Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 307 of 325
Found at i:97393718 original size:134 final size:134
Alignment explanation
Indices: 97393372--97394115 Score: 1281
Period size: 134 Copynumber: 5.5 Consensus size: 134
97393362 AATAGATTGA
* * * *
97393372 AGATCAAGGATGGCAGATTTTACCTCCATGTAACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG--ACCACAGTGGAGTACATTGAAGCCGATAACTCT
*
97393437 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
97393502 CGAAGC
129 CGAAGC
*
97393508 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
97393573 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
97393638 GAAGC
130 GAAGC
97393643 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
97393708 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
97393773 AAGC
131 AAGC
*
97393777 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
97393842 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
97393907 GAAGC
130 GAAGC
*
97393912 AGATCAAAGATGGTAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
97393977 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
97394042 AAGC
131 AAGC
* ** * * ** * **
97394046 AGGTTGAAGACGGTAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
97394111 CTCCC
66 CTCCC
97394116 GGGGCAAGAA
Statistics
Matches: 586, Mismatches: 20, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
134 320 0.55
135 238 0.41
136 5 0.01
137 23 0.04
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:97393742 original size:269 final size:269
Alignment explanation
Indices: 97393372--97394115 Score: 1301
Period size: 269 Copynumber: 2.8 Consensus size: 269
97393362 AATAGATTGA
* * * *
97393372 AGATCAAGGATGGCAGATTTTACCTCCATGTAACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG--ACCACAGTGGAGTACATTGAAGCCGATAACTCT
*
97393437 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
97393502 CGAAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATA
129 CGAAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATA
97393567 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTT
194 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTT
97393632 GGCAGCGAAGC
259 GGCAGCGAAGC
97393643 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
97393708 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
97393773 AAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAAC
131 AAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAAC
97393838 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGG
196 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGG
97393903 CAGCGAAGC
261 CAGCGAAGC
*
97393912 AGATCAAAGATGGTAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
97393977 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* ** * * ** * * **
97394042 AAGCAGGT-TGAAGACGGTAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGT
131 AAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAAC
97394106 TCTATCTCCC
196 TCTATCTCCC
97394116 GGGGCAAGAA
Statistics
Matches: 455, Mismatches: 18, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
268 56 0.12
269 371 0.82
271 28 0.06
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (269 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAAC
TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGG
CAGCGAAGC
Found at i:97394251 original size:88 final size:89
Alignment explanation
Indices: 97394123--97395440 Score: 976
Period size: 88 Copynumber: 14.9 Consensus size: 89
97394113 CCCGGGGCAA
* * * * * *
97394123 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGACG-ACGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
97394186 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * *
97394210 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * * * *
97394274 AGGTCCTATCTTCCTATATTGATAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * * * *
97394299 GAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* * * *
97394363 GATCTTGTCTTCATGTATTGGCGT
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * * * * *
97394387 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
97394450 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * *
97394474 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAA-
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGA-AAG
* * * * * *
97394537 CAGGTCCTATCTTCCTATAATGATTG
64 CAGATCTTGTCTTCCTATATTGGTGG
* * * * *
97394563 GAAG-CGAATCGACG-ACGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAG
1 GAAGTAG-ATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAG
* * * *
97394625 CAGATCTTGTCTTCATGTATTGGCGT
64 CAGATCTTGTCTTCCTATATTGGTGG
* * * * * *
97394651 GAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGACG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
97394714 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * **
97394738 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * *
97394802 AGATCCTATCTTCCTATATTGGTAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * ** * * **
97394827 GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGGTAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* * *
97394891 GATCCTATCTTCCTATATTGGTAG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * * *
97394915 GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTG-CTGAAAGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAGC
*
97394978 AGATCTTGTCTTCCCATATTGGTGG
65 AGATCTTGTCTTCCTATATTGGTGG
** * * * * * *
97395003 CGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
*
97395066 AGATCTTGTCTTCCCATATTGGTGG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * * **
97395091 CAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGGTAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * *
97395155 AGATCATATCTTCCTATATTGGTAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * * * *
97395180 GAAGTGGATCAAAG-ATGCAGATCTTGTATTCCCATATTGGTGGCGAAGTAGATTG-CAGAAAGC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAGC
* * * *
97395243 AGATCTTGTCTTCATGTATTGGCGT
65 AGATCTTGTCTTCCTATATTGGTGG
* ** ** * * *
97395268 GAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGTAG-GAAGTGGATTGACG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* *
97395331 GATCTTGTCTTCCCATACTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* ** * * * * * **
97395355 TGAAGTAGATCGAAAAAAAAATAGATCTTATCTTCGTGTATTGG-CGTGAAGTAGATCGAAGATT
1 -GAAGTAGATCG--AAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAA
* *
97395419 GCAGATCTTGCCTTCCTGTATT
63 GCAGATCTTGTCTTCCTATATT
97395441 TGGCAGCGAA
Statistics
Matches: 965, Mismatches: 231, Indels: 65
0.77 0.18 0.05
Matches are distributed among these distances:
87 160 0.17
88 553 0.57
89 179 0.19
90 54 0.06
91 19 0.02
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (89 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
GATCTTGTCTTCCTATATTGGTGG
Found at i:97394360 original size:132 final size:132
Alignment explanation
Indices: 97394123--97395255 Score: 1307
Period size: 132 Copynumber: 8.6 Consensus size: 132
97394113 CCCGGGGCAA
* * *
97394123 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
97394188 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
97394253 GT
131 GT
* * * *
97394255 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
97394320 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
97394385 GT
131 GT
* * *
97394387 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
97394452 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
97394517 GT
131 GT
* * * * * * * * * *
97394519 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGCGAATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
97394584 TCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGG
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA-AGAAAGCAGATCTTGTCTTCATGTATTGG
97394648 CGT
130 CGT
* * * * * *
97394651 GAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
97394716 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
97394781 GT
131 GT
*
97394783 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* ** * * * *
97394848 TCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-
*
97394913 AG-
130 CGT
* * * * * *
97394915 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCTGAA-A-G
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGA-T-C-GAAGATG
* ** * * * * *
97394977 TAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATAT
62 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
*
97395042 TGGTAG-
127 TGG-CGT
* * * * * *
97395048 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGT-GGCAAAGTAGATCGAAGAAAGC
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGG--AAGTGGATCGAAG-ATGC
*** * * * ** * * * *
97395111 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGGTAGCAGATCATATCTTCCTATATT
63 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
*
97395175 GGTAG-
128 GG-CGT
* * * * * * * * * * *
97395180 GAAGTGGATCAAAGAT-GCAGATCTTGTATTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
97395244 GATCTTGTCTTC
64 GATCTTGTCTTC
97395256 ATGTATTGGC
Statistics
Matches: 913, Mismatches: 74, Indels: 28
0.90 0.07 0.03
Matches are distributed among these distances:
130 3 0.00
131 25 0.03
132 739 0.81
133 140 0.15
134 3 0.00
135 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:97395256 original size:132 final size:132
Alignment explanation
Indices: 97394123--97395425 Score: 862
Period size: 132 Copynumber: 9.8 Consensus size: 132
97394113 CCCGGGGCAA
* * * * * * * * *
97394123 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGACG-ACGCA
1 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
*** * * * ** * * * *
97394186 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
65 GATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTG
*
97394251 G-CG
129 GTAG
* * * * * * * * * *
97394254 TGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGATA-C
