTCGAGAATCGTG
* *
97147655 CCCTATCGTGCTGGGTTGCGATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTAGAATATCA
66 CCCTATCGTGCTGGGTTGCGATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCA
97147720 C
131 C
* * * * * * * *
97147721 CCATGTCTT-TAAAGATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCAGGGAATTGT
1 TCATGTTTTCTAAAAATTCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTC-GAGAATCGT
* * * * *
97147785 GCCCTATCGTGCTAGGTTGCGATTTCCTGTTGGTTCAAAATAATCGAACATTCCCTTTAAAATTT
65 GCCCTATCGTGCTGGGTTGCGATTTCCCGTTCGTTCAAAATAATCGAATATT-CCTTTAGAATTT
97147850 CAC
129 CAC
* ** * * * *
97147853 TCAT-ATTTCTTAAAAATTC--TAAAAATAAGGCAATGCTCAATGTTTAGAAATTTGAGGAATCG
1 TCATGTTTTC-TAAAAATTCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTCGA-GAATCG
97147915 TGCCCTA-CTGTGCTGGGTT
64 TGCCCTATC-GTGCTGGGTT
97147934 TCAGTTTTTC
Statistics
Matches: 282, Mismatches: 56, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
130 41 0.15
131 170 0.60
132 63 0.22
133 8 0.03
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (131 bp):
TCATGTTTTCTAAAAATTCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTCGAGAATCGTG
CCCTATCGTGCTGGGTTGCGATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCA
C
Found at i:97148888 original size:35 final size:35
Alignment explanation
Indices: 97148849--97148919 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
97148839 TCTAGGATCA
* *
97148849 CATATCTTTGAAGATCCCCTTCCATATTTGCCAAG
1 CATATATTTGAAGATCACCTTCCATATTTGCCAAG
* *
97148884 CATATATTTGAAGATTACTTTCCATATTTGCCAAG
1 CATATATTTGAAGATCACCTTCCATATTTGCCAAG
97148919 C
1 C
97148920 TCCGGAGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (35 bp):
CATATATTTGAAGATCACCTTCCATATTTGCCAAG
Found at i:97151027 original size:25 final size:26
Alignment explanation
Indices: 97150954--97151029 Score: 70
Period size: 29 Copynumber: 2.9 Consensus size: 26
97150944 ACTTAGATTT
*
97150954 TAATTATAATAT-ATATATTTATTAG
1 TAATTATATTATAATATATTTATTAG
97150979 TAATAAATGATATTA-AAT-TAATTTATTA-
1 TAAT---T-ATATTATAATAT-ATTTATTAG
97151007 TAATTATATTATAATATATTTAT
1 TAATTATATTATAATATATTTAT
97151030 ATGATAAATA
Statistics
Matches: 42, Mismatches: 1, Indels: 16
0.71 0.02 0.27
Matches are distributed among these distances:
24 6 0.14
25 14 0.33
26 1 0.02
28 6 0.14
29 15 0.36
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (26 bp):
TAATTATATTATAATATATTTATTAG
Found at i:97156771 original size:16 final size:15
Alignment explanation
Indices: 97156750--97156791 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
97156740 TATAATAAAG
97156750 TTATGTAAGTCATGTA
1 TTATGTAAGT-ATGTA
*
97156766 TTATGTAAGATATTTA
1 TTATGTAAG-TATGTA
97156782 TTATGTAAGT
1 TTATGTAAGT
97156792 TATGAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 1 0.04
16 22 0.92
17 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (15 bp):
TTATGTAAGTATGTA
Found at i:97156819 original size:46 final size:46
Alignment explanation
Indices: 97156765--97156939 Score: 287
Period size: 46 Copynumber: 3.8 Consensus size: 46
97156755 TAAGTCATGT
* *
97156765 ATTATGTAAGATATTTATTATGTAAGTTATGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAA
*
