Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 313 of 325
Found at i:98942383 original size:20 final size:20
Alignment explanation
Indices: 98942358--98942407 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
98942348 TGGCTTAAAA
98942358 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
98942378 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
98942395 GTGGTAGTGGATT
1 TTGGTAGTGGATT
98942408 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:98947021 original size:20 final size:20
Alignment explanation
Indices: 98946996--98947045 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
98946986 TGGCTTAAAA
98946996 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
98947016 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
98947033 GTGGTAGTGGATT
1 TTGGTAGTGGATT
98947046 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:98948373 original size:3 final size:3
Alignment explanation
Indices: 98948365--98948403 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
98948355 ACTCTAACTG
98948365 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
98948404 TCTCACAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:98964135 original size:32 final size:32
Alignment explanation
Indices: 98964094--98964156 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
98964084 GTTGTCAAAA
98964094 CCAATATTGATTTGGGAAAAAAAGAATGCTAC
1 CCAATATTGATTTGGGAAAAAAAGAATGCTAC
98964126 CCAATATTGATTTGGGAAAAAAAGAATGCTA
1 CCAATATTGATTTGGGAAAAAAAGAATGCTA
98964157 TGTGGAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.25
Consensus pattern (32 bp):
CCAATATTGATTTGGGAAAAAAAGAATGCTAC
Found at i:98967904 original size:15 final size:16
Alignment explanation
Indices: 98967878--98967910 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
98967868 TTAAAAATTG
98967878 TAAAACAATTCAAAAA
1 TAAAACAATTCAAAAA
98967894 TAAAA-AATTCAAAAA
1 TAAAACAATTCAAAAA
98967909 TA
1 TA
98967911 TAGAAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.21
Consensus pattern (16 bp):
TAAAACAATTCAAAAA
Found at i:98971377 original size:19 final size:20
Alignment explanation
Indices: 98971330--98971378 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
98971320 TTTATTTGAA
* *
98971330 GTACTGGTACTTTCTTTTAG
1 GTACTGATACTTTCATTTAG
98971350 GTA-TCGATACTTTCATTT-G
1 GTACT-GATACTTTCATTTAG
98971369 GTACTGATAC
1 GTACTGATAC
98971379 CATTTTGACA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.20, C:0.16, G:0.18, T:0.45
Consensus pattern (20 bp):
GTACTGATACTTTCATTTAG
Found at i:98975797 original size:38 final size:38
Alignment explanation
Indices: 98975746--98975822 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
98975736 GATCAAAATG
98975746 TGCCTTGGTCACAATCTTCTTTATGTAGTCCGTAAGAC
1 TGCCTTGGTCACAATCTTCTTTATGTAGTCCGTAAGAC
*
98975784 TGCCTTGGTCACAATCTTCTTTATGTAGTCCGTGAGAC
1 TGCCTTGGTCACAATCTTCTTTATGTAGTCCGTAAGAC
98975822 T
1 T
98975823 AACATTTTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (38 bp):
TGCCTTGGTCACAATCTTCTTTATGTAGTCCGTAAGAC
Found at i:98979548 original size:17 final size:15
Alignment explanation
Indices: 98979528--98979571 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
98979518 AATAGACCAG
98979528 AAATTTTAATTTCTATA
1 AAATTTTAATTT-TA-A
98979545 AAATTTTAAATTTTAA
1 AAATTTT-AATTTTAA
*
98979561 AAATATTAATT
1 AAATTTTAATT
98979572 AATCAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 4 0.16
16 7 0.28
17 9 0.36
18 5 0.20
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
AAATTTTAATTTTAA
Found at i:98983474 original size:22 final size:22
Alignment explanation
Indices: 98983449--98983506 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 22
98983439 CTAAATTAAC
*
98983449 ATTTAAAAATATTTATAA-TTT
1 ATTTAAAAATAGTTATAACTTT
98983470 AATTTAAAATTATTAGTTATAACTTT
1 -ATTTAAAA--A-TAGTTATAACTTT
98983496 ATTTAAAAATA
1 ATTTAAAAATA
98983507 AGTTGTGATA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
22 10 0.32
23 1 0.03
24 1 0.03
25 16 0.52
26 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTTAAAAATAGTTATAACTTT
Found at i:98988911 original size:80 final size:80
Alignment explanation
Indices: 98988778--98988937 Score: 266
Period size: 80 Copynumber: 2.0 Consensus size: 80
98988768 GATCGTTTTG
* *
98988778 ATCAAAAGTTGAGAAACGTTTTAAACTACCCAACTCAAAATATAAGTACTAATTTAGTTAGGATT
1 ATCAAAAGCTGAGAAACGTTTTAAACTACCCAACTCAAAATATAAGTACTAATTTAGTTAAGATT
98988843 TATTGTTGTAAATAA
66 TATTGTTGTAAATAA
* * * *
98988858 ATCAAAAGCTGAGAAATGTTTTAAACTATCCAACTCAAAATATAGGTACTAATTTGGTTAAGATT
1 ATCAAAAGCTGAGAAACGTTTTAAACTACCCAACTCAAAATATAAGTACTAATTTAGTTAAGATT
98988923 TATTGTTGTAAATAA
66 TATTGTTGTAAATAA
98988938 CACAATTGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (80 bp):
ATCAAAAGCTGAGAAACGTTTTAAACTACCCAACTCAAAATATAAGTACTAATTTAGTTAAGATT
TATTGTTGTAAATAA
Found at i:98989793 original size:25 final size:27
Alignment explanation
Indices: 98989764--98989817 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
98989754 GCTCTTAATG
98989764 ATTATAT-CTTTT-GTTAAATTTGATC
1 ATTATATGCTTTTAGTTAAATTTGATC
* *
98989789 ATTATTTGTTTTTAGTTAAATTTGATC
1 ATTATATGCTTTTAGTTAAATTTGATC
98989816 AT
1 AT
98989818 CGACTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.24
26 4 0.16
27 15 0.60
ACGTcount: A:0.28, C:0.06, G:0.09, T:0.57
Consensus pattern (27 bp):
ATTATATGCTTTTAGTTAAATTTGATC
Found at i:98993471 original size:162 final size:163
Alignment explanation
Indices: 98993196--98993510 Score: 499
Period size: 162 Copynumber: 1.9 Consensus size: 163
98993186 TAATTTCGTC
* * *
98993196 AGGGTAACAAGTAGGTTTCTTATAGGGTTACTTGTCCTATCTACAATAAGCTTCTCTCTTTTTTT
1 AGGGTAACAAGTAAGTTTCTTATAGGGTTACTTGGCCTATCTACAATAAGCTTCTCTCTTTCTTT
** * *
98993261 CATGCTTGCAATTAACTAATTTTGTTCAAGAAAGGTCCAAATTTCTTTCAATGAAAATATTAAAA
66 CATGCTTGCAATTAACTAATTTTGCACAAGAAAGGCCCAAAATTCTTTCAATGAAAATATTAAAA
* *
98993326 CTAGGTATTCCCGATTTTGATTTGGGTTTTGTT
131 CGAGATATTCCCGATTTTGATTTGGGTTTTGTT
*
98993359 AGGGTAACAAGTAATTTTCTTATAGGGTTACTTGGCCTATCTA-AAGTAA-CTTCTCTCTTTCTT
1 AGGGTAACAAGTAAGTTTCTTATAGGGTTACTTGGCCTATCTACAA-TAAGCTTCTCTCTTTCTT
*
98993422 TCATGCTTGGAATTAACTAATTTTGCACAAGAAAGGCCCAAAATTCTTTCAATGAAAATATTAAA
65 TCATGCTTGCAATTAACTAATTTTGCACAAGAAAGGCCCAAAATTCTTTCAATGAAAATATTAAA
*
98993487 ACGAGATATTCCTGATTTTGATTT
130 ACGAGATATTCCCGATTTTGATTT
98993511 AATTTTGAAG
Statistics
Matches: 139, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
162 96 0.69
163 43 0.31
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (163 bp):
AGGGTAACAAGTAAGTTTCTTATAGGGTTACTTGGCCTATCTACAATAAGCTTCTCTCTTTCTTT
CATGCTTGCAATTAACTAATTTTGCACAAGAAAGGCCCAAAATTCTTTCAATGAAAATATTAAAA
CGAGATATTCCCGATTTTGATTTGGGTTTTGTT
Found at i:98994543 original size:25 final size:25
Alignment explanation
Indices: 98994515--98994565 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
98994505 TTAAGATTTA
*
98994515 TACATAATTGTGATTTAATTGAATC
1 TACATAATCGTGATTTAATTGAATC
98994540 TACATAATCGTGATTTAATTGAATC
1 TACATAATCGTGATTTAATTGAATC
98994565 T
1 T
98994566 TTCTTCATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (25 bp):
TACATAATCGTGATTTAATTGAATC
Found at i:98997032 original size:17 final size:17
Alignment explanation
Indices: 98997007--98997041 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
98996997 TTTGTGATTA
*
98997007 TTTTGTTTGGATAAATT
1 TTTTGTTTGGAAAAATT
*
98997024 TTTTTTTTGGAAAAATT
1 TTTTGTTTGGAAAAATT
98997041 T
1 T
98997042 AGGCTATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (17 bp):
TTTTGTTTGGAAAAATT
Found at i:99010431 original size:28 final size:31
Alignment explanation
Indices: 99010389--99010449 Score: 92
Period size: 28 Copynumber: 2.1 Consensus size: 31
99010379 AAAATTTTAA
*
99010389 AATTTAAAAAGTATAGGGACT-AAA-TGATC
1 AATTTAAAAAGTATAGAGACTAAAATTGATC
99010418 AATTT-AAAAGTATAGAGACTAAAATTGATC
1 AATTTAAAAAGTATAGAGACTAAAATTGATC
99010448 AA
1 AA
99010450 AAAAAGTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 14 0.48
29 8 0.28
30 7 0.24
ACGTcount: A:0.51, C:0.07, G:0.15, T:0.28
Consensus pattern (31 bp):
AATTTAAAAAGTATAGAGACTAAAATTGATC
Found at i:99010454 original size:28 final size:27
Alignment explanation
Indices: 99010393--99010462 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 27
99010383 TTTTAAAATT
*
99010393 TAAAAAGTATAGGGACTAAATGATCAA
1 TAAAAAGTATAGAGACTAAATGATCAA
*
99010420 TTTAAAAGTATAGAGACTAAAATTGATCAA
1 -TAAAAAGTATAGAGACT-AAA-TGATCAA
99010450 -AAAAAGTAT-GAGA
1 TAAAAAGTATAGAGA
99010463 ATTAAATTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 4 0.11
28 23 0.62
29 3 0.08
30 7 0.19
ACGTcount: A:0.53, C:0.06, G:0.17, T:0.24
Consensus pattern (27 bp):
TAAAAAGTATAGAGACTAAATGATCAA
Found at i:99026348 original size:2 final size:2
Alignment explanation
Indices: 99026341--99026386 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
99026331 CAAACAATCA
99026341 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
99026383 CT CT
1 CT CT
99026387 TTGGCTCTAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:99026895 original size:19 final size:20
Alignment explanation
Indices: 99026857--99026897 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
99026847 TTTTATTTTT
99026857 TTATTATGTATAAATTATAA
1 TTATTATGTATAAATTATAA
99026877 TTATT-TGT-TAAATTTATAA
1 TTATTATGTATAAA-TTATAA
99026896 TT
1 TT
99026898 TCTAAGTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 11 0.55
20 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (20 bp):
TTATTATGTATAAATTATAA
Found at i:99030318 original size:25 final size:25
Alignment explanation
