Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 312 of 325
Found at i:98660504 original size:44 final size:44
Alignment explanation
Indices: 98660455--98660541 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
98660445 TGTTCAGGGA
* *
98660455 TACTTCAACCTT-GAGTCGATGAGACACTATAAGTGTCGTACTGT
1 TACTTCAA-CTTCGAGTCAATGAGACACCATAAGTGTCGTACTGT
* * *
98660499 TACTTCGACTTCGAGTCAATGAGGCACCATATGTGTCGTACTG
1 TACTTCAACTTCGAGTCAATGAGACACCATAAGTGTCGTACTG
98660542 CTATTGTTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (44 bp):
TACTTCAACTTCGAGTCAATGAGACACCATAAGTGTCGTACTGT
Found at i:98666521 original size:25 final size:27
Alignment explanation
Indices: 98666484--98666536 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
98666474 TCAAACATGC
98666484 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
98666510 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
98666536 A
1 A
98666537 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:98668045 original size:26 final size:26
Alignment explanation
Indices: 98668014--98668119 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
98668004 TGAAATTCCC
98668014 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
98668040 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
98668066 ATCAT-GAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
98668091 ATCATGGAACATTTACCT-AACCATT
1 ATCATGGAACATTTACCTAAACCATT
98668116 ATCA
1 ATCA
98668120 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
25 33 0.45
26 41 0.55
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:98668090 original size:51 final size:51
Alignment explanation
Indices: 98668014--98668119 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 51
98668004 TGAAATTCCC
98668014 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAA-CCATT
* *
98668066 ATCAT-GAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCATT
98668116 ATCA
1 ATCA
98668120 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
50 9 0.17
51 38 0.73
52 5 0.10
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.33
Consensus pattern (51 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCATT
Found at i:98672258 original size:13 final size:13
Alignment explanation
Indices: 98672240--98672271 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
98672230 TTTCCAGCAA
98672240 TTATGAATTTATT
1 TTATGAATTTATT
98672253 TTATGAATTTATT
1 TTATGAATTTATT
*
98672266 TGATGA
1 TTATGA
98672272 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:98672494 original size:49 final size:51
Alignment explanation
Indices: 98672366--98672563 Score: 240
Period size: 56 Copynumber: 3.8 Consensus size: 51
98672356 ATTTGGGTAA
*
98672366 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC----GATCATG
* *
98672422 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA-GATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCATG
* * *
98672472 AGAGGTCCC-TATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCATG
** *
98672521 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
98672564 TGTTATTATC
Statistics
Matches: 126, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
48 1 0.01
49 35 0.28
50 17 0.13
51 31 0.25
55 2 0.02
56 40 0.32
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (51 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCATG
Found at i:98672551 original size:100 final size:101
Alignment explanation
Indices: 98672378--98672563 Score: 268
Period size: 100 Copynumber: 1.8 Consensus size: 101
98672368 AGATCCCATG
* * **
98672378 TAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCCATGTAAGACCAT
1 TAAGACCATGTCTGGGACATGGCATGGGCATCC---A-ATCACGAGACATCCCATGTAAGACCAT
98672443 GTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCTA
62 GTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCTA
98672483 TAAGACCATGTCTGGGACATGGCATGGGCA-CC-ATCACGAGAACATCCCATGTAAGACCATGTC
1 TAAGACCATGTCTGGGACATGGCATGGGCATCCAATCACGAG-ACATCCCATGTAAGACCATGTC
*
98672546 TGGGACATGGCTTTGGCA
65 TGGGACATGGCGTTGGCA
98672564 TGTTATTATC
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
99 7 0.09
100 37 0.49
104 2 0.03
105 29 0.39
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.22
Consensus pattern (101 bp):
TAAGACCATGTCTGGGACATGGCATGGGCATCCAATCACGAGACATCCCATGTAAGACCATGTCT
GGGACATGGCGTTGGCACCGAGATGAGAGGTCCCTA
Found at i:98675863 original size:25 final size:27
Alignment explanation
Indices: 98675826--98675878 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
98675816 TCAAACATGC
98675826 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
98675852 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
98675878 A
1 A
98675879 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:98677395 original size:26 final size:26
Alignment explanation
Indices: 98677364--98677471 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
98677354 TGAAATTCCC
*
98677364 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
98677390 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
98677416 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
98677442 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
98677468 ATCA
1 ATCA
98677472 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:98677926 original size:38 final size:38
Alignment explanation
Indices: 98677838--98677927 Score: 107
Period size: 38 Copynumber: 2.4 Consensus size: 38
98677828 ACACGTGGAT
*
98677838 TAAT-TAAATACATATATTAGTAATTATTATTTACTTA
1 TAATATAAATAAATATATTAGTAATTATTATTTACTTA
*
98677875 TAATATAAGTAAATATATTA-T-ATTATTATATTA-TTA
1 TAATATAAATAAATATATTAGTAATTATTAT-TTACTTA
98677911 TAAATATAAAATAAATA
1 T-AATAT-AAATAAATA
98677928 AATCAAATTA
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
36 12 0.26
37 13 0.28
38 21 0.46
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (38 bp):
TAATATAAATAAATATATTAGTAATTATTATTTACTTA
Found at i:98684207 original size:25 final size:23
Alignment explanation
Indices: 98684165--98684234 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 23
98684155 GAGCTATAAT
*
98684165 CAGTAAGCTCCTCCTGAGCTGATGAA
1 CAGTAAGCT-CTACTGAGCTGA--AA
*
98684191 CAGTAAGCTCTATTGAGCTGAAA
1 CAGTAAGCTCTACTGAGCTGAAA
*
98684214 CGGTAAGCTCTGAC-GAGCTGA
1 CAGTAAGCTCT-ACTGAGCTGA
98684235 TTTATCGGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
23 19 0.49
24 1 0.03
25 10 0.26
26 9 0.23
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (23 bp):
CAGTAAGCTCTACTGAGCTGAAA
Found at i:98701040 original size:21 final size:22
Alignment explanation
Indices: 98701023--98701063 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
98701013 CTGTTTTGTT
98701023 GTTG-TTTGCTAGC-ATTTTGAC
1 GTTGTTTTGCT-GCTATTTTGAC
98701044 GTTGTTTTGCTGCTATTTTG
1 GTTGTTTTGCTGCTATTTTG
98701064 CTATTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.10, C:0.12, G:0.24, T:0.54
Consensus pattern (22 bp):
GTTGTTTTGCTGCTATTTTGAC
Found at i:98702216 original size:14 final size:14
Alignment explanation
Indices: 98702197--98702223 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
98702187 AAAATGCCGC
98702197 TAAAAACAGAGCAA
1 TAAAAACAGAGCAA
98702211 TAAAAACAGAGCA
1 TAAAAACAGAGCA
98702224 TTAGCGGCGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.15, G:0.15, T:0.07
Consensus pattern (14 bp):
TAAAAACAGAGCAA
Found at i:98702232 original size:54 final size:55
Alignment explanation
Indices: 98702158--98702264 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 55
98702148 AAAAATTATA
* *
98702158 AAAAACGGAGCAATAGCGGCG-TTTTGCCAAAAATGCCGCTAAAAA-CAGAGCAAT
1 AAAAACAGAGCAATAGCGGCGCTTTTG-CAAAAACGCCGCTAAAAACCAGAGCAAT
* **
98702212 AAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCA
1 AAAAACAGAGCAATAGCGGCGCTTTTGCAAAAACGCCGCTAAAAACCAGAGCA
98702265 TTAGCGGCGT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.74
55 12 0.26
ACGTcount: A:0.41, C:0.21, G:0.22, T:0.15
Consensus pattern (55 bp):
AAAAACAGAGCAATAGCGGCGCTTTTGCAAAAACGCCGCTAAAAACCAGAGCAAT
Found at i:98702281 original size:42 final size:41
Alignment explanation
Indices: 98702211--98702337 Score: 204
Period size: 42 Copynumber: 3.1 Consensus size: 41
98702201 AACAGAGCAA
98702211 TAAAAA-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
98702251 TAAAAACCAGAGCATTAGCGGCGTTTTTTGGTAAAACGCCGC
1 TAAAAACCAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGC
* *
98702293 TAAAAACCAGAGCA-TAGCGGCGCTTTCGATAAAACGCCGC
1 TAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
98702333 TAAAA
1 TAAAA
98702338 GTCATATAAT
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
40 26 0.32
41 24 0.30
42 31 0.38
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (41 bp):
TAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:98702878 original size:13 final size:13
Alignment explanation
Indices: 98702856--98702889 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
98702846 GGTTTAAGAT
*
98702856 TTAGGTGTTAGGG
1 TTAGGGGTTAGGG
98702869 TTAGGGGTTAGGG
1 TTAGGGGTTAGGG
