Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 306 of 325
Found at i:97174496 original size:40 final size:40
Alignment explanation
Indices: 97174436--97174519 Score: 150
Period size: 40 Copynumber: 2.1 Consensus size: 40
97174426 CTTGTGTGAG
* *
97174436 TAACCTAGATTTTAAGGCTTGTGTGAACCATTTCATTACC
1 TAACCCAGATTTTAAAGCTTGTGTGAACCATTTCATTACC
97174476 TAACCCAGATTTTAAAGCTTGTGTGAACCATTTCATTACC
1 TAACCCAGATTTTAAAGCTTGTGTGAACCATTTCATTACC
97174516 TAAC
1 TAAC
97174520 GCTTGTGCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (40 bp):
TAACCCAGATTTTAAAGCTTGTGTGAACCATTTCATTACC
Found at i:97174551 original size:28 final size:28
Alignment explanation
Indices: 97174486--97174552 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
97174476 TAACCCAGAT
**
97174486 TTTAAAGCTTGTGTGAACCATTTCATTA
1 TTTAAAGCTTGTGCAAACCATTTCATTA
** *
97174514 CCTAACGCTTGTGCAAACCATTTCATTA
1 TTTAAAGCTTGTGCAAACCATTTCATTA
*
97174542 TTTAAGGCTTG
1 TTTAAAGCTTG
97174553 CGAGAGCCAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (28 bp):
TTTAAAGCTTGTGCAAACCATTTCATTA
Found at i:97176555 original size:25 final size:26
Alignment explanation
Indices: 97176506--97176560 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
97176496 AATGATGACG
97176506 AAAACAATAATAATAGCAATAGTA-T
1 AAAACAATAATAATAGCAATAGTATT
* *
97176531 AAAACGATAATAATA-CATATGGTATT
1 AAAACAATAATAATAGCA-ATAGTATT
97176557 AAAA
1 AAAA
97176561 TATATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.08
25 19 0.73
26 5 0.19
ACGTcount: A:0.58, C:0.07, G:0.09, T:0.25
Consensus pattern (26 bp):
AAAACAATAATAATAGCAATAGTATT
Found at i:97178852 original size:78 final size:78
Alignment explanation
Indices: 97178707--97178849 Score: 209
Period size: 77 Copynumber: 1.8 Consensus size: 78
97178697 CCTCTTTGAT
97178707 CTGTTTCCCTACTACTTAGGGGGTTAAGATCTTCAAAATTCAACTTGTTACCCTACTGCTTAGGG
1 CTGTTTCCCTACTACTTAGGGGGTTAAGATCTTCAAAATTCAACTTGTTACCCTACTGCTTAGGG
97178772 GTTAAAGCTCGAC
66 GTTAAAGCTCGAC
* * *** *
97178785 CTGTTTCCCTACTACTTAGGGGTTTAA-AGT-TTGAAAATTTGTCTTGTTACCCTATTGCTTAGG
1 CTGTTTCCCTACTACTTAGGGGGTTAAGA-TCTTCAAAATTCAACTTGTTACCCTACTGCTTAGG
97178848 GG
65 GG
97178850 GTTGAAGCCC
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
77 31 0.53
78 27 0.47
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (78 bp):
CTGTTTCCCTACTACTTAGGGGGTTAAGATCTTCAAAATTCAACTTGTTACCCTACTGCTTAGGG
GTTAAAGCTCGAC
Found at i:97190699 original size:37 final size:37
Alignment explanation
Indices: 97190638--97190783 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
97190628 TACGTATGAT
* *
97190638 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
97190673 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
97190710 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
97190747 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
97190784 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:97190800 original size:46 final size:46
Alignment explanation
Indices: 97190747--97191015 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
97190737 TAAGTGTAGC
* **
97190747 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
97190793 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
97190839 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
97190891 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
97190937 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
97190989 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
97191016 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:97190866 original size:52 final size:52
Alignment explanation
Indices: 97190790--97191009 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
97190780 TAGCTAAAGC
* *
97190790 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
97190843 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
97190895 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
97190941 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
97190993 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
97191010 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:97190912 original size:98 final size:98
Alignment explanation
Indices: 97190747--97191015 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
97190737 TAAGTGTAGC
* * *
97190747 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
97190812 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
97190846 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
97190911 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
97190944 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
97191009 GATCAGA
66 GATCAGA
97191016 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:97194018 original size:25 final size:26
Alignment explanation
Indices: 97193969--97194023 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
97193959 AATGATGACG
97193969 AAAACAATAATAATAGCAATAGTA-T
1 AAAACAATAATAATAGCAATAGTATT
* *
97193994 AAAACGATAATAATA-CATATGGTATT
1 AAAACAATAATAATAGCA-ATAGTATT
97194020 AAAA
1 AAAA
97194024 TATATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.08
25 19 0.73
26 5 0.19
ACGTcount: A:0.58, C:0.07, G:0.09, T:0.25
Consensus pattern (26 bp):
AAAACAATAATAATAGCAATAGTATT
Found at i:97196737 original size:29 final size:29
Alignment explanation
Indices: 97196695--97196755 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
97196685 ATGAGCTTGG
97196695 AATTTTATCCAAGCTCTCCTATATTTGTA
1 AATTTTATCCAAGCTCTCCTATATTTGTA
* *
97196724 AATTTTATCTAAGCTTTCCTATATTTGTA
1 AATTTTATCCAAGCTCTCCTATATTTGTA
97196753 AAT
1 AAT
97196756 GACTAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.48
Consensus pattern (29 bp):
AATTTTATCCAAGCTCTCCTATATTTGTA
Found at i:97196769 original size:30 final size:29
Alignment explanation
Indices: 97196705--97196769 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
97196695 AATTTTATCC
* * *
97196705 AAGCTCTCCTATATTTGTAAATTTTATCT
1 AAGCTTTCCTATATTTGTAAATCTAATCT
97196734 AAGCTTTCCTATATTTGTAAATGACTAAT-T
1 AAGCTTTCCTATATTTGTAAAT--CTAATCT
97196764 AAGCTT
1 AAGCTT
97196770 GTTTTAGGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 21 0.68
30 7 0.23
31 3 0.10
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.45
Consensus pattern (29 bp):
AAGCTTTCCTATATTTGTAAATCTAATCT
Found at i:97197469 original size:15 final size:12
Alignment explanation
Indices: 97197429--97197468 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
97197419 TATAAAAAAA
97197429 ATTA-AAATTTT
1 ATTATAAATTTT
97197440 ATTATAAATTTT
1 ATTATAAATTTT
97197452 ATTATAAATTTT
1 ATTATAAATTTT
*
97197464 TTTAT
1 ATTAT
97197469 TTTAACTCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 4 0.15
12 23 0.85
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
ATTATAAATTTT
Found at i:97217095 original size:14 final size:14
Alignment explanation
Indices: 97217072--97217105 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
97217062 TAGAAGGTTG
97217072 TTTT-CATGATGAT
1 TTTTACATGATGAT
97217085 TTTTACATGATGAT
1 TTTTACATGATGAT
97217099 TTTTACA
1 TTTTACA
97217106 AAATCTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53
Consensus pattern (14 bp):
TTTTACATGATGAT
Found at i:97223482 original size:20 final size:20
Alignment explanation
Indices: 97223457--97223521 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
97223447 ACATCAGTAT
*
97223457 TTTTATCTTGAATTTCAAGA
1 TTTTATCTTGAATTTTAAGA
* *
97223477 TTTTATCCTGAATTTTAGGA
1 TTTTATCTTGAATTTTAAGA
*
97223497 TTTTATCTTGAATTTTAATA
1 TTTTATCTTGAATTTTAAGA
97223517 TTTTA
1 TTTTA
97223522 ATTTAGATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.28, C:0.08, G:0.09, T:0.55
Consensus pattern (20 bp):
TTTTATCTTGAATTTTAAGA
Found at i:97227618 original size:31 final size:31
Alignment explanation
Indices: 97227583--97227648 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
97227573 AAAAGAACTA
97227583 AATTTAACCATCAACATTTAAAAAAGAGTCG
1 AATTTAACCATCAACATTTAAAAAAGAGTCG
* * * * *
97227614 AATTTAATCATTAACTTTTTAAAAAGAGTTG
1 AATTTAACCATCAACATTTAAAAAAGAGTCG
97227645 AATT
1 AATT
97227649 GTTTTTTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.35
Consensus pattern (31 bp):
AATTTAACCATCAACATTTAAAAAAGAGTCG
Found at i:97228307 original size:18 final size:18
Alignment explanation
Indices: 97228271--97228307 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
97228261 TGAGTTTTTG
* *
97228271 AATTCGAATAACTCGAAT
1 AATTCGAATAAATCAAAT
97228289 AATTCGAATAAATCAAAT
1 AATTCGAATAAATCAAAT
97228307 A
1 A
97228308 TCAAACTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.27
Consensus pattern (18 bp):
AATTCGAATAAATCAAAT
Found at i:97228371 original size:22 final size:22
Alignment explanation
Indices: 97228341--97228397 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
97228331 TTACCCCAAA
*
97228341 CTCCC-AAACTTTTTTACTTTTC
1 CTCCCAAAACTTTTTCAC-TTTC
* *
97228363 C-CTCAAAACTTTCTCACTTTC
1 CTCCCAAAACTTTTTCACTTTC
97228384 CTCCCAAAACTTTT
1 CTCCCAAAACTTTT
97228398 ACTCCTCTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 7 0.25
22 21 0.75
ACGTcount: A:0.23, C:0.35, G:0.00, T:0.42
Consensus pattern (22 bp):
CTCCCAAAACTTTTTCACTTTC
Found at i:97228562 original size:30 final size:30
Alignment explanation
Indices: 97228511--97228583 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 30
97228501 AAAGTTTTTT
*
97228511 ATTTTCCCCCAAAATTTTTACTCCC-TCCC
1 ATTTTCCCCCAAAACTTTTACTCCCTTCCC
*
97228540 ATTTTCCCCCTATAACTTTTACTCCCTTCCC
1 ATTTTCCCCC-AAAACTTTTACTCCCTTCCC
*
97228571 ATCTTACCCCCAA
1 AT-TTTCCCCCAA
97228584 TCTACCCCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 10 0.27
30 13 0.35
31 7 0.19
32 7 0.19
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (30 bp):
ATTTTCCCCCAAAACTTTTACTCCCTTCCC
Found at i:97230989 original size:15 final size:16
Alignment explanation
Indices: 97230956--97230988 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
97230946 ACCATGTGCC
*
97230956 TTATTTTTTTATATTT
1 TTATTTTTTAATATTT
97230972 TTATTTTTTAATATTT
1 TTATTTTTTAATATTT
97230988 T
1 T
97230989 ACTATGCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TTATTTTTTAATATTT
Found at i:97232408 original size:13 final size:13
Alignment explanation
Indices: 97232390--97232418 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
97232380 TTTAATAATG
97232390 AAAAGTTTTCTTC
1 AAAAGTTTTCTTC
97232403 AAAAGTTTTCTTC
1 AAAAGTTTTCTTC
97232416 AAA
1 AAA
97232419 TACCAAGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (13 bp):
AAAAGTTTTCTTC
Found at i:97235413 original size:11 final size:11
Alignment explanation
Indices: 97235397--97235421 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
97235387 TATATTTGTG
97235397 TAAATAATAAA
1 TAAATAATAAA
97235408 TAAATAATAAA
1 TAAATAATAAA
97235419 TAA
1 TAA
97235422 TAAATGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAAATAATAAA
Found at i:97238667 original size:32 final size:32
Alignment explanation
Indices: 97238631--97238692 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
97238621 TTAGACCGTC
* *
97238631 TGAATTATCAAATTAAATTAATTAATTTATCA
1 TGAATTATCAAATTAAAGTAATCAATTTATCA
* * *
97238663 TGAATTGTTAAATTCAAGTAATCAATTTAT
1 TGAATTATCAAATTAAAGTAATCAATTTAT
97238693 AAGTTTATGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (32 bp):
TGAATTATCAAATTAAAGTAATCAATTTATCA
Found at i:97246347 original size:20 final size:20
Alignment explanation
Indices: 97246322--97246359 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97246312 ACATAATTAA
*
97246322 ATTTTTTATATTATTTATTT
1 ATTTTTGATATTATTTATTT
*
97246342 ATTTTTGGTATTATTTAT
1 ATTTTTGATATTATTTAT
97246360 ACCGGTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (20 bp):
ATTTTTGATATTATTTATTT
Found at i:97247933 original size:24 final size:24
Alignment explanation
Indices: 97247811--97247961 Score: 117
Period size: 26 Copynumber: 6.2 Consensus size: 24
97247801 ACAAAAGCAT
* *
97247811 ATATAAAACAATTTGAAGTAAATA
1 ATATAAAACAATTTAAAATAAATA
**
97247835 GCATAAAACAATTTAAAATAAATA
1 ATATAAAACAATTTAAAATAAATA
* * *
97247859 ATGTGTAAAACAAATTAAAACAAATA
1 A--TATAAAACAATTTAAAATAAATA
*
97247885 ATATACGAAGCAATTTAAAATAAATA
1 ATATA--AAACAATTTAAAATAAATA
* **
97247911 ATATAAGACAATTTAAAGCAAAT-
1 ATATAAAACAATTTAAAATAAATA
* * * *
97247934 A-AGAAGACAATTTTAAATGAATA
1 ATATAAAACAATTTAAAATAAATA
97247957 ATATA
1 ATATA
97247962 TAGAAAAACA
Statistics
Matches: 98, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
22 16 0.16
23 2 0.02
24 39 0.40
26 41 0.42
ACGTcount: A:0.59, C:0.07, G:0.08, T:0.26
Consensus pattern (24 bp):
ATATAAAACAATTTAAAATAAATA
Found at i:97248566 original size:7 final size:7
Alignment explanation
Indices: 97248552--97248623 Score: 76
Period size: 7 Copynumber: 10.4 Consensus size: 7
97248542 AGTATTGAGG
97248552 ATTGAAA
1 ATTGAAA
*
97248559 ATTCAAA
1 ATTGAAA
97248566 ATTGAAA
1 ATTGAAA
97248573 ATTGAAA
1 ATTGAAA
97248580 ATTGAAA
1 ATTGAAA
97248587 ATAT-AAA
1 AT-TGAAA
*
97248594 ATTGGAA
1 ATTGAAA
*
97248601 ATTG-AG
1 ATTGAAA
*
97248607 ATTGAAG
1 ATTGAAA
*
97248614 ATTGAGA
1 ATTGAAA
97248621 ATT
1 ATT
97248624 TAGAAAGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
6 6 0.11
7 49 0.88
8 1 0.02