97156811 ATTCTGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAA
*
97156857 ATTATGTAAGTTATGTATTATGTAAGTTTTGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAA
* *
97156903 ATTATGTAACTCATGTATTATGTAAGTTATGTAAATT
1 ATTATGTAAGTTATGTATTATGTAAGTTATG-AAATT
97156940 ATGTAAGTTA
Statistics
Matches: 120, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 115 0.96
47 5 0.04
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48
Consensus pattern (46 bp):
ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAA
Found at i:97156836 original size:16 final size:16
Alignment explanation
Indices: 97156815--97157017 Score: 111
Period size: 16 Copynumber: 13.0 Consensus size: 16
97156805 CTTTAAATTC
97156815 TGTAAGTTATGTATTA
1 TGTAAGTTATGTATTA
*
97156831 TGTAAGTTATGAAATT-
1 TGTAAGTTATG-TATTA
** **
97156847 TG-ATCTT-TAAATTA
1 TGTAAGTTATGTATTA
97156861 TGTAAGTTATGTATTA
1 TGTAAGTTATGTATTA
* *
97156877 TGTAAGTTTTGAAATT-
1 TGTAAGTTATG-TATTA
** **
97156893 TG-ATCTT-TAAATTA
1 TGTAAGTTATGTATTA
* *
97156907 TGTAACTCATGTATTA
1 TGTAAGTTATGTATTA
97156923 TGTAAGTTATGTAAATTA
1 TGTAAGTTATGT--ATTA
**
97156941 TGTAAGTTATAAAATT-
1 TGTAAGTTAT-GTATTA
** **
97156957 TG-ATCTT-TAAATTA
1 TGTAAGTTATGTATTA
97156971 TGTAAGTT-TGTATTA
1 TGTAAGTTATGTATTA
97156986 TGTAAGTTATGTATTA
1 TGTAAGTTATGTATTA
*
97157002 TATAAGTTATGTATTA
1 TGTAAGTTATGTATTA
97157018 AATAATATTT
Statistics
Matches: 145, Mismatches: 28, Indels: 28
0.72 0.14 0.14
Matches are distributed among these distances:
13 13 0.09
14 9 0.06
15 31 0.21
16 69 0.48
17 9 0.06
18 14 0.10
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.48
Consensus pattern (16 bp):
TGTAAGTTATGTATTA
Found at i:97156907 original size:30 final size:30
Alignment explanation
Indices: 97156873--97156978 Score: 99
Period size: 30 Copynumber: 3.4 Consensus size: 30
97156863 TAAGTTATGT
*
97156873 ATTATGTAAGTTTTGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGAAATTTGATCTTTAA
* * *
97156903 ATTATGTAACTCATG-TATTATGTAAGT-TATGTAA
1 ATTATGTAAGTTATGAAATT-TG--A-TCT-T-TAA
*
97156937 ATTATGTAAGTTATAAAATTTGATCTTTAA
1 ATTATGTAAGTTATGAAATTTGATCTTTAA
97156967 ATTATGTAAGTT
1 ATTATGTAAGTT
97156979 TGTATTATGT
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
29 3 0.05
30 29 0.48
31 2 0.03
32 4 0.07
33 2 0.03
34 17 0.28
35 3 0.05
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (30 bp):
ATTATGTAAGTTATGAAATTTGATCTTTAA
Found at i:97156956 original size:64 final size:61
Alignment explanation
Indices: 97156857--97157011 Score: 238
Period size: 64 Copynumber: 2.5 Consensus size: 61
97156847 TGATCTTTAA
* *
97156857 ATTATGTAAGTTATGTATTATGTAAGTTTTGAAATTTGATCTTTAAATTATGTAACTCATGT
1 ATTATGTAAGTTATGTATTATGTAAGTTATAAAATTTGATCTTTAAATTATGTAACT-ATGT
* *
97156919 ATTATGTAAGTTATGTAAATTATGTAAGTTATAAAATTTGATCTTTAAATTATGTAAGTTTGT
1 ATTATGTAAGTTATGT--ATTATGTAAGTTATAAAATTTGATCTTTAAATTATGTAACTATGT
*
97156982 ATTATGTAAGTTATGTATTATATAAGTTAT
1 ATTATGTAAGTTATGTATTATGTAAGTTAT
97157012 GTATTAAATA
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
61 13 0.15
62 16 0.19
63 19 0.22
64 38 0.44
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.48
Consensus pattern (61 bp):