Indices: 99030290--99030352 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
99030280 ATTAACATAA
*
99030290 TTATTGATATAACAT-TATTTTATAT
1 TTATTGATATAACATATA-ATTATAT
99030315 TTATTG-TATACACATATAATTATAT
1 TTATTGATATA-ACATATAATTATAT
*
99030340 TTATCTAATATAA
1 TTAT-TGATATAA
99030353 AAATAAATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
24 4 0.12
25 20 0.62
26 4 0.12
27 4 0.12
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (25 bp):
TTATTGATATAACATATAATTATAT
Found at i:99031109 original size:21 final size:23
Alignment explanation
Indices: 99031085--99031140 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
99031075 AAAATATTAT
99031085 TAAATAATT-A-AAAATAGACCA
1 TAAATAATTCAGAAAATAGACCA
*
99031106 TAAATAATGTCATGAAAATAGTCCA
1 TAAATAAT-TCA-GAAAATAGACCA
99031131 TAAAATAATT
1 T-AAATAATT
99031141 TTTCTATGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 8 0.28
22 1 0.03
23 1 0.03
25 12 0.41
26 7 0.24
ACGTcount: A:0.55, C:0.09, G:0.07, T:0.29
Consensus pattern (23 bp):
TAAATAATTCAGAAAATAGACCA
Found at i:99032512 original size:26 final size:26
Alignment explanation
Indices: 99032476--99032529 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
99032466 GAACAAGTCA
99032476 TTTCCAGAGGGTTGGGTAAATTGTCC
1 TTTCCAGAGGGTTGGGTAAATTGTCC
99032502 TTTCCAGAGGGTTGGGTAAATTGTCC
1 TTTCCAGAGGGTTGGGTAAATTGTCC
99032528 TT
1 TT
99032530 GAATTGAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.19, C:0.15, G:0.30, T:0.37
Consensus pattern (26 bp):
TTTCCAGAGGGTTGGGTAAATTGTCC
Found at i:99035832 original size:46 final size:45
Alignment explanation
Indices: 99035765--99035932 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 45
99035755 CGCCCCTAAG
*
99035765 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* *
99035811 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * * *
99035858 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
99035904 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
99035933 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 55 0.54
47 28 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:99035876 original size:93 final size:93
Alignment explanation
Indices: 99035766--99035936 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
99035756 GCCCCTAAGT
* * *
99035766 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
99035831 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
99035859 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
99035924 CGAGTTCGGATGC
66 CGAGTTCGGATGC
99035937 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:99036390 original size:30 final size:30
Alignment explanation
Indices: 99036356--99036415 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
99036346 ATTTAATACG
99036356 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
99036386 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
99036416 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:99038066 original size:46 final size:46
Alignment explanation
Indices: 99038001--99038417 Score: 550
Period size: 46 Copynumber: 9.0 Consensus size: 46
99037991 TTATCTTTGA
* * * * * *
99038001 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** *
99038047 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCACAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** *
99038094 CTTGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * **
99038140 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
*
99038186 CATGTTGCCATGGTATCTTTCAACCATGGTCCTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
99038232 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * * * *
99038278 TAGGTTGCTATGGTATCTTTCAACCGTGGTCTTGCACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
99038324 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
99038370 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
99038416 CA
1 CA
99038418 GAGAGCACAC
Statistics
Matches: 336, Mismatches: 32, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
45 4 0.01
46 291 0.87
47 41 0.12
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:99041788 original size:42 final size:42
Alignment explanation
Indices: 99041680--99041839 Score: 141
Period size: 43 Copynumber: 3.7 Consensus size: 42
99041670 AGCATATACA
* * * * *
99041680 ATGCCAACGTCCCAGACGTGGTTTTATATGTAATCA-AACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAT-ATAA-GTCG
*
99041723 ATGCC-ACTGTCCCAGGCAG-GGTCTTACACGAAAT-T-AGATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATATAAG-T-CG
*
99041765 ATGCCAACGTCTCAGACGTGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAAT-ATAAGTCG
*
99041809 ATGCCAACTTCCCAGACGTGGTCTTACACGA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA
99041840 TAACACATAT
Statistics
Matches: 96, Mismatches: 10, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
41 3 0.03
42 27 0.28
43 31 0.32
44 31 0.32
45 2 0.02
46 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATATAAGTCG
Found at i:99041825 original size:44 final size:44
Alignment explanation
Indices: 99041680--99041838 Score: 154
Period size: 44 Copynumber: 3.7 Consensus size: 44
99041670 AGCATATACA
* * * *
99041680 ATGCCAACGTCCCAGACGTGGTTTTATATGT-AATCA-AACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAA-GTCG
*
99041723 ATGCC-ACTGTCCCAGGCAG-GGTCTTACACG-AAAT--T-AGATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAATCATAAG-T-CG
*
99041765 ATGCCAACGTCTCAGACGTGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGTCG
*
99041809 ATGCCAACTTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
99041839 ATAACACATA
Statistics
Matches: 95, Mismatches: 9, Indels: 23
0.75 0.07 0.18
Matches are distributed among these distances:
41 3 0.03
42 27 0.28
43 30 0.32
44 31 0.33
45 2 0.02
46 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGTCG
Found at i:99041832 original size:86 final size:85
Alignment explanation
Indices: 99041675--99041839 Score: 210
Period size: 85 Copynumber: 1.9 Consensus size: 85
99041665 CGGAAAGCAT
* * * *
99041675 ATACAATGCCAACGTCCCAGACGTGGTTTTATATGTAATCAAACATCGATGCCACTGTCCCAGGC
1 ATACAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAACATCGATGCCACTGTCCCAGAC
99041740 AGGGTCTTACACGAAATTAG
66 AGGGTCTTACACGAAATTAG
* * *
99041760 ATACGATGCCAACGTCTCAGACGTGGTCTTACACGTAAATCATAA-GTCGATGCCAACT-TCCCA
1 ATACAATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCA-AACATCGATGCC-ACTGTCCCA
99041823 GAC-GTGGTCTTACACGA
63 GACAG-GGTCTTACACGA
99041840 TAACACATAT
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
85 32 0.46
86 32 0.46
87 5 0.07
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAACATCGATGCCACTGTCCCAGAC
AGGGTCTTACACGAAATTAG
Found at i:99050130 original size:23 final size:23
Alignment explanation
Indices: 99050104--99050147 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
99050094 ATAAAATGAT
*
99050104 TTAAATAAAAAAAATAGATAATC
1 TTAAATAAAAAAAATACATAATC
* *
99050127 TTAAATATAAAATATACATAA
1 TTAAATAAAAAAAATACATAA
99050148 AGGATTTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (23 bp):
TTAAATAAAAAAAATACATAATC
Found at i:99064244 original size:3 final size:3
Alignment explanation
Indices: 99064236--99064266 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
99064226 TCAAATTGAA
99064236 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
99064267 GATGCATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:99072505 original size:15 final size:15
Alignment explanation
Indices: 99072487--99072537 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
99072477 TTTTATCCAG
99072487 TTATATTTTAATCAT
1 TTATATTTTAATCAT
*
99072502 TTAT-TTTTAA-AAT
1 TTATATTTTAATCAT
*
99072515 ATTACATTTTAATCAT
1 -TTATATTTTAATCAT
99072531 TTATATT
1 TTATATT
99072538 ATTACACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
13 2 0.07
14 9 0.31
15 16 0.55
16 2 0.07
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATTTTAATCAT
Found at i:99074836 original size:111 final size:111
Alignment explanation
Indices: 99074630--99074903 Score: 371
Period size: 112 Copynumber: 2.5 Consensus size: 111
99074620 ATAAAATTAA
* * * * *
99074630 ACCTATATTGTGGGTACGGCAAATTCTAATA-TA-AAAA-TTAATTAATTATTTTCAATATCATT
1 ACCTACATTGTGGGTATGGTAAATTTTAATATTATAAAATTTAATTAATTATTTTCAATATAATT
*
99074692 ATTTTCAATAAATATAATTTTTATATGTGAAATATTTATTTTTTTC
66 ATTTTCAATAAATATAATTTTTATATGTCAAATATTTATTTTTTTC
99074738 ACCTACATTGTGGGTATGGTAAATTTTAATATTATAAAATTTGAATTAATTA-TTTCAAATATAA
1 ACCTACATTGTGGGTATGGTAAATTTTAATATTATAAAATTT-AATTAATTATTTTC-AATATAA
*
99074802 TTATTTT-TATAAATATAATTTTTATATGTCAAATATTTATTTTTTTC
64 TTATTTTCAATAAATATAATTTTTATATGTCAAATATTTATTTTTTTC
* * * * *
99074849 CCCGTGCATTGTGGGTATAGTAAATTTTAATATTATAAAA-TCAAATAATTATTTT
1 ACC-TACATTGTGGGTATGGTAAATTTTAATATTATAAAATTTAATTAATTATTTT
99074904 GAATGCCATT
Statistics
Matches: 147, Mismatches: 12, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
108 27 0.18
109 2 0.01
110 12 0.08
111 50 0.34
112 56 0.38
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.47
Consensus pattern (111 bp):
ACCTACATTGTGGGTATGGTAAATTTTAATATTATAAAATTTAATTAATTATTTTCAATATAATT
ATTTTCAATAAATATAATTTTTATATGTCAAATATTTATTTTTTTC
Found at i:99076072 original size:47 final size:47
Alignment explanation
Indices: 99076005--99076135 Score: 149
Period size: 47 Copynumber: 2.8 Consensus size: 47
99075995 CACATCTTTA
* * * *
99076005 CATAATGATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATAT
1 CATACTGATGCCATATCCCAGATATGGTCTTACACAGT-AGCACATAT
* * *
99076052 C-TCACTGATGTCATATCCCAGATATGGTCTTATACAGTAGCATATAT
1 CAT-ACTGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATAT
* *
99076099 CATACCGATGCCATATCCCAGATATGGTCTTATACAG
1 CATACTGATGCCATATCCCAGATATGGTCTTACACAG
99076136 AAATCACTTG
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 1 0.01
47 68 0.94
48 3 0.04
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (47 bp):
CATACTGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATAT
Found at i:99076151 original size:7 final size:7
Alignment explanation
Indices: 99076139--99076167 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
99076129 TATACAGAAA
99076139 TCACTTG
1 TCACTTG
99076146 TCACTTG
1 TCACTTG
99076153 TCACTTG
1 TCACTTG
99076160 TCACTTG
1 TCACTTG
99076167 T
1 T
99076168 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:99076201 original size:31 final size:31
Alignment explanation
Indices: 99076166--99076374 Score: 310
Period size: 31 Copynumber: 6.7 Consensus size: 31
99076156 CTTGTCACTT
* *
99076166 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** *
99076197 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
99076228 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
99076259 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
99076290 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
99076321 GTAGCTGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
99076352 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
99076375 GTTGTCATTT
Statistics
Matches: 162, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 162 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:99076458 original size:50 final size:50
Alignment explanation
Indices: 99076352--99076578 Score: 348
Period size: 50 Copynumber: 4.5 Consensus size: 50
99076342 CACTGATCAG
* * * *
99076352 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
* *
99076403 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
99076453 GTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
99076503 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
99076553 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
99076579 GTTTCCATGG
Statistics
Matches: 162, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
50 138 0.85
51 24 0.15
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:99077406 original size:35 final size:35
Alignment explanation
Indices: 99077360--99077432 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
99077350 ATTTTTCAAA
99077360 GTCAGAACAGGGGAACTCAAAATCATTCTGACCTT
1 GTCAGAACAGGGGAACTCAAAATCATTCTGACCTT
99077395 GTCAGAACAGGGGAACTCAAAATCATTCTGACCTT
1 GTCAGAACAGGGGAACTCAAAATCATTCTGACCTT
99077430 GTC
1 GTC
99077433 TCACAAAAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (35 bp):
GTCAGAACAGGGGAACTCAAAATCATTCTGACCTT
Found at i:99078772 original size:27 final size:30
Alignment explanation
Indices: 99078742--99078797 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
99078732 TTAATTAAAA
*
99078742 ATAAAATT-AAAA-AA-ATGTTTATTAATT
1 ATAAAATTGAAAATAACATGCTTATTAATT
*
99078769 ATAAACTTGAAAATAACATGCTTATTAAT
1 ATAAAATTGAAAATAACATGCTTATTAAT
99078798 GAAAAATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 7 0.29
28 4 0.17
29 2 0.08
30 11 0.46
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (30 bp):
ATAAAATTGAAAATAACATGCTTATTAATT
Found at i:99080853 original size:52 final size:52
Alignment explanation
Indices: 99080775--99080877 Score: 206
Period size: 52 Copynumber: 2.0 Consensus size: 52
99080765 ACCCCTCTAA
99080775 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTGT
1 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTGT
99080827 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTG
1 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTG
99080878 GTTAGCCTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (52 bp):
TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTGT
Found at i:99082337 original size:20 final size:20
Alignment explanation
Indices: 99082314--99082386 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
99082304 GAATGTCAAC
*
99082314 AATTTTGTAAGAGATTCAGT
1 AATTTTGTAAGAAATTCAGT
* * *
99082334 AATTCTGTAAAAAATTCATT
1 AATTTTGTAAGAAATTCAGT
* * *
99082354 AATTCTATAAGAAATTTAGT
1 AATTTTGTAAGAAATTCAGT
* *
99082374 ATTTTTTTAAGAA
1 AATTTTGTAAGAA
99082387 TGTTAGTAAT
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.42
Consensus pattern (20 bp):
AATTTTGTAAGAAATTCAGT
Found at i:99082856 original size:7 final size:7
Alignment explanation
Indices: 99082814--99082863 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
99082804 TACCCTGAAC
99082814 CCCT-AA
1 CCCTAAA
99082820 CCCT-AA
1 CCCTAAA
99082826 CCCTCAAA
1 CCCT-AAA
*
99082834 CCCAAAA
1 CCCTAAA
* *
99082841 TCTTAAA
1 CCCTAAA
99082848 CCCTAAA
1 CCCTAAA
99082855 CCCTAAA
1 CCCTAAA
99082862 CC
1 CC
99082864 TCAAAACCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
6 10 0.28
7 21 0.58
8 5 0.14
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16
Consensus pattern (7 bp):
CCCTAAA
Found at i:99088473 original size:46 final size:46
Alignment explanation
Indices: 99088406--99088575 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
99088396 TGTAACCCGC
*
99088406 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCACAT
*
99088452 CCATAAGTGAAATCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G--T-GTTCACAT
* * * **** *
99088502 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCACAT
99088545 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
99088576 TTTGGATGCT
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 57 0.56
47 25 0.25
48 3 0.03
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCACAT
Found at i:99088527 original size:93 final size:93
Alignment explanation
Indices: 99088414--99088584 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
99088404 GCCCATAAGT
****
99088414 GAACTCAGACTCAACTCAACGAGCTCGGGTGTTCACATCCATAAGTGAAATCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAAATCGGACTCAACTCAA
99088479 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * * *
99088507 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAAATCGGACTCAACTCAA
* *
99088572 CGAGTTTGGATGC
66 CGAGCTCGGATGC
99088585 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAAATCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:99089173 original size:20 final size:18
Alignment explanation
Indices: 99089139--99089175 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
99089129 GGAACTCATA
99089139 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
99089157 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
99089176 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:99092428 original size:86 final size:86
Alignment explanation
Indices: 99092283--99092541 Score: 464
Period size: 86 Copynumber: 3.0 Consensus size: 86
99092273 ATACGCCTAA
*
99092283 AAAAAAATGACCATCCATGTGTGGCAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
1 AAAAAAATGACCATCCATGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
99092348 ATTTCAATGCAACATTCTTCT
66 ATTTCAATGCAACATTCTTCT
* *
99092369 AAAAAAAGGACCATCCACGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
1 AAAAAAATGACCATCCATGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
*
99092434 ATTTCAATGCACCATTCTTCT
66 ATTTCAATGCAACATTCTTCT
* *
99092455 AAAAAAATGACCATCCATGTGTGGTAGGAACAATCCACCATGGTTGCCCTCTATGTTTTGAGGTA
1 AAAAAAATGACCATCCATGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
99092520 ATTTCAATGCAACATTCTTCT
66 ATTTCAATGCAACATTCTTCT
99092541 A
1 A
99092542 TTTTCTCATC
Statistics
Matches: 164, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 164 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (86 bp):
AAAAAAATGACCATCCATGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
ATTTCAATGCAACATTCTTCT
Found at i:99092797 original size:9 final size:9
Alignment explanation
Indices: 99092779--99092813 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
99092769 TTTGTAGATG
99092779 AAAT-AAAA
1 AAATAAAAA
99092787 AAATAAAAA
1 AAATAAAAA
99092796 AAATAACAAA
1 AAATAA-AAA
99092806 AAATAAAA
1 AAATAAAA
99092814 TATTTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 4 0.16
9 12 0.48
10 9 0.36
ACGTcount: A:0.86, C:0.03, G:0.00, T:0.11
Consensus pattern (9 bp):
AAATAAAAA
Found at i:99093123 original size:30 final size:32
Alignment explanation
Indices: 99093065--99093124 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
99093055 AGGTATAATG
*
99093065 ACTTAAAAAGAGAATTAAATGCACAAAATATA
1 ACTTAAAAAGAGAATTAAATGAACAAAATATA
*
99093097 ACTTAAAAAGAGAA-TGAA-GAACAAAATA
1 ACTTAAAAAGAGAATTAAATGAACAAAATA
99093125 AATAGTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 9 0.35
31 3 0.12
32 14 0.54
ACGTcount: A:0.62, C:0.08, G:0.12, T:0.18
Consensus pattern (32 bp):
ACTTAAAAAGAGAATTAAATGAACAAAATATA
Found at i:99096062 original size:2 final size:2
Alignment explanation
Indices: 99096055--99096134 Score: 133
Period size: 2 Copynumber: 40.0 Consensus size: 2
99096045 CTAATTATCA
* * *
99096055 AG AG AG AG AG AG AG AG GG AG AG GG AG AG GG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
99096097 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
99096135 CCGATCTAAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 72 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (2 bp):
AG
Found at i:99098275 original size:27 final size:27
Alignment explanation
Indices: 99098227--99098312 Score: 106
Period size: 27 Copynumber: 3.2 Consensus size: 27
99098217 GCGAGGCTGC
*
99098227 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGACAG-AGCCACCAGATA
*
99098254 CAGATATTGTGCCAGAGCCACCAGA-A