*
98702882 TTAAGGGT
1 TTAGGGGT
98702890 GGGGGTTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.00, G:0.47, T:0.35
Consensus pattern (13 bp):
TTAGGGGTTAGGG
Found at i:98702954 original size:7 final size:7
Alignment explanation
Indices: 98702832--98702956 Score: 51
Period size: 7 Copynumber: 18.0 Consensus size: 7
98702822 GTTTAAAGGT
98702832 GGTTTAAG
1 GGTTT-AG
*
98702840 GG-TTGG
1 GGTTTAG
*
98702846 GGTTTAA
1 GGTTTAG
*
98702853 GATTTA-
1 GGTTTAG
98702859 GGTGTTAG
1 GGT-TTAG
98702867 GG-TTAG
1 GGTTTAG
*
98702873 GGGTTAG
1 GGTTTAG
*
98702880 GGTTAAG
1 GGTTTAG
**
98702887 GG-TGGG
1 GGTTTAG
* *
98702893 GGTTCAT
1 GGTTTAG
98702900 GGTTTAG
1 GGTTTAG
* *
98702907 GGCTTAT
1 GGTTTAG
* *
98702914 GTTTTAA
1 GGTTTAG
*
98702921 GGTTTAA
1 GGTTTAG
98702928 GGTTTAG
1 GGTTTAG
*
98702935 GGATTAG
1 GGTTTAG
*
98702942 AAGTTTAG
1 -GGTTTAG
98702950 GGTTTAG
1 GGTTTAG
98702957 ATTAGTTAGT
Statistics
Matches: 86, Mismatches: 25, Indels: 13
0.69 0.20 0.10
Matches are distributed among these distances:
6 15 0.17
7 62 0.72
8 9 0.10
ACGTcount: A:0.20, C:0.02, G:0.40, T:0.38
Consensus pattern (7 bp):
GGTTTAG
Found at i:98703114 original size:15 final size:15
Alignment explanation
Indices: 98703096--98703138 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
98703086 ATTATTTTAA
98703096 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
98703111 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
98703125 GATTTATGG-TTATG
1 GGTTTATGGATTATG
98703139 TAAGAGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 13 0.54
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.47
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:98703116 original size:22 final size:22
Alignment explanation
Indices: 98703091--98703133 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
98703081 GAGTTATTAT
*
98703091 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGATTAT-GATTTATGGG
*
98703113 TTTAGGGATTATGATTTATGG
1 TTTAAGGATTATGATTTATGG
98703134 TTATGTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGATTTATGGG
Found at i:98703756 original size:7 final size:7
Alignment explanation
Indices: 98703741--98703780 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
98703731 TTAAAATTTT
*
98703741 AAAATTA
1 AAAAATA
98703748 AAAAATA
1 AAAAATA
98703755 AAAAATA
1 AAAAATA
98703762 AAAAATA
1 AAAAATA
98703769 AAAAATA
1 AAAAATA
98703776 AAAAA
1 AAAAA
98703781 CTTAAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAATA
Found at i:98703787 original size:21 final size:21
Alignment explanation
Indices: 98703739--98703787 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
98703729 TTTTAAAATT
98703739 TTAAAATTAAAAAATAAAAAA
1 TTAAAATTAAAAAATAAAAAA
* *
98703760 TAAAAAATAAAAAATAAAAAA
1 TTAAAATTAAAAAATAAAAAA
98703781 CTTAAAA
1 -TTAAAA
98703788 ATTTAATAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (21 bp):
TTAAAATTAAAAAATAAAAAA
Found at i:98706764 original size:18 final size:20
Alignment explanation
Indices: 98706743--98706780 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
98706733 CGTTTGTGGG
98706743 AAAA-GCGCCGCTAAAGGTA
1 AAAACGCGCCGCTAAAGGTA
98706762 AAAACGCGCCGCTAAAGGT
1 AAAACGCGCCGCTAAAGGT
98706781 CAAGACCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.39, C:0.24, G:0.26, T:0.11
Consensus pattern (20 bp):
AAAACGCGCCGCTAAAGGTA
Found at i:98706831 original size:43 final size:43
Alignment explanation
Indices: 98706762--98706886 Score: 187
Period size: 43 Copynumber: 2.9 Consensus size: 43
98706752 GCTAAAGGTA
* *
98706762 AAAACGCGCCGCTAAAGGTCAAGACCTCTAGCGGCGTTTGTGGG
1 AAAA-GCGCCGCTAAAGGTCATGACCTATAGCGGCGTTTGTGGG
* *
98706806 GAAAGCGCCGCTAAAGGTCTTGACCTATAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCATGACCTATAGCGGCGTTTGTGGG
* *
98706849 AAAAGCGCTGCTAAAGGTCATGACCTTTAGCGGCGTTT
1 AAAAGCGCCGCTAAAGGTCATGACCTATAGCGGCGTTT
98706887 TTTTAAATAA
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
43 70 0.96
44 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCATGACCTATAGCGGCGTTTGTGGG
Found at i:98707800 original size:14 final size:15
Alignment explanation
Indices: 98707771--98707800 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
98707761 GGCACAATCG
98707771 ATTTTTTTAATATTA
1 ATTTTTTTAATATTA
98707786 ATTTTTTTAAT-TTA
1 ATTTTTTTAATATTA
98707800 A
1 A
98707801 AAAATTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
ATTTTTTTAATATTA
Found at i:98707921 original size:27 final size:27
Alignment explanation
Indices: 98707891--98707942 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
98707881 CCCGAAACCG
*
98707891 GTCGAGCCTGTCAGGTAGGCACGACTA
1 GTCGAGCCTGACAGGTAGGCACGACTA
*
98707918 GTCGTGCCTGACAGGTAGGCACGAC
1 GTCGAGCCTGACAGGTAGGCACGAC
98707943 ACCCCCTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (27 bp):
GTCGAGCCTGACAGGTAGGCACGACTA
Found at i:98708417 original size:92 final size:93
Alignment explanation
Indices: 98708321--98708491 Score: 235
Period size: 92 Copynumber: 1.8 Consensus size: 93
98708311 ACTAGGTTAC
98708321 AAATTGTTAGTGTTTAGT-GTATTAGTGTATT-GTG-ATT-T-TTTTAGTAATAATATATTTTTT
1 AAATTGTTAGTGTTTAGTAGT-TTAGTGTATTAGTGTATTGTATTTTAGTAATAATATA---TTT
98708381 AAAAAATAATTTTATAGTTGATTAGGTTATAT
62 AAAAAATAATTTTATAGTTGATTAGGTTATAT
** *
98708413 AAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATATATTTAAA
1 AAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGT-ATTTTAGTAATAATATATTTAAA
98708478 AAATAATTTTATAG
65 AAATAATTTTATAG
98708492 CTATTTTATT
Statistics
Matches: 70, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
92 28 0.40
93 5 0.07
94 23 0.33
95 1 0.01
97 13 0.19
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (93 bp):
AAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTATTTTAGTAATAATATATTTAAAA
AATAATTTTATAGTTGATTAGGTTATAT
Found at i:98708746 original size:115 final size:114
Alignment explanation
Indices: 98708400--98708822 Score: 710
Period size: 114 Copynumber: 3.7 Consensus size: 114
98708390 TTTTATAGTT
*
98708400 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
*
98708465 TAATATA-TTT-AAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
66 TAATATATTTTAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
* * *
98708512 GATTAGGCTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGCGTATTGTAATTTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
*
98708577 TAATATATTTAAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
66 TAATATATTTTAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
*
98708626 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGAGTATTAGTGTATTGTGATTTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGA-TTTTTTTA
*
98708691 GTAATATATTTTAAAAAAATATTTTTAGAGCTATTTTATTAGTAATTTAA
65 GTAATATATTTTAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
98708741 GATTAGGTTATAT--ATTGTTAGTGTTTAGTGGTTTAGTGTGTATTAGTGTATTGTGATTTTTTT
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTA--GTGTATTAGTGTATTGTGATTTTTTT
*
98708804 AGTAATGTATTTTAAAAAA
64 AGTAATATATTTTAAAAAA
98708823 TTTTATAGTT
Statistics
Matches: 292, Mismatches: 14, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
112 68 0.23
113 24 0.08
114 113 0.39
115 87 0.30
ACGTcount: A:0.32, C:0.01, G:0.17, T:0.50
Consensus pattern (114 bp):
GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
TAATATATTTTAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
Found at i:98708802 original size:229 final size:226
Alignment explanation
Indices: 98708400--98708822 Score: 706
Period size: 229 Copynumber: 1.9 Consensus size: 226
98708390 TTTTATAGTT
*
98708400 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGAGTATTAGTGTATTGTGATTTTTTTAG
*
98708465 TAATATATTTAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAAGATTAGGCTATATAAATT
66 TAATATATTTAAAAAATAATTTTAGAGCTATTTTATTAGTAATTTAAGATTAGGCTATATAAATT
98708530 GTTAGTGTTTAGTGGTTTAGTGTATTAGCGTATTGTAATTTTTTTAGTAATATATTTAAAAAAAA
131 GTTAGTGTTTAGTGGTTTAGTGTATTAGCGTATTGTAATTTTTTTAGTAATATATTTAAAAAAAA
98708595 TATTTTTATAGCTATTTTATTAGTAATTTAA
196 TATTTTTATAGCTATTTTATTAGTAATTTAA
*
98708626 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGAGTATTAGTGTATTGTGATTTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGAGTATTAGTGTATTGTGA-TTTTTTTA
* *
98708691 GTAATATATTTTAAAAAAATATTTTTAGAGCTATTTTATTAGTAATTTAAGATTAGG-T-TATAT
65 GTAATATA-TTT-AAAAAATAATTTTAGAGCTATTTTATTAGTAATTTAAGATTAGGCTATATAA
* * * *
98708754 ATTGTTAGTGTTTAGTGGTTTAGTGTGTATTAGTGTATTGTGATTTTTTTAGTAATGTATTTTAA
128 ATTGTTAGTGTTTAGTGGTTTA--GTGTATTAGCGTATTGTAATTTTTTTAGTAATATATTTAAA
98708819 AAAA
191 AAAA
98708823 TTTTATAGTT
Statistics
Matches: 183, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
226 54 0.30
227 42 0.23
228 4 0.02
229 83 0.45
ACGTcount: A:0.32, C:0.01, G:0.17, T:0.50
Consensus pattern (226 bp):
GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGAGTATTAGTGTATTGTGATTTTTTTAG
TAATATATTTAAAAAATAATTTTAGAGCTATTTTATTAGTAATTTAAGATTAGGCTATATAAATT