ATTATGTAAGTTATGTATTATGTAAGTTATAAAATTTGATCTTTAAATTATGTAACTATGT
Found at i:97157495 original size:13 final size:13
Alignment explanation
Indices: 97157477--97157502 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97157467 TTTGATTTTT
97157477 ATATTAAAATAAA
1 ATATTAAAATAAA
97157490 ATATTAAAATAAA
1 ATATTAAAATAAA
97157503 TTTAAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATTAAAATAAA
Found at i:97158038 original size:23 final size:23
Alignment explanation
Indices: 97157990--97158042 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
97157980 GCTTGATAAG
* **
97157990 ATAAAGTATAATTTTTTTAATAT
1 ATAAAGTATAATATAATTAATAT
97158013 ATAAAGTATAATATAATTATACTAT
1 ATAAAGTATAATATAATTA-A-TAT
97158038 ATAAA
1 ATAAA
97158043 CACCAACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 16 0.64
24 1 0.04
25 8 0.32
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (23 bp):
ATAAAGTATAATATAATTAATAT
Found at i:97158306 original size:25 final size:25
Alignment explanation
Indices: 97158277--97158352 Score: 91
Period size: 25 Copynumber: 3.0 Consensus size: 25
97158267 ACAGAAAACT
*
97158277 GGAGAAGCAGCAGAGGGATGCCGAC
1 GGAGAAGTAGCAGAGGGATGCCGAC
* *
97158302 GGAGATGTAGAAGAGGGATGCCGAC
1 GGAGAAGTAGCAGAGGGATGCCGAC
* *
97158327 GGA-AATGTAGCAGAAGGCTGCCGAC
1 GGAGAA-GTAGCAGAGGGATGCCGAC
97158352 G
1 G
97158353 ACGATGCGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 1 0.02
25 42 0.98
ACGTcount: A:0.32, C:0.17, G:0.42, T:0.09
Consensus pattern (25 bp):
GGAGAAGTAGCAGAGGGATGCCGAC
Found at i:97160064 original size:345 final size:345
Alignment explanation
Indices: 97159426--97160472 Score: 1833
Period size: 345 Copynumber: 3.0 Consensus size: 345
97159416 TTATTTTATT
*
97159426 TTAAAAAATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
1 TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
97159491 TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
66 TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
97159556 TAGTTACATAGTTCAGAAACTTCCTCTTTACCTAGAATTCTGTAATAGAATATAAAACCAAACAA
131 TAGTTACATAGTTCAGAAACTTCCTCTTTACCTAGAATTCTGTAATAGAATATAAAACCAAACAA
97159621 GCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGACACAGCATCTGA
196 GCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGACACAGCATCTGA
97159686 ATGACATAGCATCAATTGCTAATACTTCTATGTAATCAATTGCTAATACTTTTCTACTGCTACTA
261 ATGACATAGCATCAATTGCTAATACTTCTATGTAATCAATTGCTAATACTTTTCTACTGCTACTA
97159751 AGAGTCTAAAGGAAGTACAA
326 AGAGTCTAAAGGAAGTACAA
97159771 TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
1 TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
97159836 TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
66 TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
97159901 TAGTTACATAGTTCAGAAACTTCCTCTTTACCTAGAATTCTGTAATAGAATATAAAACCAAACAA
131 TAGTTACATAGTTCAGAAACTTCCTCTTTACCTAGAATTCTGTAATAGAATATAAAACCAAACAA
97159966 GCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGACACAGCATCTGA
196 GCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGACACAGCATCTGA
97160031 ATGACATAGCATCAATTGCTAATACTTCTATGTAATCAATTGCTAATACTTTTCTACTGCTACTA
261 ATGACATAGCATCAATTGCTAATACTTCTATGTAATCAATTGCTAATACTTTTCTACTGCTACTA