1 CAGATATTGTGACAGAGCCACCAGATA
*
99098280 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGACAGAGCCACCAGATA
99098307 CAGATA
1 CAGATA
99098313 ATCACCAGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
26 8 0.15
27 44 0.83
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGACAGAGCCACCAGATA
Found at i:99098319 original size:70 final size:70
Alignment explanation
Indices: 99098244--99098374 Score: 203
Period size: 70 Copynumber: 1.9 Consensus size: 70
99098234 TGTGACGAAG
99098244 TCACCAGATACAGATAT-TGTGCCAGAGCCACCAGAACAGAT-ATATGTGGCAGAGCCACCAGAT
1 TCACCAGA-ACAGATATATGTGCCAGAGCCACCAGAACAGATAAT-TGTGGCAGAGCCACCAGAT
99098307 CAGATAA
64 CAGATAA
* * *
99098314 TCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 TCACCAGAACAGATATATGTGCCAGAGCCACCAGAACAGATAATTGTGGCAGAGCCACCAG
99098375 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
69 8 0.14
70 46 0.82
71 2 0.04
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (70 bp):
TCACCAGAACAGATATATGTGCCAGAGCCACCAGAACAGATAATTGTGGCAGAGCCACCAGATCA
GATAA
Found at i:99098333 original size:43 final size:43
Alignment explanation
Indices: 99098272--99098357 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
99098262 GTGCCAGAGC
99098272 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAT
1 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAT
99098315 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAT
1 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAT
99098358 TGTGGCATAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.16
Consensus pattern (43 bp):
CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAT
Found at i:99098345 original size:27 final size:27
Alignment explanation
Indices: 99098315--99098374 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
99098305 ATCAGATAAT
99098315 CACCAGAACAGAT-ATATGTGGCAGAGC
1 CACCAGAACAGATAAT-TGTGGCAGAGC
* *
99098342 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGAACAGATAATTGTGGCAGAGC
99098369 CACCAG
1 CACCAG
99098375 GACGCTTCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (27 bp):
CACCAGAACAGATAATTGTGGCAGAGC
Found at i:99101258 original size:56 final size:55
Alignment explanation
Indices: 99101192--99101345 Score: 184
Period size: 65 Copynumber: 2.6 Consensus size: 55
99101182 TTTTTAAGGG
*
99101192 AAAATTAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAATTGTAA
1 AAAATCAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAATT-TAA
*
99101248 AAAATCAATTAAATTAGGGTTTAGGGTTTTTATAGTTTATTAATTAAATTAATTATTAATTTAA
1 AAAATCAATTAAATTAGGGTTTAGGG----T-TA----ATTAATTAAATTAACTATTAATTTAA
99101312 AAGAATCAATTAAATTAGGGTTTAGGGTT-ATTAA
1 AA-AATCAATTAAATTAGGGTTTAGGGTTAATTAA
99101346 GGTTAATTAA
Statistics
Matches: 86, Mismatches: 2, Indels: 21
0.79 0.02 0.19
Matches are distributed among these distances:
55 5 0.06
56 25 0.29
60 2 0.02
61 3 0.03
64 5 0.06
65 46 0.53
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42
Consensus pattern (55 bp):
AAAATCAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAATTTAA
Found at i:99101293 original size:65 final size:64
Alignment explanation
Indices: 99101216--99101386 Score: 272
Period size: 65 Copynumber: 2.6 Consensus size: 64
99101206 TAGGGTTTAG
*
99101216 GGTTAATTAATTAAATTAACTATTAATTGTAAAAAATCAATTAAATTAGGGTTTAGGGTTTTTAT
1 GGTTAATTAATTAAATTAACTATTAATT-TAAAAAATCAATTAAATTAGGGTTTAGGGTTATTA-
99101281 A
64 A
* *
99101282 -GTTTATTAATTAAATTAATTATTAATTTAAAAGAATCAATTAAATTAGGGTTTAGGGTTATTAA
1 GGTTAATTAATTAAATTAACTATTAATTTAAAA-AATCAATTAAATTAGGGTTTAGGGTTATTAA
99101346 GGTTAATTAATTAAATTAACTATTAATTTTAAAAAATCAAT
1 GGTTAATTAATTAAATTAACTATTAA-TTTAAAAAATCAAT
99101387 ATATAAATTT
Statistics
Matches: 97, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
64 6 0.06
65 84 0.87
66 7 0.07
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (64 bp):
GGTTAATTAATTAAATTAACTATTAATTTAAAAAATCAATTAAATTAGGGTTTAGGGTTATTAA
Found at i:99104708 original size:38 final size:39
Alignment explanation
Indices: 99104658--99104747 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 39
99104648 GTATTATTTA
* *
99104658 TATTTTATTAAAAATATTTTCG-T-ATTTAAAATAACATT
1 TATTTTATTAAAAA-ATATTCGCTAATTTAAAAGAACATT
* *
99104696 TATTTTAATAAAAAATATTGGCTAATTTAAAAGAACATT
1 TATTTTATTAAAAAATATTCGCTAATTTAAAAGAACATT
99104735 TATTTTATTAAAA
1 TATTTTATTAAAA
99104748 TTATAAAAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
37 5 0.11
38 14 0.31
39 26 0.58
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (39 bp):
TATTTTATTAAAAAATATTCGCTAATTTAAAAGAACATT
Found at i:99105360 original size:30 final size:30
Alignment explanation
Indices: 99105326--99105382 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
99105316 TGTTGGGCCT
*
99105326 GGTGACTGTGTGGGCGCTGTTGATGGGTCC
1 GGTGACTATGTGGGCGCTGTTGATGGGTCC
99105356 GGTGACTATGTGGGCGCTGTTGATGGG
1 GGTGACTATGTGGGCGCTGTTGATGGG
99105383 CCCGCATCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.09, C:0.14, G:0.47, T:0.30
Consensus pattern (30 bp):
GGTGACTATGTGGGCGCTGTTGATGGGTCC
Found at i:99106870 original size:24 final size:24
Alignment explanation
Indices: 99106843--99106892 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
99106833 ACTGTTATAA
*
99106843 AAAATT-ATAAAATAAAAAATAATT
1 AAAATTGAAAAAATAAAAAA-AATT
*
99106867 AAAATTGAAAAAATGAAAAAAATT
1 AAAATTGAAAAAATAAAAAAAATT
99106891 AA
1 AA
99106893 TTAGTATTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (24 bp):
AAAATTGAAAAAATAAAAAAAATT
Found at i:99109034 original size:26 final size:25
Alignment explanation
Indices: 99108984--99109037 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
99108974 TAAATAACGC
* *
99108984 ATAAAAATTTTAAAATAAATAATAT
1 ATAAAAAGTTTAAAACAAATAATAT
99109009 ATAAAATAGTTTAAAACAAA-AGATAT
1 ATAAAA-AGTTTAAAACAAATA-ATAT
99109035 ATA
1 ATA
99109038 TATATATGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (25 bp):
ATAAAAAGTTTAAAACAAATAATAT
Found at i:99109282 original size:7 final size:7
Alignment explanation
Indices: 99109270--99109295 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
99109260 AAGAATGAGC
99109270 AATAATA
1 AATAATA
99109277 AATAATA
1 AATAATA
99109284 AATAATA
1 AATAATA
99109291 AATAA
1 AATAA
99109296 AAGAGATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AATAATA
Found at i:99112339 original size:38 final size:39
Alignment explanation
Indices: 99112255--99112389 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
99112245 ACCAATATGG
*
99112255 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
99112294 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
99112332 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
99112373 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
99112390 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:99113193 original size:5 final size:5
Alignment explanation
Indices: 99113172--99113227 Score: 94
Period size: 5 Copynumber: 11.0 Consensus size: 5
99113162 TTTCTTTTAT
*
99113172 ATATA ATAATG ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
99113223 ATATA
1 ATATA
99113228 CTTAATTATT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
5 44 0.92
6 4 0.08
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:99114482 original size:23 final size:23
Alignment explanation
Indices: 99114456--99114500 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
99114446 ATCATGGTTG
99114456 AATTTGGATGATAATCATCTCTA
1 AATTTGGATGATAATCATCTCTA
99114479 AATTTGGATGATAATCATCTCT
1 AATTTGGATGATAATCATCTCT
99114501 TCTAGATATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (23 bp):
AATTTGGATGATAATCATCTCTA
Found at i:99114796 original size:18 final size:19
Alignment explanation
Indices: 99114773--99114815 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
99114763 CAGGCAAGCC
99114773 TTTTG-AAGTAGTATTGTA
1 TTTTGTAAGTAGTATTGTA
99114791 TTTTGATTAAGTAGTATTGTA
1 TTTTG--TAAGTAGTATTGTA
99114812 TTTT
1 TTTT
99114816 TGGATAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.23
21 17 0.77
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.56
Consensus pattern (19 bp):
TTTTGTAAGTAGTATTGTA
Found at i:99116974 original size:159 final size:158
Alignment explanation
Indices: 99116664--99116982 Score: 390
Period size: 159 Copynumber: 2.0 Consensus size: 158
99116654 TTAAGGTATA
* * *
99116664 AAATCCAACAAATTCAATTAATGACTCTAATCAACCCTCCAAGAAATAATCCTTATAAAACTGAA
1 AAATCCAACAAACTCAATTAATGACTCTAATCAACCCTCCAAAAAATAATCCTTAGAAAACTGAA
* * * * **
99116729 GGATTAAAAATGAATTCTCACGACTCATTGAAAAAAATTGAGAAGAAAATTGTTTCTAAAAATCA
66 GGATAAAAAATGAATTCCCACGACTCATTGAAAAAAATTGAGAAAAAAACTACTTCTAAAAATCA
* * *
99116794 TAAGAAAGCAATTTTGCACAAAGAAACT
131 CAAGAAAGAAATCTTGCACAAAGAAACT
* * *
99116822 AAATCCCAACAAACTCAATTACTGACTCTAATCAACCCTCCAAAAAATAATCCTTAGCAAATTGA
1 AAAT-CCAACAAACTCAATTAATGACTCTAATCAACCCTCCAAAAAATAATCCTTAGAAAACTGA
* * * * *
99116887 AGGGTAAAAAATGAATTCCCATGA-TCCTTTAAGGAAAATCT-AGAAAAAAACTACTTCTAAAAA
65 AGGATAAAAAATGAATTCCCACGACTCATTGAA-AAAAAT-TGAGAAAAAAACTACTTCTAAAAA
* * *
99116950 TCACAAGGAAGAAATCTTGTACAAAGAATCT
128 TCACAAGAAAGAAATCTTGCACAAAGAAACT
99116981 AA
1 AA
99116983 CTCTTATAGT
Statistics
Matches: 135, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
158 10 0.07
159 124 0.92
160 1 0.01
ACGTcount: A:0.48, C:0.18, G:0.10, T:0.24
Consensus pattern (158 bp):
AAATCCAACAAACTCAATTAATGACTCTAATCAACCCTCCAAAAAATAATCCTTAGAAAACTGAA
GGATAAAAAATGAATTCCCACGACTCATTGAAAAAAATTGAGAAAAAAACTACTTCTAAAAATCA
CAAGAAAGAAATCTTGCACAAAGAAACT
Found at i:99119174 original size:103 final size:103
Alignment explanation