GTTAGTGTTTAGTGGTTTAGTGTATTAGCGTATTGTAATTTTTTTAGTAATATATTTAAAAAAAA
TATTTTTATAGCTATTTTATTAGTAATTTAA
Found at i:98708924 original size:15 final size:16
Alignment explanation
Indices: 98708895--98708926 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
98708885 TGTGATTTTT
98708895 TAATGTAATTTTTATA
1 TAATGTAATTTTTATA
98708911 TAATGTAA-TTTTATA
1 TAATGTAATTTTTATA
98708926 T
1 T
98708927 TATTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTAATTTTTATA
Found at i:98710019 original size:15 final size:17
Alignment explanation
Indices: 98710001--98710032 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
98709991 TTTTAATTAA
98710001 ACAA-TATTT-TGACAT
1 ACAATTATTTCTGACAT
98710016 ACAATTATTTCTGACAT
1 ACAATTATTTCTGACAT
98710033 TTCTTCACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 5 0.33
17 6 0.40
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.41
Consensus pattern (17 bp):
ACAATTATTTCTGACAT
Found at i:98711208 original size:131 final size:132
Alignment explanation
Indices: 98710966--98711248 Score: 397
Period size: 131 Copynumber: 2.2 Consensus size: 132
98710956 TTATTCATTC
** * *
98710966 AAAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTACCCTAACGTG
* *
98711031 TTGGATTGCAATTTCGCGTTTGCTCAAAATAATCGAATAGCACTTCAAAATTTCACTCACGTCTT
66 TTGGATTGCAATTTCGCGTTCGCTCAAAATAATCGAATAGCACTTCAAAATTTCACTCACATCTT
98711096 -T
131 CT
* * *
98711097 TAAAATTCTTCAAAACGAAGACGATATTTGATACTTAGCAATTCGCGGAATCGTACCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTACCCTAACGTG
* * * * * * *
98711162 TTGGGTTGCAATTTCGCGTTCGCTCAAAGTAATCGAGTATCCCTTCAAAATTTCATTCATATCTT
66 TTGGATTGCAATTTCGCGTTCGCTCAAAATAATCGAATAGCACTTCAAAATTTCACTCACATCTT
98711227 CT
131 CT
* *
98711229 AAAAATTATTTAAAACGAAG
1 AAAAATTCTTCAAAACGAAG
98711249 GCAACATTCA
Statistics
Matches: 132, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
131 114 0.86
132 18 0.14
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTACCCTAACGTG
TTGGATTGCAATTTCGCGTTCGCTCAAAATAATCGAATAGCACTTCAAAATTTCACTCACATCTT
CT
Found at i:98711298 original size:131 final size:129
Alignment explanation
Indices: 98710966--98711331 Score: 349
Period size: 131 Copynumber: 2.8 Consensus size: 129
98710956 TTATTCATTC
* * * * *
98710966 AAAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTATTCAAAACGAAGACAACATTAGA--TTTGACAATTCGCGGAATCGTGCCCTAACGTG
* * *
98711031 TTGGATTGCAATTTCGCGTTTGCTCAAAATAATCGAATAGCACTTCAAAATTTCACTCACGTCTT
64 TTGGGTTGCAATTTCGCGTTCGCTCAAAATAATCGAATAGCACTTCAAAATTTCACTCACATCTT
98711096 T
129 T
* * * * * *
98711097 TAAAATTCTTCAAAACGAAGACGATATTTGATACTT-AGCAATTCGCGGAATCGTACCCTAACGT
1 AAAAATTATTCAAAACGAAGACAACATTAGAT--TTGA-CAATTCGCGGAATCGTGCCCTAACGT
* * * * * *
98711161 GTTGGGTTGCAATTTCGCGTTCGCTCAAAGTAATCGAGTATCCCTTCAAAATTTCATTCATATCT
63 GTTGGGTTGCAATTTCGCGTTCGCTCAAAATAATCGAATAGCACTTCAAAATTTCACTCACATCT
98711226 TCT
128 T-T
* * * * * *
98711229 AAAAATTATTTAAAACGAAGGCAACATTCAGCATTTGACAATTCG-AGAATCATGCCCTATCGTA
1 AAAAATTATTCAAAACGAAGACAACATT-AG-ATTTGACAATTCGCGGAATCGTGCCCTAACGTG
* ** * * * *
98711293 CTGGGTTGTGATTTCTCGTTTGTTCAAAATGATCGAATA
64 TTGGGTTGCAATTTCGCGTTCGCTCAAAATAATCGAATA
98711332 TTCTTTTATA
Statistics
Matches: 193, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
129 1 0.01
131 156 0.81
132 32 0.17
133 2 0.01
134 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (129 bp):
AAAAATTATTCAAAACGAAGACAACATTAGATTTGACAATTCGCGGAATCGTGCCCTAACGTGTT
GGGTTGCAATTTCGCGTTCGCTCAAAATAATCGAATAGCACTTCAAAATTTCACTCACATCTTT
Found at i:98713346 original size:33 final size:33
Alignment explanation
Indices: 98713250--98713367 Score: 109
Period size: 33 Copynumber: 3.6 Consensus size: 33
98713240 ATTTATCTTA
* *
98713250 GTACTCTGCTCCT-TCCGGCCCGTATCCACCCAT-
1 GTACTCTACTCCTCT-CGGCCCGTATCCA-CCGTC
*
98713283 GTACTCAACTCCTC-CAGAG-CCGTATCCACCGTC
1 GTACTCTACTCCTCTC-G-GCCCGTATCCACCGTC
* *
98713316 GTACTCTACTCCTCTCGGCCCATATCCACCGCC
1 GTACTCTACTCCTCTCGGCCCGTATCCACCGTC
* *
98713349 ATATTCTACTCCTCTCGGC
1 GTACTCTACTCCTCTCGGC
98713368 TCAAGTTCAT
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
32 5 0.07
33 64 0.90
34 2 0.03
ACGTcount: A:0.16, C:0.44, G:0.14, T:0.26
Consensus pattern (33 bp):
GTACTCTACTCCTCTCGGCCCGTATCCACCGTC
Found at i:98718896 original size:26 final size:26
Alignment explanation
Indices: 98718857--98718908 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
98718847 ACGGAACATG
*
98718857 TTAGATAATGAAAGCATACTAAGCTT
1 TTAGATAATAAAAGCATACTAAGCTT
98718883 TTAGATAATAAAAGCATACTAAGCTT
1 TTAGATAATAAAAGCATACTAAGCTT
98718909 AAATTCAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (26 bp):
TTAGATAATAAAAGCATACTAAGCTT
Found at i:98721049 original size:3 final size:3
Alignment explanation
Indices: 98721041--98721068 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
98721031 GGACAATTTG
98721041 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
98721069 AAGAACAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:98724590 original size:37 final size:37
Alignment explanation
Indices: 98724512--98724590 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
98724502 AATTAAATTT
* * * * *
98724512 TAAAATATTTATAAAAATTTCAAAATTTATATTTTTT
1 TAAAATATTTATAAAAAGTTAAAAATTTAAAATTTTC
98724549 TAAAATA-TTATAAAAAAGTTAAAAATTTAAAATTTTC
1 TAAAATATTTAT-AAAAAGTTAAAAATTTAAAATTTTC
98724586 TAAAA
1 TAAAA
98724591 CAATACCTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 4 0.11
37 32 0.89
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (37 bp):
TAAAATATTTATAAAAAGTTAAAAATTTAAAATTTTC
Found at i:98728936 original size:7 final size:7
Alignment explanation
Indices: 98728924--98728969 Score: 74
Period size: 7 Copynumber: 6.6 Consensus size: 7
98728914 TTGATATGTT
98728924 ATTTCAC
1 ATTTCAC
98728931 ATTTCAC
1 ATTTCAC
98728938 ATTTCAC
1 ATTTCAC
98728945 ATTTCAC
1 ATTTCAC
*
98728952 ATTTCCC
1 ATTTCAC
*
98728959 ATTTCCC
1 ATTTCAC
98728966 ATTT
1 ATTT
98728970 ACAGTTGTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.24, C:0.30, G:0.00, T:0.46
Consensus pattern (7 bp):
ATTTCAC
Found at i:98731234 original size:40 final size:40
Alignment explanation
Indices: 98731179--98731355 Score: 300
Period size: 40 Copynumber: 4.4 Consensus size: 40
98731169 GGCTCGGATG
* *
98731179 TAATAACCAGCACGAATGCCTTCCGGACTTAACCCGGTTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
*
98731219 TAATAACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
* *
98731259 TAATAACCCGCACGAATGCCTTTGGGACTTACCCCGGTTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
98731299 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
*
98731339 CAATAACCCGCACGAAT
1 TAATAACCCGCACGAAT
98731356 ACTATGCACA
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 129 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (40 bp):
TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
Found at i:98743003 original size:20 final size:21
Alignment explanation
Indices: 98742978--98743016 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
98742968 TTTGGCTTAA
98742978 AGTATCAATACC-TTTAACCT
1 AGTATCAATACCATTTAACCT
*
98742998 AGTATCGATACCATTTAAC
1 AGTATCAATACCATTTAAC
98743017 GATTTTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (21 bp):
AGTATCAATACCATTTAACCT
Found at i:98748583 original size:21 final size:21
Alignment explanation
Indices: 98748545--98748584 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
98748535 AAAATATTAT
* *
98748545 AAATGTATTTTTTTATAATAG
1 AAATGTATTTTATAATAATAG
*
98748566 AAATTTATTTTATAATAAT
1 AAATGTATTTTATAATAAT
98748585 TTAATATTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (21 bp):
AAATGTATTTTATAATAATAG
Found at i:98748592 original size:18 final size:16
Alignment explanation
Indices: 98748567--98748613 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 16
98748557 TTATAATAGA
98748567 AATT-TATTTTATAAT
1 AATTATATTTTATAAT
*
98748582 AATTTAATATTTTAAAAT
1 AA-TT-ATATTTTATAAT
98748600 AATTATATTTTATA
1 AATTATATTTTATA
98748614 TAAACTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 2 0.07
16 11 0.41
17 2 0.07
18 12 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
AATTATATTTTATAAT
Found at i:98753885 original size:38 final size:36
Alignment explanation
Indices: 98753821--98753891 Score: 92
Period size: 35 Copynumber: 1.9 Consensus size: 36
98753811 TATTATAATT
98753821 ATAATATATAATTTAAAAATATTAA-TTAATTTGTG
1 ATAATATATAATTTAAAAATATTAATTTAATTTGTG
98753856 ATAAT-TATATATTTAAAAATAATTATAATTTAATTT
1 ATAATATATA-ATTTAAAAAT-A-T-TAATTTAATTT
98753892 ACGATTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
34 4 0.13
35 15 0.48
36 1 0.03
37 1 0.03
38 3 0.10
39 7 0.23
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (36 bp):
ATAATATATAATTTAAAAATATTAATTTAATTTGTG
Found at i:98754549 original size:15 final size:16
Alignment explanation
Indices: 98754529--98754558 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98754519 AAAATTAAAT
98754529 TTTATA-TTAAATTAC
1 TTTATATTTAAATTAC
98754544 TTTATATTTAAATTA