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
*** * * ** * * * * *
97394317 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
*
97394382 GG-CG
128 GGTAG
* * * * * * * * * *
97394386 TGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
*** * * * ** * * * *
97394449 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
*
97394514 GG-CG
128 GGTAG
* * * * * * * * * * * * *
97394518 TGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTG-GAAG-CGAATCGACG-ACG
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAG-ATCGAAGAAAG
*** * ** * * * *
97394580 CAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTA
63 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGA-AGGTAGCAGATCCTATCTTCCTATA
*
97394644 TTGG-CG
126 TTGGTAG
* * * * * * * * *
97394650 TGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGACG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
*** * * * ** * * * *
97394713 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
*
97394778 GG-CG
128 GGTAG
* * * * * * * *
97394782 TGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
*** *
97394845 AGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
64 AGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
97394910 GGTAG
128 GGTAG
* ** *
97394915 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCTGAAAGTAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
*** * * *
97394980 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTGG
66 ATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGG
97395045 TAG
130 TAG
*
97395048 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCAAAGTAGATCGAAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* *
97395113 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGGTAGCAGATCATATCTTCCTATATTGGT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
97395178 AG
131 AG
* * * *
97395180 GAAGTGGATCAAAGATGCAGATCTTGTATTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* **
97395245 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
97395310 AG
131 AG
* * * * * **
97395312 GAAGTGGATTGACGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAAAAAAAAT
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG--AAGAAAGC
* * * *
97395377 AGATCTTATCTTCGTGTATTGGCGTGAAGTAGATCGAAGATTGCAGATC
64 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATC
97395426 TTGCCTTCCT
Statistics
Matches: 1057, Mismatches: 101, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
131 24 0.02
132 837 0.79
133 148 0.14
134 48 0.05
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
AG
Found at i:97395457 original size:46 final size:44
Alignment explanation
Indices: 97395377--97395483 Score: 115
Period size: 46 Copynumber: 2.4 Consensus size: 44
97395367 AAAAAAAAAT
* * * * * *
97395377 AGATCTTATCTTCGTGTATTGGCGTGAAGTAGATCGAAGATTGC
1 AGATCTTACCTTCCTGTATTGGCGCGAAGCAGATCAAAGATGGC
*
97395421 AGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGC
1 AGATCTTACCTTCCTGTA-TTGGC-GCGAAGCAGATCAAAGATGGC
* *
97395467 AGATTTTACCTCCCTGT
1 AGATCTTACCTTCCTGT
97395484 GACTACAGTG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 15 0.29
45 5 0.10
46 31 0.61
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (44 bp):
AGATCTTACCTTCCTGTATTGGCGCGAAGCAGATCAAAGATGGC
Found at i:97397106 original size:23 final size:23
Alignment explanation
Indices: 97397062--97397107 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
97397052 ATATTACCAT
**
97397062 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
97397085 TATTTTTATTATGTACGGGTATA
1 TATTATTATTATGTACGAGTATA
97397108 CCTATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:97397374 original size:19 final size:19
Alignment explanation
Indices: 97397339--97397375 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
97397329 ATATATTACC
**
97397339 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
97397358 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
97397376 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:97406307 original size:18 final size:19
Alignment explanation
Indices: 97406280--97406321 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
97406270 GTAATAAATT
*
97406280 TATATTTATATTA-ATATC
1 TATATCTATATTATATATC
*
97406298 TATATCTATATTATCTATC
1 TATATCTATATTATATATC
97406317 TATAT
1 TATAT
97406322 ATTTAGTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.55
Consensus pattern (19 bp):
TATATCTATATTATATATC
Found at i:97408523 original size:3 final size:3
Alignment explanation
Indices: 97408515--97408540 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
97408505 AGATTTAAAA
97408515 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
97408541 AAAGGTTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:97411863 original size:26 final size:27
Alignment explanation
Indices: 97411830--97411884 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
97411820 TGCTGCAAAA
**
97411830 TTTTTTTTGACAAGTGCAAC-ATCACT
1 TTTTTTTTGACAACAGCAACAATCACT
*
97411856 TTTTTTTTTACAACAGCAACAATCACT
1 TTTTTTTTGACAACAGCAACAATCACT
97411883 TT
1 TT
97411885 CCATTTGTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.44
Consensus pattern (27 bp):
TTTTTTTTGACAACAGCAACAATCACT
Found at i:97413157 original size:12 final size:12
Alignment explanation
Indices: 97413133--97413212 Score: 74
Period size: 12 Copynumber: 6.6 Consensus size: 12
97413123 GAGAGGGCAT
97413133 ATATAATATAATA
1 ATATAA-ATAATA
97413146 ATATAAATAATA
1 ATATAAATAATA
* *
97413158 ATATATACATGAGA
1 ATATA-A-ATAATA
97413172 A-AT-AATAATA
1 ATATAAATAATA
97413182 ATATAAATAATA
1 ATATAAATAATA
* *
97413194 GTAAAAATAATA
1 ATATAAATAATA
*
97413206 AAATAAA
1 ATATAAA
97413213 AAAAATAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 3 0.06
12 32 0.59
13 9 0.17
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:97413208 original size:9 final size:9
Alignment explanation
Indices: 97413142--97413220 Score: 54
Period size: 9 Copynumber: 8.6 Consensus size: 9
97413132 TATATAATAT
*
97413142 AATAATATA
1 AATAATAAA
97413151 AATAATAATA
1 AATAATAA-A
* *
97413161 TATACATGAGA
1 AATA-AT-AAA
*
97413172 AATAATAAT
1 AATAATAAA
97413181 AAT-ATAAA
1 AATAATAAA
*
97413189 TAATAGTAAA
1 -AATAATAAA
97413199 AATAAT-AA
1 AATAATAAA
*
97413207 AATAAAAAA
1 AATAATAAA
97413216 AATAA
1 AATAA
97413221 AACAAAGCTC
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
8 11 0.20
9 26 0.48
10 10 0.19
11 6 0.11
12 1 0.02
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (9 bp):
AATAATAAA
Found at i:97414085 original size:41 final size:42
Alignment explanation
Indices: 97414028--97414113 Score: 129
Period size: 41 Copynumber: 2.1 Consensus size: 42
97414018 AGACACATGA
*
97414028 CTTCAATTAATTCCACTAAAACTTCAAGGAGATCTGCTGTAG
1 CTTCAATTAATTCCACTAAAACTTCAAGGAAATCTGCTGTAG
* * *
97414070 CTTCGATTAA-TCCACTGAAACTTCAAGGAAATCTGCTGTGG
1 CTTCAATTAATTCCACTAAAACTTCAAGGAAATCTGCTGTAG
97414111 CTT
1 CTT
97414114 TTAGCTGCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 31 0.77
42 9 0.22
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (42 bp):
CTTCAATTAATTCCACTAAAACTTCAAGGAAATCTGCTGTAG
Found at i:97414192 original size:68 final size:68
Alignment explanation
Indices: 97414079--97414347 Score: 441
Period size: 68 Copynumber: 4.0 Consensus size: 68
97414069 GCTTCGATTA
* *
97414079 ATCCACTGAAACTTCAAGGAAATCTGCTGTGGCTTTTAGCTGCTCCAACGCCATTTCAGGGAGAA
1 ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
97414144 AAG
66 AAG
* ** *
97414147 ATTCACTGAAACTTCAAGGAGATCTATTGTGGCTTTTAGCCGCTCCAACGCCATATCAGGGAGAA
1 ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
*
97414212 GAG
66 AAG
97414215 ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGA-AA
1 ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
97414279 AGAG
66 A-AG
* *
97414283 ATCCACTGAAACTTCAAGGAGATCTTCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAAGGAGAA
1 ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
97414348 GATATTTGAT
Statistics
Matches: 185, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
67 2 0.01
68 181 0.98
69 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (68 bp):
ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
AAG
Found at i:97414436 original size:44 final size:44
Alignment explanation
Indices: 97414365--97414605 Score: 163
Period size: 44 Copynumber: 5.5 Consensus size: 44
97414355 GATTTTCAAC
* *
97414365 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCATCATTAAT
* * * ** * *
97414409 CTGTTTCCCTACTGCTTAGAGGTTTAAGATCTTGT-AAAATAAAC
1 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTCATCATTAAT
** * * *
97414453 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATC-GCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCATCATT-AAT
** * * * *
97414497 CTGTTTTCCTACTGCTTAGGGGGTTAA-GATCTGT-A-AATTTAGT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCT-TGTCATCA-TTAAT
* * **
97414540 CTGTTACCCTACTGCTTAGGGTTTTAAGACTCATCATC-TTCAAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCATCATT-AAT
97414584 CTGCTT-CCCTACTGCTTAGGGG
1 CTG-TTACCCTACTGCTTAGGGG
97414606 GTTGCGATCT
Statistics
Matches: 145, Mismatches: 41, Indels: 22
0.70 0.20 0.11
Matches are distributed among these distances:
43 33 0.23
44 105 0.72
45 7 0.05
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCATCATTAAT
Found at i:97414559 original size:87 final size:87
Alignment explanation
Indices: 97414362--97414621 Score: 324
Period size: 87 Copynumber: 3.0 Consensus size: 87
97414352 TTTGATTTTC
* ** *
97414362 AACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATT-GATCTGTTTCCCTACTGCTT
1 AACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCA-CCTTCGATCTGTTTCCCTACTGCTT
* * *
97414426 AGAGGTTTAAGATCTTGTAAAATA
65 AGGGGGTTAAGATC-TGTAAATTA
* *
97414450 AACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCGCCTTCGATCTGTTTTCCTACTGCTTA