ACGTcount: A:0.51, C:0.01, G:0.17, T:0.31
Consensus pattern (7 bp):
ATTGAAA
Found at i:97249091 original size:32 final size:31
Alignment explanation
Indices: 97249055--97249124 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
97249045 TCCTATTTCT
*
97249055 GTCATTCATTTTTAAAAAAAATTGTT-ATTTTA
1 GTCATTC-TTGTT-AAAAAAATTGTTAATTTTA
* * *
97249087 GTCATTCTTGTTAGATAAGTTGTTAATTTTA
1 GTCATTCTTGTTAAAAAAATTGTTAATTTTA
97249118 GTCATTC
1 GTCATTC
97249125 CCGTTTGACA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 9 0.27
31 17 0.52
32 7 0.21
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50
Consensus pattern (31 bp):
GTCATTCTTGTTAAAAAAATTGTTAATTTTA
Found at i:97249138 original size:31 final size:31
Alignment explanation
Indices: 97249076--97249150 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 31
97249066 TTAAAAAAAA
** *
97249076 TTGTT-ATTTTAGTCATTCTTGTTAGATAAG
1 TTGTTAATTTTAGTCATTCCCGTTAGACAAG
*
97249106 TTGTTAATTTTAGTCATTCCCGTTTGACAAG
1 TTGTTAATTTTAGTCATTCCCGTTAGACAAG
* *
97249137 TTGTCAAATTTAGT
1 TTGTTAATTTTAGT
97249151 TACTCTACTA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
30 5 0.13
31 33 0.87
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.49
Consensus pattern (31 bp):
TTGTTAATTTTAGTCATTCCCGTTAGACAAG
Found at i:97250511 original size:20 final size:20
Alignment explanation
Indices: 97250488--97250535 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
97250478 TATTAAAATA
* * *
97250488 TTATTTTTTTAATTAATTGT
1 TTATTATTTAAATCAATTGT
97250508 TTATATATTTAAATCAATTGT
1 TTAT-TATTTAAATCAATTGT
97250529 TATATTA
1 T-TATTA
97250536 AAATATTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 4 0.17
21 16 0.70
22 3 0.13
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (20 bp):
TTATTATTTAAATCAATTGT
Found at i:97250532 original size:53 final size:53
Alignment explanation
Indices: 97250470--97250610 Score: 187
Period size: 52 Copynumber: 2.6 Consensus size: 53
97250460 GTTTTGAATA
*
97250470 AATTGTTATATTAAAATATTATTTTTTTAAT-TAATTGTTTATATATTTAAATC
1 AATTGTTATATTAAAATATTATTTTTTTAATCT-ATTATTTATATATTTAAATC
*
97250523 AATTGTTATATTAAAATATTA-TTTTTTAATCTTTTATTTATATATTTAAATC
1 AATTGTTATATTAAAATATTATTTTTTTAATCTATTATTTATATATTTAAATC
* *
97250575 AATTGTTACAATGAAATATATATATATTTTTTAATC
1 AATTGTTA-TATTAAA-ATAT-TAT-TTTTTTAATC
97250611 GATTGTTATA
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
52 35 0.45
53 27 0.35
54 4 0.05
55 2 0.03
57 10 0.13
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (53 bp):
AATTGTTATATTAAAATATTATTTTTTTAATCTATTATTTATATATTTAAATC
Found at i:97251742 original size:28 final size:28
Alignment explanation
Indices: 97251702--97251758 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
97251692 AGCTCTCTAC
97251702 TAAGAAAGAGGTCCTCGGTTCAGAATTG
1 TAAGAAAGAGGTCCTCGGTTCAGAATTG
97251730 TAAGAAAGAGGTCCTCGGTTCAGAATTG
1 TAAGAAAGAGGTCCTCGGTTCAGAATTG
97251758 T
1 T
97251759 GCCATGCTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (28 bp):
TAAGAAAGAGGTCCTCGGTTCAGAATTG
Found at i:97252510 original size:15 final size:16
Alignment explanation
Indices: 97252484--97252513 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
97252474 TCTTAAGCAT
97252484 CTCAGTGAAGATGACA
1 CTCAGTGAAGATGACA
97252500 CTCAG-GAAGATGAC
1 CTCAGTGAAGATGAC
97252514 GATACCCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.37, C:0.20, G:0.27, T:0.17
Consensus pattern (16 bp):
CTCAGTGAAGATGACA
Found at i:97260628 original size:7 final size:7
Alignment explanation
Indices: 97260594--97260632 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
97260584 TCAATTTTAA
97260594 AAAATAG
1 AAAATAG
97260601 AAAAT-G
1 AAAATAG
*
97260607 AAAATTG
1 AAAATAG
*
97260614 ATAATAG
1 AAAATAG
97260621 AAAATAG
1 AAAATAG
97260628 AAAAT
1 AAAAT
97260633 TTTTTTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 6 0.21
7 22 0.79
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.21
Consensus pattern (7 bp):
AAAATAG
Found at i:97262906 original size:45 final size:45
Alignment explanation
Indices: 97262852--97263003 Score: 286
Period size: 45 Copynumber: 3.4 Consensus size: 45
97262842 ACAGTCCAAT
*
97262852 TGGCAAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
1 TGGCGAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
97262897 TGGCGAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
1 TGGCGAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
*
97262942 TGGCGAACAACATAAATAGCGAACAATTCAATTGGCAAACACACA
1 TGGCGAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
97262987 TGGCGAACAACATAAAT
1 TGGCGAACAACATAAAT
97263004 GGTAAACACA
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 105 1.00
ACGTcount: A:0.46, C:0.22, G:0.16, T:0.16
Consensus pattern (45 bp):
TGGCGAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
Found at i:97283622 original size:23 final size:22
Alignment explanation
Indices: 97283571--97283624 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
97283561 ATACTACATC
97283571 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
97283590 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
97283613 AATATGTACATA
1 AATATGTACATA
97283625 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:97283671 original size:22 final size:24
Alignment explanation
Indices: 97283587--97283672 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
97283577 TACATATATA
* *
97283587 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
97283610 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
97283635 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
97283658 -AAGATATATACATAA
1 AAAAATATATACATAA
97283673 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:97283727 original size:25 final size:25
Alignment explanation
Indices: 97283693--97283824 Score: 98
Period size: 25 Copynumber: 5.6 Consensus size: 25
97283683 AGAAAAATAT
97283693 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
97283718 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
** * *
97283743 ATATATACGTAATATAAAATTTAA-
1 ATATATAAATAATATAATATTAAAG
** *
97283767 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
97283789 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
97283812 AAATAT-AATAATA
1 ATATATAAATAATA
97283825 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 24 0.29
24 6 0.07
25 38 0.45
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:97283806 original size:50 final size:50
Alignment explanation
Indices: 97283685--97283807 Score: 124
Period size: 50 Copynumber: 2.4 Consensus size: 50
97283675 TAACATGTAG
*
97283685 AAAAATATATATATAAATAATATAATATTAAAGATATATAAATAAAATAGT
1 AAAAA-ATATATATAAATAATATAAAATTAAAGATATATAAATAAAATAGT
* ** * ** * *
97283736 ATAAAATATATATACGTAATATAAAATTTAA-A-ATATACCTAATATATT
1 AAAAAATATATATAAATAATATAAAATTAAAGATATATAAATAAAATAGT
97283784 AAAAGAATATATATAATATAATAT
1 AAAA-AATATATATAA-ATAATAT
97283808 TAAGAAATAT
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
48 15 0.26
49 11 0.19
50 28 0.48
51 4 0.07
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.35
Consensus pattern (50 bp):
AAAAAATATATATAAATAATATAAAATTAAAGATATATAAATAAAATAGT
Found at i:97284121 original size:17 final size:17
Alignment explanation
Indices: 97284086--97284117 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
97284076 TTTTGATTAA
97284086 TCTCCAAAAAACTAGCT
1 TCTCCAAAAAACTAGCT
97284103 TCTCC-AAAAACTAGC
1 TCTCCAAAAAACTAGC
97284118 CTTCACAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.41, C:0.31, G:0.06, T:0.22
Consensus pattern (17 bp):
TCTCCAAAAAACTAGCT
Found at i:97284384 original size:30 final size:30
Alignment explanation
Indices: 97284304--97284416 Score: 167
Period size: 30 Copynumber: 3.8 Consensus size: 30
97284294 TAGGTACAAG
* * *
97284304 TGGTGGTGG-AAAGGTGTAGCTGGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
97284333 TGGTGGTGGAAAA-GAGTGGCTAGTGCAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
97284362 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
97284392 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
97284417 TGAGAAAAGT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
29 34 0.45
30 41 0.55
ACGTcount: A:0.21, C:0.04, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:97284395 original size:59 final size:59
Alignment explanation
Indices: 97284304--97284416 Score: 192
Period size: 59 Copynumber: 1.9 Consensus size: 59
97284294 TAGGTACAAG
*
97284304 TGGTGGTGGAAAGGTGTAGCTGGTGGAGTTGGTGGTGGAAAA-GAGTGGCTAGTGCAGT
1 TGGTGGTGGAAAGGTGTAGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGCAGT
*
97284362 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGG-AAAGGTGTAGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
97284417 TGAGAAAAGT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
58 9 0.18
59 31 0.61
60 11 0.22
ACGTcount: A:0.21, C:0.04, G:0.49, T:0.26
Consensus pattern (59 bp):
TGGTGGTGGAAAGGTGTAGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGCAGT
Found at i:97285287 original size:77 final size:76
Alignment explanation
Indices: 97285128--97285335 Score: 307
Period size: 77 Copynumber: 2.8 Consensus size: 76
97285118 TGTGAACCCA
* * * *
97285128 AGGCTCAACTCACATCTCGCAATATGAGTTGA---TTTTTGAAAAACAGAAATTTAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAA-TTGAAAATACCT
97285190 CAGCGTGTCCTG
65 CAGCGTGTCCTG
*
97285202 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTAACAACAGAAATTGAAATTACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTAACAACAGAAATTGAAAATACCT
97285267 CAGCGTGTCCTG
65 CAGCGTGTCCTG
*
97285279 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTT-ACGAACAGAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAC-AACAGAAATTGAA
97285336 GAACAGAAAT
Statistics
Matches: 123, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
74 31 0.25
75 2 0.02
76 22 0.18
77 53 0.43
78 15 0.12
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAAATACCTC
AGCGTGTCCTG
Found at i:97285341 original size:14 final size:14
Alignment explanation
Indices: 97285322--97285349 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97285312 TTTTTTTTAC
97285322 GAACAGAAATTGAA
1 GAACAGAAATTGAA
97285336 GAACAGAAATTGAA
1 GAACAGAAATTGAA
97285350 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:97285467 original size:73 final size:74
Alignment explanation
Indices: 97285331--97285499 Score: 241
Period size: 73 Copynumber: 2.3 Consensus size: 74
97285321 CGAACAGAAA
* *
97285331 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCACAATAT
*
97285396 GAGTTAATTT
65 GAGTCAATTT
* ** * *
97285406 TTGACAAACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCACAATATG
*
97285470 AGTCGATTT
66 AGTCAATTT
97285479 TTGAAAAACAGAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
97285500 CCAGAAATTG
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
73 57 0.69
75 26 0.31
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCACAATATG
AGTCAATTT
Found at i:97285498 original size:14 final size:14
Alignment explanation
Indices: 97285479--97285513 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
97285469 GAGTCGATTT
97285479 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
97285493 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
97285507 TTGAAAA
1 TTGAAAA
97285514 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:97285558 original size:162 final size:159
Alignment explanation
Indices: 97285167--97285660 Score: 609
Period size: 162 Copynumber: 3.0 Consensus size: 159
97285157 TGATTTTTGA
*
97285167 AAAACAGAAATTTAAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAACAGAAA-TTGAAAATACCTCAGCGTGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGA
* *
97285229 GTTGATTTTTTTTTTA-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
64 GTT-A---ATTTTTGACA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
* *
97285293 TCTAGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTG
124 TCTCGCAATATGAGTTGA---TTTTTGA--AACAGAAATTG
* * *
97285334 AAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAG
1 AA-AACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
97285399 TTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
65 TTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
*
97285464 AATATGAGTCGATTTTTGAAAAACAGAAATTG
130 AATATGAGTTGATTTTTG--AAACAGAAATTG
* *
97285496 AAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
* * ** * * **
97285561 CTAATTTTTTATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
65 TTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
*
97285626 AATATGAGTTGATTTTTGACAAACAAAAATTG
130 AATATGAGTTGATTTTTG--AAACAGAAATTG
97285658 AAA
1 AAA
97285661 TTACCTCAGC
Statistics
Matches: 292, Mismatches: 27, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
161 2 0.01
162 161 0.55
164 1 0.00
165 67 0.23
166 1 0.00
167 19 0.07
168 9 0.03
169 30 0.10
170 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (159 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTGAAACAGAAATTG
Found at i:97285583 original size:89 final size:87
Alignment explanation
Indices: 97285406--97285569 Score: 233
Period size: 89 Copynumber: 1.9 Consensus size: 87