1 TTTATATTTAAATTA
98754559 TTATGTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTATATTTAAATTAC
Found at i:98755225 original size:19 final size:19
Alignment explanation
Indices: 98755189--98755227 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
98755179 TCTTTAAAAA
**
98755189 TATTTTTTTTCTAATTTTC
1 TATTTTTTTTAGAATTTTC
*
98755208 TATTTTTTTTAGATTTTTC
1 TATTTTTTTTAGAATTTTC
98755227 T
1 T
98755228 GAATTTTTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (19 bp):
TATTTTTTTTAGAATTTTC
Found at i:98755825 original size:22 final size:23
Alignment explanation
Indices: 98755780--98755828 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 23
98755770 TTTATAGATC
98755780 ATTTATAAATTTCATAAATAATAT
1 ATTTATAAATTTCAT-AATAATAT
98755804 ATTTATATAATTT-AT-ATAATAT
1 ATTTATA-AATTTCATAATAATAT
98755826 ATT
1 ATT
98755829 ATACTCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.42
24 9 0.38
25 5 0.21
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTTATAAATTTCATAATAATAT
Found at i:98756858 original size:18 final size:18
Alignment explanation
Indices: 98756831--98756910 Score: 54
Period size: 18 Copynumber: 4.4 Consensus size: 18
98756821 GTGTCAAATG
*
98756831 ATATTTAAAAATAAAAAA
1 ATATTAAAAAATAAAAAA
**
98756849 ATATTAAAAAATTGAAAA
1 ATATTAAAAAATAAAAAA
* * * * *
98756867 TTTTTATAAAATTACAAA
1 ATATTAAAAAATAAAAAA
98756885 AT-TTAAAAAAAATAAAAAA
1 ATATT--AAAAAATAAAAAA
*
98756904 TTATTAA
1 ATATTAA
98756911 TTATTTTTTT
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
17 2 0.04
18 31 0.67
19 11 0.24
20 2 0.04
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (18 bp):
ATATTAAAAAATAAAAAA
Found at i:98756925 original size:30 final size:27
Alignment explanation
Indices: 98756892--98756945 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
98756882 AAAATTTAAA
98756892 AAAAATAAAAAATTATTAATTATTTTTTT
1 AAAAATAAAAAATT-TTAA-TATTTTTTT
* *
98756921 AAAAATTAGAAATTTTAATATTTTT
1 AAAAATAAAAAATTTTAATATTTTT
98756946 GAATTTTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
28 4 0.17
29 12 0.52
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
AAAAATAAAAAATTTTAATATTTTTTT
Found at i:98757282 original size:17 final size:17
Alignment explanation
Indices: 98757257--98757295 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
98757247 TTTTAGTATT
98757257 TTTTATATTTTTATATAA
1 TTTTATATTTTTA-ATAA
98757275 TTTT-TATTTTTAATAA
1 TTTTATATTTTTAATAA
*
98757291 ATTTA
1 TTTTA
98757296 ATAAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 7 0.37
17 8 0.42
18 4 0.21
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTATATTTTTAATAA
Found at i:98757344 original size:18 final size:18
Alignment explanation
Indices: 98757292--98757347 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
98757282 TTTTAATAAA
*
98757292 TTTAATAAATTTTTATTT
1 TTTAATAAATTTTAATTT
** *
98757310 TTTAAGCATTTTGTAATTT
1 TTTAATAAATTT-TAATTT
98757329 TTTAATAAATTTTAATTT
1 TTTAATAAATTTTAATTT
98757347 T
1 T
98757348 ATCACATTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
18 16 0.53
19 14 0.47
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (18 bp):
TTTAATAAATTTTAATTT
Found at i:98758246 original size:3 final size:3
Alignment explanation
Indices: 98758240--98758274 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
98758230 ATCATCGTCG
98758240 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
98758275 GAATAAAGGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:98765196 original size:52 final size:52
Alignment explanation
Indices: 98765117--98765287 Score: 279
Period size: 52 Copynumber: 3.2 Consensus size: 52
98765107 TACTTCTGAT
*
98765117 CAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
1 CAAGTGA-AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
*
98765170 CAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
* *
98765222 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
*
98765274 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
98765288 GCTACACTTA
Statistics
Matches: 111, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
52 94 0.85
53 17 0.15
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (52 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
Found at i:98765297 original size:37 final size:37
Alignment explanation
Indices: 98765250--98765396 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
98765240 TGATAGCTTC
* *
98765250 GGCTATACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
98765287 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
*
98765324 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
**
98765361 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
98765396 G
1 G
98765397 ATCATACGTA
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAAACAAAGTGATAAGT
Found at i:98767457 original size:44 final size:43
Alignment explanation
Indices: 98767409--98767493 Score: 143
Period size: 44 Copynumber: 2.0 Consensus size: 43
98767399 TGAATGTAGA
98767409 AAAAAATTAAATATATTTTCTTATAGATACTTTTATGGTAAAGT
1 AAAAAATTAAATATATTTTCTTATAGATACTTTTAT-GTAAAGT
* *
98767453 AAAAAATTAAATATATTTTCTTATAGGTTCTTTTATGTAAA
1 AAAAAATTAAATATATTTTCTTATAGATACTTTTATGTAAA
98767494 TTGTCATGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 5 0.13
44 34 0.87
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (43 bp):
AAAAAATTAAATATATTTTCTTATAGATACTTTTATGTAAAGT
Found at i:98774081 original size:24 final size:23
Alignment explanation
Indices: 98774047--98774092 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
98774037 CATTATCATT
98774047 ATTTAAAATAAAAAATGATAAAA
1 ATTTAAAATAAAAAATGATAAAA
* *
98774070 ATTTATAAATAAATATTGATAAA
1 ATTTA-AAATAAAAAATGATAAA
98774093 TTTATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
ATTTAAAATAAAAAATGATAAAA
Found at i:98774102 original size:24 final size:25
Alignment explanation
Indices: 98774045--98774104 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 25
98774035 TACATTATCA
98774045 TTATTTAAAATAAAAAATGATAAAAAT
1 TTATTT-AAATAAAAAATGAT-AAAAT
* *
98774072 TTA--TAAATAAATATTGAT-AAAT
1 TTATTTAAATAAAAAATGATAAAAT
98774094 TTATTTAAATA
1 TTATTTAAATA
98774105 TAATTAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
22 7 0.24
24 18 0.62
25 1 0.03
27 3 0.10
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (25 bp):
TTATTTAAATAAAAAATGATAAAAT
Found at i:98780683 original size:6 final size:6
Alignment explanation
Indices: 98780669--98780698 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
98780659 TTTTTTTTTT
98780669 TAATC- TAATCA TAATCA TAATCA TAATCA T
1 TAATCA TAATCA TAATCA TAATCA TAATCA T
98780699 GTTATGCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.37
Consensus pattern (6 bp):
TAATCA
Found at i:98783633 original size:13 final size:14
Alignment explanation
Indices: 98783605--98783637 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
98783595 CAGGTTTGCC
98783605 TTCCTTACTCTTTT
1 TTCCTTACTCTTTT
*
98783619 TTCCTTA-TTTTTT
1 TTCCTTACTCTTTT
98783632 TTCCTT
1 TTCCTT
98783638 TTTCTGGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (14 bp):
TTCCTTACTCTTTT
Found at i:98791586 original size:19 final size:18
Alignment explanation
Indices: 98791562--98791598 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
98791552 TTGGAATGTT
98791562 GCAAGGAGATGGCATAACA
1 GCAAGGAGATGGCA-AACA
98791581 GCAAGGAGATGGCAAACA
1 GCAAGGAGATGGCAAACA
98791599 AACACCTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.43, C:0.16, G:0.32, T:0.08
Consensus pattern (18 bp):
GCAAGGAGATGGCAAACA
Found at i:98801653 original size:13 final size:13
Alignment explanation
Indices: 98801635--98801660 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98801625 TATAAAAGGA
98801635 ATGACATTTTTCT
1 ATGACATTTTTCT
98801648 ATGACATTTTTCT
1 ATGACATTTTTCT
98801661 TTAGTTGACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (13 bp):
ATGACATTTTTCT
Found at i:98802086 original size:18 final size:18
Alignment explanation
Indices: 98802053--98802087 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
98802043 ATTTTACAAC
* *
98802053 TTGAATAATTCGAATAAT
1 TTGAATAAATCAAATAAT
98802071 TTGAATAAATCAAATAA
1 TTGAATAAATCAAATAA
98802088 CAAGTTGATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (18 bp):
TTGAATAAATCAAATAAT
Found at i:98803533 original size:39 final size:39
Alignment explanation
Indices: 98803479--98803604 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
98803469 TTCAGTGATG
98803479 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
98803518 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
98803557 TATATCCGGACTTAAGGCCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
98803596 TATGTCCGG
1 TATATCCGG
98803605 GCTAAAGTCC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:98803617 original size:39 final size:39
Alignment explanation
Indices: 98803479--98803674 Score: 166
Period size: 39 Copynumber: 5.0 Consensus size: 39
98803469 TTCAGTGATG