1 AACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATCTGTTTCCCTACTGCTTA
*
97414515 GGGGGTTAAGATCTGTAAATTT
66 GGGGGTTAAGATCTGTAAATTA
** * * * * *
97414537 AGTCTGTTACCCTACTGCTTAGGGTTTTAAGACTCATCATCTTCAATCTGCTTCCCTACTGCTTA
1 AACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATCTGTTTCCCTACTGCTTA
**
97414602 GGGGGTTGCGATCTGTAAAT
66 GGGGGTTAAGATCTGTAAAT
97414622 CTTCAATCTA
Statistics
Matches: 150, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
87 84 0.56
88 66 0.44
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (87 bp):
AACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATCTGTTTCCCTACTGCTTA
GGGGGTTAAGATCTGTAAATTA
Found at i:97414892 original size:88 final size:86
Alignment explanation
Indices: 97414719--97414933 Score: 234
Period size: 88 Copynumber: 2.5 Consensus size: 86
97414709 AATTTTCAGC
* * * * * * **
97414719 CTATTACCCTACTACTGAGGGGGTTAAGGTCTATAAATTTGGCTTGTTACCCTACTGCTTAGGGG
1 CTATTCCCCTACTGCTTATGGGG-TAAGATCTATGAATTCAGCTTGTTACCCTACTGCTTAGGGG
**
97414784 GTTAAAGCTCATTATTTTCGAT
65 GTTAAAGCTCATTACCTTCGAT
* *
97414806 CTGTTTCCCTACTGCTTA-GGGTGATAAGATCTATGAACTTCAGCTTGTTACCCTACTGCTTAGG
1 CTATTCCCCTACTGCTTATGGG-G-TAAGATCTATGAA-TTCAGCTTGTTACCCTACTGCTTAGG
* * *
97414870 GGGTTAAAGGTCGTTGCCTTCGAT
63 GGGTTAAAGCTCATTACCTTCGAT
* *
97414894 CTATTCCCCTATTGCTTATGGGGTAAGATCTGTGAATTCA
1 CTATTCCCCTACTGCTTATGGGGTAAGATCTATGAATTCA
97414934 CTGATTCTAG
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
86 7 0.07
87 38 0.36
88 59 0.55
89 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.36
Consensus pattern (86 bp):
CTATTCCCCTACTGCTTATGGGGTAAGATCTATGAATTCAGCTTGTTACCCTACTGCTTAGGGGG
TTAAAGCTCATTACCTTCGAT
Found at i:97414904 original size:44 final size:43
Alignment explanation
Indices: 97414763--97414924 Score: 127
Period size: 44 Copynumber: 3.7 Consensus size: 43
97414753 AAATTTGGCT
* *
97414763 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATT-ATTTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGATC-TTGA-CTTCGATC
* * * *
97414807 TGTTTCCCTACTGCTTAGGGTGAT-AAGATCTATGAACTTC-AGC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGATCT-TG-ACTTCGATC
* *
97414850 TTGTTACCCTACTGCTTAGGGGGTTAAAGGTCGTTGCCTTCGATC
1 -TGTTACCCTACTGCTTAGGGGGTTAAAGATC-TTGACTTCGATC
* * * *
97414895 TATTCCCCTATTGCTTATGGGG-T-AAGATCT
1 TGTTACCCTACTGCTTAGGGGGTTAAAGATCT
97414925 GTGAATTCAC
Statistics
Matches: 94, Mismatches: 17, Indels: 17
0.73 0.13 0.13
Matches are distributed among these distances:
41 1 0.01
42 6 0.06
43 9 0.10
44 67 0.71
45 10 0.11
46 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (43 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGATCTTGACTTCGATC
Found at i:97422976 original size:19 final size:19
Alignment explanation
Indices: 97422934--97422980 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
97422924 AGTGAAAGTT
*
97422934 TAATGCAAATGTTTCAATG
1 TAATGCAAATGTTGCAATG
*
97422953 TAATGCAAATGTATGGAATG
1 TAATGCAAATGT-TGCAATG
97422973 -AATGCAAA
1 TAATGCAAA
97422981 AGAAAGGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.30
Consensus pattern (19 bp):
TAATGCAAATGTTGCAATG
Found at i:97425797 original size:3 final size:3
Alignment explanation
Indices: 97425784--97425861 Score: 60
Period size: 3 Copynumber: 26.3 Consensus size: 3
97425774 GAGGGCATAT
97425784 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
*
97425828 ATA ATA AT- ATA ATA AT- ATA AAA ATA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
97425862 AAAAATAAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
2 11 0.18
3 42 0.68
4 7 0.11
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:97425797 original size:8 final size:8
Alignment explanation
Indices: 97425780--97425861 Score: 54
Period size: 8 Copynumber: 10.8 Consensus size: 8
97425770 TGGAGAGGGC
97425780 ATAT-ATA
1 ATATAATA
97425787 ATATAATA
1 ATATAATA
97425795 ATA-ATATA
1 ATATA-ATA
97425803 A-ATAATA
1 ATATAATA
97425810 ATAT-ATA
1 ATATAATA
*
97425817 CATGA-GA-A
1 -AT-ATAATA
97425825 ATAATAATA
1 AT-ATAATA
97425834 ATATAATA
1 ATATAATA
97425842 ATATAA-A
1 ATATAATA
97425849 A-ATAATA
1 ATATAATA
*
97425856 AAATAA
1 ATATAA
97425862 AAAAATAAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 21
0.73 0.02 0.25
Matches are distributed among these distances:
6 4 0.06
7 20 0.32
8 33 0.53
9 5 0.08
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (8 bp):
ATATAATA
Found at i:97425814 original size:30 final size:29
Alignment explanation
Indices: 97425780--97425869 Score: 94
Period size: 32 Copynumber: 3.0 Consensus size: 29
97425770 TGGAGAGGGC
97425780 ATATATAATATAATAATAATATAAATAATA
1 ATATATAATATAATAATAATA-AAATAATA
* *
97425810 ATATATACATGAGAAATAATAATAATATAATA
1 ATATATA-AT-A-TAATAATAATAAAATAATA
* *
97425842 ATATA-AAAATAATAA-AATAAAAAAATA
1 ATATATAATATAATAATAATAAAATAATA
97425869 A
1 A
97425870 AACAAAGCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
27 11 0.22
28 5 0.10
29 1 0.02
30 8 0.16
31 3 0.06
32 13 0.25
33 10 0.20
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (29 bp):
ATATATAATATAATAATAATAAAATAATA
Found at i:97425862 original size:14 final size:14
Alignment explanation
Indices: 97425836--97425871 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
97425826 TAATAATAAT
*
97425836 ATAATAATATAAAA
1 ATAATAAAATAAAA
97425850 ATAATAAAATAAAA
1 ATAATAAAATAAAA
97425864 A-AATAAAA
1 ATAATAAAA
97425872 CAAAGCTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
ATAATAAAATAAAA
Found at i:97429807 original size:6 final size:6
Alignment explanation
Indices: 97429798--97429828 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
97429788 AAAGAGTCCA
*
97429798 ACCATC ACCACC ACCATC ACCATC ACCATC A
1 ACCATC ACCATC ACCATC ACCATC ACCATC A
97429829 TCTTCCTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.35, C:0.52, G:0.00, T:0.13
Consensus pattern (6 bp):
ACCATC
Found at i:97431189 original size:16 final size:16
Alignment explanation
Indices: 97431165--97431198 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97431155 ATATAAAAAC
*
97431165 TAAATTAAATTATAAA
1 TAAAATAAATTATAAA
*
97431181 TAAAATAAATTTTAAA
1 TAAAATAAATTATAAA
97431197 TA
1 TA
97431199 CATAAATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAAATAAATTATAAA
Found at i:97432191 original size:16 final size:16
Alignment explanation
Indices: 97432170--97432200 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97432160 AAAATATTTT
*
97432170 TTATAAAGTTTATATA
1 TTATAAAATTTATATA
97432186 TTATAAAATTTATAT
1 TTATAAAATTTATAT
97432201 TAATTTCAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
TTATAAAATTTATATA
Found at i:97435161 original size:87 final size:87
Alignment explanation
Indices: 97435013--97435172 Score: 250
Period size: 87 Copynumber: 1.8 Consensus size: 87
97435003 AATAGCATGT
* * *
97435013 TTATAAATCATTTGGATAACTAATTTTGACACTTGATTTGTATATGCATTGCTTTCGAATCATGT
1 TTATAAATCATTTGGATAACTAATTATGACACTTGATTCGTATATGCATTGCTTTCAAATCATGT
97435078 TAGAACCATTGAGCTCTTTTGC
66 TAGAACCATTGAGCTCTTTTGC
* *
97435100 TTATAAATTATTTGGATAACTAAATTATG-TACTTGATTCGTATATGCATTGCTTTCAAATCATG
1 TTATAAATCATTTGGATAACT-AATTATGACACTTGATTCGTATATGCATTGCTTTCAAATCATG
*
97435164 TTAGCACCA
65 TTAGAACCA
97435173 CCAACTCTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
87 60 0.91
88 6 0.09
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (87 bp):
TTATAAATCATTTGGATAACTAATTATGACACTTGATTCGTATATGCATTGCTTTCAAATCATGT
TAGAACCATTGAGCTCTTTTGC
Found at i:97436309 original size:101 final size:101
Alignment explanation
Indices: 97436134--97436336 Score: 406
Period size: 101 Copynumber: 2.0 Consensus size: 101
97436124 AGAATGGTTT
97436134 GAACATACAACATGTGATAACATGAGGGACTCACAAAGAAATTTCATTTTATGGCTATAGCTATC
1 GAACATACAACATGTGATAACATGAGGGACTCACAAAGAAATTTCATTTTATGGCTATAGCTATC
97436199 ATCTTTAGGCTAATGTTTCTTAACAATCATTGGTGG
66 ATCTTTAGGCTAATGTTTCTTAACAATCATTGGTGG
97436235 GAACATACAACATGTGATAACATGAGGGACTCACAAAGAAATTTCATTTTATGGCTATAGCTATC
1 GAACATACAACATGTGATAACATGAGGGACTCACAAAGAAATTTCATTTTATGGCTATAGCTATC
97436300 ATCTTTAGGCTAATGTTTCTTAACAATCATTGGTGG
66 ATCTTTAGGCTAATGTTTCTTAACAATCATTGGTGG
97436336 G
1 G
97436337 TTTTCTTATT
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (101 bp):
GAACATACAACATGTGATAACATGAGGGACTCACAAAGAAATTTCATTTTATGGCTATAGCTATC
ATCTTTAGGCTAATGTTTCTTAACAATCATTGGTGG
Found at i:97439946 original size:6 final size:6
Alignment explanation
Indices: 97439935--97439968 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
97439925 CTCCATTCAG
* *
97439935 AGAAGT AGAAGT AGAAGT AGAACT AGAACT AGAA
1 AGAAGT AGAAGT AGAAGT AGAAGT AGAAGT AGAA
97439969 CGGTCAAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.53, C:0.06, G:0.26, T:0.15
Consensus pattern (6 bp):
AGAAGT
Found at i:97441920 original size:18 final size:18
Alignment explanation
Indices: 97441879--97441920 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
97441869 AAGGGTTAAG
97441879 TATTAATTTACAATAATTA
1 TATT-ATTTACAATAATTA
*
97441898 CATTATTTA-AATAAATTA
1 TATTATTTACAAT-AATTA
97441916 TATTA
1 TATTA
97441921 AAATTTCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 3 0.15
18 14 0.70
19 3 0.15
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (18 bp):
TATTATTTACAATAATTA
Found at i:97442695 original size:21 final size:21
Alignment explanation
Indices: 97442671--97442714 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
97442661 TAAAAACCCA
97442671 AAATGATCCAAACCATTAAAC
1 AAATGATCCAAACCATTAAAC
97442692 AAATGATCCAAACCATTAAAC
1 AAATGATCCAAACCATTAAAC
97442713 AA
1 AA
97442715 TCTCCCAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.55, C:0.23, G:0.05, T:0.18
Consensus pattern (21 bp):
AAATGATCCAAACCATTAAAC
Found at i:97443295 original size:2 final size:2
Alignment explanation
Indices: 97443290--97443322 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
97443280 GTGTATATCT
97443290 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