Indices: 99118995--99119183 Score: 243
Period size: 103 Copynumber: 1.8 Consensus size: 103
99118985 ACTAACCCTA
* * * * *
99118995 AGTCATAGTTAGATTGATATAGACATTGTTTCCAATGTAAAAGGACGTGGGTTCAAGTGCACTGC
1 AGTCATAGTTAGATTCATATAGACATTGTTTCCAATGTAAAAGGACATAGGCTCAAGTACACTGC
*
99119060 AGCGCATTATCCTCCTATTTAAAAATACAAGTTTATTG
66 AACGCATTATCCTCCTATTTAAAAATACAAGTTTATTG
* * * * * * *
99119098 AGTCATAGTTCGATTCATATGGGCATTGTTTCCAATGTGAAAGTACATAGGCTCAAGTATACTGT
1 AGTCATAGTTAGATTCATATAGACATTGTTTCCAATGTAAAAGGACATAGGCTCAAGTACACTGC
* *
99119163 AATGCATTATCCTCTTATTTA
66 AACGCATTATCCTCCTATTTA
99119184 TGAATTCGGA
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
103 71 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (103 bp):
AGTCATAGTTAGATTCATATAGACATTGTTTCCAATGTAAAAGGACATAGGCTCAAGTACACTGC
AACGCATTATCCTCCTATTTAAAAATACAAGTTTATTG
Found at i:99121754 original size:12 final size:12
Alignment explanation
Indices: 99121739--99121791 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
99121729 TTTAGGCTCA
*
99121739 GGTTCTGGATAT
1 GGTTCAGGATAT
*
99121751 GGTTCAGGGTAT
1 GGTTCAGGATAT
*
99121763 GGTTCCGGA-AGT
1 GGTTCAGGATA-T
*
99121775 GGCTCAGGATAT
1 GGTTCAGGATAT
99121787 GGTTC
1 GGTTC
99121792 GGGAGCTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.17, C:0.13, G:0.38, T:0.32
Consensus pattern (12 bp):
GGTTCAGGATAT
Found at i:99121832 original size:9 final size:9
Alignment explanation
Indices: 99121814--99121857 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
99121804 TAGTGGAGGA
*
99121814 GGTGGAGGG
1 GGTGGTGGG
99121823 GGTGGTGGG
1 GGTGGTGGG
*
99121832 GGTGGTGGT
1 GGTGGTGGG
* *
99121841 GGAGGTGGA
1 GGTGGTGGG
99121850 GGTGGTGG
1 GGTGGTGG
99121858 CAGCTCCGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.07, C:0.00, G:0.73, T:0.20
Consensus pattern (9 bp):
GGTGGTGGG
Found at i:99121835 original size:6 final size:6
Alignment explanation
Indices: 99121811--99121854 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
99121801 TGGTAGTGGA
* * * *
99121811 GGAGGT GGAGGG GGTGGT GGGGGT GGTGGT GGAGGT GGAGGT GG
1 GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT GG
99121855 TGGCAGCTCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.09, C:0.00, G:0.73, T:0.18
Consensus pattern (6 bp):
GGAGGT
Found at i:99121919 original size:18 final size:18
Alignment explanation
Indices: 99121871--99121920 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
99121861 CTCCGGATCT
99121871 GGTAGTGGGTCTGGATATG
1 GGTA-TGGGTCTGGATATG
*
99121890 GGTCA-GGATCTGGATCA-G
1 GGT-ATGGGTCTGGAT-ATG
99121908 GGTATGGGTCTGG
1 GGTATGGGTCTGG
99121921 TGGTGGGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
17 1 0.04
18 20 0.77
19 4 0.15
20 1 0.04
ACGTcount: A:0.16, C:0.10, G:0.46, T:0.28
Consensus pattern (18 bp):
GGTATGGGTCTGGATATG
Found at i:99122075 original size:27 final size:27
Alignment explanation
Indices: 99122033--99122088 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
99122023 ATACGGAAGT
*
99122033 GGTGGTGGTAGAGGAGGAGGAGGAGGA
1 GGTGGTGGCAGAGGAGGAGGAGGAGGA
* * *
99122060 GGTGGTGGCAGTGGAGGTGGAGGTGGA
1 GGTGGTGGCAGAGGAGGAGGAGGAGGA
99122087 GG
1 GG
99122089 AGGAGGTGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.20, C:0.02, G:0.64, T:0.14
Consensus pattern (27 bp):
GGTGGTGGCAGAGGAGGAGGAGGAGGA
Found at i:99122095 original size:12 final size:12
Alignment explanation
Indices: 99122043--99122103 Score: 56
Period size: 12 Copynumber: 5.3 Consensus size: 12
99122033 GGTGGTGGTA
*
99122043 GAGGAGGAGGAG
1 GAGGAGGTGGAG
*
99122055 GAGGAGGTGG-T
1 GAGGAGGTGGAG
*
99122066 G-GCA-GTGGAG
1 GAGGAGGTGGAG
*
99122076 GTGGAGGTGGAG
1 GAGGAGGTGGAG
*
99122088 GAGGAGGTGGTG
1 GAGGAGGTGGAG
99122100 GAGG
1 GAGG
99122104 CAATGGTTCA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
9 4 0.10
10 3 0.08
11 3 0.08
12 29 0.74
ACGTcount: A:0.21, C:0.02, G:0.66, T:0.11
Consensus pattern (12 bp):
GAGGAGGTGGAG
Found at i:99122130 original size:18 final size:18
Alignment explanation
Indices: 99122105--99122157 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
99122095 TGGTGGAGGC
99122105 AATGGTTCAGGTTATGGA
1 AATGGTTCAGGTTATGGA
* *
99122123 AGTGGTTCAGGATATGGA
1 AATGGTTCAGGTTATGGA
*
99122141 AATGGGTCAGGTTATGG
1 AATGGTTCAGGTTATGG
99122158 TAGTAGTGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.26, C:0.06, G:0.38, T:0.30
Consensus pattern (18 bp):
AATGGTTCAGGTTATGGA
Found at i:99127128 original size:12 final size:12
Alignment explanation
Indices: 99127087--99127138 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
99127077 GGGATAGGAA
*
99127087 GTGGTGGAGGAG
1 GTGGTGGAGGCG
* *
99127099 GTGGTGGTGGCA
1 GTGGTGGAGGCG
* *
99127111 GCGGTGGCGGCG
1 GTGGTGGAGGCG
99127123 GTGGTGGAGGCG
1 GTGGTGGAGGCG
99127135 GTGG
1 GTGG
99127139 CAACGGAGGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.08, C:0.10, G:0.65, T:0.17
Consensus pattern (12 bp):
GTGGTGGAGGCG
Found at i:99127149 original size:21 final size:21
Alignment explanation
Indices: 99127111--99127150 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
99127101 GGTGGTGGCA
** *
99127111 GCGGTGGCGGCGGTGGTGGAG
1 GCGGTGGCAACGGAGGTGGAG
99127132 GCGGTGGCAACGGAGGTGG
1 GCGGTGGCAACGGAGGTGG
99127151 GTCGGGATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.10, C:0.15, G:0.62, T:0.12
Consensus pattern (21 bp):
GCGGTGGCAACGGAGGTGGAG
Found at i:99127221 original size:15 final size:15
Alignment explanation
Indices: 99127203--99127252 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
99127193 TAGAGGTAGA
99127203 GGTGGAGGAGGAGGT
1 GGTGGAGGAGGAGGT
*
99127218 GGTGGCA-GTGGAGGT
1 GGTGG-AGGAGGAGGT
* *
99127233 GGTGGTGGCGGAGGT
1 GGTGGAGGAGGAGGT
99127248 GGTGG
1 GGTGG
99127253 TCATGGAGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 29 0.97
16 1 0.03
ACGTcount: A:0.12, C:0.04, G:0.66, T:0.18
Consensus pattern (15 bp):
GGTGGAGGAGGAGGT
Found at i:99127263 original size:18 final size:17
Alignment explanation
Indices: 99127209--99127264 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 17
99127199 TAGAGGTGGA
99127209 GGAGGAGGTGGTGGCA-
1 GGAGGAGGTGGTGGCAT
*
99127225 -GTGGAGGTGGTGG--T
1 GGAGGAGGTGGTGGCAT
*
99127239 GGCGGAGGTGGTGGTCAT
1 GGAGGAGGTGGTGG-CAT
99127257 GGAGGAGG
1 GGAGGAGG
99127265 GTCAGGATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 24 0.75
18 8 0.25
ACGTcount: A:0.14, C:0.05, G:0.62, T:0.18
Consensus pattern (17 bp):
GGAGGAGGTGGTGGCAT
Found at i:99128900 original size:22 final size:20
Alignment explanation
Indices: 99128863--99128931 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 20
99128853 GATTAATATG
99128863 TAAATTATTGAAATTAATTTA
1 TAAATTATT-AAATTAATTTA
99128884 TAATACTTATTAAATTAATTTAA
1 TAA-A-TTATTAAATTAATTT-A
99128907 TAAATTATGTAAATT-ATATTA
1 TAAATTAT-TAAATTAAT-TTA
99128928 TAAA
1 TAAA
99128932 CTAAAAGTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
21 14 0.33
22 20 0.47
23 9 0.21
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (20 bp):
TAAATTATTAAATTAATTTA
Found at i:99130116 original size:21 final size:21
Alignment explanation
Indices: 99130086--99130126 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
99130076 ATACATATAT
*
99130086 TAAAACATAAAAGAAA-ATAAA
1 TAAAAAATAAAA-AAATATAAA
99130107 TAAAAAATAAAAAAATATAA
1 TAAAAAATAAAAAAATATAA
99130127 GAATATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (21 bp):
TAAAAAATAAAAAAATATAAA
Found at i:99130251 original size:11 final size:11
Alignment explanation
Indices: 99130232--99130266 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
99130222 CCCCTTCCCC
99130232 CTCCCTTCTCT
1 CTCCCTTCTCT
99130243 CTCCCTTCTCT
1 CTCCCTTCTCT
99130254 CTTCCC-TCTCT
1 C-TCCCTTCTCT
99130265 CT
1 CT
99130267 TCTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:99131283 original size:11 final size:11
Alignment explanation
Indices: 99131267--99131293 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
99131257 GTACGTATTG
99131267 TATATGTTCTA
1 TATATGTTCTA
99131278 TATATGTTCTA
1 TATATGTTCTA
99131289 TATAT
1 TATAT
99131294 TTTTAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (11 bp):
TATATGTTCTA
Found at i:99135181 original size:12 final size:12
Alignment explanation
Indices: 99135154--99135197 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
99135144 GTTAGGAAAG
99135154 GGAGGTGGT-G-
1 GGAGGTGGTGGC
99135164 GG-GGTGGTGGC
1 GGAGGTGGTGGC
*
99135175 GGAGGTGGAGGC
1 GGAGGTGGTGGC
99135187 GGAGGTGGTGG
1 GGAGGTGGTGG
99135198 AGGCTCTGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 6 0.21
10 3 0.10
11 2 0.07
12 18 0.62
ACGTcount: A:0.09, C:0.05, G:0.70, T:0.16
Consensus pattern (12 bp):
GGAGGTGGTGGC
Found at i:99135332 original size:18 final size:18
Alignment explanation
Indices: 99135281--99135326 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
99135271 GGGATAGGAA
*
99135281 GTGGTGGAGGAGGTGGTG
1 GTGGTGGAGGAGGTGGAG
* *
99135299 GTGGTAGCGGAGGTGGAG
1 GTGGTGGAGGAGGTGGAG
99135317 GTGGTGGAGG
1 GTGGTGGAGG
99135327 CAGTGGCAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.13, C:0.02, G:0.65, T:0.20
Consensus pattern (18 bp):
GTGGTGGAGGAGGTGGAG
Found at i:99135385 original size:18 final size:18
Alignment explanation
Indices: 99135364--99135398 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
99135354 TGGGTCTGGA
99135364 TCTGGATATGGAAGTGGG
1 TCTGGATATGGAAGTGGG
99135382 TCTGGATATGGAAGTGG
1 TCTGGATATGGAAGTGG
99135399 AGGTGGTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.43, T:0.29
Consensus pattern (18 bp):
TCTGGATATGGAAGTGGG
Found at i:99135433 original size:132 final size:126