** *
98803479 TATATCCGGACTTAGGGT-CCGCAGGCTATGTGCTGGAAT
1 TATATCCGGAC-TAAAGTCCCGCAGGCTACGTGCTGGAAT
** *
98803518 TATATCCGGACTTAGGGT-CCGCAGGCTATGTGCTGGAAT
1 TATATCCGGAC-TAAAGTCCCGCAGGCTACGTGCTGGAAT
* * *
98803557 TATATCCGGACTTAAGGCCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTAAAGTCCCGCAGGCTACGTGCTGGAAT
* * * * *
98803596 TATGTCCGGGCTAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCCGGACTAAAGTCCCGCAGGCTACGTGCTGGAAT
** * *
98803635 TATA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGGTAAT
1 TATATCC-GGACTAAAGTCCCGCAGGCTACGTGCTGG-AAT
98803674 T
1 T
98803675 GGTTTCAAGT
Statistics
Matches: 133, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
38 10 0.08
39 123 0.92
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTAAAGTCCCGCAGGCTACGTGCTGGAAT
Found at i:98803618 original size:78 final size:78
Alignment explanation
Indices: 98803479--98803622 Score: 200
Period size: 78 Copynumber: 1.8 Consensus size: 78
98803469 TTCAGTGATG
* * * * **
98803479 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGCCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
98803544 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* *
98803557 TATATCCGGACTTAAGGCCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGCCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
98803621 CT
65 CT
98803623 TCGAGCTGGT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
77 4 0.07
78 53 0.93
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.25
Consensus pattern (78 bp):
TATATCCGGACTTAAGGCCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGTGCTGGAAT
Found at i:98803631 original size:78 final size:78
Alignment explanation
Indices: 98803479--98803642 Score: 199
Period size: 78 Copynumber: 2.1 Consensus size: 78
98803469 TTCAGTGATG
* * * * **
98803479 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGCCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
*
98803544 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* *
98803557 TATATCCGGACTTAAGGCCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGCCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
*
98803621 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
98803635 TATA-CCGG
1 TATATCCGG
98803643 GTTTAAATTC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
77 9 0.12
78 65 0.88
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (78 bp):
TATATCCGGACTTAAGGCCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGAGCTGGAAT
Found at i:98812771 original size:63 final size:64
Alignment explanation
Indices: 98812656--98812783 Score: 177
Period size: 63 Copynumber: 2.0 Consensus size: 64
98812646 TTGAGACTTT
* * * * * *
98812656 AACTCTCTGGGATACCATTGTTGCATTTCTTGTTTGAACATCACTTGGGACAACAAGTTAGGAC
1 AACTCTCTAGGATACCATTGTTCCATTCCTTGTTCGAACAGCACTTGAGACAACAAGTTAGGAC
* *
98812720 AACT-TCTAGGATGCCATTGTTCCATTCCTTGTTCGACCAGCACTTGAGACAACAAGTTAGGAC
1 AACTCTCTAGGATACCATTGTTCCATTCCTTGTTCGAACAGCACTTGAGACAACAAGTTAGGAC
98812783 A
1 A
98812784 TCATGTGGGA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
63 52 0.93
64 4 0.07
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (64 bp):
AACTCTCTAGGATACCATTGTTCCATTCCTTGTTCGAACAGCACTTGAGACAACAAGTTAGGAC
Found at i:98827294 original size:7 final size:7
Alignment explanation
Indices: 98827282--98827309 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
98827272 AAATGATGTT
98827282 ACATGAA
1 ACATGAA
98827289 ACATGAA
1 ACATGAA
98827296 ACATGAA
1 ACATGAA
98827303 ACATGAA
1 ACATGAA
98827310 TACTAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (7 bp):
ACATGAA
Found at i:98829500 original size:16 final size:16
Alignment explanation
Indices: 98829479--98829510 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
98829469 ATATACAAAA
98829479 ATATATATGTGTTTAT
1 ATATATATGTGTTTAT
*
98829495 ATATATGTGTGTTTAT
1 ATATATATGTGTTTAT
98829511 TTGAAGTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (16 bp):
ATATATATGTGTTTAT
Found at i:98829963 original size:24 final size:24
Alignment explanation
Indices: 98829936--98830267 Score: 243
Period size: 24 Copynumber: 13.9 Consensus size: 24
98829926 AAAATGACTT
*
98829936 TGGCACTATGTGTGCTAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
*
98829960 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
*
98829984 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * * **
98830008 TGTCAATATCTATGTAAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
*
98830033 T-GCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* *
98830056 TGGCACTATATGTGCGGATTT-ATA
1 TGGCACTATGTGTGCGAATTTGA-A
*
98830080 TGGCAC-ATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
98830103 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
* *
98830128 -GGCACTATGTGTGCAAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* *
98830151 TGGCACTATATGTGCGGATTT-ATA
1 TGGCACTATGTGTGCGAATTTGA-A
*
98830175 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
98830199 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
** *
98830224 T-GCACTATGTGTGCG-GGTTAACA
1 TGGCACTATGTGTGCGAATTTGA-A
*
98830247 TGGCACTATGGGTGCGAATTT
1 TGGCACTATGTGTGCGAATTT
98830268 CCTTGCTTGA
Statistics
Matches: 237, Mismatches: 52, Indels: 37
0.73 0.16 0.11
Matches are distributed among these distances:
21 1 0.00
22 3 0.01
23 24 0.10
24 195 0.82
25 11 0.05
26 3 0.01
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:98830239 original size:48 final size:48
Alignment explanation
Indices: 98829936--98830239 Score: 289
Period size: 48 Copynumber: 6.4 Consensus size: 48
98829926 AAAATGACTT
** * * * **
98829936 TGGCACTATGTGTGCTAATTTGAATGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGGATTTGAATGGCAATATGTATGTGAATTACTA
* * *
98829984 TGGCACTATGTGTGCGGATTTGAATGTCAATATCTATGTAAATTACTAA
1 TGGCACTATGTGTGCGGATTTGAATGGCAATATGTATGTGAATTACT-A
* * ** *
98830033 T-GCACTATGTGTGCGAATTTGTATGGCACTATATGTGCG-GATTTA-TA
1 TGGCACTATGTGTGCGGATTTGAATGGCA--ATATGTATGTGAATTACTA
*
98830080 TGGCAC-ATGTGTGCGGATTTGAATGTCAATATGTATGTGAATTACTA
1 TGGCACTATGTGTGCGGATTTGAATGGCAATATGTATGTGAATTACTA
* ** * ** *
98830127 AGGCACTATGTGTGCAAATTTGTATGGCACTATATGTGCG-GATTTA-TA
1 TGGCACTATGTGTGCGGATTTGAATGGCA--ATATGTATGTGAATTACTA
*
98830175 TGGCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGAATTACTAA
1 TGGCACTATGTGTGCGGATTTGAATGGCAATATGTATGTGAATTACT-A
98830224 T-GCACTATGTGTGCGG
1 TGGCACTATGTGTGCGG
98830240 GTTAACATGG
Statistics
Matches: 204, Mismatches: 40, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
45 7 0.03
46 12 0.06
47 33 0.16
48 126 0.62
49 13 0.06
50 13 0.06
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.37
Consensus pattern (48 bp):
TGGCACTATGTGTGCGGATTTGAATGGCAATATGTATGTGAATTACTA
Found at i:98837967 original size:399 final size:399
Alignment explanation
Indices: 98837229--98838035 Score: 1560
Period size: 399 Copynumber: 2.0 Consensus size: 399
98837219 CTTTTGTTTT
98837229 ACTAGTTATGCAGTTTGGTGATTTTGATTTGATTTTAGGAATGGATTGGTTGACCGAGCATAGAG
1 ACTAGTTATGCAGTTTGGTGATTTTGATTTGATTTTAGGAATGGATTGGTTGACCGAGCATAGAG
*
98837294 TTATCCTAGATTGTCGTAAATAGAAATTCTTTGTTTTAAGTCCAAATGCTGAAATCAGGAAAGTA
66 TTATCCTAGATTGTCGTAAAGAGAAATTCTTTGTTTTAAGTCCAAATGCTGAAATCAGGAAAGTA
98837359 AATGGCATCAGATTGAATGGTTCAACTCGAACTATTTCGTCAGTTTGAGCTAATAAACTCTTGAA
131 AATGGCATCAGATTGAATGGTTCAACTCGAACTATTTCGTCAGTTTGAGCTAATAAACTCTTGAA
*
98837424 CTAAGGCTACAGAGCTTTTTTAACATATGCTATTAACTCAAACTTAGATGAAAGTTAGATAAGCA
196 CTAAGGCTACAGAGCTTTTCTAACATATGCTATTAACTCAAACTTAGATGAAAGTTAGATAAGCA
98837489 AGATTTCAATCGTGTGCAAGTTTCCTAATGTGTTTCTTGAGGAACTGTCAAGACTACCCCCGATA
261 AGATTTCAATCGTGTGCAAGTTTCCTAATGTGTTTCTTGAGGAACTGTCAAGACTACCCCCGATA
*
98837554 GAGAAGTTGAGTTCGCAACTGAAGTTTTCCTTAGTATAGCTTTGGTATCAATTACTTTGTATCGA
326 GAGAAGTTGAGTTCGCAACTGAAGTCTTCCTTAGTATAGCTTTGGTATCAATTACTTTGTATCGA
98837619 ATAACGCTG
391 ATAACGCTG
98837628 ACTAGTTATGCAGTTTGGTGATTTTGATTTGATTTTAGGAATGGATTGGTTGACCGAGCATAGAG
1 ACTAGTTATGCAGTTTGGTGATTTTGATTTGATTTTAGGAATGGATTGGTTGACCGAGCATAGAG
98837693 TTATCCTAGATTGTCGTAAAGAGAAATTCTTTGTTTTAAGTCCAAATGCTGAAATCAGGAAAGTA
66 TTATCCTAGATTGTCGTAAAGAGAAATTCTTTGTTTTAAGTCCAAATGCTGAAATCAGGAAAGTA
*
98837758 AATGGCATCAGATTGAGTGGTTCAACTCGAACTATTTCGTCAGTTTGAGCTAATAAACTCTTGAA
131 AATGGCATCAGATTGAATGGTTCAACTCGAACTATTTCGTCAGTTTGAGCTAATAAACTCTTGAA
98837823 CTAAGGCTACAGAGCTTTTCTAACATATGCTATTAACTCAAACTTAGATGAAAGTTAGATAAGCA
196 CTAAGGCTACAGAGCTTTTCTAACATATGCTATTAACTCAAACTTAGATGAAAGTTAGATAAGCA
*
98837888 AGATTTCAATCGTGTGCAAGTTTCCTAATGTGTTTCTTGAGGAACTGTCAGGACTACCCCCGATA
261 AGATTTCAATCGTGTGCAAGTTTCCTAATGTGTTTCTTGAGGAACTGTCAAGACTACCCCCGATA
98837953 GAGAAGTTGAGTTCGCAACTGAAGTCTTCCTTAGTATAGCTTTGGTATCAATTACTTTGTATCGA
326 GAGAAGTTGAGTTCGCAACTGAAGTCTTCCTTAGTATAGCTTTGGTATCAATTACTTTGTATCGA
98838018 ATAACGCTG
391 ATAACGCTG
98838027 ACTGAGTTA
1 ACT-AGTTA
98838036 AAGGAGTTAA
Statistics
Matches: 402, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
399 397 0.99
400 5 0.01
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (399 bp):