97443323 CCTCTTCTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:97452946 original size:33 final size:33
Alignment explanation
Indices: 97452904--97452970 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
97452894 TTGAATCTGT
97452904 TTGTGAATCAATTCACTTGTGACGTTCATAGTG
1 TTGTGAATCAATTCACTTGTGACGTTCATAGTG
97452937 TTGTGAATCAATTCACTTGTGACGTTCATAGTG
1 TTGTGAATCAATTCACTTGTGACGTTCATAGTG
97452970 T
1 T
97452971 GATTTACCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (33 bp):
TTGTGAATCAATTCACTTGTGACGTTCATAGTG
Found at i:97459781 original size:49 final size:47
Alignment explanation
Indices: 97459719--97459889 Score: 141
Period size: 47 Copynumber: 3.6 Consensus size: 47
97459709 AGTTAATGTA
* * * *
97459719 TTGGCTTCAGGCCATGATAT-GGCACTTCGTGTGCAAATAATACCTTGAT
1 TTGGCTACGGGCCATGATATAGGCACTTCGAGAG-AAAT--TACCTTGAT
* * * *
97459768 TTGGCTACGGGCCATGATATAGGTATTTTGAGAGAAGTTACCTTGAT
1 TTGGCTACGGGCCATGATATAGGCACTTCGAGAGAAATTACCTTGAT
* * *
97459815 TTGGCTACGGGCCATGGTATAGGTACTCCG-GA-ATAAGTTACCTTGAT
1 TTGGCTACGGGCCATGATATAGGCACTTCGAGAGA-AA-TTACCTTGAT
* * * *
97459862 TTGGCTACAGGTCATGGTATAGGTACTT
1 TTGGCTACGGGCCATGATATAGGCACTT
97459890 ATCGATTGTG
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 1 0.01
46 3 0.03
47 70 0.68
49 21 0.20
50 8 0.08
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (47 bp):
TTGGCTACGGGCCATGATATAGGCACTTCGAGAGAAATTACCTTGAT
Found at i:97459822 original size:47 final size:47
Alignment explanation
Indices: 97459759--97459888 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
97459749 GTGCAAATAA
* ***
97459759 TACCTTGATTTGGCTACGGGCCATGATATAGGTA-TTTTGAGAGAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGA-AGAAGT
*
97459806 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGAATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGAAGAAGT
* *
97459853 TACCTTGATTTGGCTACAGGTCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
97459889 TATCGATTGT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
47 72 0.96
48 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGAAGAAGT
Found at i:97472317 original size:2 final size:2
Alignment explanation
Indices: 97472310--97472342 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
97472300 TTTAACGCAA
97472310 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
97472343 AAATAAGATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:97480041 original size:18 final size:17
Alignment explanation
Indices: 97480018--97480051 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
97480008 TTGTACCCAC
97480018 AAATTTTGAGTCGAAAGA
1 AAATTTTGAGTC-AAAGA
97480036 AAATTTTGAGTCAAAG
1 AAATTTTGAGTCAAAG
97480052 TTATTGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.44, C:0.06, G:0.21, T:0.29
Consensus pattern (17 bp):
AAATTTTGAGTCAAAGA
Found at i:97485186 original size:24 final size:23
Alignment explanation
Indices: 97485159--97485203 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
97485149 GCAAAACACT
* *
97485159 GACAGCTGCACAAGAAAATTATAC
1 GACAACTG-ACAAAAAAATTATAC
*
97485183 GACAACTGAGAAAAAAATTAT
1 GACAACTGACAAAAAAATTAT
97485204 TGGTTGTGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.18
Consensus pattern (23 bp):
GACAACTGACAAAAAAATTATAC
Found at i:97486903 original size:22 final size:22
Alignment explanation
Indices: 97486875--97486917 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
97486865 CCTCAATAAC
97486875 TTAGTTTATTTTTCCTTTTTTT
1 TTAGTTTATTTTTCCTTTTTTT
*
97486897 TTAGTTTGTTTTTCCTTTTTT
1 TTAGTTTATTTTTCCTTTTTT
97486918 GTTTTATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.07, C:0.09, G:0.07, T:0.77
Consensus pattern (22 bp):
TTAGTTTATTTTTCCTTTTTTT
Found at i:97493619 original size:46 final size:46
Alignment explanation
Indices: 97493564--97493656 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
97493554 GGAAACAGGG
*
97493564 CATACATACTGACTTGGGTTACACGGCCAACCACACACCCGTGTGT
1 CATACATACTGACTTGGGTTACACAGCCAACCACACACCCGTGTGT
97493610 CATACATACTGACTTGGGTTACACAGCCAACCACACACCCGTGTGT
1 CATACATACTGACTTGGGTTACACAGCCAACCACACACCCGTGTGT
97493656 C
1 C
97493657 TAACCCGTGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (46 bp):
CATACATACTGACTTGGGTTACACAGCCAACCACACACCCGTGTGT
Found at i:97500511 original size:19 final size:19
Alignment explanation
Indices: 97500487--97500527 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
97500477 CATGAACAAC
97500487 AGGGATTTGTTTGAGGAAA
1 AGGGATTTGTTTGAGGAAA
97500506 AGGGATTTGTTTGAGGAAA
1 AGGGATTTGTTTGAGGAAA
97500525 AGG
1 AGG
97500528 TGGAGGTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.39, T:0.29
Consensus pattern (19 bp):
AGGGATTTGTTTGAGGAAA
Found at i:97501038 original size:19 final size:19
Alignment explanation
Indices: 97501002--97501040 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
97500992 TCTTCATCAT
* *
97501002 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
97501021 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
97501040 A
1 A
97501041 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:97501545 original size:55 final size:55
Alignment explanation
Indices: 97501486--97501594 Score: 132
Period size: 55 Copynumber: 2.0 Consensus size: 55
97501476 GCTGCCAGGT
* * *
97501486 ACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCACCAGA
1 ACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCACCAGA
* * *
97501541 ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCACCAG
1 ACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCACCAG
97501595 GATGCTTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 1 0.02
55 29 0.63
56 16 0.35
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (55 bp):
ACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCACCAGA
Found at i:97501591 original size:28 final size:27
Alignment explanation
Indices: 97501505--97501594 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
97501495 GTGACAGAGT
*
97501505 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
97501534 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
97501561 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
97501589 CACCAG
1 CACCAG
97501595 GATGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:97502824 original size:12 final size:13
Alignment explanation
Indices: 97502805--97502837 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
97502795 GGGTTCGGCT
97502805 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
97502818 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
97502830 ATGGAGAA
1 ATGGAGAA
97502838 AAAGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:97509304 original size:55 final size:56
Alignment explanation
Indices: 97509239--97509343 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
97509229 AGCATGGCTG
* * *
97509239 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCAGTGCCA
* * *
97509295 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCA
97509344 TAGCCACTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 21 0.50
56 21 0.50
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCAGTGCCA
Found at i:97509321 original size:27 final size:28
Alignment explanation
Indices: 97509264--97509333 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
97509254 GTGACAGAGT
** *
97509264 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTACGTGGCAGGGC
97509293 CACCAGAACAGATA-TACGTGGCAGGGC
1 CACCAGAACAGATATTACGTGGCAGGGC
97509320 CACCAGAACAGATA
1 CACCAGAACAGATA
97509334 ATTTGTGGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 24 0.63
28 7 0.18
29 7 0.18
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (28 bp):
CACCAGAACAGATATTACGTGGCAGGGC
Found at i:97509350 original size:28 final size:27
Alignment explanation
Indices: 97509264--97509350 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
97509254 GTGACAGAGT
*
97509264 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
97509293 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
97509320 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
97509348 CAC
1 CAC
97509351 TAGGACGCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
27 23 0.47
28 19 0.39
29 7 0.14
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:97509506 original size:28 final size:28
Alignment explanation
Indices: 97509459--97509523 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
97509449 AAATTAACCC
*
97509459 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
97509487 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
97509515 TAGGGGTAT
1 TAGGGGTAT
97509524 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:97510607 original size:12 final size:13
Alignment explanation
Indices: 97510588--97510620 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
97510578 GGGTTCGGCT
97510588 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
97510601 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
97510613 ATGGAGAA
1 ATGGAGAA
97510621 AAAGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:97511926 original size:12 final size:12
Alignment explanation
Indices: 97511909--97511936 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
97511899 CACACACGTT
97511909 CGTGTGCTAGGC
1 CGTGTGCTAGGC
97511921 CGTGTGCTAGGC
1 CGTGTGCTAGGC
97511933 CGTG
1 CGTG
97511937 CCAATCCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.25, G:0.43, T:0.25
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:97513145 original size:17 final size:18
Alignment explanation
Indices: 97513125--97513161 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
97513115 TTTCTTTATG
97513125 TTTTGT-TGTTTTCCTAT
1 TTTTGTATGTTTTCCTAT
97513142 TTTTGTGATGTTTTCCTAT
1 TTTTGT-ATGTTTTCCTAT
97513161 T
1 T
97513162 ACATTATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.08, C:0.11, G:0.14, T:0.68
Consensus pattern (18 bp):
TTTTGTATGTTTTCCTAT