Alignment explanation
Indices: 99135283--99135584 Score: 340
Period size: 132 Copynumber: 2.3 Consensus size: 126
99135273 GATAGGAAGT
* * * * *
99135283 GGTGGAGGAGGTGGTGGTGGTAGCGGAGGTGGAGGTGGTGGAGGCAGTGG-CAATGGAGGTGGGC
1 GGTGGAGGAGGAGGTGGTGGCAGTGGAGGTGGAGGTGGCGGAGGCAGTGGTC-ATGGAGGAGGGC
* * * * *
99135347 CGGGATATGGGTCTGGATCTGGATA-TGGAAGTGGGTCT-GGATATGGAAGTGGAGGTGGTAGAG
65 CGGGATATGGATCCGGATCCGGA-AGTGGAAGTGGGACTGGGA-ATGGAAATGGA---GGT---G
99135410 GTAGA
122 GTAGA
* * ** *
99135415 GGTGGAGGAGGAGGTGGTGGCAGTGGAGGTGGCGGTGGCAGAGGTGGTGGTCATGGAGGAGGGTC
1 GGTGGAGGAGGAGGTGGTGGCAGTGGAGGTGGAGGTGGCGGAGGCAGTGGTCATGGAGGAGGGCC
* *
99135480 GGGATATGGATCCGGATCCGGAAGTGGGAGTGGGACTGGGAGTGGAAATGGAGGTGGTAGA
66 GGGATATGGATCCGGATCCGGAAGTGGAAGTGGGACTGGGAATGGAAATGGAGGTGGTAGA
*
99135541 GGTGGAGGAGGAGGTGGTGGCAGTGGAGGTGGAGGAGGCGGAGG
1 GGTGGAGGAGGAGGTGGTGGCAGTGGAGGTGGAGGTGGCGGAGG
99135585 TGTAGGCAAT
Statistics
Matches: 147, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
126 47 0.32
129 3 0.02
131 1 0.01
132 92 0.63
133 4 0.03
ACGTcount: A:0.20, C:0.07, G:0.56, T:0.18
Consensus pattern (126 bp):
GGTGGAGGAGGAGGTGGTGGCAGTGGAGGTGGAGGTGGCGGAGGCAGTGGTCATGGAGGAGGGCC
GGGATATGGATCCGGATCCGGAAGTGGAAGTGGGACTGGGAATGGAAATGGAGGTGGTAGA
Found at i:99135463 original size:18 final size:18
Alignment explanation
Indices: 99135419--99135464 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
99135409 GGTAGAGGTG
* *
99135419 GAGGAGGAGGTGGTGGCA
1 GAGGAGGTGGCGGTGGCA
*
99135437 GTGGAGGTGGCGGTGGCA
1 GAGGAGGTGGCGGTGGCA
*
99135455 GAGGTGGTGG
1 GAGGAGGTGG
99135465 TCATGGAGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.15, C:0.07, G:0.63, T:0.15
Consensus pattern (18 bp):
GAGGAGGTGGCGGTGGCA
Found at i:99135553 original size:21 final size:21
Alignment explanation
Indices: 99135529--99135575 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
99135519 GAGTGGAAAT
99135529 GGAGGTGGTAG-AGGTGGAGGA
1 GGAGGTGGTAGCA-GTGGAGGA
* *
99135550 GGAGGTGGTGGCAGTGGAGGT
1 GGAGGTGGTAGCAGTGGAGGA
99135571 GGAGG
1 GGAGG
99135576 AGGCGGAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.19, C:0.02, G:0.64, T:0.15
Consensus pattern (21 bp):
GGAGGTGGTAGCAGTGGAGGA
Found at i:99139070 original size:26 final size:26
Alignment explanation
Indices: 99139041--99139101 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
99139031 CTCTTCATGC
*
99139041 ATTTAAAATTTAGATTTCATACTTTT
1 ATTTAAAATTTAAATTTCATACTTTT
99139067 ATTTAAAATTTAAATTTCATACTTTT
1 ATTTAAAATTTAAATTTCATACTTTT
*
99139093 ATTTTAAAT
1 ATTTAAAAT
99139102 AATTTAGTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.54
Consensus pattern (26 bp):
ATTTAAAATTTAAATTTCATACTTTT
Found at i:99141993 original size:18 final size:18
Alignment explanation
Indices: 99141972--99142008 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
99141962 ATATGGTTTC
99141972 GGGTCAGGATATGGAAGT
1 GGGTCAGGATATGGAAGT
**
99141990 GGGTTTGGATATGGAAGT
1 GGGTCAGGATATGGAAGT
99142008 G
1 G
99142009 AAGGCGATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.03, G:0.46, T:0.27
Consensus pattern (18 bp):
GGGTCAGGATATGGAAGT
Found at i:99142045 original size:18 final size:18
Alignment explanation
Indices: 99142024--99142066 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
99142014 GATAGTGCTA
99142024 GTGGTGGTGGAGGAGGAG
1 GTGGTGGTGGAGGAGGAG
* *
99142042 GTGGTGGTGGCGGTGGAG
1 GTGGTGGTGGAGGAGGAG
99142060 GTGGTGG
1 GTGGTGG
99142067 CAGTGGAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.09, C:0.02, G:0.67, T:0.21
Consensus pattern (18 bp):
GTGGTGGTGGAGGAGGAG
Found at i:99142060 original size:105 final size:105
Alignment explanation
Indices: 99141972--99142757 Score: 553
Period size: 99 Copynumber: 7.3 Consensus size: 105
99141962 ATATGGTTTC
* * * *
99141972 GGGTCAGGATATGGAAGTGGGTTTGGATATGGAAGTGAAGGCGATAGTGCTA-GTGGTGGTGGAG
1 GGGTCAGGATACGGAAGTGGATCTGGATATAGAAGTGAAGGCGATAGTGC-AGGTGGTGGTGGAG
* * * *
99142036 GAGGAGGTGGTGGTGGCGGTGGAGGTGGTGGCAGTGGAGGA
65 GAGGAGGTGGCGGTGGAGGTGGAGGTCGTGGCAATGGAGGA
* * * *
99142077 GGGTCCGGATACGGAAGTGGATCTGGATATAGAAGTGGAGGTGGTAGTGCAGGTGGTGGTGGAGG
1 GGGTCAGGATACGGAAGTGGATCTGGATATAGAAGTGAAGGCGATAGTGCAGGTGGTGGTGGAGG
*
99142142 AGGAGGTGGCGGTGGAGGT----G--GTGGCAGTGGAGGA
66 AGGAGGTGGCGGTGGAGGTGGAGGTCGTGGCAATGGAGGA
* * * *
99142176 GGGTTC-GGATACGGAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCTAGTGGTGGTGGTG
1 GGG-TCAGGATACGGAAGTGGATCTGGATATAGAAGTGAAGGCGATAGTGC-A-----GGTGGTG
* * * *
99142240 GTGGAGGAGGAAGAGGAGGAGGAGGTGGCGGTGGAGGTGGTGGCAATGGAGGA
59 GT---GGA-G--GAGGAGGTGGCGGTGGAGGTGGAGGTCGTGGCAATGGAGGA
* * * *
99142293 GGGTTC-GGATACGGAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCTAGTGGTGGTGGTG
1 GGG-TCAGGATACGGAAGTGGATCTGGATATAGAAGTGAAGGCGATAGTGC-A--GGTGGTGGTG
* * * * * * * * *
99142357 GTGGTGGAGGAGGAGGTGGCGGTGGTGGTGGTGGCAGTGGAAGA
62 GAGGAGGAGGTGGCGGTGGAGGTGGAGGTCGTGGCAATGGAGGA
* * * * *
99142401 GGGTCCGGATACGGAAGTGGATCTGGATATAGAAGTGGAGGTGGTAGTGCTGGTGGTGGTGGAGG
1 GGGTCAGGATACGGAAGTGGATCTGGATATAGAAGTGAAGGCGATAGTGCAGGTGGTGGTGGAGG
*
99142466 AGGAGGTGGCGGTGGAGGT----G--GTGGCAGTGGAGGA
66 AGGAGGTGGCGGTGGAGGTGGAGGTCGTGGCAATGGAGGA
* * * *
99142500 GGGTTC-GGATACGGAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCTAGTGGTGGTGGTG
1 GGG-TCAGGATACGGAAGTGGATCTGGATATAGAAGTGAAGGCGATAGTGC-A-----GGTGGTG
* * * *
99142564 GTGGAGGAGGAGAGAGGAGGAGGTGGCGGTGGAGGTGGTGGCAATGGAGGA
59 GT---GGAGGAG-GAGGTGGCGGTGGAGGTGGAGGTCGTGGCAATGGAGGA
* * * *
99142615 GGGTTC-GGATACGGAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCTAGTGGTGGTGGTG
1 GGG-TCAGGATACGGAAGTGGATCTGGATATAGAAGTGAAGGCGATAGTGC-A--------GGTG
* * * **
99142679 GTGGTGGAGGAGGAGGTGGCGGTGGTGGAGGTGGAGGTGGCAATGGAGGA
56 GTGGTGGAGGAGGAGGTGGCGGTGGAGGTGGAGGTCGTGGCAATGGAGGA
* ***
99142729 GGGTCAGGATATGGGTTTGGATCTGGATA
1 GGGTCAGGATACGGAAGTGGATCTGGATA
99142758 CGGAAGTGGA
Statistics
Matches: 595, Mismatches: 44, Indels: 75
0.83 0.06 0.11
Matches are distributed among these distances:
99 119 0.20
100 5 0.01
101 2 0.00
104 1 0.00
105 118 0.20
107 2 0.00
108 93 0.16
109 15 0.03
110 1 0.00
111 19 0.03
113 3 0.01
114 65 0.11
115 73 0.12
117 65 0.11
118 14 0.02
ACGTcount: A:0.20, C:0.06, G:0.53, T:0.21
Consensus pattern (105 bp):
GGGTCAGGATACGGAAGTGGATCTGGATATAGAAGTGAAGGCGATAGTGCAGGTGGTGGTGGAGG
AGGAGGTGGCGGTGGAGGTGGAGGTCGTGGCAATGGAGGA
Found at i:99142062 original size:15 final size:15
Alignment explanation
Indices: 99142044--99142075 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
99142034 AGGAGGAGGT
*
99142044 GGTGGTGGCGGTGGA
1 GGTGGTGGCAGTGGA
99142059 GGTGGTGGCAGTGGA
1 GGTGGTGGCAGTGGA
99142074 GG
1 GG
99142076 AGGGTCCGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.06, G:0.66, T:0.19
Consensus pattern (15 bp):
GGTGGTGGCAGTGGA
Found at i:99142120 original size:6 final size:6
Alignment explanation
Indices: 99142111--99142162 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
99142101 GGATATAGAA
* * * *
99142111 GTGGAG GTGGTA- GTGCAG GTGGTG GTGGAG GAGGAG GTGGCG GTGGAG
1 GTGGAG GTGG-AG GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG
99142159 GTGG
1 GTGG
99142163 TGGCAGTGGA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
5 1 0.03
6 34 0.94
7 1 0.03
ACGTcount: A:0.13, C:0.04, G:0.63, T:0.19
Consensus pattern (6 bp):
GTGGAG
Found at i:99142166 original size:15 final size:15
Alignment explanation
Indices: 99142127--99142174 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
99142117 GTGGTAGTGC
* *
99142127 AGGTGGTGGTGGAGG
1 AGGTGGTGGCGGTGG
*
99142142 AGGAGGTGGCGGTGG
1 AGGTGGTGGCGGTGG
*
99142157 AGGTGGTGGCAGTGG
1 AGGTGGTGGCGGTGG
99142172 AGG
1 AGG
99142175 AGGGTTCGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.15, C:0.04, G:0.65, T:0.17
Consensus pattern (15 bp):
AGGTGGTGGCGGTGG
Found at i:99142210 original size:117 final size:111
Alignment explanation
Indices: 99142083--99142802 Score: 716
Period size: 117 Copynumber: 6.5 Consensus size: 111
99142073 AGGAGGGTCC
* *
99142083 GGATACGGAAGTGGATCTGGATATAGAAGTGGAGGTGGTAGTGCAGGTGGTGGTGGAGGAGGAGG
1 GGATATGGAAGTGGA--TGG-TAT-GTAGTGGAGGTGGT-GTG-AGGTGGTGGTGGAGGAGGAGG
99142148 TGGCGGTGGAGGTGGTGGCAGTGGAGGAGGGTTCGGATACGGAAGTGGATCT
60 TGGCGGTGGAGGTGGTGGCAGTGGAGGAGGGTTCGGATACGGAAGTGGATCT
* * ** *
99142200 GGATATGGAAGTGGAGGTGGTAGTGCTAGTGGTGGTGGTGGTGGAGGAGGAAGAGGAGGAGGAGG
1 GGATATGGAAGTGGA--TGGTA-TG-TAGTGGAGGTGGT-GT-GAGGTGGTGGTGGAGGAGGAGG
*
99142265 TGGCGGTGGAGGTGGTGGCAATGGAGGAGGGTTCGGATACGGAAGTGGATCT
60 TGGCGGTGGAGGTGGTGGCAGTGGAGGAGGGTTCGGATACGGAAGTGGATCT
* * *
99142317 GGATATGGAAGTGGA-GGT-GGTAGTGCTA-GTGGTG-GTGGTGGTGGTGGAGGAGGAGGTGGCG
1 GGATATGGAAGTGGATGGTATGTAGTG-GAGGTGGTGTGAGGTGGTGGTGGAGGAGGAGGTGGCG
* * *
99142378 GTGGTGGTGGTGGCAGTGGAAGAGGGTCCGGATACGGAAGTGGATCT
65 GTGGAGGTGGTGGCAGTGGAGGAGGGTTCGGATACGGAAGTGGATCT
* *
99142425 GGATATAGAAGTGGA-GG--TG--GT--A-GT-G-CT--GGTGGTGGTGGAGGAGGAGGTGGCGG
1 GGATATGGAAGTGGATGGTATGTAGTGGAGGTGGTGTGAGGTGGTGGTGGAGGAGGAGGTGGCGG
99142478 TGGAGGTGGTGGCAGTGGAGGAGGGTTCGGATACGGAAGTGGATCT
66 TGGAGGTGGTGGCAGTGGAGGAGGGTTCGGATACGGAAGTGGATCT
* * * * *
99142524 GGATATGGAAGTGGAGGTGGTAGTGCTAGTGGTGGTGGTG-GTGGAGGAGGAGAGAGGAGGAGGT
1 GGATATGGAAGTGGA--TGGTA-TG-TAGTGGAGGTGGTGTGAGGTGGTGGTG-GAGGAGGAGGT
*
99142588 GGCGGTGGAGGTGGTGGCAATGGAGGAGGGTTCGGATACGGAAGTGGATCT
61 GGCGGTGGAGGTGGTGGCAGTGGAGGAGGGTTCGGATACGGAAGTGGATCT
* * *
99142639 GGATATGGAAGTGGA-GGT-GGTAGTGCTA-GTGGTG-GTGGTGGTGGTGGAGGAGGAGGTGGCG
1 GGATATGGAAGTGGATGGTATGTAGTG-GAGGTGGTGTGAGGTGGTGGTGGAGGAGGAGGTGGC-
* * ***
99142700 GTGGTGGAGGTGGAGGTGGCAATGGAGGAGGG-TCAGGATATGGGTTTGGATCT
64 --GGTGGAGGT---GGTGGCAGTGGAGGAGGGTTC-GGATACGGAAGTGGATCT