ACTAGTTATGCAGTTTGGTGATTTTGATTTGATTTTAGGAATGGATTGGTTGACCGAGCATAGAG
TTATCCTAGATTGTCGTAAAGAGAAATTCTTTGTTTTAAGTCCAAATGCTGAAATCAGGAAAGTA
AATGGCATCAGATTGAATGGTTCAACTCGAACTATTTCGTCAGTTTGAGCTAATAAACTCTTGAA
CTAAGGCTACAGAGCTTTTCTAACATATGCTATTAACTCAAACTTAGATGAAAGTTAGATAAGCA
AGATTTCAATCGTGTGCAAGTTTCCTAATGTGTTTCTTGAGGAACTGTCAAGACTACCCCCGATA
GAGAAGTTGAGTTCGCAACTGAAGTCTTCCTTAGTATAGCTTTGGTATCAATTACTTTGTATCGA
ATAACGCTG
Found at i:98840994 original size:21 final size:21
Alignment explanation
Indices: 98840970--98841011 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
98840960 TGTAAAAGAA
98840970 TGTATGATTCATGTATGTGAG
1 TGTATGATTCATGTATGTGAG
98840991 TGTATGATTCATGTATGTGAG
1 TGTATGATTCATGTATGTGAG
98841012 CATGCGAGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.29, T:0.43
Consensus pattern (21 bp):
TGTATGATTCATGTATGTGAG
Found at i:98843365 original size:14 final size:14
Alignment explanation
Indices: 98843346--98843376 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
98843336 GAGATGTTTA
98843346 AAGACTATTTTGTT
1 AAGACTATTTTGTT
98843360 AAGACTATTTTGTT
1 AAGACTATTTTGTT
98843374 AAG
1 AAG
98843377 TGATTTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.45
Consensus pattern (14 bp):
AAGACTATTTTGTT
Found at i:98853240 original size:31 final size:32
Alignment explanation
Indices: 98853205--98853267 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
98853195 TTTTAATTTT
*
98853205 ATATTT-ATCTAATT-AACTTTTTTAATATAAA
1 ATATTTGATC-AATTGAACTTATTTAATATAAA
* *
98853236 ATATTTGATCCATTGAACTTATTTAATTTAAA
1 ATATTTGATCAATTGAACTTATTTAATATAAA
98853268 TTTGAAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 9 0.33
32 18 0.67
ACGTcount: A:0.40, C:0.08, G:0.03, T:0.49
Consensus pattern (32 bp):
ATATTTGATCAATTGAACTTATTTAATATAAA
Found at i:98853542 original size:28 final size:28
Alignment explanation
Indices: 98853502--98853560 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
98853492 AATCAAGAGT
98853502 AAAATCTGATTTGTCATTCTCCTATTGG
1 AAAATCTGATTTGTCATTCTCCTATTGG
98853530 AAAATCTGATTTGTCATTCTCCTATTGG
1 AAAATCTGATTTGTCATTCTCCTATTGG
98853558 AAA
1 AAA
98853561 GGGATAGGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (28 bp):
AAAATCTGATTTGTCATTCTCCTATTGG
Found at i:98853708 original size:5 final size:5
Alignment explanation
Indices: 98853698--98853734 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
98853688 TTGTACCTTC
98853698 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TT
98853735 TAATGAGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:98855263 original size:26 final size:26
Alignment explanation
Indices: 98855234--98855283 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
98855224 TTTTTTAAAA
98855234 GTATGCCCGTAATGTGGCTTTTCTCT
1 GTATGCCCGTAATGTGGCTTTTCTCT
*
98855260 GTATGCCCGTAGTGTGGCTTTTCT
1 GTATGCCCGTAATGTGGCTTTTCT
98855284 GTTCTTAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.10, C:0.22, G:0.26, T:0.42
Consensus pattern (26 bp):
GTATGCCCGTAATGTGGCTTTTCTCT
Found at i:98866742 original size:31 final size:31
Alignment explanation
Indices: 98866658--98866742 Score: 77
Period size: 31 Copynumber: 2.8 Consensus size: 31
98866648 TCGTAAGTAC
* *
98866658 TTTTATTTTTACAAATTT-AGAATTTAATCTT
1 TTTTATTTTT-CATATTTAAAAATTTAATCTT
** * *
98866689 TTTTGCTTTT-ATTTTTAGAAATTTAAAT-TT
1 TTTTATTTTTCATATTTAAAAATTT-AATCTT
98866719 TTTTATTTTTCATATTTAAAAATT
1 TTTTATTTTTCATATTTAAAAATT
98866743 CAAGTTCAAT
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
29 4 0.10
30 15 0.37
31 22 0.54
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.61
Consensus pattern (31 bp):
TTTTATTTTTCATATTTAAAAATTTAATCTT
Found at i:98867234 original size:21 final size:20
Alignment explanation
Indices: 98867210--98867270 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
98867200 TTTCATAATA
*
98867210 TTAACAATTAAACTTAAAATT
1 TTAA-AATTAAATTTAAAATT
* *
98867231 TTAAATTTTAAATTTTAAATT
1 TTAAA-ATTAAATTTAAAATT
98867252 TTAAAAATTTAAATTTAAA
1 TT-AAAA-TTAAATTTAAA
98867271 TTAACTAACA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
20 1 0.03
21 18 0.56
22 13 0.41
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
TTAAAATTAAATTTAAAATT
Found at i:98867267 original size:6 final size:7
Alignment explanation
Indices: 98867226--98867272 Score: 69
Period size: 7 Copynumber: 6.7 Consensus size: 7
98867216 ATTAAACTTA
98867226 AAATTTT
1 AAATTTT
98867233 AAATTTT
1 AAATTTT
98867240 AAATTTT
1 AAATTTT
98867247 AAATTTT
1 AAATTTT
*
98867254 AAAAATTT
1 -AAATTTT
98867262 AAA-TTT
1 AAATTTT
98867268 AAATT
1 AAATT
98867273 AACTAACATA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
6 6 0.16
7 25 0.68
8 6 0.16
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (7 bp):
AAATTTT
Found at i:98867271 original size:21 final size:21
Alignment explanation
Indices: 98867217--98867272 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
98867207 ATATTAACAA
* *
98867217 TTAAACTTAAAATTTTAAATT
1 TTAAACTTTAAATTTTAAAAT
*
98867238 TTAAATTTTAAATTTTAAAAAT
1 TTAAACTTTAAATTTT-AAAAT
98867260 TTAAA-TTTAAATT
1 TTAAACTTTAAATT
98867273 AACTAACATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 22 0.71
22 9 0.29
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTAAACTTTAAATTTTAAAAT
Found at i:98870865 original size:30 final size:30
Alignment explanation
Indices: 98870819--98870903 Score: 118
Period size: 30 Copynumber: 2.9 Consensus size: 30
98870809 AGGTAACCTA
* *
98870819 ATATAA-GTCAGCTTGTGTGAGCAACATTG
1 ATATAATGTCAACTTGTGTGAGCAACACTG
* *
98870848 ATATAATTTCAACTTGTGTGAGCAACCCTG
1 ATATAATGTCAACTTGTGTGAGCAACACTG
*
98870878 ATATAATGTCAGCTTGTGTGAGCAAC
1 ATATAATGTCAACTTGTGTGAGCAAC
98870904 TTAATCACTC
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
29 6 0.12
30 43 0.88
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (30 bp):
ATATAATGTCAACTTGTGTGAGCAACACTG
Found at i:98871151 original size:47 final size:47
Alignment explanation
Indices: 98871082--98871175 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
98871072 TATGACTAAC
98871082 CTATTTGAATGTTAATGTTGGTAAGTATTGTATTTTCATTTGAACTT
1 CTATTTGAATGTTAATGTTGGTAAGTATTGTATTTTCATTTGAACTT
98871129 CTATTTGAATGTTAATGTTGGTAAGTATTGTATTTTCATTTGAACTT
1 CTATTTGAATGTTAATGTTGGTAAGTATTGTATTTTCATTTGAACTT
98871176 ACTAAGCATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.26, C:0.06, G:0.17, T:0.51
Consensus pattern (47 bp):
CTATTTGAATGTTAATGTTGGTAAGTATTGTATTTTCATTTGAACTT
Found at i:98871191 original size:47 final size:46
Alignment explanation
Indices: 98871088--98871192 Score: 140
Period size: 47 Copynumber: 2.2 Consensus size: 46
98871078 TAACCTATTT
* *
98871088 GAATGTTAATGTTGGTAAGTATTGTATTTTCATTTGAACTTCTATTT
1 GAATCTTAATGTTGGTAAGTATTGTATTTTCATTTGAACTTCTA-TA
*
98871135 GAATGTTAATGTTGGTAAGTATTGTATTTTCATTTGAACTTACTA-A
1 GAATCTTAATGTTGGTAAGTATTGTATTTTCATTTGAACTT-CTATA
*
98871181 GCATTCTTAATG
1 G-AATCTTAATG
98871193 CTTACTCTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
46 1 0.02
47 49 0.92
48 3 0.06
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.48
Consensus pattern (46 bp):
GAATCTTAATGTTGGTAAGTATTGTATTTTCATTTGAACTTCTATA
Found at i:98872567 original size:39 final size:39
Alignment explanation
Indices: 98872524--98872600 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
98872514 CAGAATGCAC
*
98872524 CACAAAGGCTTCACAAAATATACCATGAAA-GCATCACAT
1 CACAAAGGCTTCACAAAATATACCA-CAAAGGCATCACAT
* *
98872563 CACAAAGGCTTCACAGAATATGCCACAAAGGCATCACA
1 CACAAAGGCTTCACAAAATATACCACAAAGGCATCACA
98872601 GAATACACCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 3 0.09
39 31 0.91
ACGTcount: A:0.44, C:0.27, G:0.13, T:0.16
Consensus pattern (39 bp):
CACAAAGGCTTCACAAAATATACCACAAAGGCATCACAT
Found at i:98872593 original size:23 final size:23
Alignment explanation
Indices: 98872563--98872627 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
98872553 AGCATCACAT
**
98872563 CACAAAGGCTTCACAGAATATGC
1 CACAAAGGCTTCACAGAATACAC
*
98872586 CACAAAGGCATCACAGAATACAC
1 CACAAAGGCTTCACAGAATACAC
*
98872609 CACAAAGACTTCACAGAAT
1 CACAAAGGCTTCACAGAAT
98872628 TCCTTGTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.45, C:0.28, G:0.14, T:0.14
Consensus pattern (23 bp):
CACAAAGGCTTCACAGAATACAC
Found at i:98874056 original size:24 final size:21
Alignment explanation
Indices: 98874004--98874067 Score: 67
Period size: 24 Copynumber: 2.8 Consensus size: 21
98873994 ACACACATAT
98874004 ATATATAAAACATATAATACTAA
1 ATAT-TAAAA-ATATAATACTAA
98874027 AT-TTAAAAATATATATACAATAA
1 ATATTAAAAATATA-ATAC--TAA
98874050 ATATTAAAAATAATAATA
1 ATATTAAAAAT-ATAATA
98874068 GTATAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
20 5 0.14
21 9 0.25
22 1 0.03
23 7 0.19
24 11 0.31
25 3 0.08
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (21 bp):
ATATTAAAAATATAATACTAA
Found at i:98874074 original size:24 final size:23
Alignment explanation
Indices: 98874009--98874061 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 23