97285396 GAGTTAATTT
* *
97285406 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATG
*
97285470 AGTCGATTTTTGAAAAACAGAAA
65 AGTCAATTTTTGAAAAACAGAAA
* *
97285493 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGT--CCCAAGGCTCAACTCACCTCTCGCAATAT
97285558 GAG-CTAATTTTT
64 GAGTC-AATTTTT
97285570 TATGAACATA
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
86 3 0.04
87 29 0.43
88 1 0.01
89 35 0.51
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.26
Consensus pattern (87 bp):
TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
GTCAATTTTTGAAAAACAGAAA
Found at i:97285628 original size:73 final size:71
Alignment explanation
Indices: 97285533--97285732 Score: 256
Period size: 73 Copynumber: 2.8 Consensus size: 71
97285523 GTGTGAGCCA
* * *
97285533 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTTATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGC
97285598 GTGTCCTG
66 --GTCCTG
* ** * * **
97285606 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGC
*
97285671 GTCTTG
66 GTCCTG
* *
97285677 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATG-AACATAAATTAAAA
97285733 AAAAAATTGA
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
71 41 0.38
72 12 0.11
73 55 0.51
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATGAACATAAATTAAAACCACCTCAGC
GTCCTG
Found at i:97285659 original size:235 final size:230
Alignment explanation
Indices: 97285370--97285790 Score: 630
Period size: 235 Copynumber: 1.8 Consensus size: 230
97285360 CATGTGAGCC
*
97285370 GAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAG
1 GAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTGACAAACAAAAATTGAAATTACCTCAG
97285435 CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTTGAAAAACAGAAATTGAAA
66 C--GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAAAAACAGAAATT-AAA
* * *
97285499 ACCAGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGCT
128 A-AAAAAATTGAAAATACCTCAGCGTGT---CCTAAGGCTCAACTCACCTCTCGCAATATGAGCT
97285563 AATTTTTTATGAACATAAATTAAAACCACCTCAGCGTGTCCT
189 AATTTTTTATGAACATAAATTAAAACCACCTCAGCGTGTCCT
* *
97285605 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAG
1 GAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTGACAAACAAAAATTGAAATTACCTCAG
** * * *** *
97285670 CGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAA
66 CGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAAAAACAGAAATTAAAAAA
*
97285735 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
131 AAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAG
97285791 TTGAAATTAA
Statistics
Matches: 169, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
229 2 0.01
230 27 0.16
232 24 0.14
233 38 0.22
234 15 0.09
235 63 0.37
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (230 bp):
GAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTGACAAACAAAAATTGAAATTACCTCAG
CGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAAAAACAGAAATTAAAAAA
AAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTT
TATGAACATAAATTAAAACCACCTCAGCGTGTCCT
Found at i:97285706 original size:71 final size:72
Alignment explanation
Indices: 97285533--97285867 Score: 252
Period size: 73 Copynumber: 4.5 Consensus size: 72
97285523 GTGTGAGCCA
* * * * ** *
97285533 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTTATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTAAAACCACCTCAGC
97285598 GTGTCCTG
66 G-GTCCTG
* **
97285606 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTAAAACCACCTCAGC
*
97285671 -GTCTTG
66 GGTCCTG
* * *
97285677 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAAAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTG--AC-------AA-ACAAAAATTA
**
97285742 AAAATACCTCAGCGTGTCCTG
53 AAACCACCTCAGCG-GTCCTG
** *
97285763 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-A-AAACACAAAATTGAAAA-TA--TCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACA-AAAATT-AAAACCACCTCA
* *
97285822 GCGTGCCCCG
64 GCG-GTCCTG
* *
97285832 AGGCTCAACTCACCTCTTGCAATATGAGCTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
97285868 GAAAAAGTAG
Statistics
Matches: 218, Mismatches: 26, Indels: 39
0.77 0.09 0.14
Matches are distributed among these distances:
69 41 0.19
70 3 0.01
71 46 0.21
72 3 0.01
73 55 0.25
74 6 0.03
76 2 0.01
79 1 0.00
82 2 0.01
83 2 0.01
84 21 0.10
86 36 0.17
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (72 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTAAAACCACCTCAGC
GGTCCTG
Found at i:97285836 original size:69 final size:69
Alignment explanation
Indices: 97285724--97285859 Score: 211
Period size: 69 Copynumber: 2.0 Consensus size: 69
97285714 TTTGAAACAT
* *
97285724 AAATTAAAAAAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 AAATTAAAAAAAAAATTGAAAATA-CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
97285789 AGTTG
65 AGTTG
* *
97285794 AAATTAAAACACAAAATTGAAAATA-TCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATG
1 AAATTAAAA-AAAAAATTGAAAATACTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
97285858 AG
65 AG
97285860 CTGATTTTGA
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
69 38 0.62
70 9 0.15
71 14 0.23
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.23
Consensus pattern (69 bp):
AAATTAAAAAAAAAATTGAAAATACTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTG
Found at i:97286235 original size:72 final size:71
Alignment explanation
Indices: 97286009--97286657 Score: 493
Period size: 72 Copynumber: 8.6 Consensus size: 71
97285999 CAGTGTGTAA
* *
97286009 TCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATA
1 TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGAAAACAGAAATTGAAAATA
97286074 CCTCAGCATGTG
62 CCTCAGC--GTG
* * *
97286086 AACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAA
1 -TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTGAAAACAGAAATTGAAAA
*
97286151 TACCTCAACGTG
60 TACCTCAGCGTG
** * * *
97286163 TCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCT
1 TC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCT
97286228 CAGCGTG
65 CAGCGTG
* *
97286235 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAC
1 T-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGA-AAACAGAAATTGAA-A-
* ** * *
97286300 AGAAATTGAAAAGACCTCAG
59 A-TACCT---CAG-CGT--G
* * * **
97286320 -CATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTCAAACAGAAATTGA
1 TC-TGAG-GCTC-A-ACTC-----ACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGA
*
97286383 AATTACCTCAGCGTG
57 AAATACCTCAGCGTG
* * *
97286398 TCCCGAGGCTCAACTCACCTTTCGCAATATGAGTCGATTTTTTGAAAAACCAGAAATTGAAAATA
1 T-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AAAA-CAGAAATTGAAAATA
97286463 CCTCAGCGTG
62 CCTCAGCGTG
** * * * * * *
97286473 TGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATT-AAAACC
1 T---CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAAA-T
97286537 ACCTCAGCGTG
61 ACCTCAGCGTG
*
97286548 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACA-AAATTGAAATTACC
1 T-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAAATACC
*
97286612 TCAGC--A
64 TCAGCGTG
97286618 TCTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTT
1 TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
97286658 TTGAAACATA
Statistics
Matches: 469, Mismatches: 66, Indels: 82
0.76 0.11 0.13
Matches are distributed among these distances:
68 24 0.05
69 15 0.03
70 1 0.00
72 95 0.20
73 50 0.11
74 7 0.01
75 50 0.11
76 22 0.05
77 67 0.14
78 36 0.08
79 39 0.08
80 3 0.01
81 2 0.00
82 2 0.00
83 3 0.01
84 6 0.01
85 4 0.01
86 4 0.01
87 13 0.03
88 6 0.01
91 20 0.04
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (71 bp):
TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTC
AGCGTG
Found at i:97286276 original size:149 final size:144
Alignment explanation
Indices: 97286015--97286818 Score: 660
Period size: 149 Copynumber: 5.3 Consensus size: 144
97286005 GTAATCTGAA
* * *
97286015 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTT-A---ATTTTTGAAAACAGAAATTGAAATTACCTCAG
* *
97286080 CATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAA
62 C--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAAACAGAAA
*
97286144 TTGAAAATACCTCAACGTGTCTTGAG
120 TTGAAAATACCTCAACGTGTC-CGAG
** *
97286170 GCTCAACTCATTTCTCGCAATATAAGTTGAA-TTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
97286234 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGA
65 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTT-------G--A---AA-A
* * *
97286299 CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAG
114 CAGAAATTGAAAATACCTCA--ACGTG-TCCGAG
**
97286333 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTCAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
* * *
97286398 TCCCGAGGCTCAACTCACCTTTCGCAATATGAGTCGATTTTTTGAAAAACCAGAAATTGAAAATA
66 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAA-CAGAAATTGAAAATA
* *
97286463 CCTCAGCGTGTGAGCCAAG
129 CCTCAACGTGT---CCGAG
* * * * * **
97286482 GCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGT
*
97286547 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACA-AAATTGAAATTA
65 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAAATA
** *
97286610 CCTC-A-GCATCTGAG
129 CCTCAACGTGTCCGAG
* *
97286624 GCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAAACGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTG------------AAAACA-GAAATTGA
**
97286688 AATATA-CTCAGCGTGTCCTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA--AATT-AAACA
51 AAT-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA-A
* * *
97286748 CAAAAATTGAAAATACCTCAGCGTGCCCGAG
114 CAGAAATTGAAAATACCTCAACGTGTCCGAG
* * *
97286779 GCTCAACTCACCTCTTGCAATATGAGCTGATTTTTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAA
97286819 AGTAGAAATT
Statistics
Matches: 540, Mismatches: 64, Indels: 103
0.76 0.09 0.15
Matches are distributed among these distances:
141 15 0.03
142 18 0.03
143 6 0.01
145 2 0.00
147 18 0.03
148 15 0.03
149 102 0.19
150 57 0.11
151 31 0.06
152 6 0.01
153 18 0.03
154 28 0.05
155 78 0.14
156 16 0.03
157 1 0.00
160 8 0.01
161 20 0.04
162 2 0.00
163 98 0.18
164 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (144 bp):
GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACC
TCAACGTGTCCGAG
Found at i:97286303 original size:13 final size:13
Alignment explanation
Indices: 97286285--97286309 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97286275 TTTTTTACGA
97286285 ACAGAAATTGAAG
1 ACAGAAATTGAAG
97286298 ACAGAAATTGAA
1 ACAGAAATTGAA
97286310 AAGACCTCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.20, T:0.16
Consensus pattern (13 bp):
ACAGAAATTGAAG
Found at i:97286317 original size:89 final size:90
Alignment explanation
Indices: 97286203--97286368 Score: 255
Period size: 91 Copynumber: 1.8 Consensus size: 90
97286193 AAGTTGAATT
** *
97286203 TTGAAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATG
*
97286266 AGTTGATTTTTTTTTACGAACAGAAA
65 AGTTAATTTTTTTTTACGAACAGAAA
*
97286292 TTGAAGACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTCGCAATATG
97286357 AGTTAATTTTTT
65 AGTTAATTTTTT
97286369 CAAACAGAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
89 26 0.38
91 41 0.59
92 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (90 bp):
TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTTTTTTTTACGAACAGAAA
Found at i:97286439 original size:163 final size:151
Alignment explanation
Indices: 97286015--97287293 Score: 649
Period size: 149 Copynumber: 8.7 Consensus size: 151
97286005 GTAATCTGAA
* *
97286015 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTT-A--ATTTTTT--AAACAGAAATTGAAATTACCTCAG
* *
97286080 CATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTG--AAAACAGA
61 C--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTGAAAAAACAGA
* * * *
97286142 AATTGAAAATACCTCA--ACGTG-TCTTGAG
122 AATTGAAAAGACCTCAGCATGTGAGC-CGAG
** * **
97286170 GCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTTAAACAGAAATTGAAATTACCTCAGCGTG
97286235 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAC
65 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT-------GAAA---AA-AC
97286300 AGAAATTGAAAAGACCTCAGCATGTGAGCCGAG
119 AGAAATTGAAAAGACCTCAGCATGTGAGCCGAG
97286333 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTCAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTT-AAACAGAAATTGAAATTACCTCAGCGTG
* * * *
97286398 TCCCGAGGCTCAACTCACCTTTCGCAATATGAGTCGA---TTTTTTGAAAAACCAGAAATTGAAA
65 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAAACAGAAATTGAAA
* * *
97286460 ATACCTCAGCGTGTGAGCCAAG
130 AGACCTCAGCATGTGAGCCGAG
* * * * * **
97286482 GCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTT--TAAACAGAAATTGAAATTACCTCAGCGT
*
97286547 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTG-ACAAACA-AAATTGAA
64 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAAACAGAAATTGAA
** *
97286606 ATTACCTCAGCA--T---CTGAG
129 AAGACCTCAGCATGTGAGCCGAG
*
97286624 GCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAAACGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTT-AAAC-------------A-GAAATTGA