97160096 AGAGTCTAAAGGAAGTACAA
326 AGAGTCTAAAGGAAGTACAA
97160116 TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
1 TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
* * *
97160181 TTTCGTTCAGATGCAACTCGATAAACTTACTCCTAGTTATAAAACTGAGATGAACACTAAAATTT
66 TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
* * *
97160246 TAGTTACATAGTTCAGAAAATTCCTACATCTGTGTGGCTTTACCTAGAATTCTGTAACAGAAAAT
131 TAGTTACATAGTTCAG-AAA---CT---TC---CT--CTTTACCTAGAATTCTGTAATAGAATAT
** * * * *
97160311 AAAACTGAACCAGCTGTATCAATTGCTAATGCTGTAATAGCACATTCATTTAAACTCAAACATGA
184 AAAACCAAACAAGCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGA
* *
97160376 CACAGCATCTGAATGACACAGCATCAATTGCTAATACTTCAATGTAATCAATTGCTAATACTTTT
249 CACAGCATCTGAATGACATAGCATCAATTGCTAATACTTCTATGTAATCAATTGCTAATACTTTT
* *
97160441 CTACTACTACTAAGAGCCTAAAGGAAGTACAA
314 CTACTGCTACTAAGAGTCTAAAGGAAGTACAA
97160473 AGATTGAAAA
Statistics
Matches: 673, Mismatches: 17, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
345 487 0.72
346 3 0.00
349 2 0.00
352 2 0.00
355 1 0.00
357 178 0.26
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (345 bp):
TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
TAGTTACATAGTTCAGAAACTTCCTCTTTACCTAGAATTCTGTAATAGAATATAAAACCAAACAA
GCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGACACAGCATCTGA
ATGACATAGCATCAATTGCTAATACTTCTATGTAATCAATTGCTAATACTTTTCTACTGCTACTA
AGAGTCTAAAGGAAGTACAA
Found at i:97161873 original size:8 final size:7
Alignment explanation
Indices: 97161862--97161923 Score: 54
Period size: 7 Copynumber: 8.3 Consensus size: 7
97161852 TTAATCAACT
97161862 AACCCTTA
1 AACCC-TA
97161870 AACCCTA
1 AACCCTA
97161877 ATACCCT-
1 A-ACCCTA
97161884 AACCCTTAA
1 AACCC-T-A
*
97161893 AACCTTA
1 AACCCTA
*
97161900 AACACTA
1 AACCCTA
97161907 ATACCCTA
1 A-ACCCTA
97161915 AACCCTA
1 AACCCTA
97161922 AA
1 AA
97161924 TACTTTAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
6 4 0.09
7 20 0.44
8 17 0.38
9 4 0.09
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (7 bp):
AACCCTA
Found at i:97161907 original size:22 final size:22
Alignment explanation
Indices: 97161859--97161922 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
97161849 CATTTAATCA
97161859 ACTAACCCTTAAACCCTAATAC
1 ACTAACCCTTAAACCCTAATAC
* *
97161881 CCTAACCCTTAAAACCTTAA-AC
1 ACTAACCCTT-AAACCCTAATAC
97161903 ACTAATACCC-TAAACCCTAA
1 ACT-A-ACCCTTAAACCCTAA
97161923 ATACTTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
22 21 0.60
23 10 0.29
24 4 0.11
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (22 bp):
ACTAACCCTTAAACCCTAATAC
Found at i:97161922 original size:15 final size:15
Alignment explanation
Indices: 97161863--97161922 Score: 68
Period size: 15 Copynumber: 3.9 Consensus size: 15
97161853 TAATCAACTA
97161863 ACCCTTAAACCCTAAT
1 ACCC-TAAACCCTAAT
*
97161879 ACCCT-AACCCTTAAA
1 ACCCTAAACCC-TAAT
* *
97161894 ACCTTAAACACTAAT
1 ACCCTAAACCCTAAT
97161909 ACCCTAAACCCTAA
1 ACCCTAAACCCTAA
97161923 ATACTTTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
14 5 0.14
15 23 0.64
16 8 0.22
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.22
Consensus pattern (15 bp):
ACCCTAAACCCTAAT