98873999 CATATATATA
98874009 TAAAACATATA-ATAC--TAAATT
1 TAAAA-ATATATATACAATAAATT
98874030 TAAAAATATATATACAATAAATAT
1 TAAAAATATATATACAATAAAT-T
98874054 TAAAAATA
1 TAAAAATA
98874062 ATAATAGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.18
21 9 0.32
23 5 0.18
24 9 0.32
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (23 bp):
TAAAAATATATATACAATAAATT
Found at i:98874094 original size:22 final size:19
Alignment explanation
Indices: 98874045--98874086 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
98874035 ATATATATAC
* *
98874045 AATAAATATTAAAAATAAT
1 AATAGATATAAAAAATAAT
98874064 AATAG-TATAAAAAACTAAT
1 AATAGATATAAAAAA-TAAT
98874083 AATA
1 AATA
98874087 ACGATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
AATAGATATAAAAAATAAT
Found at i:98874183 original size:25 final size:25
Alignment explanation
Indices: 98874096--98874209 Score: 80
Period size: 25 Copynumber: 4.7 Consensus size: 25
98874086 AACGATATAT
*
98874096 AAATATATACAT-ATAT-GT-ATTA
1 AAATATGTACATAATATAGTAATTA
* * *
98874118 AAATATATACGTAATAATAGGAA-T-
1 AAATATGTACATAAT-ATAGTAATTA
* *
98874142 AAAGA-GTATATATATATAG-AATTAA
1 AAATATGTACATA-ATATAGTAATT-A
*
98874167 AAATATGTACATAATATAGTTATTA
1 AAATATGTACATAATATAGTAATTA
*
98874192 AAATATTTACATAATATA
1 AAATATGTACATAATATA
98874210 TACATATTAG
Statistics
Matches: 72, Mismatches: 10, Indels: 17
0.73 0.10 0.17
Matches are distributed among these distances:
22 13 0.18
23 11 0.15
24 8 0.11
25 30 0.42
26 10 0.14
ACGTcount: A:0.53, C:0.04, G:0.08, T:0.36
Consensus pattern (25 bp):
AAATATGTACATAATATAGTAATTA
Found at i:98874218 original size:27 final size:26
Alignment explanation
Indices: 98874153--98874224 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 26
98874143 AAGAGTATAT
98874153 ATATATAGA-ATTAAAAATATGTACATA
1 ATATATA-ATATT-AAAATATGTACATA
*
98874180 ATATAGT--TATTAAAATATTTACATA
1 ATATA-TAATATTAAAATATGTACATA
98874205 ATATATACATATTAGAAATA
1 ATATATA-ATATTA-AAATA
98874225 AAAAAAACGA
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
24 1 0.03
25 18 0.47
26 3 0.08
27 10 0.26
28 6 0.16
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.38
Consensus pattern (26 bp):
ATATATAATATTAAAATATGTACATA
Found at i:98874697 original size:3 final size:3
Alignment explanation
Indices: 98874689--98874783 Score: 70
Period size: 3 Copynumber: 31.7 Consensus size: 3
98874679 CGAATCATAG
** *
98874689 TAA TAA TAA TAA TAA TGAA -AA TAA GGA TAA TAT TAA TAA TACA TTAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TA-A -TAA
* * * * *
98874736 -AA T-A CAA TAA CAA CAG TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
98874782 TA
1 TA
98874784 TATGAGTGAT
Statistics
Matches: 72, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
2 5 0.07
3 61 0.85
4 4 0.06
5 2 0.03
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:98877448 original size:49 final size:49
Alignment explanation
Indices: 98877308--98877450 Score: 204
Period size: 46 Copynumber: 3.0 Consensus size: 49
98877298 TCATCTTTGG
*
98877308 AAGGGTTTTACAATCATCCCGACCCAAATAAGATTAGACTCAAACT-AC
1 AAGGGTTTTACAATCATCCCGACCCAAATAAGATTAGACTCAAACTGCC
* * * *
98877356 AAGGGTTCTACAATCAT--AGACCCAAATAAGATTACACTTAAACTGCC
1 AAGGGTTTTACAATCATCCCGACCCAAATAAGATTAGACTCAAACTGCC
98877403 AAGGGTTTTACAATCATCCCCG-CCCAAATAAGATTAGACTCAAACTGC
1 AAGGGTTTTACAATCAT-CCCGACCCAAATAAGATTAGACTCAAACTGC
98877451 AACTGCAAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
46 24 0.29
47 17 0.21
48 16 0.20
49 24 0.29
50 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.23
Consensus pattern (49 bp):
AAGGGTTTTACAATCATCCCGACCCAAATAAGATTAGACTCAAACTGCC
Found at i:98878880 original size:22 final size:20
Alignment explanation
Indices: 98878847--98878890 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
98878837 AGGCGCGACC
98878847 TATTTTTTAATAATATAATT
1 TATTTTTTAATAATATAATT
*
98878867 TATTTTTTAA-AATATTA-T
1 TATTTTTTAATAATATAATT
98878885 TATTTT
1 TATTTT
98878891 ATTATATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 6 0.26
20 10 0.43
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTTTTTAATAATATAATT
Found at i:98880259 original size:11 final size:11
Alignment explanation
Indices: 98880224--98880251 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
98880214 GAGAGTAAGA
98880224 AATTTTAATGT
1 AATTTTAATGT
98880235 AATTTTAATGT
1 AATTTTAATGT
98880246 AATTTT
1 AATTTT
98880252 GATATAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (11 bp):
AATTTTAATGT
Found at i:98881877 original size:6 final size:6
Alignment explanation
Indices: 98881866--98881911 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
98881856 CACCAGCTCG
* * * *
98881866 GAGCCA GAGCCA GAGCCA GAGCCA GAGTCA GTGCCG GACCCA GAGC
1 GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGCCA GAGC
98881912 GGCGGCCAGA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.28, C:0.33, G:0.35, T:0.04
Consensus pattern (6 bp):
GAGCCA
Found at i:98886240 original size:20 final size:19
Alignment explanation
Indices: 98886197--98886239 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
98886187 AAAATATAAT
98886197 AAAATAATAATATTTTAAA
1 AAAATAATAATATTTTAAA
*
98886216 AAAATAAATTATATTATTAAA
1 AAAAT-AATAATATT-TTAAA
98886237 AAA
1 AAA
98886240 TGGGTCGCGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 8 0.38
21 8 0.38
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATAATAATATTTTAAA
Found at i:98886696 original size:28 final size:29
Alignment explanation
Indices: 98886634--98886696 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
98886624 AAATTTTTAA
* *
98886634 AAATATA-TTTATAAAATATATTATTTGC
1 AAATATATTTTATAAAATATATTATGTCC
98886662 --ATCATATTTTATAAAATATATT-TGTCC
1 AAAT-ATATTTTATAAAATATATTATGTCC
98886689 AAATATAT
1 AAATATAT
98886697 AAAATAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
26 2 0.07
27 6 0.21
28 19 0.66
29 2 0.07
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.46
Consensus pattern (29 bp):
AAATATATTTTATAAAATATATTATGTCC
Found at i:98886765 original size:24 final size:24
Alignment explanation
Indices: 98886708--98886755 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
98886698 AAATAAACAA
98886708 AATCT-AAAATATATAAAACGTAT
1 AATCTAAAAATATATAAAACGTAT
98886731 AATCTAAAAATATAT-AAACGTAT
1 AATCTAAAAATATATAAAACGTAT
98886754 AA
1 AA
98886756 CACATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.29
Consensus pattern (24 bp):
AATCTAAAAATATATAAAACGTAT
Found at i:98889520 original size:15 final size:17
Alignment explanation
Indices: 98889500--98889544 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
98889490 ATTCATTATC
98889500 TTTGTA-AAA-AATATA
1 TTTGTATAAATAATATA
*
98889515 TTTGTATAAATATTATA
1 TTTGTATAAATAATATA
*
98889532 TTT-TTTAAATAAT
1 TTTGTATAAATAAT
98889545 TTTTTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 6 0.24
16 11 0.44
17 8 0.32
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (17 bp):
TTTGTATAAATAATATA
Found at i:98896156 original size:3 final size:3
Alignment explanation
Indices: 98896148--98896176 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
98896138 TTAGGCATCT
98896148 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
98896177 GTGAGTGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:98896526 original size:19 final size:17
Alignment explanation
Indices: 98896505--98896549 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
98896495 ATATCATATT
98896505 AATAAT-TAAATTTTTA
1 AATAATATAAATTTTTA
*
98896521 AATAATATATATTTTTAA
1 AATAATATAAATTTTT-A
98896539 AATATATATAA
1 AATA-ATATAA
98896550 TAAAATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 8 0.33
18 5 0.21
19 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AATAATATAAATTTTTA
Found at i:98896536 original size:17 final size:16
Alignment explanation
Indices: 98896503--98896547 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
98896493 AAATATCATA
*
98896503 TTAATAAT-TAAATTT
1 TTAATAATATATATTT
98896518 TTAAATAATATATATTT
1 TT-AATAATATATATTT
98896535 TTAA-AATATATAT
1 TTAATAATATATAT
98896548 AATAAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 11 0.41
16 8 0.30
17 8 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATAATATATATTT
Found at i:98896573 original size:25 final size:27
Alignment explanation
Indices: 98896512--98896574 Score: 78
Period size: 25 Copynumber: 2.4 Consensus size: 27
98896502 ATTAATAATT
*
98896512 AAATTTTTA-AATAATATATATTTTTA
1 AAATTTTTATAATAAAATATATTTTTA
* *
98896538 AAATATATATAATAAAAT-TA-TTTTA
1 AAATTTTTATAATAAAATATATTTTTA
98896563 AAATTTTTATAA
1 AAATTTTTATAA
98896575 AAATAAAGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
25 15 0.48
26 9 0.29
27 7 0.23
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (27 bp):
AAATTTTTATAATAAAATATATTTTTA
Found at i:98896700 original size:17 final size:18
Alignment explanation
Indices: 98896667--98896701 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