**
97286688 AATATA-CTCAGCGTGTCCTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA-----AATT--A
50 AAT-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAA
* * * *
97286744 AACACAAAAATTGAAAATACCTCAGC--GTG-CCCGAG
114 AAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAG
* * * * * *
97286779 GCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTTGAA-A-AAGTAGAAATTA----A------
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTAAACAGAAATTGAAATTACCTCAGCGTGT
* * * * * *
97286831 ---AAGGTTCAACCCACCTCTCGCAATATGAGTTGA----TTCTTG-ACAAACAGAAATTGAAAT
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAAACAGAAATTGAAAA
* * *
97286888 TACCTCATC--GTG-TCCTGA-
131 GACCTCAGCATGTGAGCC-GAG
* * *
97286906 GCTCAACTCACCTCTCGCAATAT--G--AA----TT-----GAAA---AAAATACCACAGTGTGT
1 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTAAACAGAAATTGAAATTACCTCAGCGTG-
* *
97286955 AATCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTT--AAAAACAG-AATTGA
65 --TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAAACAGAAATTGA
* *
97287016 AAATACCTCAGCATGTGAACGCGAG
128 AAAGACCTCAGCATGTGAGC-CGAG
* * *
97287041 GCTCAACTCA-CTCTCG-AATATAAGTTGATTTTTTTTTTTTTGAAACAGAAATTGAAAATACCC
1 GCTCAACTCACCTCTCGCAATATGAGTT-A------ATTTTTT-AAACAGAAATTGAAATTA-CC
* * * ** * *
97287104 TCAACATGTCTTGAGGCTCAACTCATTTCTCGC-ATATAAGTTGA----ATTTTG--AAAACAGA
57 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAAACAGA
** *
97287162 AATTGAAATTACCTCAGC--GTG-TCCTGAG
122 AATTGAAAAGACCTCAGCATGTGAGCC-GAG
* * * *
97287190 GCTCAACTCA-TTTTCGCAATAT-AGTTGATTTTTTTTTAACAAGAAATTGAAATTA-CTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTTAAAC-AGAAATTGAAATTACCTCAGCG
* *
97287252 TGTCCTGAGGCTC-ATTCACCTCTAGCAATATGAGTTGATTTT
63 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
97287294 GAAAACAAAA
Statistics
Matches: 908, Mismatches: 110, Indels: 221
0.73 0.09 0.18
Matches are distributed among these distances:
114 5 0.01
117 2 0.00
118 1 0.00
120 2 0.00
123 1 0.00
124 10 0.01
125 20 0.02
126 2 0.00
127 49 0.05
128 2 0.00
130 29 0.03
131 16 0.02
132 7 0.01
133 13 0.01
134 9 0.01
135 12 0.01
136 2 0.00
137 8 0.01
138 1 0.00
139 1 0.00
140 1 0.00
141 27 0.03
142 46 0.05
143 3 0.00
144 21 0.02
145 1 0.00
147 18 0.02
148 19 0.02
149 129 0.14
150 67 0.07
151 36 0.04
152 22 0.02
153 31 0.03
154 39 0.04
155 98 0.11
156 16 0.02
157 7 0.01
158 6 0.01
160 8 0.01
161 20 0.02
162 6 0.01
163 94 0.10
164 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (151 bp):
GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTAAACAGAAATTGAAATTACCTCAGCGTGT
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAAACAGAAATTGAAAA
GACCTCAGCATGTGAGCCGAG
Found at i:97286486 original size:240 final size:220
Alignment explanation
Indices: 97286298--97287293 Score: 501
Period size: 222 Copynumber: 4.6 Consensus size: 220
97286288 GAAATTGAAG
* *
97286298 ACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
1 ACAGAAATTGAAAACACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
*
97286363 TTTTTTCAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATAT
66 TTTTTTCAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA-CTTTCGCAATAT
*
97286428 GAGTCGATTTTTTGAAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCA
130 GAGTTGATTTTTTGAAAAA-CAGAAATTGAAAATACCTCAGCGTGT---CCTAAGGCTCAACTCA
*
97286492 CCTCTTGCAATATGAGCTAATTTTTGATGA
191 CCTCTCGCAATATGAGCTAATTTTTGATGA
* *
97286522 ACATAAATT-AAAACCACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 ACAGAAATTGAAAA-CACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
97286583 GATTTTTGACAAACA-AAATTGAAATTACCTCAGC--AT-CTGAGGCTCAACTCACTCTCGCAAT
64 AATTTTT-TCAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTTCGCAAT
* *
97286644 ATGAGTTGATTTTTTTGAAACATAAATTAAAAAAACGAAATTGAAATATA-CTCAGCGTGTCCTG
128 ATGAGTTGA-TTTTTTG-----------AAAAACA-GAAATTGAAA-ATACCTCAGCGTGTCCTA
* * *
97286708 AGGCTCAACTCA-CTCTCGCAATATGAGTTGAA--ATT-A-AA
179 AGGCTCAACTCACCTCTCGCAATATGAGCT-AATTTTTGATGA
* * * * * *
97286746 CACAAAAATTGAAAATACCTCAGC--GTG-CCCGAGGCTCAACTCACCTCTTGCAATATGAGCTG
1 -ACAGAAATTGAAAACACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
* * * ** * * *
97286808 A-TTTTT-GAA-A-AAGTAGAAATTA--AAAG-GT-T-C--A-AC-C--CAC-CTCTCGCAATAT
65 ATTTTTTCAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTTCGCAATAT
* * * * *
97286857 GAGTTGA-TTCTTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGA-GCTCAACTCACCTC
130 GAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTC
97286920 TCGCAATAT--G--AA---TTGA--A
195 TCGCAATATGAGCTAATTTTTGATGA
* * *
97286937 A-A-AAA-T------ACCACAG--TGTGTAATCTTGAAGCTCAACTCACCTCTCGCAATATGAGT
1 ACAGAAATTGAAAACACCTCAGCATGTG-AA-C-CGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * *
97286991 TGATTTTTTTTAAAAACAG-AATTGAAAATACCTCAGCATGTGAACGC-GAGGCTCAACTCACTC
63 T-A-ATTTTTT-CAAACAGAAATTGAAATTACCTCAGC--GTG-TC-CTGAGGCTCAACTCACTT
* *** * * * *
97287054 TCG-AATATAAGTTGATTTTTTTTTTTTTGAAACAGAAATTGAAAATACCCTCAACATGTCTTGA
121 TCGCAATATGAGTTGA-----TTTTTTGAAAAACAGAAATTGAAAATA-CCTCAGCGTGTCCTAA
** * * *
97287118 GGCTCAACTCATTTCTCGC-ATATAAGTTGAA-TTTTGA-AA
180 GGCTCAACTCACCTCTCGCAATATGAGCT-AATTTTTGATGA
** * * *
97287157 ACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCA-TTTTCGCAATAT-AGTTG
1 ACAGAAATTGAAAACACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATGAGTT-
* ** * * *
97287217 ATTTTTTTTTAACAAGAAATTGAAATTA-CTCAGCGTGTCCTGAGGCTC-ATTCACCTCTAGCAA
64 AATTTTTTCAAAC-AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA-CTTTCGCAA
97287280 TATGAGTTGATTTT
127 TATGAGTTGATTTT
97287294 GAAAACAAAA
Statistics
Matches: 613, Mismatches: 74, Indels: 178
0.71 0.09 0.21
Matches are distributed among these distances:
181 9 0.01
184 1 0.00
185 28 0.05
187 1 0.00
188 8 0.01
189 1 0.00
190 3 0.00
191 12 0.02
192 3 0.00
193 2 0.00
195 1 0.00
196 14 0.02
197 36 0.06
198 5 0.01
200 1 0.00
201 1 0.00
202 1 0.00
203 1 0.00
205 13 0.02
206 6 0.01
209 5 0.01
211 40 0.07
212 19 0.03
213 16 0.03
214 2 0.00
215 1 0.00
216 5 0.01
217 2 0.00
218 21 0.03
219 30 0.05
220 27 0.04
221 19 0.03
222 65 0.11
223 30 0.05
224 64 0.10
225 32 0.05
226 19 0.03
227 17 0.03
228 14 0.02
229 10 0.02
230 25 0.04
231 3 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (220 bp):
ACAGAAATTGAAAACACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
TTTTTTCAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTTCGCAATATG
AGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCT
CGCAATATGAGCTAATTTTTGATGA
Found at i:97287100 original size:80 final size:77
Alignment explanation
Indices: 97286964--97287152 Score: 199
Period size: 79 Copynumber: 2.4 Consensus size: 77
97286954 TAATCTTGAA
*
97286964 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTTAAAAACAGAATTGAAAATA-CCTC
1 GCTCAACTCACCTCTCG-AATATAAGTTGATTTTTTTTTTTAAAAACAGAATTGAAAATACCCTC
*
97287025 AGCATGTGAACGCGAG
65 AACATGT---CGCGAG
**
97287041 GCTCAACTCA-CTCTCGAATATAAGTTGATTTTTTTTTTTTTGAAACAGAAATTGAAAATACCCT
1 GCTCAACTCACCTCTCGAATATAAGTTGA-TTTTTTTTTTTAAAAACAG-AATTGAAAATACCCT
**
97287105 CAACATGTCTTGAG
64 CAACATGTCGCGAG
** * *
97287119 GCTCAACTCATTTCTCGCATATAAGTTGAATTTT
1 GCTCAACTCACCTCTCGAATATAAGTTGATTTTT
97287153 GAAAACAGAA
Statistics
Matches: 96, Mismatches: 9, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
75 11 0.11
76 6 0.06
77 10 0.10
78 18 0.19
79 30 0.31
80 11 0.11
81 10 0.10
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (77 bp):
GCTCAACTCACCTCTCGAATATAAGTTGATTTTTTTTTTTAAAAACAGAATTGAAAATACCCTCA
ACATGTCGCGAG
Found at i:97287135 original size:79 final size:75
Alignment explanation
Indices: 97286957--97287293 Score: 297
Period size: 71 Copynumber: 4.5 Consensus size: 75
97286947 CAGTGTGTAA
* * * **
97286957 TCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAG-AATTGAAAATA
1 TCTTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTTTGAAACAGAAATTGAAAATA
97287021 CCTCAGCATG
66 CCTCAGCATG
**
97287031 TGAACGCGAGGCTCAACTCA-CTCTCG-AATATAAGTTGATTTTTTTTTTTTTGAAACAGAAATT
1 T---CTTGAGGCTCAACTCATCTCTCGCAATATAAGTTGA----TTTTTTTTTGAAACAGAAATT
*
97287094 GAAAATACCCTCAACATG
59 GAAAATA-CCTCAGCATG
* * *
97287112 TCTTGAGGCTCAACTCATTTCTCGC-ATATAAGTTGA----ATTTTGAAAACAGAAATTGAAATT
1 TCTTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTTTG-AAACAGAAATTGAAAAT
*
97287172 ACCTCAGCGTG
65 ACCTCAGCATG
* * *
97287183 TCCTGAGGCTCAACTCAT-TTTCGCAATAT-AGTTGATTTTTTTTT--AACAAGAAATTGAAATT
1 TCTTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTTTGAAAC-AGAAATTGAAAAT
*
97287244 A-CTCAGCGTG
65 ACCTCAGCATG
* * * * *
97287254 TCCTGAGGCTC-ATTCACCTCTAGCAATATGAGTTGATTTT
1 TCTTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTT
97287294 GAAAACAAAA
Statistics
Matches: 222, Mismatches: 21, Indels: 42
0.78 0.07 0.15
Matches are distributed among these distances:
70 15 0.07
71 66 0.30
72 41 0.18
74 5 0.02
75 11 0.05
76 6 0.03
77 13 0.06
78 14 0.06
79 30 0.14
80 11 0.05
81 10 0.05
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (75 bp):
TCTTGAGGCTCAACTCATCTCTCGCAATATAAGTTGATTTTTTTTTGAAACAGAAATTGAAAATA
CCTCAGCATG
Found at i:97287209 original size:947 final size:952
Alignment explanation
Indices: 97285101--97287227 Score: 3554
Period size: 947 Copynumber: 2.2 Consensus size: 952
97285091 AAAGTAGATT
* * * *
97285101 TTGAAAATACATC-GACATGTGAACCCAAGGCTCAACTCACATCTCGCAATATGAGTTGA-----
1 TTGAAAATACCTCAG-CATGTGAA-CCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
* * * **
97285160 TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
64 TTTTTG-AAAACAGAAA-TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
* * *
97285225 ATGAGTTGATTTTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
127 ATAAGTTGA----ATTTTGAA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
*
97285290 ACCTCTAGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGAC
187 ACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGAC
97285355 CTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTGACAAACAGAAA
252 CTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTGACAAACAGAAA
97285420 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAA
317 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTT----
97285485 AACAGAAATTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCT
378 -A-AG-AA-T-AAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCT
*
97285550 TGCAATATGAGCTAATTTTTTATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAAC
438 TGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAAC
*
97285615 TCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGG
503 TCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCATCTTGAGG
97285680 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAAAAATTGAAA
568 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAAAAATTGAAA
97285745 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAA
633 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAA
97285810 TTGAAAATATCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGAAAAAG
698 TTGAAAATATCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGAAAAAG
97285875 TAGAAATTAAAAGGTTCAACCACCTCTCCAATATGAGTTGATTCTTGACAAACAGAAATTGAAAT
763 TAGAAATTAAAAGGTTCAACCACCTCTCCAATATGAGTTGATTCTTGACAAACAGAAATTGAAAT
97285940 TACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGAAAAAATACCACAGTGT
828 TACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGAAAAAATACCACAGTGT
97286005 GTAATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAA
893 GTAATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAA
97286065 TTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTT
1 TTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTT
97286130 TTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAA
66 TTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAA
97286195 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
131 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
97286260 AATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG-ACAGAAATTGAAAAGACCTCAGCATG
196 AATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATG
* *
97286324 TGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT-TCAAACAGAAATTGAAATTA
261 TGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTA
* *
97286388 CCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTCGATTTTT-TG-A-AAAACCA
326 CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTAAGAATAAAACCA
97286450 GAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGCTAATTT
391 GAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGCTAATTT
97286515 TTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
456 TTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
97286580 GTTGATTTTTGACAAAC-AAAATTGAAATTACCTCAGCATC-TGAGGCTCAACTCAC-TCTCGCA
521 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCATCTTGAGGCTCAACTCACTTCTCGCA
97286642 ATATGAGTTGA-TTTTTTTGAAACATAAATTAAAAAAACGAAATTGAAATATA-CTCAGCGTGTC
586 ATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAA--AAATTGAAA-ATACCTCAGCGTGTC
97286705 CTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGAAATT-AAACACAAAAATTGAAAATACCTCA
648 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACAC-AAAATTGAAAATA--TCA