Found at i:97516143 original size:44 final size:44
Alignment explanation
Indices: 97516079--97516187 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 44
97516069 TCAATTTCGA
* *
97516079 TTTTTCAACATCGACGTGGTACAACAGAGAATTAATCCTTA-TTT
1 TTTTTCAACATCGACATGGTACAACAGAG-ATCAATCCTTATTTT
* ** *
97516123 TTTTTCAACATCAACATGGTACAATGGAGATCAATTCTTATTTT
1 TTTTTCAACATCGACATGGTACAACAGAGATCAATCCTTATTTT
*
97516167 TTTTTTAACATCGACATGGTA
1 TTTTTCAACATCGACATGGTA
97516188 AGGTAGAGAC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 9 0.16
44 47 0.84
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (44 bp):
TTTTTCAACATCGACATGGTACAACAGAGATCAATCCTTATTTT
Found at i:97516478 original size:70 final size:70
Alignment explanation
Indices: 97516288--97516486 Score: 224
Period size: 70 Copynumber: 2.8 Consensus size: 70
97516278 AAAATGGCGA
* * *
97516288 GAAGAGCTTTTGCAACTTCAACATGGCTAGAGGAGGGCCCATTCCGAACTTTGCAACATCAACAT
1 GAAGAACTTTTGCAACTTCAACATGACTAGAGGAGGGCCCATTCTGAACTTTGCAACATCAACAT
97516353 GGAAG
66 GGAAG
* * ** * * *
97516358 AAAGAACTTTTGCAACTTCAACATGA-TGCGAGGAGAACCTA-TCTCGAACTTTGTAACTTCAAC
1 GAAGAACTTTTGCAACTTCAACATGACT-AGAGGAGGGCCCATTCT-GAACTTTGCAACATCAAC
97516421 AT-GAAGG
64 ATGGAA-G
* * * *
97516428 GAAGAACTTTTGCAACTTCAACGTGACTAGAGGAGGGCCGATTCTAAACTTCGCAACAT
1 GAAGAACTTTTGCAACTTCAACATGACTAGAGGAGGGCCCATTCTGAACTTTGCAACAT
97516487 TAAAACAGTT
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
69 6 0.06
70 94 0.90
71 4 0.04
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (70 bp):
GAAGAACTTTTGCAACTTCAACATGACTAGAGGAGGGCCCATTCTGAACTTTGCAACATCAACAT
GGAAG
Found at i:97531820 original size:25 final size:25
Alignment explanation
Indices: 97531772--97531820 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
97531762 CATATCACAG
*
97531772 CTCTTTATGAGCATTCTGACATAGA
1 CTCTTTATGAGCATTCTGAAATAGA
*
97531797 CTCTTTGTGAGC-TTCTTGAAATAG
1 CTCTTTATGAGCATTC-TGAAATAG
97531821 CTCGCTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (25 bp):
CTCTTTATGAGCATTCTGAAATAGA
Found at i:97534469 original size:10 final size:10
Alignment explanation
Indices: 97534451--97534496 Score: 56
Period size: 10 Copynumber: 4.3 Consensus size: 10
97534441 GTTATCCTTC
*
97534451 TTTTCTTTCT
1 TTTTTTTTCT
97534461 TTTTTTTTCT
1 TTTTTTTTCT
97534471 TTTTTTTTCTT
1 TTTTTTTTC-T
97534482 TCTTCTTTTTCT
1 T-TT-TTTTTCT
97534494 TTT
1 TTT
97534497 AATTTGCACG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
10 18 0.56
11 4 0.12
12 4 0.12
13 6 0.19
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:97534470 original size:14 final size:14
Alignment explanation
Indices: 97534451--97534496 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
97534441 GTTATCCTTC
97534451 TTTTCTTTCTTTTT
1 TTTTCTTTCTTTTT
97534465 TTTTCTTT-TTTTT
1 TTTTCTTTCTTTTT
97534478 TCTTTC-TTCTTTTT
1 T-TTTCTTTCTTTTT
97534492 CTTTT
1 -TTTT
97534497 AATTTGCACG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 8 0.28
14 20 0.69
15 1 0.03
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTCTTTCTTTTT
Found at i:97534480 original size:24 final size:23
Alignment explanation
Indices: 97534451--97534496 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
97534441 GTTATCCTTC
*
97534451 TTTTCTTTCTTTTTTTTTCTTTTT
1 TTTTCTTTC-TTCTTTTTCTTTTT
97534475 TTTTCTTTCTTCTTTTTCTTTT
1 TTTTCTTTCTTCTTTTTCTTTT
97534497 AATTTGCACG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (23 bp):
TTTTCTTTCTTCTTTTTCTTTTT
Found at i:97540987 original size:7 final size:7
Alignment explanation
Indices: 97540975--97541004 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
97540965 AATCAGTTTA
97540975 GAATCTT
1 GAATCTT
97540982 GAATCTT
1 GAATCTT
97540989 GAATCTT
1 GAATCTT
97540996 GAATCTT
1 GAATCTT
97541003 GA
1 GA
97541005 TAGAGAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (7 bp):
GAATCTT
Found at i:97544749 original size:9 final size:9
Alignment explanation
Indices: 97544735--97544829 Score: 118
Period size: 9 Copynumber: 10.6 Consensus size: 9
97544725 ATAAGTATAA
97544735 AATTAACCG
1 AATTAACCG
*
97544744 AATTAACCT
1 AATTAACCG
*
97544753 AATTAATCG
1 AATTAACCG
*
97544762 AATTAACAG
1 AATTAACCG
*
97544771 AATTACCCG
1 AATTAACCG
*
97544780 AATTACCCG
1 AATTAACCG
* *
97544789 AATTACCCA
1 AATTAACCG
97544798 AATTAACCG
1 AATTAACCG
97544807 AATTAACCG
1 AATTAACCG
*
97544816 AATTAACCA
1 AATTAACCG
97544825 AATTA
1 AATTA
97544830 TTTGTATAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 75 1.00
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:97544864 original size:5 final size:6
Alignment explanation
Indices: 97544849--97544918 Score: 79
Period size: 6 Copynumber: 11.2 Consensus size: 6
97544839 AATTATATGT
*
97544849 TTTTTA TTTTTA TTTTTA GTTTTAAA TTTTTA TTTTTA TTTTTA TTTATTAA
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTTTTA TTT-TT-A
*
97544901 TTTTT- TTTTAA TTTTTA T
1 TTTTTA TTTTTA TTTTTA T
97544919 GATTGGGTTG
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
5 4 0.07
6 34 0.62
7 12 0.22
8 5 0.09
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:97544885 original size:26 final size:26
Alignment explanation
Indices: 97544849--97544918 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
97544839 AATTATATGT
97544849 TTTTTATTTTTATTTTTAGTTT-TAAA
1 TTTTTATTTTTATTTTTA-TTTATAAA
*
97544875 TTTTTATTTTTATTTTTATTTATTAA
1 TTTTTATTTTTATTTTTATTTATAAA
*
97544901 TTTTT-TTTTAATTTTTAT
1 TTTTTATTTTTATTTTTAT
97544919 GATTGGGTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
25 15 0.37
26 26 0.63
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.77
Consensus pattern (26 bp):
TTTTTATTTTTATTTTTATTTATAAA
Found at i:97544903 original size:20 final size:18
Alignment explanation
Indices: 97544849--97544918 Score: 79
Period size: 20 Copynumber: 3.7 Consensus size: 18
97544839 AATTATATGT
*
97544849 TTTTTATTTTTATTTTTA
1 TTTTAATTTTTATTTTTA
97544867 GTTTTAAATTTTTATTTTTA
1 -TTTT-AATTTTTATTTTTA
*
97544887 TTTTTATTTATTAATTTTT-
1 TTTTAATTT-TT-ATTTTTA
97544906 TTTTAATTTTTAT
1 TTTTAATTTTTAT
97544919 GATTGGGTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
17 2 0.04
18 6 0.13
19 18 0.40
20 19 0.42
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.77
Consensus pattern (18 bp):
TTTTAATTTTTATTTTTA
Found at i:97545619 original size:17 final size:17
Alignment explanation
Indices: 97545597--97545631 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
97545587 AGTACCGAGT
97545597 CAGTTTGGATTGCGCAA
1 CAGTTTGGATTGCGCAA
97545614 CAGTTTGGATTGCGCAA
1 CAGTTTGGATTGCGCAA
97545631 C
1 C
97545632 TAAGATGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (17 bp):
CAGTTTGGATTGCGCAA
Found at i:97553483 original size:14 final size:14
Alignment explanation
Indices: 97553464--97553493 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
97553454 TTTCGCTTTA
97553464 TTACTTTATTTGCG
1 TTACTTTATTTGCG
97553478 TTACTTTATTTGCG
1 TTACTTTATTTGCG
97553492 TT
1 TT
97553494 TGATGTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.60
Consensus pattern (14 bp):
TTACTTTATTTGCG
Found at i:97555629 original size:20 final size:20
Alignment explanation
Indices: 97555604--97555649 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
97555594 AAAAAGTTCA
97555604 GTTAATACTAG-TTCAATTCG
1 GTTAATACTAGTTTC-ATTCG
97555624 GTTAATACTAGTTTCATTCG
1 GTTAATACTAGTTTCATTCG
97555644 GTTAAT
1 GTTAAT
97555650 CATTTGAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (20 bp):
GTTAATACTAGTTTCATTCG
Found at i:97575071 original size:60 final size:60
Alignment explanation
Indices: 97574981--97575195 Score: 313
Period size: 60 Copynumber: 3.6 Consensus size: 60
97574971 AAAATCCAAG
* * *
97574981 ATAGTTGGGTGACAAAAAAACAAAATTGACTAATAGTTCAGTGACCATTTTGTAACTATTC
1 ATAGTTGGGTGACCAAAAAA-GAAATTGACTAATAGTTGAGTGACCATTTTGTAACTATTC
* * *
97575042 ATAGCTGGGTGACCAAAAAAGAAATTGACTAATAGTTGGGTGACTATTTTGTAACTATTC
1 ATAGTTGGGTGACCAAAAAAGAAATTGACTAATAGTTGAGTGACCATTTTGTAACTATTC
* * *
97575102 ATAATTGGGTGATCAAAAAAGAAATTGACTAATAGTTGAGTGATCATTTTGTAACTATTC
1 ATAGTTGGGTGACCAAAAAAGAAATTGACTAATAGTTGAGTGACCATTTTGTAACTATTC
* * *
97575162 ATAGTTGAGTGATCAAAAAAGAAATTTACTAATA
1 ATAGTTGGGTGACCAAAAAAGAAATTGACTAATA
97575196 TTTAAGCGAC
Statistics
Matches: 139, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
60 121 0.87
61 18 0.13
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.32
Consensus pattern (60 bp):
ATAGTTGGGTGACCAAAAAAGAAATTGACTAATAGTTGAGTGACCATTTTGTAACTATTC
Found at i:97581825 original size:19 final size:19
Alignment explanation
Indices: 97581801--97581838 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
97581791 TAATTTAGTG
97581801 TTTAATAAAATTAATTAAC
1 TTTAATAAAATTAATTAAC
97581820 TTTAATAAAATTAATTAAC
1 TTTAATAAAATTAATTAAC
97581839 ATGTTGAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
TTTAATAAAATTAATTAAC
Found at i:97589276 original size:33 final size:33
Alignment explanation
Indices: 97589234--97589306 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
97589224 CAATCCCTCT
* *
97589234 AACACACCAATGCTTATAAGAGTTAAT-CAGACC
1 AACACACCAATGCTCATAAGAGCTAATCCA-ACC
97589267 AACACACCAATGCTCATAAGAGCTAATCCAACC
1 AACACACCAATGCTCATAAGAGCTAATCCAACC
97589300 AACACAC
1 AACACAC
97589307 TAAACAGAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
33 35 0.95
34 2 0.05
ACGTcount: A:0.44, C:0.30, G:0.10, T:0.16
Consensus pattern (33 bp):
AACACACCAATGCTCATAAGAGCTAATCCAACC
Found at i:97591869 original size:13 final size:13
Alignment explanation
Indices: 97591853--97591885 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
97591843 CAATGCTTTT
97591853 GAAAAGTGCTATG
1 GAAAAGTGCTATG
97591866 GAAAAGTGCTATG
1 GAAAAGTGCTATG
97591879 GAAAAGT
1 GAAAAGT
97591886 ACTTTTGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.42, C:0.06, G:0.30, T:0.21
Consensus pattern (13 bp):
GAAAAGTGCTATG
Found at i:97591875 original size:26 final size:26
Alignment explanation