Found at i:97162251 original size:21 final size:20
Alignment explanation
Indices: 97162227--97162296 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 20
97162217 GGTTTAAGGT
97162227 TTTAGAGTTTATGGATTACTA
1 TTTAGAGTTTATGG-TTACTA
* *
97162248 TTTAGGGTTTA-GG---GT-
1 TTTAGAGTTTATGGTTACTA
97162263 TTTAGAGTTTATAGGTTACTA
1 TTTAGAGTTTAT-GGTTACTA
*
97162284 TTTAGGGTTTATG
1 TTTAGAGTTTATG
97162297 TTTTTTACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 13
0.68 0.09 0.23
Matches are distributed among these distances:
15 10 0.26
16 1 0.03
17 2 0.05
20 4 0.11
21 21 0.55
ACGTcount: A:0.23, C:0.03, G:0.26, T:0.49
Consensus pattern (20 bp):
TTTAGAGTTTATGGTTACTA
Found at i:97162264 original size:36 final size:36
Alignment explanation
Indices: 97162211--97162294 Score: 134
Period size: 36 Copynumber: 2.3 Consensus size: 36
97162201 ATATGAATTT
97162211 TTTAGGGGTTTAAGGTTTTAGAGTTTAT-GGATTACTA
1 TTTA-GGGTTTAAGGTTTTAGAGTTTATAGG-TTACTA
*
97162248 TTTAGGGTTTAGGGTTTTAGAGTTTATAGGTTACTA
1 TTTAGGGTTTAAGGTTTTAGAGTTTATAGGTTACTA
97162284 TTTAGGGTTTA
1 TTTAGGGTTTA
97162295 TGTTTTTTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 39 0.87
37 6 0.13
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (36 bp):
TTTAGGGTTTAAGGTTTTAGAGTTTATAGGTTACTA
Found at i:97162618 original size:82 final size:82
Alignment explanation
Indices: 97162544--97162929 Score: 469
Period size: 82 Copynumber: 4.7 Consensus size: 82
97162534 CGTTTGGGCT
*
97162544 TAAAAACGCCGCTATTGATCAG-TTTTAGTGGCGCTTGGACAAAAACGCCGCTATTTCTCCAGTT
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACGCCGCTATTTCTCCAGTT
*
97162608 TTTAGTGGCGTTTTGGA
66 TTTAGTGGCGTTTTAGA
* *
97162625 TAAAAATGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACGCCGCTATTTCTCTAGTT
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACGCCGCTATTTCTCCAGTT
97162690 TTTCA-TGGCGTTTTAGA
66 TTT-AGTGGCGTTTTAGA
** * * *
97162707 TAAAAACGCTTCTATTGATTAG-TTTTAGTGGCGTTTGGGAAAAAAACGCCGCTATTTCCCCAGT
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTT-GGACAAAAACGCCGCTATTTCTCCAGT
*
97162771 TTTTAGTGGCG-TTTAGT
65 TTTTAGTGGCGTTTTAGA
* * * * ** *
97162788 TAAAAACGCCGCTATTGATCTGTTTTTAGTAGCGTTTTAGACAAAAACACCGCTATTGATCTA-T
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG-TTTGGACAAAAACGCCGCTATTTCTCCAGT
*
97162852 TTTTAGTGGCATTTTAGA
65 TTTTAGTGGCGTTTTAGA
* * * * * *
97162870 CAAAAACGTCGTTATTGAT-ATGTTTTTAGTGGCGTTTTAGATAAAAACGCCGTTATTTCT
1 TAAAAACGCCGCTATTGATCA-GTTTTTAGTGGCG-TTTGGACAAAAACGCCGCTATTTCT
97162930 TCTTTTTTTG
Statistics
Matches: 261, Mismatches: 36, Indels: 15
0.84 0.12 0.05
Matches are distributed among these distances:
81 70 0.27
82 187 0.72
83 4 0.02
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (82 bp):
TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACGCCGCTATTTCTCCAGTT
TTTAGTGGCGTTTTAGA
Found at i:97162648 original size:41 final size:41
Alignment explanation
Indices: 97162544--97162926 Score: 386
Period size: 41 Copynumber: 9.4 Consensus size: 41
97162534 CGTTTGGGCT
* *
97162544 TAAAAACGCCGCTATTGATCAG-TTTTAGTGGCG-CTTGGA
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
* ** *
97162583 CAAAAACGCCGCTATTTCTCCAGTTTTTAGTGGCGTTTTGGA