97286768 GCGTG-CCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTTGAAAAAGTAGAAATTAAA
710 GCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAAAAAGTAGAAATTAAA
97286832 AGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATC
774 AGGTTCAA-CCACCTCTC-CAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATC
97286897 GTGTCCTGA-GCTCAACTCACCTCTCGCAATATGAATTGAAAAAAATACCACAGTGTGTAATCTT
837 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTG-AAAAAATACCACAGTGTGTAATC-T
97286961 GAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTAAAAACAG-AA
900 GAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAA
97287012 TTGAAAATACCTCAGCATGTGAACGCGAGGCTCAACTCA-CTCTCG-AATATAAGTTGATTTTTT
1 TTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATAAGTTGA---TTT
*
97287075 TTTTTTTG-AAACAGAAATTGAAAATACCCTCAACATGTCTTGAGGCTCAACTCATTTCTCGC-A
62 TTTTTTTGAAAACAGAAATTGAAAATA-CCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
*
97287138 TATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA-TT
126 TATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
*
97287202 TTCGCAATAT-AGTTGATTTTTTTTTA
191 CTCGCAATATGAGTTGATTTTTTTTTA
97287228 ACAAGAAATT
Statistics
Matches: 1119, Mismatches: 22, Indels: 62
0.93 0.02 0.05
Matches are distributed among these distances:
943 32 0.03
944 54 0.05
945 86 0.08
946 91 0.08
947 233 0.21
948 189 0.17
949 79 0.07
950 1 0.00
952 1 0.00
959 70 0.06
960 69 0.06
961 89 0.08
962 6 0.01
963 32 0.03
964 20 0.02
965 1 0.00
966 50 0.04
967 10 0.01
968 6 0.01
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (952 bp):
TTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTT
TTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAA
GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATG
TGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTA
CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTAAGAATAAAACCA
GAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGCTAATTT
TTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCATCTTGAGGCTCAACTCACTTCTCGCA
ATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAAAAATTGAAAATACCTCAGCGTGTCCTG
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAATTGAAAATATCAGCGTGC
CCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCA
ACCACCTCTCCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGA
GGCTCAACTCACCTCTCGCAATATGAATTGAAAAAATACCACAGTGTGTAATCTGAAGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAA
Found at i:97287472 original size:67 final size:66
Alignment explanation
Indices: 97287309--97287475 Score: 173
Period size: 65 Copynumber: 2.5 Consensus size: 66
97287299 CAAAATTAAA
* * * **
97287309 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAATACTCGGCGTGCC
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTAAAACATAAACTAAAATACTCAACGTGCC
97287373 CG
65 CG
* *
97287375 AGGCTC-ACTCACTTCTCGC-ATATGAGTTGATTTTGAAA-A-AAATTAAAATACCTCAACGTGT
1 AGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTAAAACATAAACTAAAATA-CTCAACGTG-
**
97287436 CTTG
63 CCCG
97287440 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTT
97287476 CCTTTGAAAG
Statistics
Matches: 85, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
63 10 0.12
64 16 0.19
65 27 0.32
66 16 0.19
67 16 0.19
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (66 bp):
AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTAAAACATAAACTAAAATACTCAACGTGCCC
G
Found at i:97295748 original size:15 final size:16
Alignment explanation
Indices: 97295723--97295753 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
97295713 AGTATGGGAT
97295723 ATGCAATGAATGAATG
1 ATGCAATGAATGAATG
97295739 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
97295754 CATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (16 bp):
ATGCAATGAATGAATG
Found at i:97297342 original size:16 final size:15
Alignment explanation
Indices: 97297321--97297368 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
97297311 TGATGGAATA
97297321 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
97297337 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
97297352 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
97297368 A
1 A
97297369 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:97297351 original size:8 final size:8
Alignment explanation
Indices: 97297317--97297368 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
97297307 ACAATGATGG
*
97297317 AATAATAA
1 AATATTAA
97297325 AATATATAA
1 AATAT-TAA
97297334 AATA-TAA
1 AATATTAA
97297341 AATATTAA
1 AATATTAA
*
97297349 AATATCAA
1 AATATTAA
*
97297357 AATATTAG
1 AATATTAA
97297365 AATA
1 AATA
97297369 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:97297368 original size:24 final size:24
Alignment explanation
Indices: 97297316--97297372 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
97297306 AACAATGATG
*
97297316 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
97297340 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
97297364 GAATAATAA
1 GAATAATAA
97297373 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:97297533 original size:23 final size:22
Alignment explanation
Indices: 97297482--97297535 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
97297472 ATACTACATC
97297482 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
97297501 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
97297524 AATATGTACATA
1 AATATGTACATA
97297536 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:97297582 original size:22 final size:24
Alignment explanation
Indices: 97297498--97297583 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
97297488 TACATATATA
* *
97297498 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
97297521 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
97297546 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
97297569 -AAGATATATACATAA
1 AAAAATATATACATAA
97297584 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:97297632 original size:22 final size:22
Alignment explanation
Indices: 97297606--97297735 Score: 67
Period size: 22 Copynumber: 5.7 Consensus size: 22
97297596 AAAAATATAT
97297606 ATATATATATATAATATTAAAG
1 ATATATATATATAATATTAAAG
* * *
97297628 ATATATAAATAAAATAGTATAA-
1 ATATATATATATAATATTA-AAG
97297650 ATATATATATACGTAATA-TAAA-
1 ATATATATATA--TAATATTAAAG
* *
97297672 ATTTAAAATATACCTAATATATTAAAAG
1 ATAT-ATATATA--T-A-ATATT-AAAG
97297700 AATATATATAATATAATATT-AAG
1 -ATATATAT-ATATAATATTAAAG
97297723 A-A-ATATA-ATAATA
1 ATATATATATATAATA
97297736 ACAAAAAAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 26
0.71 0.08 0.21
Matches are distributed among these distances:
18 6 0.07
19 1 0.01
20 4 0.05
21 1 0.01
22 32 0.37
23 15 0.17
24 5 0.06
25 8 0.09
26 2 0.02
27 4 0.05
28 3 0.03
29 6 0.07
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (22 bp):
ATATATATATATAATATTAAAG
Found at i:97297640 original size:14 final size:13
Alignment explanation
Indices: 97297597--97297652 Score: 51
Period size: 14 Copynumber: 4.1 Consensus size: 13
97297587 AACATGTAGA
*
97297597 AAAATATATATAT
1 AAAATATATAAAT
*
97297610 -ATATATATAATATT
1 AAAATATATAA-A-T
97297624 AAAGATATATAAAT
1 AAA-ATATATAAAT
97297638 AAAATAGTATAAAT
1 AAAATA-TATAAAT
97297652 A
1 A
97297653 TATATATACG
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
12 8 0.23
13 4 0.11
14 13 0.37
15 2 0.06
16 8 0.23
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (13 bp):
AAAATATATAAAT
Found at i:97297733 original size:23 final size:25
Alignment explanation
Indices: 97297604--97297735 Score: 77
Period size: 24 Copynumber: 5.5 Consensus size: 25
97297594 AGAAAAATAT
97297604 ATATATATATATATAATATT-AAAG-
1 ATATATATA-ATATAATATTAAAAGA
* * *
97297628 ATATATA-AATAAAATAGTATAAATA
1 ATATATATAATATAATATTA-AAAGA
* *
97297653 TATATATACGTAATATAAAATT-TAA-A
1 -ATATATA--TAATATAATATTAAAAGA
**
97297679 ATATACCT-A-AT-ATATTAAAAGA
1 ATATATATAATATAATATTAAAAGA
*
97297701 ATATATATAATATAATATTAAGA-A
1 ATATATATAATATAATATTAAAAGA
97297725 ATATA-ATAATA
1 ATATATATAATA
97297736 ACAAAAAAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 25
0.68 0.12 0.21
Matches are distributed among these distances:
20 4 0.05
21 4 0.05
22 16 0.20
23 9 0.11
24 18 0.22
25 13 0.16
26 8 0.10
27 2 0.02
29 8 0.10
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (25 bp):
ATATATATAATATAATATTAAAAGA
Found at i:97298257 original size:30 final size:30
Alignment explanation
Indices: 97298221--97298305 Score: 152
Period size: 30 Copynumber: 2.8 Consensus size: 30
97298211 TAGGTGCAAG
*
97298221 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
97298251 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
97298281 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
97298306 TGAGAAAAGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.20, C:0.04, G:0.51, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:97304293 original size:106 final size:100
Alignment explanation
Indices: 97303984--97304378 Score: 491
Period size: 106 Copynumber: 3.9 Consensus size: 100
97303974 ATTGGAATAC
* * * *
97303984 AAAATACAAGTTTAAAAAAAAAATT-GGTGTTGGCTTGTTAATGGCCGGCACCAAGTACAAAAAA
1 AAAATACGAGTTTAAAAAAAAAATTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAA
*
97304048 AAA-TCAA--TTTTT-AAAAAAA-TTTGCTCTCCG
66 AAATTCAATTTTTTTAAAAAAAATTTTGCTCTCCA
* *
97304078 AAAATACGAGTTTAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGACTGGCACCAAGTAC-AAAA
1 AAAATACGAGTTTAAAAAAAAAA-TTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAA
*
97304142 AAAATT-AATTTTTTTAAAAAAAATTTCGCTCTCCA
65 AAAATTCAATTTTTTTAAAAAAAATTTTGCTCTCCA
* * *
97304177 AAAATACGAGTTTTAAAAAAAAAATTGGGTGCTGGCTTGTCAATGGCCGACACCCAGTACCAAAA
1 AAAATACGAG-TTTAAAAAAAAAATTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTA-CAAAA
97304242 AAAAATTCAAAATTTTTTTTAAAAAAAAATTTTGCTCTCCA
64 AAAAATTC--AA-TTTTTTT-AAAAAAAATTTTGCTCTCCA
** * *
97304283 AAAATACGAGTTTTAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGGCACCATGTACAAAAA
1 AAAATACGAG-TTTAAAAAAAAAATTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTAC-AAAA
*
97304348 AAAAATTCAAGTTTTTTTTAAAAAAAGTTTT
64 AAAAATTCAA--TTTTTTTAAAAAAAATTTT
97304379 TTTTGCAGTT
Statistics
Matches: 262, Mismatches: 22, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
94 22 0.08
95 12 0.05
96 29 0.11
97 5 0.02
98 7 0.03
99 49 0.19
100 14 0.05
101 10 0.04
104 15 0.06
105 16 0.06
106 83 0.32
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.29
Consensus pattern (100 bp):
AAAATACGAGTTTAAAAAAAAAATTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAA
AAATTCAATTTTTTTAAAAAAAATTTTGCTCTCCA
Found at i:97322569 original size:72 final size:72
Alignment explanation
Indices: 97322452--97322635 Score: 359
Period size: 72 Copynumber: 2.6 Consensus size: 72
97322442 ACAACTTGAC
*
97322452 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
97322517 ACTAACA
66 ACTAACA
97322524 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
97322589 ACTAACA
66 ACTAACA
97322596 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
97322636 AATAATAATA
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 111 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.28
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:97322644 original size:3 final size:3
Alignment explanation
Indices: 97322636--97322673 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
97322626 ATTACATCCA
97322636 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
97322674 AACATGTGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:97327009 original size:72 final size:72
Alignment explanation
Indices: 97326892--97327147 Score: 503
Period size: 72 Copynumber: 3.6 Consensus size: 72
97326882 ACAACTTGAC
*
97326892 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
97326957 ACTAACA
66 ACTAACA
97326964 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
97327029 ACTAACA
66 ACTAACA
97327036 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
97327101 ACTAACA
66 ACTAACA
97327108 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
97327148 AATAATAATA
Statistics
Matches: 183, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 183 1.00
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.27
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:97327156 original size:3 final size:3
Alignment explanation
Indices: 97327148--97327185 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
97327138 ATTACATCCA
97327148 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
97327186 AACATGTGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:97329823 original size:18 final size:18
Alignment explanation
Indices: 97329800--97329835 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
97329790 AACTTTCCTA
*
97329800 AATAAAGCAGTAGAATCC
1 AATAAAGCAGCAGAATCC
97329818 AATAAAGCAGCAGAATCC
1 AATAAAGCAGCAGAATCC
97329836 CATTATGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.19, G:0.17, T:0.14
Consensus pattern (18 bp):
AATAAAGCAGCAGAATCC
Found at i:97334165 original size:20 final size:20
Alignment explanation