Indices: 97591844--97591911 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
97591834 CTAGTTTGAC
*
97591844 AATGCTTTTGAAAAGTGCTATGGA-A
1 AATGCTTTTGAAAAGTACTATGGAGA
* * * *
97591869 AAGTGCTATGGAAAAGTACTTTTGAGA
1 AA-TGCTTTTGAAAAGTACTATGGAGA
*
97591896 AATGTTTTTGAAAAGT
1 AATGCTTTTGAAAAGT
97591912 TTGGTTTAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
25 2 0.06
26 28 0.85
27 3 0.09
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.34
Consensus pattern (26 bp):
AATGCTTTTGAAAAGTACTATGGAGA
Found at i:97596800 original size:21 final size:18
Alignment explanation
Indices: 97596752--97596796 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
97596742 TTCAAGAAAT
97596752 ATAATAATTTAATTTTAA
1 ATAATAATTTAATTTTAA
97596770 ATAATAATTTAATTTTAA
1 ATAATAATTTAATTTTAA
*
97596788 ACAATAATT
1 ATAATAATT
97596797 ATTTTAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
ATAATAATTTAATTTTAA
Found at i:97598615 original size:26 final size:26
Alignment explanation
Indices: 97598586--97598638 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
97598576 AGAACAAGAA
*
97598586 TTAAAGGATGATTGAAAAAAATTCTT
1 TTAAAGGATGATCGAAAAAAATTCTT
97598612 TTAAAGGATGATCGAAAAAAATTCTT
1 TTAAAGGATGATCGAAAAAAATTCTT
97598638 T
1 T
97598639 CTTTTGGGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (26 bp):
TTAAAGGATGATCGAAAAAAATTCTT
Found at i:97602275 original size:44 final size:45
Alignment explanation
Indices: 97602180--97602294 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 45
97602170 ACAGGACAGA
*
97602180 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGATTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGATTTGGAG
* *
97602226 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCA-TTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGG-ATTTGGAG
* **
97602270 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
97602295 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
44 34 0.56
45 1 0.02
46 26 0.43
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGATTTGGAG
Found at i:97603903 original size:21 final size:21
Alignment explanation
Indices: 97603877--97603917 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97603867 ATCTGCTCAA
* *
97603877 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
97603898 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
97603918 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:97609027 original size:22 final size:22
Alignment explanation
Indices: 97608991--97609032 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
97608981 CACAAGAGTT
* *
97608991 ATATAATATCTAAATAATAATA
1 ATATAATAACGAAATAATAATA
*
97609013 ATATAATAACGAAATTATAA
1 ATATAATAACGAAATAATAA
97609033 CAAAATAACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (22 bp):
ATATAATAACGAAATAATAATA
Found at i:97616523 original size:7 final size:7
Alignment explanation
Indices: 97616511--97616544 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
97616501 AGTCTTGATT
97616511 ATTAAAA
1 ATTAAAA
97616518 ATTAAAA
1 ATTAAAA
*
97616525 TTTAAAA
1 ATTAAAA
97616532 ATTAAAA
1 ATTAAAA
97616539 A-TAAAA
1 ATTAAAA
97616545 TTATTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
ATTAAAA
Found at i:97616608 original size:20 final size:20
Alignment explanation
Indices: 97616567--97616612 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
97616557 TCATTTTTCA
**
97616567 ATAAAAATACATAAGATTTT
1 ATAAAAATACATAAGAAATT
97616587 ATAAAAATACATATA-AAATT
1 ATAAAAATACATA-AGAAATT
97616607 ATAAAA
1 ATAAAA
97616613 GAAATATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (20 bp):
ATAAAAATACATAAGAAATT
Found at i:97616718 original size:20 final size:20
Alignment explanation
Indices: 97616674--97616711 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97616664 ATTTATTTCT
*
97616674 TAAAATAAAAATTTTATAAA
1 TAAAATAAAAATCTTATAAA
*
97616694 TAAAATAATAATCTTATA
1 TAAAATAAAAATCTTATA
97616712 CGTAAAACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAATAAAAATCTTATAAA
Found at i:97617308 original size:22 final size:22
Alignment explanation
Indices: 97617282--97617329 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
97617272 AAAAATAAGT
97617282 ATGTATTTATTTATAATTTTGA
1 ATGTATTTATTTATAATTTTGA
*
97617304 ATGTATTTATTTATAATTTTGC
1 ATGTATTTATTTATAATTTTGA
97617326 ATGT
1 ATGT
97617330 GTTTTATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.58
Consensus pattern (22 bp):
ATGTATTTATTTATAATTTTGA
Found at i:97621371 original size:24 final size:24
Alignment explanation
Indices: 97621344--97621398 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
97621334 CAATTCTCAT
97621344 AATATAAAT-TTTAAAAAATTATAA
1 AATATAAATATTTAAAAAATT-TAA
* *
97621368 AATAT-ATTATTTAATAAATTTAA
1 AATATAAATATTTAAAAAATTTAA
*
97621391 AAAATAAA
1 AATATAAA
97621399 CAAGTAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AATATAAATATTTAAAAAATTTAA
Found at i:97623499 original size:112 final size:111
Alignment explanation
Indices: 97623333--97623614 Score: 460
Period size: 112 Copynumber: 2.5 Consensus size: 111
97623323 ATTGCTATAC
97623333 AAAATACGAGTTTTAAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA
1 AAAATACGAGTTTT--AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA
*
97623398 CAAAAAAAATTTCGAAA-TTTTTTTCAAAAATTTTTTTTTTTTGCTCTCTA
64 CAAAAAAAAATTC-AAATTTTTTTTC-AAAA-TTTTTTTTTTTGCTCTCTA
*
97623448 AAAATACGAGTTTT-AAAAAAAATTTTGGGTGCTGGCTTGTCAATGGCCGGCACCCAGTACAACA
1 AAAATACGAGTTTTAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACA
97623512 AAAAAAAATTCAAATTTTTTTTCAAAATTTTTTTTTTTGCTCTCTA
66 AAAAAAAATTCAAATTTTTTTTCAAAATTTTTTTTTTTGCTCTCTA
*
97623558 AAAATACTGAGTTTTAAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACC
1 AAAATAC-GAGTTTT-AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACC
97623615 AAATTTATGA
Statistics
Matches: 159, Mismatches: 4, Indels: 10
0.92 0.02 0.06
Matches are distributed among these distances:
110 26 0.16
111 14 0.09
112 67 0.42
113 38 0.24
115 14 0.09
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (111 bp):
AAAATACGAGTTTTAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACA
AAAAAAAATTCAAATTTTTTTTCAAAATTTTTTTTTTTGCTCTCTA
Found at i:97627511 original size:53 final size:54
Alignment explanation
Indices: 97627430--97627580 Score: 209
Period size: 53 Copynumber: 2.8 Consensus size: 54
97627420 CTTACACGGT
* *
97627430 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAGACTATGGTCTTATACGGAATCACATTA
*
97627485 TCACATTATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGACTATGGTCTTATACGGAATCACATTA
** *
97627538 TCACATTGCACCGATGCCATAGCCCA-ACTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGACTATGGTCTTATACGG
97627581 GCACACTTAC
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
TCACATTATACCGATGCCATAGCCCAGACTATGGTCTTATACGGAATCACATTA
Found at i:97629519 original size:109 final size:108
Alignment explanation
Indices: 97629121--97629515 Score: 584
Period size: 105 Copynumber: 3.7 Consensus size: 108
97629111 TATAAGGTTT
* * * * * *
97629121 GGTGCCGGCCAATGACAGGGCAGCACTCAAAATTTTTTTTTT-AAACTTGTATTTTTAGAGAGCA
1 GGTGCCGGCCATTGACAAGCCAGCACCCAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGAGCA
*
97629185 AAAAAAAAATTTGAAAAAAATTCAAATTTTTTTTGTTGTACTG
66 AAAAAAAAATTTGAAAAAAATTCGAATTTTTTTTGTTGTACTG
* * *
97629228 GGTGCCGGCCATTGACAGGCCACCACCC-AA--TTTTTTTTTAAAATTCGTATTTTTAGAGAGC-
1 GGTGCCGGCCATTGACAAGCCAGCACCCAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGAGCA
* *
97629289 AAAAAAAAATTTAAAAAAAATTTGAATTTTTTTTTGTTGTACTG
66 AAAAAAAAATTTGAAAAAAATTCGAA-TTTTTTTTGTTGTACTG
* *
97629333 GGTGCCGGCCATTGACAAGCCAGCACCAAAATATTTTTTTTTAAAACTCGTATTTTTAGAGAGCA
1 GGTGCCGGCCATTGACAAGCCAGCACCCAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGAGCA
97629398 AAAAAAAAATTTTGAAAAAAATTCGAATTTTTTTTGTTGTACTG
66 AAAAAAAAA-TTTGAAAAAAATTCGAATTTTTTTTGTTGTACTG
*
97629442 GGTGCCGGCCATTGACAAGCCAGCACCCAAATTTTTTTTTTTTTAAAACTCATATTTTTAGAGAG
1 GGTGCCGGCCATTGACAAGCCAGCACCCAAA--TTTTTTTTTTTAAAACTCGTATTTTTAGAGAG
97629507 CAAAAAAAA
64 CAAAAAAAA
97629516 TTTTTTTTGT
Statistics
Matches: 261, Mismatches: 18, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
104 32 0.12
105 61 0.23
106 4 0.02
107 24 0.09
108 30 0.11
109 56 0.21
110 15 0.06
111 39 0.15
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (108 bp):
GGTGCCGGCCATTGACAAGCCAGCACCCAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGAGCA
AAAAAAAAATTTGAAAAAAATTCGAATTTTTTTTGTTGTACTG
Found at i:97629536 original size:91 final size:89
Alignment explanation
Indices: 97629423--97629588 Score: 271
Period size: 91 Copynumber: 1.8 Consensus size: 89
97629413 AAAAAATTCG
* *
97629423 AATTTTTTTTGTTGTACTGGGTGCCGGCCATTGACA-AGCCAGCACCCAAATTTTTTTTTTTTTA
1 AATTTTTTTTGTTATACTGGGTGCCGGCCATTG-CAGA-CCAGCACCCAAA-ATTTTTTTTTTTA
97629487 AAACTCATATTTTTAGAGAGCAAAAAA
63 AAACTCATATTTTTAGAGAGCAAAAAA
97629514 AATTTTTTTTGTTATACTGGGTGCCGGCCATTGCAGACCAGCACCCAAAATTTTTTTTTTTAAAA
1 AATTTTTTTTGTTATACTGGGTGCCGGCCATTGCAGACCAGCACCCAAAATTTTTTTTTTTAAAA
*
97629579 CTCGTATTTT
66 CTCATATTTT
97629589 GTATACCAAT
Statistics
Matches: 71, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
89 24 0.34
90 14 0.20
91 33 0.46
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (89 bp):
AATTTTTTTTGTTATACTGGGTGCCGGCCATTGCAGACCAGCACCCAAAATTTTTTTTTTTAAAA
CTCATATTTTTAGAGAGCAAAAAA
Found at i:97634961 original size:6 final size:6
Alignment explanation
Indices: 97634950--97634979 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
97634940 GTTTTATCCT
97634950 ATTGTC ATTGTC ATTGTC ATTGTC ATTGTC
1 ATTGTC ATTGTC ATTGTC ATTGTC ATTGTC
97634980 TCATTGTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (6 bp):
ATTGTC
Found at i:97636274 original size:21 final size:21
Alignment explanation
Indices: 97636230--97636274 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
97636220 GTATTGGTCT
* *