* * ** *
99142753 GGATACGGAAGTGGA-GGTA-GTGGAAGAGGTGGTG-GTGGTGGTGGTGGAGG
1 GGATATGGAAGTGGATGGTATGTAGTGGAGGTGGTGTGAGGTGGTGGTGGAGG
99142803 TGGTAGAGGT
Statistics
Matches: 520, Mismatches: 51, Indels: 67
0.82 0.08 0.11
Matches are distributed among these distances:
99 83 0.16
101 1 0.00
102 5 0.01
105 4 0.01
107 1 0.00
108 97 0.19
109 20 0.04
110 2 0.00
111 21 0.04
112 5 0.01
113 3 0.01
114 84 0.16
115 76 0.15
116 3 0.01
117 114 0.22
118 1 0.00
ACGTcount: A:0.20, C:0.05, G:0.54, T:0.21
Consensus pattern (111 bp):
GGATATGGAAGTGGATGGTATGTAGTGGAGGTGGTGTGAGGTGGTGGTGGAGGAGGAGGTGGCGG
TGGAGGTGGTGGCAGTGGAGGAGGGTTCGGATACGGAAGTGGATCT
Found at i:99142275 original size:15 final size:15
Alignment explanation
Indices: 99142233--99142294 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
99142223 TGCTAGTGGT
*
99142233 GGTGGTGGTGGAGGA
1 GGTGGCGGTGGAGGA
** * *
99142248 GGAAGAGGAGGAGGA
1 GGTGGCGGTGGAGGA
*
99142263 GGTGGCGGTGGAGGT
1 GGTGGCGGTGGAGGA
**
99142278 GGTGGCAATGGAGGA
1 GGTGGCGGTGGAGGA
99142293 GG
1 GG
99142295 GTTCGGATAC
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.21, C:0.03, G:0.63, T:0.13
Consensus pattern (15 bp):
GGTGGCGGTGGAGGA
Found at i:99142353 original size:3 final size:3
Alignment explanation
Indices: 99142345--99142390 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
99142335 GGTAGTGCTA
* * * *
99142345 GTG GTG GTG GTG GTG GTG GAG GAG GAG GTG GCG GTG GTG GTG GTG G
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG G
99142391 CAGTGGAAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.07, C:0.02, G:0.67, T:0.24
Consensus pattern (3 bp):
GTG
Found at i:99142490 original size:15 final size:15
Alignment explanation
Indices: 99142452--99142498 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
99142442 TGGTAGTGCT
* *
99142452 GGTGGTGGTGGAGGA
1 GGTGGTGGCGGTGGA
*
99142467 GGAGGTGGCGGTGGA
1 GGTGGTGGCGGTGGA
*
99142482 GGTGGTGGCAGTGGA
1 GGTGGTGGCGGTGGA
99142497 GG
1 GG
99142499 AGGGTTCGGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.13, C:0.04, G:0.66, T:0.17
Consensus pattern (15 bp):
GGTGGTGGCGGTGGA
Found at i:99142675 original size:3 final size:3
Alignment explanation
Indices: 99142667--99142718 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
99142657 GGTAGTGCTA
* * * * * *
99142667 GTG GTG GTG GTG GTG GTG GAG GAG GAG GTG GCG GTG GTG GAG GTG GAG
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
99142715 GTG G
1 GTG G
99142719 CAATGGAGGA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.10, C:0.02, G:0.67, T:0.21
Consensus pattern (3 bp):
GTG
Found at i:99142696 original size:21 final size:21
Alignment explanation
Indices: 99142672--99142719 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
99142662 TGCTAGTGGT
*
99142672 GGTGGTGGTGGTGGAGGAGGA
1 GGTGGCGGTGGTGGAGGAGGA
*
99142693 GGTGGCGGTGGTGGAGGTGGA
1 GGTGGCGGTGGTGGAGGAGGA
99142714 GGTGGC
1 GGTGGC
99142720 AATGGAGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.10, C:0.04, G:0.67, T:0.19
Consensus pattern (21 bp):
GGTGGCGGTGGTGGAGGAGGA
Found at i:99142729 original size:21 final size:21
Alignment explanation
Indices: 99142684--99142730 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
99142674 TGGTGGTGGT
** *
99142684 GGAGGAGGAGGTGGCGGTGGT
1 GGAGGAGGAGGTGGCAATGGA
*
99142705 GGAGGTGGAGGTGGCAATGGA
1 GGAGGAGGAGGTGGCAATGGA
99142726 GGAGG
1 GGAGG
99142731 GTCAGGATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.04, G:0.64, T:0.13
Consensus pattern (21 bp):
GGAGGAGGAGGTGGCAATGGA
Found at i:99142788 original size:3 final size:3
Alignment explanation
Indices: 99142780--99142820 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
99142770 TAGTGGAAGA
* * *
99142780 GGT GGT GGT GGT GGT GGT GGA GGT GGT AGA GGT GGT GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
99142821 CAATGAAGGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.07, C:0.00, G:0.66, T:0.27
Consensus pattern (3 bp):
GGT
Found at i:99142889 original size:102 final size:102
Alignment explanation
Indices: 99142693--99142898 Score: 254
Period size: 102 Copynumber: 2.0 Consensus size: 102
99142683 TGGAGGAGGA
* * * * ** *
99142693 GGTGGCGGTGGTGGAGGTGGAGGTGGCAATGGAGGAGGGTCAGGATATGGGTTTGGATCTGGATA
1 GGTGGAGGTGGTAGAGGTGGAGGTGGCAATGAAGGAGGGTCAAGATATGGGTCCGGATATGGATA
* *
99142758 CGGAAGTGGAGGTAGTGGAAGAGGTGGTGGTGGTGGT
66 CGGAAGTGGAGGTAGAGGAAGAGGAGGTGGTGGTGGT
*
99142795 GGTGGAGGTGGTAGAGGTGGTGGTGGCAATGAAGGAGGGTCAAGATATGGGTCCGGATATGGA-A
1 GGTGGAGGTGGTAGAGGTGGAGGTGGCAATGAAGGAGGGTCAAGATATGGGTCCGGATATGGATA
* * * *
99142859 GTGGAGGTGGCA-GTGGAGGAGGAGGAGGTGGTGGTGGT
66 -CGGAAGTGG-AGGTAGAGGAAGAGGAGGTGGTGGTGGT
99142897 GG
1 GG
99142899 AAGAGGAAGA
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
101 1 0.01
102 86 0.98
103 1 0.01
ACGTcount: A:0.20, C:0.05, G:0.54, T:0.21
Consensus pattern (102 bp):
GGTGGAGGTGGTAGAGGTGGAGGTGGCAATGAAGGAGGGTCAAGATATGGGTCCGGATATGGATA
CGGAAGTGGAGGTAGAGGAAGAGGAGGTGGTGGTGGT
Found at i:99142895 original size:21 final size:21
Alignment explanation
Indices: 99142855--99142917 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
99142845 GTCCGGATAT
* **
99142855 GGAAGTGGAGGTGGCAGTGGA
1 GGAAGAGGAGGTGGTGGTGGA
* *
99142876 GGAGGAGGAGGTGGTGGTGGT
1 GGAAGAGGAGGTGGTGGTGGA
* *
99142897 GGAAGAGGAAGAGGTGGTGGA
1 GGAAGAGGAGGTGGTGGTGGA
99142918 AGTGGAGGCA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.24, C:0.02, G:0.60, T:0.14
Consensus pattern (21 bp):
GGAAGAGGAGGTGGTGGTGGA
Found at i:99142898 original size:24 final size:24
Alignment explanation
Indices: 99142855--99142925 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 24
99142845 GTCCGGATAT
* * *
99142855 GGAAGTGGAGGTGGCAGTGGAGGA
1 GGAAGAGGTGGTGGAAGTGGAGGA
* ** *
99142879 GGAGGAGGTGGTGGTGGTGGAAGA
1 GGAAGAGGTGGTGGAAGTGGAGGA
99142903 GGAAGAGGTGGTGGAAGTGGAGG
1 GGAAGAGGTGGTGGAAGTGGAGG
99142926 CAATGACTCA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.24, C:0.01, G:0.61, T:0.14
Consensus pattern (24 bp):
GGAAGAGGTGGTGGAAGTGGAGGA
Found at i:99142916 original size:102 final size:99
Alignment explanation
Indices: 99142706--99142913 Score: 242
Period size: 99 Copynumber: 2.1 Consensus size: 99
99142696 GGCGGTGGTG
* * *
99142706 GAGGTGGAGGTGGCAATGGAGGAGGGTCAGGATATGGGTTTGGATCTGGATACGGAAGTGGAGGT
1 GAGGTGGAGGTGGCAATGAAGGAGGGTCAAGATAT-GG--TGGATCCGGATACGGAAGTGGAGGT
* * * * *
99142771 AGTGGAAGAGGTGGTGGTGGTGGTGGTGGAGGTGGTA
63 AGTGGAAGAGGAGGAGGTGGTGGTGGTGGAAGAGGAA
* *
99142808 GAGGTGGTGGTGGCAATGAAGGAGGGTCAAGATAT-G-GG-TCCGGATATGGAAGTGGAGGTGGC
1 GAGGTGGAGGTGGCAATGAAGGAGGGTCAAGATATGGTGGATCCGGATACGGAAGTGGAGGT---
*
99142870 AGTGGAGGAGGAGGAGGTGGTGGTGGTGGAAGAGGAA
63 AGTGGAAGAGGAGGAGGTGGTGGTGGTGGAAGAGGAA
99142907 GAGGTGG
1 GAGGTGG
99142914 TGGAAGTGGA
Statistics
Matches: 92, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
96 19 0.21
97 2 0.02
99 38 0.41
100 1 0.01
102 32 0.35
ACGTcount: A:0.23, C:0.04, G:0.53, T:0.20
Consensus pattern (99 bp):
GAGGTGGAGGTGGCAATGAAGGAGGGTCAAGATATGGTGGATCCGGATACGGAAGTGGAGGTAGT
GGAAGAGGAGGAGGTGGTGGTGGTGGAAGAGGAA
Found at i:99145398 original size:29 final size:29
Alignment explanation
Indices: 99145333--99145419 Score: 102
Period size: 29 Copynumber: 2.9 Consensus size: 29
99145323 CACCACTGAT
** **
99145333 ACATAGTAACTGATAAATATAACACTAGC
1 ACATAGTGCCTGATAAATATAACACCGGC
99145362 ACATAGTGCCTGATAAATATAACACCGGC
1 ACATAGTGCCTGATAAATATAACACCGGC
* *
99145391 ACATAGTGCCTTATACAACATGAACACCG
1 ACATAGTGCCTGATA-AATAT-AACACCG
99145420 TACAAAGTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
29 39 0.78
30 4 0.08
31 7 0.14
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22
Consensus pattern (29 bp):
ACATAGTGCCTGATAAATATAACACCGGC
Found at i:99154119 original size:21 final size:21
Alignment explanation
Indices: 99154079--99154119 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
99154069 AAAAAGTCAA
*
99154079 TAACATGAATTTGTCTAACCT
1 TAACATGAATTTGTCGAACCT
99154100 TAACATGAA-TTGATCGAACC
1 TAACATGAATTTG-TCGAACC
99154120 CAAGTTGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.32
Consensus pattern (21 bp):
TAACATGAATTTGTCGAACCT
Found at i:99157523 original size:30 final size:30
Alignment explanation
Indices: 99157489--99157555 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
99157479 CTCCTAAGTC
*
99157489 ATTTTTATAATTATTTAATTTGTTAGGTTA
1 ATTTTGATAATTATTTAATTTGTTAGGTTA
99157519 ATTTTGATAATTATTTAATTTGTTAGGTTA
1 ATTTTGATAATTATTTAATTTGTTAGGTTA
99157549 ATTTTGA
1 ATTTTGA
99157556 AAAAAAGCTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (30 bp):
ATTTTGATAATTATTTAATTTGTTAGGTTA
Found at i:99159966 original size:10 final size:10
Alignment explanation
Indices: 99159951--99159983 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
99159941 ATAACAATCA
99159951 ATCCTAAAAT
1 ATCCTAAAAT
99159961 ATCCTAAAAT
1 ATCCTAAAAT
99159971 ATTCCTAAAAT
1 A-TCCTAAAAT
99159982 AT
1 AT
99159984 AATAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (10 bp):
ATCCTAAAAT
Found at i:99159978 original size:11 final size:11
Alignment explanation
Indices: 99159952--99159983 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
99159942 TAACAATCAA
99159952 TCCTAAAATA-
1 TCCTAAAATAT
99159962 TCCTAAAATAT
1 TCCTAAAATAT
99159973 TCCTAAAATAT
1 TCCTAAAATAT
99159984 AATAATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
TCCTAAAATAT
Found at i:99161833 original size:3 final size:3
Alignment explanation
Indices: 99161825--99161849 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
99161815 TCAACTAATC