Indices: 97334142--97334184 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
97334132 TAAAATATAT
*
97334142 TATAAATAATATAGT-ATAGA
1 TATAAAT-ATATAATGATAGA
*
97334162 TATAGATATATAATGATAGA
1 TATAAATATATAATGATAGA
97334182 TAT
1 TAT
97334185 TGATAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (20 bp):
TATAAATATATAATGATAGA
Found at i:97343309 original size:38 final size:37
Alignment explanation
Indices: 97343261--97343421 Score: 196
Period size: 38 Copynumber: 4.2 Consensus size: 37
97343251 GACCAATCGA
* *
97343261 AACATGCCAGTTTGCTCATAAGAGCTATTACACCCAAT
1 AACACGCCAGTTTGCTCATAAGAGCTATT-CACCCGAT
* *
97343299 AACACACCAGTTTGCTCATAAGAGCTATCTCATCCGAT
1 AACACGCCAGTTTGCTCATAAGAGCTAT-TCACCCGAT
* * *
97343337 AACACGCCAATTTGCTTATAAGAGCTATTCCACCTGAT
1 AACACGCCAGTTTGCTCATAAGAGCTATT-CACCCGAT
* * *
97343375 AACACGCCAGTTTTCTCATAAGAGTTATTCTATCCGAT
1 AACACGCCAGTTTGCTCATAAGAGCTATTC-ACCCGAT
97343413 AACACGCCA
1 AACACGCCA
97343422 ATATATTTGT
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
37 2 0.02
38 102 0.97
39 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (37 bp):
AACACGCCAGTTTGCTCATAAGAGCTATTCACCCGAT
Found at i:97343397 original size:76 final size:76
Alignment explanation
Indices: 97343261--97343423 Score: 229
Period size: 76 Copynumber: 2.1 Consensus size: 76
97343251 GACCAATCGA
* *
97343261 AACATGCCAGTTTGCTCATAAGAGCTATTACACCCAATAACACACCAGTTTGCTCATAAGAGCTA
1 AACACGCCAATTTGCTCATAAGAGCTATTACACCCAATAACACACCAGTTTGCTCATAAGAGCTA
97343326 -TCTCATCCGAT
66 TTCT-ATCCGAT
* * ** * * *
97343337 AACACGCCAATTTGCTTATAAGAGCTATTCCACCTGATAACACGCCAGTTTTCTCATAAGAGTTA
1 AACACGCCAATTTGCTCATAAGAGCTATTACACCCAATAACACACCAGTTTGCTCATAAGAGCTA
97343402 TTCTATCCGAT
66 TTCTATCCGAT
97343413 AACACGCCAAT
1 AACACGCCAAT
97343424 ATATTTGTAG
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
76 74 0.96
77 3 0.04
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (76 bp):
AACACGCCAATTTGCTCATAAGAGCTATTACACCCAATAACACACCAGTTTGCTCATAAGAGCTA
TTCTATCCGAT
Found at i:97344800 original size:23 final size:21
Alignment explanation
Indices: 97344777--97344821 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
97344767 GATTTACATG
97344777 ATGA-ATGTAGAATCATAGAT
1 ATGATATGTAGAATCATAGAT
* *
97344797 ATGATATGTAGAATTATATAT
1 ATGATATGTAGAATCATAGAT
97344818 ATGA
1 ATGA
97344822 CATAAATGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (21 bp):
ATGATATGTAGAATCATAGAT
Found at i:97346192 original size:276 final size:276
Alignment explanation
Indices: 97345699--97346250 Score: 1104
Period size: 276 Copynumber: 2.0 Consensus size: 276
97345689 TAGAAGCTAA
97345699 GGGCTATGTAAATAATAGTCGTAGTCATGCTTTCAGGTTTTGGGTGCTGGGTTTCAACATGGAAA
1 GGGCTATGTAAATAATAGTCGTAGTCATGCTTTCAGGTTTTGGGTGCTGGGTTTCAACATGGAAA
97345764 GGATTGGAAATAAACCTGATTTGCATTGTATTTGGTTGGTTTGAATGGAAGATGAACAAGGTTTC
66 GGATTGGAAATAAACCTGATTTGCATTGTATTTGGTTGGTTTGAATGGAAGATGAACAAGGTTTC
97345829 TTTAATTTGTTGAGAAATTTTGATAGGAAGATGAGTAATCGTTCTTCATCTTTTTTTTACGAAAA
131 TTTAATTTGTTGAGAAATTTTGATAGGAAGATGAGTAATCGTTCTTCATCTTTTTTTTACGAAAA
97345894 TTTGAGTTATTTCTGTAAGTCACTCCTCAGACTAAAATTATAGGTCCCCAACAGAGCTCTTTAGG
196 TTTGAGTTATTTCTGTAAGTCACTCCTCAGACTAAAATTATAGGTCCCCAACAGAGCTCTTTAGG
97345959 TTCAAGGTTGCACGAG
261 TTCAAGGTTGCACGAG
97345975 GGGCTATGTAAATAATAGTCGTAGTCATGCTTTCAGGTTTTGGGTGCTGGGTTTCAACATGGAAA
1 GGGCTATGTAAATAATAGTCGTAGTCATGCTTTCAGGTTTTGGGTGCTGGGTTTCAACATGGAAA
97346040 GGATTGGAAATAAACCTGATTTGCATTGTATTTGGTTGGTTTGAATGGAAGATGAACAAGGTTTC
66 GGATTGGAAATAAACCTGATTTGCATTGTATTTGGTTGGTTTGAATGGAAGATGAACAAGGTTTC
97346105 TTTAATTTGTTGAGAAATTTTGATAGGAAGATGAGTAATCGTTCTTCATCTTTTTTTTACGAAAA
131 TTTAATTTGTTGAGAAATTTTGATAGGAAGATGAGTAATCGTTCTTCATCTTTTTTTTACGAAAA
97346170 TTTGAGTTATTTCTGTAAGTCACTCCTCAGACTAAAATTATAGGTCCCCAACAGAGCTCTTTAGG
196 TTTGAGTTATTTCTGTAAGTCACTCCTCAGACTAAAATTATAGGTCCCCAACAGAGCTCTTTAGG
97346235 TTCAAGGTTGCACGAG
261 TTCAAGGTTGCACGAG
97346251 CCTATTTCCA
Statistics
Matches: 276, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
276 276 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (276 bp):
GGGCTATGTAAATAATAGTCGTAGTCATGCTTTCAGGTTTTGGGTGCTGGGTTTCAACATGGAAA
GGATTGGAAATAAACCTGATTTGCATTGTATTTGGTTGGTTTGAATGGAAGATGAACAAGGTTTC
TTTAATTTGTTGAGAAATTTTGATAGGAAGATGAGTAATCGTTCTTCATCTTTTTTTTACGAAAA
TTTGAGTTATTTCTGTAAGTCACTCCTCAGACTAAAATTATAGGTCCCCAACAGAGCTCTTTAGG
TTCAAGGTTGCACGAG
Found at i:97347460 original size:6 final size:6
Alignment explanation
Indices: 97347451--97347544 Score: 59
Period size: 6 Copynumber: 15.7 Consensus size: 6
97347441 TTTCTCTTTC
* * * * * *
97347451 TCTTCT TCTTCT CCTTCA CCTTCC TCTTCT TCCTCT AT-TTCT TCTGCT
1 TCTTCT TCTTCT TCTTCT TCTTCT TCTTCT TCTTCT -TCTTCT TCTTCT
* * *
97347499 TCTTCT TCATCT GCTTCT TCTTCT GCTT-T GTC-TCT CTCTTCT TCTT
1 TCTTCT TCTTCT TCTTCT TCTTCT TCTTCT -TCTTCT -TCTTCT TCTT
97347545 TCTCCATGCC
Statistics
Matches: 67, Mismatches: 16, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
5 3 0.04
6 60 0.90
7 4 0.06
ACGTcount: A:0.03, C:0.36, G:0.04, T:0.56
Consensus pattern (6 bp):
TCTTCT
Found at i:97347511 original size:15 final size:15
Alignment explanation
Indices: 97347493--97347521 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
97347483 CTCTATTTCT
97347493 TCTGCTTCTTCTTCA
1 TCTGCTTCTTCTTCA
97347508 TCTGCTTCTTCTTC
1 TCTGCTTCTTCTTC
97347522 TGCTTTGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.34, G:0.07, T:0.55
Consensus pattern (15 bp):
TCTGCTTCTTCTTCA
Found at i:97350541 original size:44 final size:44
Alignment explanation
Indices: 97350491--97350580 Score: 146
Period size: 44 Copynumber: 2.0 Consensus size: 44
97350481 ATTTACACAC
* *
97350491 TATTAAAGATATATATAAATTATACAACTTGTTCCTACTT-GTAT
1 TATTAAAGATATATATAAATTATACAACTCGATCCTA-TTGGTAT
97350535 TATTAAAGATATATATAAATTATACAACTCGATCCTATTGGTAT
1 TATTAAAGATATATATAAATTATACAACTCGATCCTATTGGTAT
97350579 TA
1 TA
97350581 GGATACTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 2 0.05
44 41 0.95
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (44 bp):
TATTAAAGATATATATAAATTATACAACTCGATCCTATTGGTAT
Found at i:97353337 original size:2 final size:2
Alignment explanation
Indices: 97353330--97353362 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
97353320 ATCATGGGTA
97353330 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
97353363 TTCTTTACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:97355650 original size:12 final size:11
Alignment explanation
Indices: 97355633--97355658 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
97355623 ATCTCAATTT
97355633 AAAAAAAAAAG
1 AAAAAAAAAAG
97355644 AAAAAAAAAAG
1 AAAAAAAAAAG
97355655 AAAA
1 AAAA
97355659 CCCAGTGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:97357403 original size:15 final size:16
Alignment explanation
Indices: 97357383--97357416 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
97357373 AAATTAAAAC
97357383 TTTATATAT-AATTAT
1 TTTATATATAAATTAT
*
97357398 TTTATATTTAAATTAT
1 TTTATATATAAATTAT
97357414 TTT
1 TTT
97357417 TTCCATTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATATATAAATTAT
Found at i:97359144 original size:5 final size:5
Alignment explanation
Indices: 97359134--97359190 Score: 100
Period size: 5 Copynumber: 11.8 Consensus size: 5
97359124 AGTATAAATA
97359134 TATAT TATAT TATAT TATA- TATA- TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
97359182 TATAT TATA
1 TATAT TATA
97359191 ATAGTTTAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 8 0.16
5 43 0.84
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:97359144 original size:23 final size:23
Alignment explanation
Indices: 97359124--97359190 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
97359114 TTAGTATTCA
97359124 AGTATAAATATATATTATATTAT
1 AGTATAAATATATATTATATTAT
* *
97359147 ATTATATATATATATTATATTAT
1 AGTATAAATATATATTATATTAT
*
97359170 A-T-TATAT-TATATTATATTAT
1 AGTATAAATATATATTATATTAT
97359190 A
1 A
97359191 ATAGTTTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
20 14 0.33
21 5 0.12
22 1 0.02
23 22 0.52
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (23 bp):
AGTATAAATATATATTATATTAT
Found at i:97359264 original size:17 final size:16
Alignment explanation
Indices: 97359238--97359273 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
97359228 AGAAACAAAA
97359238 AGAATGAAAAAGAAAC
1 AGAATGAAAAAGAAAC
*
97359254 AGAATTGAAAACGAAAC
1 AGAA-TGAAAAAGAAAC
97359271 AGA
1 AGA
97359274 GAAGGAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.64, C:0.08, G:0.19, T:0.08
Consensus pattern (16 bp):
AGAATGAAAAAGAAAC
Found at i:97364344 original size:17 final size:20
Alignment explanation
Indices: 97364301--97364341 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
97364291 ATTGTTACTG
97364301 TTTTGTTGTTATTATATAAC
1 TTTTGTTGTTATTATATAAC
*
97364321 TTTTGTT-TTATTGT-TAAC
1 TTTTGTTGTTATTATATAAC
97364339 TTT
1 TTT
97364342 GTTACTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 6 0.30
20 7 0.35
ACGTcount: A:0.20, C:0.05, G:0.10, T:0.66
Consensus pattern (20 bp):
TTTTGTTGTTATTATATAAC
Found at i:97369348 original size:3 final size:3
Alignment explanation
Indices: 97369340--97369397 Score: 50
Period size: 3 Copynumber: 19.7 Consensus size: 3
97369330 CTTTATTAAA
* * *
97369340 TAT TAT TAT TAT TAT T-T CTAA TAT TAT TAT CAA TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
97369385 T-T T-T TAT ATAT TA
1 TAT TAT TAT -TAT TA
97369398 GTGTATGTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
2 5 0.11
3 37 0.82
4 3 0.07
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:97370340 original size:17 final size:17
Alignment explanation
Indices: 97370320--97370366 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
97370310 ATGTTCATTT
97370320 TATATATATTATGTATA
1 TATATATATTATGTATA
*
97370337 TATATATATTATGTATG
1 TATATATATTATGTATA
*
97370354 TATTTAGTATTAT
1 TATATA-TATTAT
97370367 CATGTGTACG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 21 0.78
18 6 0.22
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (17 bp):
TATATATATTATGTATA
Found at i:97370371 original size:21 final size:21
Alignment explanation
Indices: 97370320--97370371 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
97370310 ATGTTCATTT
97370320 TATATAT-AT-TATGTATATA
1 TATATATCATGTATGTATATA
* *
97370339 TATATATTATGTATGTATTTA
1 TATATATCATGTATGTATATA
97370360 GTAT-TATCATGT
1 -TATATATCATGT
97370372 GTACGTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 7 0.25
20 2 0.07
21 16 0.57
22 3 0.11
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.54
Consensus pattern (21 bp):
TATATATCATGTATGTATATA
Found at i:97373331 original size:23 final size:23
Alignment explanation
Indices: 97373304--97373371 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
97373294 TTTATTCTTC
*
97373304 TTATATTTATTACTAATATAT-TA
1 TTATAGTTATTA-TAATATATGTA
*
97373327 TTATAGTTATTATCATATATGTA
1 TTATAGTTATTATAATATATGTA
* *
97373350 TTATTAAGTTTTTATAACATAT
1 TTA-T-AGTTATTATAATATAT
97373372 TTATGTAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 7 0.19
23 16 0.43
24 1 0.03
25 13 0.35
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (23 bp):
TTATAGTTATTATAATATATGTA
Found at i:97373371 original size:25 final size:26
Alignment explanation
Indices: 97373322--97373371 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
97373312 ATTACTAATA
* *
97373322 TATTATTATAGTTATTATCATATATG
1 TATTATTATAGTTATTATAACATATG
*
97373348 TATTATTA-AGTTTTTATAACATAT
1 TATTATTATAGTTATTATAACATAT
97373372 TTATGTAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.54
Consensus pattern (26 bp):
TATTATTATAGTTATTATAACATATG
Found at i:97373723 original size:21 final size:21
Alignment explanation
Indices: 97373681--97373723 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
97373671 TCAATATAAA
* *
97373681 TATATATATATCATATAGGTT
1 TATATACATATCATACAGGTT
* *
97373702 TATATACATGTCATACATGTT
1 TATATACATATCATACAGGTT
97373723 T
1 T
97373724 CATTACTTCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (21 bp):
TATATACATATCATACAGGTT
Found at i:97373946 original size:13 final size:14
Alignment explanation
Indices: 97373923--97373952 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
97373913 AATATTCGAA
97373923 TATTATTATATGTG
1 TATTATTATATGTG
97373937 TATT-TTATATGTG
1 TATTATTATATGTG
97373950 TAT
1 TAT
97373953 ATGCTTTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (14 bp):
TATTATTATATGTG
Found at i:97377691 original size:3 final size:3
Alignment explanation
Indices: 97377683--97377714 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
97377673 TGTATTTCAA
*
97377683 TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
97377715 ACATTACTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:97377931 original size:31 final size:32
Alignment explanation
Indices: 97377894--97377954 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
97377884 TTAATAGTTA
* *
97377894 ATTAATTTTTATATATTA-TATGTATATATAT
1 ATTAATTTATATATAATATTATGTATATATAT
97377925 ATTAATTTATATATAATATTATGTATATAT
1 ATTAATTTATATATAATATTATGTATATAT
97377955 TTTAGTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (32 bp):
ATTAATTTATATATAATATTATGTATATATAT