97636230 AAAACATATTTAACTAGTAGA
1 AAAACATATTGAAATAGTAGA
97636251 AAAACCATATTGAAATAGTA-A
1 AAAA-CATATTGAAATAGTAGA
97636272 AAA
1 AAA
97636275 CGAATGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.24
Consensus pattern (21 bp):
AAAACATATTGAAATAGTAGA
Found at i:97637780 original size:19 final size:19
Alignment explanation
Indices: 97637756--97637796 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
97637746 TTGATTAAAC
**
97637756 TAAATTTTTAATTTTTTTT
1 TAAATTTTTAATAGTTTTT
97637775 TAAATTTTTAATAGTTTTT
1 TAAATTTTTAATAGTTTTT
97637794 TAA
1 TAA
97637797 TCAAATTAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TAAATTTTTAATAGTTTTT
Found at i:97638325 original size:32 final size:32
Alignment explanation
Indices: 97638257--97638325 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 32
97638247 AAAAAAATTA
* * *
97638257 TAGTG-CATTTCCTATTTTGGTTAGTCTAAAT
1 TAGTGTCATTTCCTATTTTGGTCACTCAAAAT
*
97638288 AAGTGTCATTT-CTATTTTGGTCACTCCAAAAT
1 TAGTGTCATTTCCTATTTTGGTCACT-CAAAAT
97638320 TAGTGT
1 TAGTGT
97638326 AAATGGCTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
31 16 0.52
32 15 0.48
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (32 bp):
TAGTGTCATTTCCTATTTTGGTCACTCAAAAT
Found at i:97640079 original size:10 final size:9
Alignment explanation
Indices: 97640021--97640071 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 9
97640011 GCTGATGTAC
97640021 TTTAATTAA
1 TTTAATTAA
97640030 CTTATAATTAA
1 -TT-TAATTAA
97640041 TCTTAATTAA
1 T-TTAATTAA
97640051 TTTAA-TAA
1 TTTAATTAA
97640059 CCTTTAATTAA
1 --TTTAATTAA
97640070 TT
1 TT
97640072 AAGTTTAAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
8 3 0.08
9 6 0.17
10 16 0.44
11 11 0.31
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (9 bp):
TTTAATTAA
Found at i:97645337 original size:18 final size:19
Alignment explanation
Indices: 97645303--97645374 Score: 119
Period size: 19 Copynumber: 3.8 Consensus size: 19
97645293 TCATATCTTT
*
97645303 TAAGATTGTATATCATATC
1 TAAGATTGCATATCATATC
97645322 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
*
97645340 TAAGATTGCATATCACATC
1 TAAGATTGCATATCATATC
97645359 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
97645375 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
18 18 0.37
19 31 0.63
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:97645353 original size:37 final size:38
Alignment explanation
Indices: 97645303--97645374 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 38
97645293 TCATATCTTT
* *
97645303 TAAGATTGTATATCATATCTAAGATTGCA-ATCATATC
1 TAAGATTGCATATCACATCTAAGATTGCATATCATATC
97645340 TAAGATTGCATATCACATCTAAGATTGCATATCAT
1 TAAGATTGCATATCACATCTAAGATTGCATATCAT
97645375 TGAAGATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
37 27 0.84
38 5 0.16
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (38 bp):
TAAGATTGCATATCACATCTAAGATTGCATATCATATC
Found at i:97646195 original size:207 final size:207
Alignment explanation
Indices: 97645738--97646658 Score: 1578
Period size: 207 Copynumber: 4.5 Consensus size: 207
97645728 CAAATTGCTT
* * * *
97645738 CTTCAATTTGTTCACTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * *
97645803 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** * *
97645868 GGATC-TGCTTCAGTTTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
97645932 GGAGACGCAAAA
196 GGAGACGCCAAA
*
97645944 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
97646009 GTGAAAGCCAAAAT-AGCTATGTCTT-GAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATC
66 GTGAAAGCC-AAATCAGCTATGTCTTCG-ATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATC
*
97646072 TTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAAT
129 TTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAAT
97646137 ATGGAGACGCCAAA
194 ATGGAGACGCCAAA
* *
97646151 CTTCGATTCGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
97646216 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
97646281 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
97646346 GGAGACGCCAAA
196 GGAGACGCCAAA
* *
97646358 CTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
97646423 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
97646488 GGATCTTACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
97646553 GGAGACGCCAAA
196 GGAGACGCCAAA
* * * *
97646565 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
97646630 GTGAAAGCCAAATCAGCTATGTCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
97646659 CTGCTCTCCA
Statistics
Matches: 683, Mismatches: 27, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
205 1 0.00
206 126 0.18
207 555 0.81
208 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:97647110 original size:167 final size:166
Alignment explanation
Indices: 97646786--97647236 Score: 708
Period size: 167 Copynumber: 2.7 Consensus size: 166
97646776 GCTATACTTT
*
97646786 AACCTGTTACCCTACTACTTAAAGGG-TTAAGGCGCA-TCTTCGATCTGCTCCACTACTGCTTAG
1 AACCTGTTACCCTACTGCTT-AAGGGATTAAGGCG-AGTCTTCGATCTGCTCCACTACTGCTTAG
* * * *
97646849 GGAGATAAGATCTGCAATTTTGACCTGTTACCCTACTGCTTAAGGGATTAAGACGAGTCGTCATC
64 GGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCATC
* *
97646914 GATCTGTTCTGCTACTGCTTAGGGAGATAAGATCTGCG
129 GATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCG
97646952 AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
* * * * * *
97647017 AGAATAAGATCTACAAATTTAACCTGTTACCTTACTGGTTAGGGGATTAAGGCGGGTCTTCGTCG
66 AG-ATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCATCG
*
97647082 ATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGTG
130 ATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCG
* * *
97647119 AACCTGTTACCCTACTGCTTAGGGGATTAATGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
97647184 AGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
66 AGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
97647237 CTGAATTTTG
Statistics
Matches: 262, Mismatches: 20, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
165 6 0.02
166 106 0.40
167 150 0.57
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (166 bp):
AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCATCGA
TCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCG
Found at i:97648176 original size:1 final size:1
Alignment explanation
Indices: 97648166--97648253 Score: 59
Period size: 1 Copynumber: 88.0 Consensus size: 1
97648156 GGCCTCTCCA
* * * * * * * * * * *
97648166 TTTTTATTTTTTTTCTTTTTCTCTTTCTTTTTTTCTCTTTTTCTTTTCTTTTTTTTCTTTTTTTC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
97648231 TTTTTTTTTCTTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTT
97648254 GAAATAGAAG
Statistics
Matches: 61, Mismatches: 26, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.01, C:0.14, G:0.00, T:0.85
Consensus pattern (1 bp):
T
Found at i:97648184 original size:8 final size:8
Alignment explanation
Indices: 97648166--97648251 Score: 69
Period size: 7 Copynumber: 11.6 Consensus size: 8
97648156 GGCCTCTCCA
*
97648166 TTTTTATT
1 TTTTTCTT
*
97648174 TTTTT-TC
1 TTTTTCTT
97648181 TTTTTC-T
1 TTTTTCTT
*
97648188 CTT-TCTT
1 TTTTTCTT
*
97648195 TTTTTCTC
1 TTTTTCTT
97648203 TTTTTC-T
1 TTTTTCTT
*
97648210 TTTCT-TT
1 TTTTTCTT
97648217 TTTTTCTT
1 TTTTTCTT
97648225 TTTTTC-T
1 TTTTTCTT
97648232 TTTTT-TT
1 TTTTTCTT
*
97648239 TCTTTCTT
1 TTTTTCTT
97648247 TTTTT
1 TTTTT
97648252 TTGAAATAGA
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
6 2 0.03
7 31 0.51
8 28 0.46
ACGTcount: A:0.01, C:0.14, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:97648198 original size:20 final size:19
Alignment explanation
Indices: 97648173--97648253 Score: 89
Period size: 17 Copynumber: 4.3 Consensus size: 19
97648163 CCATTTTTAT
97648173 TTTTTTTCTTTTTCTCTTTC
1 TTTTTTTCTTTTT-TCTTTC
97648193 TTTTTTTCTCTTTTTCTTTTC
1 TTTTTTTCT-TTTTTC-TTTC
*
97648214 TTTTTTT-TCTTTT-TTTC
1 TTTTTTTCTTTTTTCTTTC
*
97648231 TTTTTTT-TTCTTTCTTT-
1 TTTTTTTCTTTTTTCTTTC
97648248 TTTTTT
1 TTTTTT
97648254 GAAATAGAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
17 21 0.38
18 3 0.05
19 4 0.07
20 12 0.22
21 15 0.27
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTTTTTCTTTTTTCTTTC
Found at i:97648204 original size:22 final size:21
Alignment explanation
Indices: 97648172--97648249 Score: 113
Period size: 21 Copynumber: 3.7 Consensus size: 21
97648162 TCCATTTTTA
97648172 TTTTTTTTCTTTTTCTCTTTC
1 TTTTTTTTCTTTTTCTCTTTC
97648193 TTTTTTTCTCTTTTTCT-TTTC
1 TTTTTTT-TCTTTTTCTCTTTC
* *
97648214 TTTTTTTTCTTTTTTTCTTTT
1 TTTTTTTTCTTTTTCTCTTTC
97648235 TTTTTCTTTCTTTTT
1 TTTTT-TTTCTTTTT
97648250 TTTTGAAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
20 8 0.15
21 26 0.50
22 18 0.35
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTTTCTTTTTCTCTTTC
Found at i:97648233 original size:42 final size:41
Alignment explanation
Indices: 97648166--97648253 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 41
97648156 GGCCTCTCCA
97648166 TTTTTATTTTTTTTCTTTTTCTCTTTCTTTTTT-TCTCTTTT
1 TTTTTATTTTTTTTCTTTTTCTCTTT-TTTTTTCTCTCTTTT
* * *
97648207 TCTTTTCTTTTTTTTCTTTTTTTCTTTTTTTTTCTTTCTTTT
1 T-TTTTATTTTTTTTCTTTTTCTCTTTTTTTTTCTCTCTTTT
97648249 TTTTT
1 TTTTT
97648254 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
41 11 0.26
42 31 0.74
ACGTcount: A:0.01, C:0.14, G:0.00, T:0.85
Consensus pattern (41 bp):
TTTTTATTTTTTTTCTTTTTCTCTTTTTTTTTCTCTCTTTT
Found at i:97648250 original size:22 final size:21
Alignment explanation
Indices: 97648167--97648251 Score: 109
Period size: 22 Copynumber: 4.0 Consensus size: 21
97648157 GCCTCTCCAT
*
97648167 TTTTATTTTTTTTCTTTTTCTC
1 TTTT-TTTTTTTTCTTTTTTTC
* *
97648189 -TTTCTTTTTTTCTCTTTTTC
1 TTTTTTTTTTTTCTTTTTTTC
97648209 TTTTCTTTTTTTTCTTTTTTTC
1 TTTT-TTTTTTTTCTTTTTTTC
97648231 TTTTTTTTTCTTTCTTTTTTT
1 TTTTTTTTT-TTTCTTTTTTT
97648252 TTGAAATAGA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
20 14 0.25
21 11 0.20