99161825 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
99161850 TTTCAAACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:99169896 original size:132 final size:132
Alignment explanation
Indices: 99169659--99169901 Score: 339
Period size: 132 Copynumber: 1.8 Consensus size: 132
99169649 AACGGAGATG
* * * *
99169659 ATGTTCGATGTTTGACAATTCGGGGAATCGTGCCCTACTATGCTGGGTTGCAATTTCTCGTTTGC
1 ATGTTCGATGTTTGACAATTCGGGGAATAGTGCCCTACTATGCTGGGTTGCAATCTCCCATTTGC
* *
99169724 TCAAAATAATCGAATATCTCTTTAGAATTCCATTCATGTTTTCTAAAAACTTTTTAAAATGAAGG
66 TCAAAATAATCGAATATCCCTTGAGAATTCCATTCATGTTTTCTAAAAACTTTTTAAAATGAAGG
99169789 AA
131 AA
*
99169791 ATGTTCGATGTTT-AGCAATTCGGGGAATAGTGCCCTA-TCGTGCTGGGTTGCAATCTCCCATTT
1 ATGTTCGATGTTTGA-CAATTCGGGGAATAGTGCCCTACT-ATGCTGGGTTGCAATCTCCCATTT
* * * *
99169854 GTTCAAAATAATCGAATATCCCTTCGA-AATTTCGTTCGTGTTTTCTAA
64 GCTCAAAATAATCGAATATCCCTT-GAGAATTCCATTCATGTTTTCTAA
99169902 GGCGAGGCAA
Statistics
Matches: 97, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
131 2 0.02
132 94 0.97
133 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (132 bp):
ATGTTCGATGTTTGACAATTCGGGGAATAGTGCCCTACTATGCTGGGTTGCAATCTCCCATTTGC
TCAAAATAATCGAATATCCCTTGAGAATTCCATTCATGTTTTCTAAAAACTTTTTAAAATGAAGG
AA
Found at i:99170603 original size:28 final size:26
Alignment explanation
Indices: 99170564--99170615 Score: 61
Period size: 26 Copynumber: 1.9 Consensus size: 26
99170554 TTAAAATCTA
*
99170564 AATCCATATACTCTTATATTTGAAATTT
1 AATCCATATACT-TT-TATTTCAAATTT
99170592 AATCC-TACTACTTTTATTTCAAAT
1 AATCCATA-TACTTTTATTTCAAAT
99170616 AATTTAGTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 9 0.41
27 4 0.18
28 9 0.41
ACGTcount: A:0.35, C:0.17, G:0.02, T:0.46
Consensus pattern (26 bp):
AATCCATATACTTTTATTTCAAATTT
Found at i:99172695 original size:45 final size:44
Alignment explanation
Indices: 99172535--99172754 Score: 239
Period size: 44 Copynumber: 4.9 Consensus size: 44
99172525 AAATACTTTA
* * *
99172535 GAAGCCACAATCCTTATCTCTCTGAAGTTGCAGTGGAGTAGATC
1 GAAGTCACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * * * * *
99172579 GAAGCCACAATGCTTATCTCTCTGAAGTTGTAGTAGAGCAGGATA
1 GAAGTCACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATC
* * *
99172624 AAATTACCCAAGT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGA-C
1 GAAGT-CACAA-TCCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
*
99172668 TGAAGTTAGCAGAT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
1 -GAAGTCA-CA-ATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
*
99172714 GAAGTCACAATCCTTATCTCCCTGAAGTTGCAGTGGGGCAG
1 GAAGTCACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAG
99172755 TTGCAATAGA
Statistics
Matches: 149, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
43 2 0.01
44 66 0.44
45 49 0.33
46 31 0.21
47 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (44 bp):
GAAGTCACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
Found at i:99178527 original size:27 final size:29
Alignment explanation
Indices: 99178496--99178560 Score: 91
Period size: 27 Copynumber: 2.3 Consensus size: 29
99178486 GGTATTTTTT
*
99178496 TAATTTGATATC-TAAATTTTTTT-AGCC
1 TAATTTGATAGCTTAAATTTTTTTGAGCC
*
99178523 TAATTTGAT-GCTTAAATTTTTTTGGGCC
1 TAATTTGATAGCTTAAATTTTTTTGAGCC
99178551 TAATTTGATA
1 TAATTTGATA
99178561 CTTGAACTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 1 0.03
27 20 0.61
28 12 0.36
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (29 bp):
TAATTTGATAGCTTAAATTTTTTTGAGCC
Found at i:99185687 original size:37 final size:37
Alignment explanation
Indices: 99185646--99185727 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 37
99185636 AAATATTTAT
* * *
99185646 TAATCAATGTTCAAACTTTGAACATGCTTTATTAAAC
1 TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
*
99185683 TAATCAATGCTAAAACTTTGAACATGCTTTAATGAAC
1 TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
99185720 TAATCAAT
1 TAATCAAT
99185728 ACTTAACAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (37 bp):
TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
Found at i:99185799 original size:33 final size:33
Alignment explanation
Indices: 99185762--99185837 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
99185752 TTAAAACTTG
*
99185762 AATTATACATATACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
99185795 AATTATACATACACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
99185828 AATTATACAT
1 AATTATACAT
99185838 GCTTTATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (33 bp):
AATTATACATACACCAACAATTAATTTTAGGTC
Found at i:99189177 original size:66 final size:62
Alignment explanation
Indices: 99189121--99189911 Score: 289
Period size: 64 Copynumber: 13.1 Consensus size: 62
99189111 TATGTTAATT
99189121 TATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAA
1 TATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAA
* * * * * * * *
99189183 GAATTTTTTA-A--AT--TATA-TA-G-TTTAATTAAAATATATTTAATAATAATT-A-TGTTAA
1 -TATATTTTACAGTATCATATATTATGATTTGAGTAAATTA-ATATAAGAAT-ATTAATTATTAA
99189238 TTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAA
1 --TATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAA
* * * * * * * *
99189302 GAATTTTTTA-A--AT--TATA-TA-G-TTTAATTAAAATATATTTAATAATAATT-A-TGTTAA
1 -TATATTTTACAGTATCATATATTATGATTTGAGTAAATTA-ATATAAGAAT-ATTAATTATTAA
* *
99189357 TTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATT-ATCCAATTA
1 --TATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAAT--TATTA
99189421 A
62 A
* * * * * * * * *
99189422 GA-A-TTT-CATTA-AAT-TA-TAT-ATTTTAATTAAAATATATTTAATAATAATT-A-TGTTAA
1 TATATTTTACAGTATCATATATTATGA-TTTGAGTAAATTA-ATATAAGAAT-ATTAATTATTAA
* *
99189478 TTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATT-ATCCAATTA
1 --TATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAAT--TATTA
99189542 A
62 A
* * * * * * * * *
99189543 GA-A-TTT-CATTA-AAT-TA-TAT-ATTTTAATTAAAATATATTTAATAATAATT-A-TGTTAA
1 TATATTTTACAGTATCATATATTATGA-TTTGAGTAAATTA-ATATAAGAAT-ATTAATTATTAA
* *
99189599 TTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATT-ATCCAATTA
1 --TATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAAT--TATTA
99189663 A
62 A
* * * * * * * * *
99189664 GA-A-TTT-CATTA-AAT-TA-TAT-ATTTTAATTAAAATATATTTAATAATAATT-A-TGTTAA
1 TATATTTTACAGTATCATATATTATGA-TTTGAGTAAATTA-ATATAAGAAT-ATTAATTATTAA
*
99189720 TTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAA
1 --TATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAA
* * * * * * * * *
99189784 GA-A-TTT-CATTA-AAT-TA-TAT-ATTTTAATTAAAATATATTTAATAATAATT-A-TGTTAA
1 TATATTTTACAGTATCATATATTATGA-TTTGAGTAAATTA-ATATAAGAAT-ATTAATTATTAA
*
99189840 TTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAA
1 --TATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAA
*
99189904 GA-ATTTTA
1 TATATTTTA
99189912 TTAAATTATA
Statistics
Matches: 529, Mismatches: 114, Indels: 172
0.65 0.14 0.21
Matches are distributed among these distances:
55 31 0.06
56 67 0.13
57 62 0.12
58 47 0.09
59 30 0.06
60 31 0.06
61 40 0.08
62 40 0.08
63 78 0.15
64 87 0.16
65 16 0.03
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.47
Consensus pattern (62 bp):
TATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAA
Found at i:99189507 original size:121 final size:119
Alignment explanation
Indices: 99188857--99189957 Score: 1931
Period size: 121 Copynumber: 9.2 Consensus size: 119
99188847 TTTTCAAGTT
*
99188857 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
99188922 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATATTTTAATTAAA
*
99188976 ATA-ATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* * *
99189040 TAATATAAGAACATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATATTTTAATTAAA
*
99189094 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
99189159 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATATTTTAATTAAA
*
99189213 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
99189278 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATATTTTAATTAAA
99189332 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
99189397 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTT-ATTAAATTATATATTTTAATTAAA
99189453 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
99189518 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTT-ATTAAATTATATATTTTAATTAAA
99189574 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
99189639 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTT-ATTAAATTATATATTTTAATTAAA
99189695 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
99189760 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTT-ATTAAATTATATATTTTAATTAAA
99189815 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
99189880 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAA-TTTATTAAATTATATATTTTAATTAAA
99189935 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
99189958 TAAATATGAT
Statistics
Matches: 969, Mismatches: 7, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
118 119 0.12
119 315 0.33
120 186 0.19
121 347 0.36
122 2 0.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (119 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATATTTTAATTAAA
Found at i:99189934 original size:18 final size:17
Alignment explanation
Indices: 99189906--99189940 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
99189896 ATTATTAAGA
*
99189906 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
99189923 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
99189941 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Done.