Found at i:97377946 original size:12 final size:11
Alignment explanation
Indices: 97377903--97377966 Score: 51
Period size: 12 Copynumber: 5.6 Consensus size: 11
97377893 AATTAATTTT
97377903 TATATATTATA
1 TATATATTATA
*
97377914 TGTATA-TATA
1 TATATATTATA
97377924 TAT-TAATTTATA
1 TATAT-A-TTATA
*
97377936 TATAATATTATG
1 TAT-ATATTATA
*
97377948 TATATATTTTA
1 TATATATTATA
97377959 GTATATAT
1 -TATATAT
97377967 CAGTTAGTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
9 1 0.02
10 7 0.17
11 11 0.26
12 21 0.50
13 1 0.02
14 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (11 bp):
TATATATTATA
Found at i:97379868 original size:20 final size:22
Alignment explanation
Indices: 97379830--97379883 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
97379820 AAATCAATTT
*
97379830 AAATGTTTTTAATTGATTC-AAC-
1 AAAT-TTTTT-ATTAATTCGAACG
*
97379852 AAATTTTTTATTAATTCGATCG
1 AAATTTTTTATTAATTCGAACG
97379874 AAATTTTTTA
1 AAATTTTTTA
97379884 CCAACTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 7 0.25
21 7 0.25
22 14 0.50
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.50
Consensus pattern (22 bp):
AAATTTTTTATTAATTCGAACG
Found at i:97380058 original size:2 final size:2
Alignment explanation
Indices: 97380051--97380078 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
97380041 TACAAATAAT
97380051 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97380079 AGCACATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97380321 original size:23 final size:23
Alignment explanation
Indices: 97380293--97380347 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
97380283 TGGGTAACTA
97380293 ATTTTTACAAGT-TTTTTTGAATG
1 ATTTTT-CAAGTGTTTTTTGAATG
* *
97380316 ATTTTTCATGTGTTTTTTTAATG
1 ATTTTTCAAGTGTTTTTTGAATG
97380339 CAATTTTTC
1 --ATTTTTC
97380348 GAAAGAGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 4 0.15
23 16 0.59
25 7 0.26
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.60
Consensus pattern (23 bp):
ATTTTTCAAGTGTTTTTTGAATG
Found at i:97382862 original size:46 final size:46
Alignment explanation
Indices: 97382667--97382998 Score: 166
Period size: 46 Copynumber: 7.4 Consensus size: 46
97382657 ATAATTCTAT
* *
97382667 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * * ** * *
97382713 CTTCATGTATTTGGCAG-CGAAGCAGATCAAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGAT-TGAAGATTGCAGATCTTAC
*** * * * ** * * *
97382760 CTCCCTG-A--CCACAGTGGAGTACACTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
97382802 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * *
97382848 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * * *
97382894 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
97382936 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
*
97382982 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
97382999 CAAAGCAGGT
Statistics
Matches: 193, Mismatches: 76, Indels: 34
0.64 0.25 0.11
Matches are distributed among these distances:
41 6 0.03
42 20 0.10
43 14 0.07
44 7 0.04
45 40 0.21
46 79 0.41
47 27 0.14
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:97382945 original size:134 final size:134
Alignment explanation
Indices: 97382600--97383074 Score: 770
Period size: 134 Copynumber: 3.5 Consensus size: 134
97382590 AATAGATTGA
* * * *
97382600 AGATCAAGGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACCACAGTGGAGTACATTGAAGCCGATAACTCT
* *
97382665 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCATGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
97382730 CGAAGC
129 CGAAGC
*
97382736 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
97382801 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
97382866 GAAGC
130 GAAGC
97382871 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
97382936 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
97383001 AAGC
131 AAGC
* ** * ** * **
97383005 AGGTTGAAGACGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
97383070 CTCCC
66 CTCCC
97383075 GGGGCAAGAA
Statistics
Matches: 320, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
134 188 0.59
135 106 0.33
136 5 0.02
137 21 0.07
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:97383210 original size:88 final size:89
Alignment explanation
Indices: 97383082--97384401 Score: 989
Period size: 88 Copynumber: 14.9 Consensus size: 89
97383072 CCCGGGGCAA
* * * * * *
97383082 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGACG-ACGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
97383145 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * *
97383169 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * * *
97383233 ATG-TCCTATCTTCCTATATTGATAG
65 A-GATCTTGTCTTCCTATATTGGTGG
* * * * * * * *
97383258 GAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* * * *
97383322 GATCTTGTCTTCATGTATTGGCGT
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * * * * *
97383346 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
97383409 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * *
97383433 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAA-
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGA-AAG
* * * * * *
97383496 CAGGTCCTATCTTCCTATAATGATTG
64 CAGATCTTGTCTTCCTATATTGGTGG
** * * * *
97383522 GAAGCGGATCGACG-ACGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAGC
* * * *
97383585 AGATCTTGTCTTCATGTATTGGCGT
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * *
97383610 GAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGACG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
97383673 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * **
97383697 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * *
97383761 AGATCCTATCTTCCTATATTGGTAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * ** * * **
97383786 GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGCGGGGAAGTAGATCGAAGGTAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* * *
97383850 GATCCTATCTTCCTATATTGGTAG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * *
97383874 GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTG-CAGAAAGC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAGC
*
97383937 AGATCTTGTCTTCCCATATTGGTGG
65 AGATCTTGTCTTCCTATATTGGTGG
** * * * * * * *
97383962 CGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGA
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
*
97384025 AGATCTTGTCTTCCCATATTGGTGG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * **
97384050 CAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * *
97384114 AGATCCTATCTTCCTATATTGGTAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * * *
97384139 GAAGTGGATCAAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTG-CAGAAAGC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAGC
* * * *
97384202 AGATCTTGTCTTCATGTATTGGCGT
65 AGATCTTGTCTTCCTATATTGGTGG
* ** ** * * *
97384227 GAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGTAG-GAAGTGGATTGACG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* *
97384290 GATCTTGTCTTCCCATACTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * * *
97384314 TGAAGTAGATCGAAAAAAAAAAACAGATCTTATCTTCGTGTATTGG-CGTGAAGTAGATCGAAGA
1 -GAAGTAGATCG----AAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGA
** * *
97384378 TTGCAGATCTTGCCTTCCTGTATT
61 AAGCAGATCTTGTCTTCCTATATT
97384402 TGGCAGCGAA
Statistics
Matches: 969, Mismatches: 227, Indels: 67
0.77 0.18 0.05
Matches are distributed among these distances:
87 161 0.17
88 556 0.57
89 176 0.18
90 24 0.02
91 1 0.00
92 32 0.03
93 19 0.02
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (89 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
GATCTTGTCTTCCTATATTGGTGG
Found at i:97383319 original size:132 final size:132
Alignment explanation
Indices: 97383082--97384214 Score: 1312
Period size: 132 Copynumber: 8.6 Consensus size: 132
97383072 CCCGGGGCAA
* * * *
97383082 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
97383147 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
97383212 GT
131 GT
* * * *
97383214 GAAGTAGATCGAAGATAGCATGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
97383279 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
97383344 GT
131 GT
* *
97383346 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
97383411 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
97383476 GT
131 GT
* * * * * * * *
97383478 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGCGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
97383543 TCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGG
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA-AGAAAGCAGATCTTGTCTTCATGTATTGG
97383607 CGT
130 CGT
* * * * *
97383610 GAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
97383675 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
97383740 GT
131 GT
* *
97383742 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* * ** * * * *
97383807 TCTTGTCTTCCCATATTGGCGGGGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-
*
97383872 AG-
130 CGT
* * * * * * * * * *
97383874 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
** * * * * *
97383938 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTG
64 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
*
97384003 GTAG-
129 G-CGT
* * * * * * * *
97384007 GAAGTGGATCGAAGAT-GAAGATCTTGTCTTCCCATATTGGT-GGCAAAGTAGATCGAAGAAAGC
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGG--AAGTGGATCGAAG-ATGC
*** * * ** * * * *
97384070 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
63 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
*
97384134 GGTAG-
128 GG-CGT
* * * * * * * * * * *
97384139 GAAGTGGATCAAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
97384203 GATCTTGTCTTC
64 GATCTTGTCTTC
97384215 ATGTATTGGC
Statistics
Matches: 914, Mismatches: 78, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
131 24 0.03
132 742 0.81
133 147 0.16
134 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:97384215 original size:132 final size:132
Alignment explanation
Indices: 97383082--97384401 Score: 1040
Period size: 132 Copynumber: 10.0 Consensus size: 132
97383072 CCCGGGGCAA
* * * * * * * * *
97383082 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGACG-ACGCA
1 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
* * * ** * * *
97383145 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
65 GATCTTGTCTTCCCATATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTG
*
97383210 G-CG
129 GTAG
* * * * * * * * *
97383213 TGAAGTAGATCGAAGATAGCATG-TCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGATA-
1 -GAAGTGGATCGAAGAT-GCA-GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAG
* * ** * * * *
97383275 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTAT
63 CAGATCTTGTCTTCCCATATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATAT
*
97383340 TGG-CG
127 TGGTAG
* * * * * * * * * *
97383345 TGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* * * ** * * *
97383408 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCCCATATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATT
*
97383473 GG-CG
128 GGTAG
* * * * * * * * * * ** * *
97383477 TGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTG-GAAGCGGATCGACG-ACGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* ** * * *
97383540 AGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTAT
64 AGATCTTGTCTTCCCATATTGG-CGTGAAGTAGATCGA-AGGTAGCAGATCCTGTCTTCCTATAT
*
97383604 TGG-CG
127 TGGTAG
* * * * * * * * *
97383609 TGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGACG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* * * ** * * *
97383672 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCCCATATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATT
*
97383737 GG-CG
128 GGTAG
* * * * * * * *
97383741 TGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* *
97383804 AGATCTTGTCTTCCCATATTGGCGGGGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
64 AGATCTTGTCTTCCCATATTGGC-GTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATT
97383869 GGTAG
128 GGTAG
* *
97383874 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* * * *
97383939 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTGG
66 ATCTTGTCTTCCCATATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTGG
97384004 TAG
130 TAG
* *
97384007 GAAGTGGATCGAAGATGAAGATCTTGTCTTCCCATATTGGTGGCAAAGTAGATCGAAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
*** *
97384072 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
66 ATCTTGTCTTCCCATATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTGGT
97384137 AG
131 AG
* * *
97384139 GAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
*** * *
97384204 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGT
66 ATCTTGTCTTCCCATATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTGGT
97384269 AG
131 AG
* * * * *
97384271 GAAGTGGATTGACGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAAAAAAAAA
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG----AAGAAA
* * *** * * * * *