22 30 0.55
ACGTcount: A:0.01, C:0.14, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTTTTTTTCTTTTTTTC
Found at i:97648252 original size:14 final size:13
Alignment explanation
Indices: 97648173--97648253 Score: 83
Period size: 14 Copynumber: 5.7 Consensus size: 13
97648163 CCATTTTTAT
97648173 TTTTTTTCTTTTTC
1 TTTTTTT-TTTTTC
97648187 TCTTTCTTTTTTTCTC
1 T-TTT-TTTTTTT-TC
97648203 TTTTTCTTTTCTTT-
1 TTTTT-TTTT-TTTC
97648217 TTTTTCTTTTTTTC
1 TTTTT-TTTTTTTC
97648231 TTTTTTTTTCTTTC
1 TTTTTTTTT-TTTC
97648245 TTTTTTTTT
1 TTTTTTTTT
97648254 GAAATAGAAG
Statistics
Matches: 60, Mismatches: 0, Indels: 14
0.81 0.00 0.19
Matches are distributed among these distances:
13 7 0.12
14 30 0.50
15 15 0.25
16 8 0.13
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTTTTTTC
Found at i:97654041 original size:18 final size:18
Alignment explanation
Indices: 97654007--97654094 Score: 124
Period size: 18 Copynumber: 4.8 Consensus size: 18
97653997 TCATATCTTT
*
97654007 TAAGATTGTATATCATATC
1 TAAGATTGCA-ATCATATC
97654026 TAAGATTGCAATCATATC
1 TAAGATTGCAATCATATC
*
97654044 TAAGATTG-TATCATATC
1 TAAGATTGCAATCATATC
*
97654061 TAAGATTGCAATCATTTC
1 TAAGATTGCAATCATATC
97654079 TAAGATTGCATATCAT
1 TAAGATTGCA-ATCAT
97654095 TAAATATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
17 16 0.25
18 33 0.52
19 14 0.22
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (18 bp):
TAAGATTGCAATCATATC
Found at i:97654062 original size:35 final size:36
Alignment explanation
Indices: 97654007--97654094 Score: 142
Period size: 35 Copynumber: 2.4 Consensus size: 36
97653997 TCATATCTTT
97654007 TAAGATTGTATATCATATCTAAGATTGCAATCATATC
1 TAAGATTG-ATATCATATCTAAGATTGCAATCATATC
*
97654044 TAAGATTG-TATCATATCTAAGATTGCAATCATTTC
1 TAAGATTGATATCATATCTAAGATTGCAATCATATC
97654079 TAAGATTGCATATCAT
1 TAAGATTG-ATATCAT
97654095 TAAATATTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
35 34 0.71
37 14 0.29
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (36 bp):
TAAGATTGATATCATATCTAAGATTGCAATCATATC
Found at i:97667377 original size:42 final size:42
Alignment explanation
Indices: 97667295--97667377 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 42
97667285 AGAATGCTTC
* * *
97667295 AAGAAACACAAAAATAAAGATGAAATATGTTGGAAGAACTTT
1 AAGAAACACAAAAATAAAGATCAAATACGCTGGAAGAACTTT
*
97667337 AAGAAAC-CTAAAAATGAAGATCAAATACGCTGAGAA-AACTT
1 AAGAAACAC-AAAAATAAAGATCAAATACGCTG-GAAGAACTT
97667378 AAAACTCCCC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
41 1 0.03
42 31 0.89
43 3 0.09
ACGTcount: A:0.54, C:0.11, G:0.16, T:0.19
Consensus pattern (42 bp):
AAGAAACACAAAAATAAAGATCAAATACGCTGGAAGAACTTT
Found at i:97667672 original size:12 final size:12
Alignment explanation
Indices: 97667655--97667679 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97667645 GGAAGAAACC
97667655 AAAAAAAACAAA
1 AAAAAAAACAAA
97667667 AAAAAAAACAAA
1 AAAAAAAACAAA
97667679 A
1 A
97667680 TGGGAGATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAACAAA
Found at i:97671553 original size:3 final size:3
Alignment explanation
Indices: 97671545--97671577 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
97671535 ATAAAATCCA
*
97671545 TTC TTC TTC TTC TTC TTC TTA TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
97671578 ATATCGTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:97674920 original size:38 final size:39
Alignment explanation
Indices: 97674836--97674970 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
97674826 ACCAATATGG
*
97674836 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
97674875 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
97674913 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
97674954 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
97674971 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:97676552 original size:5 final size:5
Alignment explanation
Indices: 97676534--97676564 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
97676524 TTTCTTTTAT
97676534 ATATA ATAATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA
97676565 CTTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:97677647 original size:39 final size:40
Alignment explanation
Indices: 97677540--97677650 Score: 111
Period size: 38 Copynumber: 2.8 Consensus size: 40
97677530 GACCTCGAGT
* **
97677540 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAGC
** ** *
97677581 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
97677619 CGATGAGACACTGGGTGTCAACTATTACTTCG
1 CGATGAGACACTGGGTGTCAACTATTACTTCG
97677651 AACTATCCGA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
38 19 0.34
39 19 0.34
40 1 0.02
41 15 0.27
42 2 0.04
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
Found at i:97677661 original size:39 final size:39
Alignment explanation
Indices: 97677540--97677674 Score: 98
Period size: 39 Copynumber: 3.4 Consensus size: 39
97677530 GACCTCGAGT
* * *
97677540 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATA-GATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTC-GA-ACTATC
** ** * *
97677581 CGATGAGGTACTGGGTACCAACT-TTACTTCG-GCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
97677619 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
* *
97677658 CGATGAGGCATTGGGTG
1 CGATGAGACACTGGGTG
97677675 CCATATTGGT
Statistics
Matches: 72, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
37 1 0.01
38 20 0.28
39 30 0.42
40 4 0.06
41 15 0.21
42 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
Found at i:97683011 original size:27 final size:27
Alignment explanation
Indices: 97682973--97683024 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
97682963 GGTCTTGCCC
97682973 AGAGTAATGATCCACTATATTTCTCCT
1 AGAGTAATGATCCACTATATTTCTCCT
*
97683000 AGAGTAATGATCCACTATCTTTCTC
1 AGAGTAATGATCCACTATATTTCTC
97683025 GCAGTACAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (27 bp):
AGAGTAATGATCCACTATATTTCTCCT
Found at i:97685374 original size:17 final size:17
Alignment explanation
Indices: 97685337--97685375 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
97685327 AATTATTAAA
*
97685337 TTATTTTTTATAAATGT
1 TTATTTTTTATAAATGC
97685354 TTATTTTTTA-AATATGC
1 TTATTTTTTATAA-ATGC
97685371 TTATT
1 TTATT
97685376 ATATTAATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (17 bp):
TTATTTTTTATAAATGC
Found at i:97689078 original size:23 final size:23
Alignment explanation
Indices: 97689048--97689099 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
97689038 GTTGGACGAT
97689048 TCAAGTATTCGTTCGAGTCCGAG
1 TCAAGTATTCGTTCGAGTCCGAG
97689071 TCAAGTATTCGTTCGAGTCCGAG
1 TCAAGTATTCGTTCGAGTCCGAG
97689094 TCAAGT
1 TCAAGT
97689100 TAATAGGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (23 bp):
TCAAGTATTCGTTCGAGTCCGAG
Found at i:97690657 original size:19 final size:19
Alignment explanation
Indices: 97690633--97690670 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
97690623 TCGATTTTAA
97690633 CTCAAAATATAATTAAATT
1 CTCAAAATATAATTAAATT
97690652 CTCAAAATATAATTAAATT
1 CTCAAAATATAATTAAATT
97690671 ATTTAAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCAAAATATAATTAAATT
Found at i:97695866 original size:24 final size:25
Alignment explanation
Indices: 97695839--97695887 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
97695829 TTTATATTAG
*
97695839 TATAAAATTAA-ATTTTTATAATTT
1 TATAAAATTAATATTTTAATAATTT
**
97695863 TATATTATTAATATTTTAATAATTT
1 TATAAAATTAATATTTTAATAATTT
97695888 AATTTTCCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (25 bp):
TATAAAATTAATATTTTAATAATTT
Found at i:97696045 original size:16 final size:16
Alignment explanation
Indices: 97696024--97696076 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
97696014 CATTGGAATA
97696024 GAATAGGGCTGTAATG
1 GAATAGGGCTGTAATG
*
97696040 GAATAGAGG-TATAATG
1 GAATAG-GGCTGTAATG
*
97696056 GAATAGGGCTGTAATA
1 GAATAGGGCTGTAATG
97696072 GAATA
1 GAATA
97696077 AAGTTGTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 2 0.06
16 28 0.88
17 2 0.06
ACGTcount: A:0.40, C:0.04, G:0.32, T:0.25
Consensus pattern (16 bp):
GAATAGGGCTGTAATG
Found at i:97698772 original size:75 final size:75
Alignment explanation
Indices: 97698649--97698798 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
97698639 AGAAATTCAT
97698649 GCATTAGAAATAAAAACAAGCTATAAGCCTAAACATTTACACGCCTGATCAAATGATCTACAACA
1 GCATTAGAAATAAAAACAAGCTATAAGCCTAAACATTTACACGCCTGATCAAATGATCTACAACA
97698714 AAATGTAGAA
66 AAATGTAGAA
97698724 GCATTAGAAATAAAAACAAGCTATAAGCCTAAACATTTACACGCCTGATCAAATGATCTACAACA
1 GCATTAGAAATAAAAACAAGCTATAAGCCTAAACATTTACACGCCTGATCAAATGATCTACAACA
97698789 AAATGTAGAA
66 AAATGTAGAA
97698799 ACTGGAATAC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.48, C:0.19, G:0.12, T:0.21
Consensus pattern (75 bp):
GCATTAGAAATAAAAACAAGCTATAAGCCTAAACATTTACACGCCTGATCAAATGATCTACAACA
AAATGTAGAA
Found at i:97702937 original size:9 final size:9
Alignment explanation
Indices: 97702908--97702941 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
97702898 AAAATAAAGG
97702908 AAAATATAT
1 AAAATATAT
97702917 GAAAAT-TAT
1 -AAAATATAT
97702926 AAAATATAT
1 AAAATATAT
97702935 AAAATAT
1 AAAATAT
97702942 GTATGTACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 5 0.22
9 13 0.57
10 5 0.22
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAATATAT
Found at i:97703010 original size:13 final size:13
Alignment explanation
Indices: 97702992--97703051 Score: 61
Period size: 13 Copynumber: 4.6 Consensus size: 13
97702982 AATTATGAAA
97702992 ATATATAAAATAT
1 ATATATAAAATAT
*
97703005 ATATAT-AAGTAT
1 ATATATAAAATAT
*
97703017 ATATTTTAAAAT-T
1 ATA-TATAAAATAT
97703030 ACTATATAAAATAT
1 A-TATATAAAATAT
*
97703044 ACATATAA
1 ATATATAA
97703052 GTACGCATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
12 8 0.21
13 23 0.61
14 7 0.18
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (13 bp):
ATATATAAAATAT
Done.