98896657 ATTTTATTCT
98896667 AAGTATTAAATAATAATA
1 AAGTATTAAATAATAATA
98896685 AAGTATTAAA-AATAATA
1 AAGTATTAAATAATAATA
98896702 CCCATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
AAGTATTAAATAATAATA
Found at i:98897910 original size:16 final size:16
Alignment explanation
Indices: 98897881--98897920 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
98897871 AATTATCATG
98897881 TATATACATACATATA
1 TATATACATACATATA
* *
98897897 TATATTCATGCATATA
1 TATATACATACATATA
98897913 TATATACA
1 TATATACA
98897921 CCTCATAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.40
Consensus pattern (16 bp):
TATATACATACATATA
Found at i:98899252 original size:18 final size:18
Alignment explanation
Indices: 98899231--98899290 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
98899221 AATCGGTTAA
*
98899231 TCAGTAATATTCATTTAT
1 TCAGTAATAGTCATTTAT
*
98899249 TCAGT-ATCAGTCGTTTAT
1 TCAGTAAT-AGTCATTTAT
* * *
98899267 TCTGTAACAGTCAATTAT
1 TCAGTAATAGTCATTTAT
98899285 TCAGTA
1 TCAGTA
98899291 GCAGACAGTC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
17 2 0.06
18 30 0.91
19 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (18 bp):
TCAGTAATAGTCATTTAT
Found at i:98900497 original size:17 final size:19
Alignment explanation
Indices: 98900463--98900500 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
98900453 AAACCTTTAA
98900463 TTTTCTCTTTTCTTCTTTC
1 TTTTCTCTTTTCTTCTTTC
98900482 TTTTCTC-TTT-TTCTTTC
1 TTTTCTCTTTTCTTCTTTC
98900499 TT
1 TT
98900501 CCTTCCCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 3 0.16
19 7 0.37
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCTCTTTTCTTCTTTC
Found at i:98901301 original size:43 final size:43
Alignment explanation
Indices: 98901240--98901340 Score: 184
Period size: 43 Copynumber: 2.3 Consensus size: 43
98901230 TAATCTCGTC
*
98901240 GTTGAAATCGACCTTTGGCTATGGATACACAGCAGTACTTGCA
1 GTTGAAATCGACCTTTGGCTATGGATACACAGCAGTACCTGCA
98901283 GTTGAAATCGACCTTTGGCTATGGATACACAGCAGTACCTGCA
1 GTTGAAATCGACCTTTGGCTATGGATACACAGCAGTACCTGCA
*
98901326 GTTGAAATCTACCTT
1 GTTGAAATCGACCTT
98901341 CGGTTGTGAG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (43 bp):
GTTGAAATCGACCTTTGGCTATGGATACACAGCAGTACCTGCA
Found at i:98902016 original size:17 final size:17
Alignment explanation
Indices: 98901994--98902036 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
98901984 TGTAGGGTGG
* **
98901994 TTGTGTGGCCCATATGC
1 TTGTGTGGCCCACACAC
*
98902011 TTGTGTAGCCCACACAC
1 TTGTGTGGCCCACACAC
98902028 TTGTGTGGC
1 TTGTGTGGC
98902037 TGACCGTGTG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.14, C:0.26, G:0.28, T:0.33
Consensus pattern (17 bp):
TTGTGTGGCCCACACAC
Found at i:98904130 original size:27 final size:26
Alignment explanation
Indices: 98904070--98904131 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
98904060 ATAAGACTCC
98904070 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * * *
98904096 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
98904124 ATTTTATT
1 ATTTTATT
98904132 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 14 0.48
28 13 0.45
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:98906981 original size:23 final size:23
Alignment explanation
Indices: 98906954--98906998 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
98906944 TGCACTTCAA
*
98906954 TTTTAAATTTATA-TTAACTATT
1 TTTTTAATTTATATTTAACTATT
*
98906976 TTTTTATTTTATATTTAACTATT
1 TTTTTAATTTATATTTAACTATT
98906999 GCAATACATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTTAATTTATATTTAACTATT
Found at i:98914701 original size:20 final size:20
Alignment explanation
Indices: 98914645--98914712 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
98914635 ATTTTAGAAT
98914645 TTTTAGAATTTTTATAAA-TA
1 TTTT-GAATTTTTATAAATTA
*
98914665 TTTTCAA-TTTTATAAATTA
1 TTTTGAATTTTTATAAATTA
98914684 TTTTGAATTTTTGA-AAATTA
1 TTTTGAATTTTT-ATAAATTA
98914704 TTTTGAATT
1 TTTTGAATT
98914713 ATTTTGTAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
18 9 0.21
19 10 0.23
20 23 0.53
21 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.57
Consensus pattern (20 bp):
TTTTGAATTTTTATAAATTA
Found at i:98917077 original size:17 final size:18
Alignment explanation
Indices: 98917051--98917084 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
98917041 CCCAAAAGAA
*
98917051 TTATTTAAT-ATTTTTTG
1 TTATTAAATAATTTTTTG
98917068 TTATTAAATAATTTTTT
1 TTATTAAATAATTTTTT
98917085 ACCTAACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTATTAAATAATTTTTTG
Found at i:98921346 original size:133 final size:133
Alignment explanation
Indices: 98921093--98921348 Score: 372
Period size: 133 Copynumber: 1.9 Consensus size: 133
98921083 TAGAACATAC
* *
98921093 GAGTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAAACGAGAAATAGCAACCCATCACGTTA
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGCAAACGAGAAATAGCAACCCAGCACGTTA
* * * *
98921158 GGGCACGATTCCGCGAATTGCCAAATATCACACATCGTCTTCGTTTAAGGGAATTTTTTAAAAGA
66 GGGCACGATTCCGCAAATTGCCAAATATCAAACATCGTCTTAGTTTAAGAGAATTTTTTAAAAGA
98921223 CAT
131 CAT
* * * *
98921226 GAGTGAAATTTTGAAGTGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAGCACGTTA
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGCAAACGAGAAATAGCAACCCAGCACGTTA
* *
98921291 GGGCACGATTCCGCAAATTGCCAAATATCAAATC-TCGTCTTTATTTTAA-ATAATTTTT
66 GGGCACGATTCCGCAAATTGCCAAATATCAAA-CATCGTC-TTAGTTTAAGAGAATTTTT
98921349 GAATGAATGA
Statistics
Matches: 109, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
133 101 0.93
134 8 0.07
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (133 bp):
GAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGCAAACGAGAAATAGCAACCCAGCACGTTA
GGGCACGATTCCGCAAATTGCCAAATATCAAACATCGTCTTAGTTTAAGAGAATTTTTTAAAAGA
CAT
Found at i:98926155 original size:23 final size:24
Alignment explanation
Indices: 98926124--98926180 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 24
98926114 CAGAGACCCA
*
98926124 AAAAGAAACAGAAAATAAAAA-CC
1 AAAATAAACAGAAAATAAAAATCC
*
98926147 AAAATAAACA-AAAATAAAAATTC
1 AAAATAAACAGAAAATAAAAATCC
*
98926170 AAAATCAACAG
1 AAAATAAACAG
98926181 TCCAAATGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.34
23 19 0.66
ACGTcount: A:0.72, C:0.12, G:0.05, T:0.11
Consensus pattern (24 bp):
AAAATAAACAGAAAATAAAAATCC
Found at i:98926163 original size:22 final size:23
Alignment explanation
Indices: 98926124--98926166 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
98926114 CAGAGACCCA
98926124 AAAAGAAACAGAAAATAAAAACC
1 AAAAGAAACAGAAAATAAAAACC
*
98926147 AAAATAAACA-AAAATAAAAA
1 AAAAGAAACAGAAAATAAAAA
98926167 TTCAAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.79, C:0.09, G:0.05, T:0.07
Consensus pattern (23 bp):
AAAAGAAACAGAAAATAAAAACC
Found at i:98927502 original size:15 final size:15
Alignment explanation
Indices: 98927464--98927511 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
98927454 CTTATATATA
*
98927464 TTATCTATTATTACTA
1 TTATCTATTATTA-TT
*
98927480 TCAT-TATTATTATT
1 TTATCTATTATTATT
98927494 TTATCTATTATT-TT
1 TTATCTATTATTATT
98927508 TTAT
1 TTAT
98927512 TTATATATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 10 0.36
15 15 0.54
16 3 0.11
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATCTATTATTATT
Found at i:98932637 original size:31 final size:29
Alignment explanation
Indices: 98932587--98932644 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
98932577 TATACACATG
* *
98932587 AAACTTTGATTGTAGTTCAAATGTATATATA
1 AAACTTTAATTGTAATTC-AAT-TATATATA
*
98932618 AAACTTTAATTTTAATTCAATTATATA
1 AAACTTTAATTGTAATTCAATTATATA
98932645 CATTTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 6 0.25
30 3 0.12
31 15 0.62
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (29 bp):
AAACTTTAATTGTAATTCAATTATATATA
Found at i:98932804 original size:30 final size:28
Alignment explanation
Indices: 98932768--98932846 Score: 77
Period size: 28 Copynumber: 2.6 Consensus size: 28
98932758 GAATTTGACT
*
98932768 AAATCAAAATTACATGTATAAAATTGCACA
1 AAATC-AAATT-CATATATAAAATTGCACA
* *
98932798 AAATCAAGTTCTTATATAAAATTGCACATA
1 AAATCAAATTCATATATAAAATTGCAC--A
*
98932828 AAACCAAAGTTCATATATA
1 AAATCAAA-TTCATATATA
98932847 GTTTGAAGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
28 15 0.38
29 4 0.10
30 12 0.30
31 9 0.22
ACGTcount: A:0.51, C:0.14, G:0.06, T:0.29
Consensus pattern (28 bp):
AAATCAAATTCATATATAAAATTGCACA
Found at i:98932845 original size:31 final size:28
Alignment explanation
Indices: 98932784--98932846 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 28
98932774 AAATTACATG
* *
98932784 TATAAAATTGCACAAAATCAAGTTCTTA
1 TATAAAATTGCACAAAACCAAGTTCATA
98932812 TATAAAATTGCACATAAAACCAAAGTTCATA
1 TATAAAATTGCAC--AAAACC-AAGTTCATA
98932843 TATA
1 TATA
98932847 GTTTGAAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 13 0.43
30 5 0.17
31 12 0.40
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.30
Consensus pattern (28 bp):
TATAAAATTGCACAAAACCAAGTTCATA
Done.