97384336 ACAGATCTTATCTTCGTGTATTGGCGTGAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTAT
62 GCAGATCTTGTCTTCCCATATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATAT
97384401 T
127 T
97384402 TGGCAGCGAA
Statistics
Matches: 1074, Mismatches: 99, Indels: 26
0.90 0.08 0.02
Matches are distributed among these distances:
131 24 0.02
132 841 0.78
133 149 0.14
136 60 0.06
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
ATCTTGTCTTCCCATATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTGGT
AG
Found at i:97384430 original size:46 final size:44
Alignment explanation
Indices: 97384337--97384444 Score: 117
Period size: 46 Copynumber: 2.4 Consensus size: 44
97384327 AAAAAAAAAA
* * * * * *
97384337 CAGATCTTATCTTCGTGTATTGGCGTGAAGTAGATCGAAGATTG
1 CAGATCTTACCTTCCTGTATTGGCGCGAAGCAGATCAAAGATGG
*
97384381 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGG
1 CAGATCTTACCTTCCTGTA-TTGGC-GCGAAGCAGATCAAAGATGG
* *
97384427 CAGATTTTACCTCCCTGT
1 CAGATCTTACCTTCCTGT
97384445 GACTACAGTG
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 16 0.31
45 5 0.10
46 31 0.60
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (44 bp):
CAGATCTTACCTTCCTGTATTGGCGCGAAGCAGATCAAAGATGG
Found at i:97386061 original size:23 final size:23
Alignment explanation
Indices: 97386017--97386062 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
97386007 ATATTACCAT
**
97386017 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
97386040 TATTTTTATTATGTACGGGTATA
1 TATTATTATTATGTACGAGTATA
97386063 CCTATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:97386329 original size:19 final size:19
Alignment explanation
Indices: 97386294--97386330 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
97386284 ATATATTACC
**
97386294 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
97386313 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
97386331 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:97388498 original size:19 final size:20
Alignment explanation
Indices: 97388458--97388501 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
97388448 GTCTCTTTAG
* *
97388458 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
97388477 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
97388496 GCATTA
1 GCATTA
97388502 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:97392783 original size:86 final size:86
Alignment explanation
Indices: 97392587--97393019 Score: 656
Period size: 86 Copynumber: 5.1 Consensus size: 86
97392577 AGTAAAAATT
* * * * * * *
97392587 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAG-TGGTTGAAGTTATCAGATCTTGCCTTCC-
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
97392650 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
97392671 GAA-ACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
97392735 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* *
97392756 GAACACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCAT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
97392821 TCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
97392842 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
97392907 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * * * * * *
97392928 GAAGATAAACCTTGCCTCTGTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
97392993 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
97393015 GAAGA
1 GAAGA
97393020 TGGCAGATTT
Statistics
Matches: 322, Mismatches: 23, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
83 26 0.08
84 29 0.09
85 24 0.07
86 222 0.69
87 21 0.07
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:97393137 original size:46 final size:46
Alignment explanation
Indices: 97393075--97394039 Score: 263
Period size: 46 Copynumber: 21.4 Consensus size: 46
97393065 ATAATTCTAT
*
97393075 CTCCCTGTATTTGGCAGTGGAATAAATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
97393121 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * *
97393167 CTCCCTG-A--CCACAGTGGAGTACATTGAAGCAAT--A-ATTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAG-ATTGCAGA-TCT-TGC
97393208 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
97393254 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
* * * * ** * * **
97393300 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
* *
97393342 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAGGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT------T-GCAGATCTTGC
* ** * * * ** *
97393395 CTCCATGTAACT-ACAGTGGAGTACATTGAAG-CCG-ATAATTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GA-TCT-TGC
*
97393439 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
97393485 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGAT-TGAAGATTGCAGATCTTGC
*** * * * ** * * **
97393532 CTCCCTG-A--CCACAGTGGAGTACACTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
97393574 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
97393620 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * ** * * **
97393666 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
97393708 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
97393754 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGAT-TGAAGATTGCAGATCTTGC
*** * * * ** * * **
97393801 CTCCCTG-A--CCACAGTGGAGTACACTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
97393843 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * * *
97393889 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGTAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * ** * * **
97393935 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
97393977 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
*
97394023 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
97394040 CAAAGCAGGT
Statistics
Matches: 621, Mismatches: 228, Indels: 140
0.63 0.23 0.14
Matches are distributed among these distances:
41 23 0.04
42 54 0.09
43 51 0.08
44 49 0.08
45 129 0.21
46 227 0.37
47 57 0.09
52 16 0.03
53 12 0.02
54 3 0.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
Found at i:97393268 original size:133 final size:134
Alignment explanation
Indices: 97392967--97393375 Score: 723
Period size: 134 Copynumber: 3.1 Consensus size: 134
97392957 GCAGAGCTGG
* * *
97392967 TTGAAGATAT-CAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
97393031 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGA
65 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGA
*
97393096 ATAAA
130 ATAGA
97393101 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* *
97393166 CCTCCCTGACCACAGTGGAGTACATTGAAG-CAATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
97393230 TAGA
131 TAGA
97393234 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* *
97393299 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
97393364 TAGA
131 TAGA
97393368 TTGAAGAT
1 TTGAAGAT
97393376 CAAGGATGGC
Statistics
Matches: 264, Mismatches: 9, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
133 131 0.50
134 133 0.50
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
TAGA
Found at i:97393362 original size:45 final size:45
Alignment explanation
Indices: 97393311--97393470 Score: 124
Period size: 45 Copynumber: 3.4 Consensus size: 45
97393301 TCCCTGACTA
* *
97393311 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGG
* * * * * ** *
97393356 CAGTGGAATAGATTGAAGATCAAGGATGGCAGATTTTACCTCCATGTAACT-A
1 CAGTGGAATACATTGAAG--C--CGAT---A-ATTCTATCTCCCTGTATTTGG
* *
97393408 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTATATTTGG
1 CAGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGG
*
97393453 CAGTGGAATAGATTGAAG
1 CAGTGGAATACATTGAAG
97393471 ATTGCAGATC
Statistics
Matches: 84, Mismatches: 22, Indels: 18
0.68 0.18 0.15
Matches are distributed among these distances:
44 13 0.15
45 33 0.39
47 1 0.01
48 3 0.04
49 3 0.04
50 1 0.01
52 17 0.20
53 13 0.15
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (45 bp):
CAGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGG
Found at i:97393391 original size:95 final size:96
Alignment explanation
Indices: 97393277--97393472 Score: 340
Period size: 97 Copynumber: 2.0 Consensus size: 96
97393267 GCAGCGAAGC
*
97393277 AGATCAAAGATGGCAGATTTTACCTCCCTG-ACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCATGAACTACAGTGGAGTACATTGAAGCCGATAACTCTA
*
97393341 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
66 TCTCCCTATATTTGGCAGTGGAATAGATTGA
* *
97393372 AGATCAAGGATGGCAGATTTTACCTCCATGTAACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCATG-AACTACAGTGGAGTACATTGAAGCCGATAACTCT
97393437 ATCTCCCTATATTTGGCAGTGGAATAGATTGA
65 ATCTCCCTATATTTGGCAGTGGAATAGATTGA
97393469 AGAT
1 AGAT
97393473 TGCAGATCTT
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
95 28 0.29
97 67 0.71
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (96 bp):
AGATCAAAGATGGCAGATTTTACCTCCATGAACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCTATATTTGGCAGTGGAATAGATTGA
Found at i:97393601 original size:232 final size:228
Alignment explanation
Indices: 97393144--97393607 Score: 829
Period size: 232 Copynumber: 2.0 Consensus size: 228
97393134 GCAGCGAAGC
*
97393144 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCAATAATTCTATC
1 AGATCAAAGATGGCAGATTTTACCTCCATGACCACAGTGGAGTACATTGAAGCAATAATTCTATC
*
97393209 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGA
66 TCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGA
* *
97393274 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTC
131 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTC
97393339 TATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 TATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
97393372 AGATCAAGGATGGCAGATTTTACCTCCATGTAACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCATG--ACCACAGTGGAGTACATTGAAG-CAATAATTCT
97393437 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
63 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
97393502 CGAAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATA
128 CGAAGCAGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATA
97393567 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
192 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
97393604 AGAT
1 AGAT
97393608 TGCAGATCTT
Statistics
Matches: 225, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
228 28 0.12
230 21 0.09
231 84 0.37
232 92 0.41
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (228 bp):
AGATCAAAGATGGCAGATTTTACCTCCATGACCACAGTGGAGTACATTGAAGCAATAATTCTATC
TCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGA
AGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTC
TATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:97393713 original size:366 final size:362
Alignment explanation
Indices: 97393010--97393741 Score: 1340
Period size: 366 Copynumber: 2.0 Consensus size: 362
97393000 GCAGCGAAGC
*
97393010 AGATCGAAGATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCATGACAACAGTGGAGTACATTGAAGCCGATAATTCTAT
*
97393075 CTCCCTGTATTTGGCAGTGGAATAAATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTATATTTGGCAGTGGAATAAATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* *
97393140 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCAATAATTC
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCAATAACTC
97393205 TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
196 TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
*
97393270 GCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATA
261 GCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATA
97393335 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
326 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
97393372 AGATC-AAGGATGGCAGATTTTACCTCCATGTAACTACAGTGGAGTACATTGAAGCCGATAATTC
1 AGATCGAA-GATGGCAGATTTTACCTCCATG--ACAACAGTGGAGTACATTGAAGCCGATAATTC
*
97393436 TATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
63 TATCTCCCTATATTTGGCAGTGGAATAAATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
*
97393501 GCGAAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGAT
128 GCGAAGCAGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAG-CAAT
97393566 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATT
191 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATT
97393631 TGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGC
256 TGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGC
97393696 CGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
321 CGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
97393738 AGAT
1 AGAT
97393742 TGCAGATCTT
Statistics
Matches: 357, Mismatches: 8, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
361 2 0.01
362 26 0.07
364 106 0.30
365 46 0.13
366 177 0.50
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (362 bp):
AGATCGAAGATGGCAGATTTTACCTCCATGACAACAGTGGAGTACATTGAAGCCGATAATTCTAT
CTCCCTATATTTGGCAGTGGAATAAATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCAATAACTC
TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
GCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATA
ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Done.