1 TAAAAACGCCGCTATTGAT-CAGTTTTTAGTGGCGTTTTAGA
* *
97162625 TAAAAATGCCGCTATTGATCAGTTTTTAGTGGCG-TTTGGA
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
* **
97162665 CAAAAACGCCGCTATTTCTCTAGTTTTTCA-TGGCGTTTTAGA
1 TAAAAACGCCGCTATTGATC-AGTTTTT-AGTGGCGTTTTAGA
** * **
97162707 TAAAAACGCTTCTATTGATTAG-TTTTAGTGGCGTTTGGGA
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
* *** *
97162747 AAAAAACGCCGCTATTTCCCCAGTTTTTAGTGGCG-TTTAGT
1 TAAAAACGCCGCTA-TTGATCAGTTTTTAGTGGCGTTTTAGA
* *
97162788 TAAAAACGCCGCTATTGATCTGTTTTTAGTAGCGTTTTAGA
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
* * *
97162829 CAAAAACACCGCTATTGATCTA-TTTTTAGTGGCATTTTAGA
1 TAAAAACGCCGCTATTGATC-AGTTTTTAGTGGCGTTTTAGA
* * *
97162870 CAAAAACGTCGTTATTGAT-ATGTTTTTAGTGGCGTTTTAGA
1 TAAAAACGCCGCTATTGATCA-GTTTTTAGTGGCGTTTTAGA
*
97162911 TAAAAACGCCGTTATT
1 TAAAAACGCCGCTATT
97162927 TCTTCTTTTT
Statistics
Matches: 282, Mismatches: 49, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
39 18 0.06
40 65 0.23
41 148 0.52
42 51 0.18
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (41 bp):
TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
Found at i:97162807 original size:163 final size:163
Alignment explanation
Indices: 97162544--97162928 Score: 483
Period size: 163 Copynumber: 2.3 Consensus size: 163
97162534 CGTTTGGGCT
* * * * *
97162544 TAAAAACGCCGCTATTGATCAGTTTTAGTGGCGCTTGGACAAAAACGCCGCTATTTCTCCAGTTT
1 TAAAAACGCCTCTATTGATTAGTTTTAGTGGCGTTTGGAAAAAAACGCCGCTATTTCCCCAGTTT
* * * * *
97162609 TTAGTGGCGTTTTGGATAAAAATGCCGCTATTGATCAGTTTTTAGTGGCG-TTTGGACAAAAACG
66 TTAGTGGCGTTTTAGATAAAAACGCCGCTATTGATCAGTTTTTAGTAGCGTTTTAGACAAAAACA
** *
97162673 CCGCTATTTCTCTAGTTTTTCA-TGGCGTTTTAGA
131 CCGCTATTGATCTA-TTTTT-AGTGGCATTTTAGA
*
97162707 TAAAAACGCTTCTATTGATTAGTTTTAGTGGCGTTTGGGAAAAAAACGCCGCTATTTCCCCAGTT
1 TAAAAACGCCTCTATTGATTAGTTTTAGTGGCGTTT-GGAAAAAAACGCCGCTATTTCCCCAGTT
* *
97162772 TTTAGTGGCG-TTTAGTTAAAAACGCCGCTATTGATCTGTTTTTAGTAGCGTTTTAGACAAAAAC
65 TTTAGTGGCGTTTTAGATAAAAACGCCGCTATTGATCAGTTTTTAGTAGCGTTTTAGACAAAAAC
97162836 ACCGCTATTGATCTATTTTTAGTGGCATTTTAGA
130 ACCGCTATTGATCTATTTTTAGTGGCATTTTAGA
* * * * *
97162870 CAAAAACGTCGT-TATTGA-TATGTTTTTAGTGGCGTTTTAGATAAAAACGCCGTTATTTC
1 TAAAAACG-CCTCTATTGATTA-G-TTTTAGTGGCG-TTTGGAAAAAAACGCCGCTATTTC
97162929 TTCTTTTTTT
Statistics
Matches: 194, Mismatches: 21, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
162 3 0.02
163 97 0.50
164 91 0.47
165 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.37
Consensus pattern (163 bp):
TAAAAACGCCTCTATTGATTAGTTTTAGTGGCGTTTGGAAAAAAACGCCGCTATTTCCCCAGTTT
TTAGTGGCGTTTTAGATAAAAACGCCGCTATTGATCAGTTTTTAGTAGCGTTTTAGACAAAAACA
CCGCTATTGATCTATTTTTAGTGGCATTTTAGA
Found at i:97169278 original size:9 final size:9
Alignment explanation
Indices: 97169264--97169315 Score: 50
Period size: 9 Copynumber: 5.3 Consensus size: 9
97169254 TATTAATGGT
97169264 AATATTAAA
1 AATATTAAA
97169273 AATATTAAA
1 AATATTAAA
*
97169282 AATAAATTTAA
1 AAT--ATTAAA
*
97169293 ATTCAATTAAA
1 AAT--ATTAAA
97169304 AATATTAAA
1 AATATTAAA
97169313 AAT
1 AAT
97169316 TAATTTATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
9 21 0.58
11 15 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (9 bp):
AATATTAAA
Found at i:97169920 original size:16 final size:16
Alignment explanation
Indices: 97169899--97169958 Score: 66
Period size: 16 Copynumber: 3.5 Consensus size: 16
97169889 ATTAATTATT
97169899 TTTTAAAAATTAAAAA
1 TTTTAAAAATTAAAAA
97169915 TTTTAAAAATTATTAAAA
1 TTTTAAAAATTA--AAAA
*
97169933 TTATTAAAAATATAAGAA
1 TT-TTAAAAAT-TAAAAA
*
97169951 TTCTAAAA
1 TTTTAAAA
97169959 TATATATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
16 12 0.32
17 5 0.13
18 11 0.29
19 8 0.21
20 2 0.05
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (16 bp):
TTTTAAAAATTAAAAA
Found at i:97169922 original size:9 final size:9
Alignment explanation
Indices: 97169899--97169943 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
97169889 ATTAATTATT
97169899 TTTTAAAAA
1 TTTTAAAAA
97169908 --TTAAAAA
1 TTTTAAAAA
97169915 TTTTAAAAA
1 TTTTAAAAA
97169924 TTATT-AAAA
1 TT-TTAAAAA
97169933 TTATTAAAAA
1 TT-TTAAAAA
97169943 T
1 T
97169944 ATAAGAATTC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
7 7 0.22
9 18 0.56
10 7 0.22
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:97169952 original size:18 final size:16
Alignment explanation
Indices: 97169899--97169964 Score: 62
Period size: 18 Copynumber: 3.8 Consensus size: 16
97169889 ATTAATTATT
97169899 TTTTAAAAAT-TAAAAA
1 TTTTAAAAATAT-AAAA
97169915 TTTTAAAAATTATTAAAA
1 TTTTAAAAA-TA-TAAAA
97169933 TTATTAAAAATATAAGAA
1 TT-TTAAAAATATAA-AA
*
97169951 TTCTAAAATATATA
1 TTTTAAAA-ATATA
97169965 TTTTAATATT
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
16 9 0.21
17 9 0.21
18 17 0.40
19 8 0.19
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (16 bp):
TTTTAAAAATATAAAA
Found at i:97170633 original size:33 final size:32
Alignment explanation
Indices: 97170608--97170691 Score: 86
Period size: 32 Copynumber: 2.8 Consensus size: 32
97170598 AAAAAAGGTT
* *
97170608 TTAGGTTCGTTAAAAGTTAAAAAAAAAAATTA
1 TTAGGTACCTTAAAAGTTAAAAAAAAAAATTA
**
97170640 TTAGGTACCTTAAAAGTT-AGTAAAAAAA-T-
1 TTAGGTACCTTAAAAGTTAAAAAAAAAAATTA
* *
97170669 TTAGG-CCCTTAAAAATTAAAAAA
1 TTAGGTACCTTAAAAGTTAAAAAA
97170692 TAATATTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
28 10 0.23
29 8 0.19
30 1 0.02
31 8 0.19
32 16 0.37
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (32 bp):
TTAGGTACCTTAAAAGTTAAAAAAAAAAATTA
Found at i:97171885 original size:80 final size:81
Alignment explanation
Indices: 97171752--97171902 Score: 286
Period size: 80 Copynumber: 1.9 Consensus size: 81
97171742 GAGGAAAATT
*
97171752 TATATATTAAATATAATGATTATAATAATACTATGTTAAATGTAAGTTTACTCTTCTTT-AAAAA
1 TATATAATAAATATAATGATTATAATAATACTATGTTAAATGTAAGTTTACTCTTCTTTGAAAAA
97171816 AATTTACTATATTAAA
66 AATTTACTATATTAAA
97171832 TATATAATAAATATAATGATTATAATAATACTATGTTAAATGTAAGTTTACTCTTCTTTGAAAAA
1 TATATAATAAATATAATGATTATAATAATACTATGTTAAATGTAAGTTTACTCTTCTTTGAAAAA
97171897 AATTTA
66 AATTTA
97171903 GAGTCATATT
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
80 58 0.84
81 11 0.16
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (81 bp):
TATATAATAAATATAATGATTATAATAATACTATGTTAAATGTAAGTTTACTCTTCTTTGAAAAA
AATTTACTATATTAAA
Done.