Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 314 of 325
Found at i:99190170 original size:44 final size:45
Alignment explanation
Indices: 99190105--99190195 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
99190095 ACCTCTATTC
* * *
99190105 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
99190149 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
99190194 CA
1 CA
99190196 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:99190197 original size:16 final size:16
Alignment explanation
Indices: 99190176--99190244 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
99190166 GATTAGCTAT
99190176 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
99190192 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
99190209 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
99190225 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
99190241 TACA
1 TACA
99190245 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:99190218 original size:33 final size:32
Alignment explanation
Indices: 99190176--99190244 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
99190166 GATTAGCTAT
99190176 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
99190209 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
99190241 TACA
1 TACA
99190245 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:99194099 original size:24 final size:24
Alignment explanation
Indices: 99194065--99194118 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
99194055 AAAGAAAAAG
99194065 AGAGAGGGAAAAAAGGAATAAGTCT
1 AGAG-GGGAAAAAAGGAATAAGTCT
99194090 AGAGGGGAAAAAAGGAATAAGTCT
1 AGAGGGGAAAAAAGGAATAAGTCT
99194114 AGAGG
1 AGAGG
99194119 TTACTATCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 25 0.86
25 4 0.14
ACGTcount: A:0.50, C:0.04, G:0.35, T:0.11
Consensus pattern (24 bp):
AGAGGGGAAAAAAGGAATAAGTCT
Found at i:99199734 original size:29 final size:28
Alignment explanation
Indices: 99199694--99199785 Score: 84
Period size: 29 Copynumber: 3.3 Consensus size: 28
99199684 ATGTTATAAT
*
99199694 TATTTTATTACATGTTATTTATTTTATA
1 TATTTTATTACATATTATTTATTTTATA
*
99199722 TATTATTATTACATATTATGTA--TTATA
1 TATT-TTATTACATATTATTTATTTTATA
* * *
99199749 CATTTTA-TATATATT-TTTATTATTTTA
1 TATTTTATTACATATTATTTATT-TTATA
99199776 TATTATTATT
1 TATT-TTATT
99199786 TATATACATA
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
24 3 0.06
25 7 0.14
26 3 0.06
27 15 0.29
28 7 0.14
29 16 0.31
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (28 bp):
TATTTTATTACATATTATTTATTTTATA
Found at i:99199745 original size:7 final size:7
Alignment explanation
Indices: 99199676--99199932 Score: 70
Period size: 7 Copynumber: 35.9 Consensus size: 7
99199666 TTTATTTTCT
99199676 TATATTA
1 TATATTA
*
99199683 TATGTTA
1 TATATTA
99199690 TA-ATTA
1 TATATTA
*
99199696 TTTTATTA
1 -TATATTA
* *
99199704 CATGTTA
1 TATATTA
*
99199711 TTTATTTTA
1 --TATATTA
99199720 TATATTA
1 TATATTA
99199727 T-TATTA
1 TATATTA
*
99199733 CATATTA
1 TATATTA
*
99199740 TGTATTA
1 TATATTA
* *
99199747 TACATTT
1 TATATTA
99199754 TATA-TA
1 TATATTA
*
99199760 TAT-TTT
1 TATATTA
*
99199766 TATTATTT
1 TA-TATTA
99199774 TATATTA
1 TATATTA
99199781 T-TATT-
1 TATATTA
*
99199786 TATATACA
1 TATAT-TA
99199794 TATATTA
1 TATATTA
*
99199801 TTATCCTTA
1 -TAT-ATTA
99199810 -ACTATTA
1 TA-TATTA
*
99199817 TATTTTA
1 TATATTA
99199824 T-TAATTA
1 TAT-ATTA
99199831 -ATTACTTA
1 TA-TA-TTA
*
99199839 TATACTA
1 TATATTA
*
99199846 TATATTG
1 TATATTA
*
99199853 TA-ATTT
1 TATATTA
* *
99199859 TAAACCTA
1 TATA-TTA
*
99199867 TATACTTT
1 TATA-TTA
99199875 TATATTA
1 TATATTA
99199882 TATATTA
1 TATATTA
99199889 TATAATTA
1 TAT-ATTA
*
99199897 TTTTATT-
1 -TATATTA
99199904 TACTATGTA
1 TA-TAT-TA
99199913 TATTATT-
1 TA-TATTA
*
99199920 TATTTTA
1 TATATTA
99199927 TATATT
1 TATATT
99199933 TTTTAAAAAT
Statistics
Matches: 182, Mismatches: 40, Indels: 56
0.65 0.14 0.20
Matches are distributed among these distances:
5 1 0.01
6 32 0.18
7 89 0.49
8 44 0.24
9 16 0.09
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (7 bp):
TATATTA
Found at i:99199748 original size:57 final size:58
Alignment explanation
Indices: 99199695--99199804 Score: 142
Period size: 56 Copynumber: 2.0 Consensus size: 58
99199685 TGTTATAATT
99199695 ATTTTAT-TACATGTTAT-TTATTTTATA-TATTA-TTAT-TACATATTATGTATTATAC
1 ATTTTATATACAT-TTATATTATTTTATATTATTATTTATATACATATTAT-TATTATAC
* *
99199750 ATTTTATATATATTTTTATTATTTTATATTATTATTTATATACATA-TATTATTAT
1 ATTTTATATACATTTATATTATTTTATATTATTATTTATATACATATTATTATTAT
99199805 CCTTAACTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
55 10 0.21
56 14 0.29
57 11 0.23
58 7 0.15
59 6 0.12
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (58 bp):
ATTTTATATACATTTATATTATTTTATATTATTATTTATATACATATTATTATTATAC
Found at i:99199775 original size:20 final size:20
Alignment explanation
Indices: 99199711--99199788 Score: 63
Period size: 20 Copynumber: 3.9 Consensus size: 20
99199701 TTACATGTTA
*
99199711 TTTATTTTA-TATATTATTAT
1 TTTATATTATTAT-TTATTAT
** *
99199731 TACATATTATGTA-TTATACAT
1 TTTATATTAT-TATTTAT-TAT
99199752 TTTATATATATT-TTTATTAT
1 TTTATAT-TATTATTTATTAT
99199772 TTTATATTATTATTTAT
1 TTTATATTATTATTTAT
99199789 ATACATATAT
Statistics
Matches: 45, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
19 4 0.09
20 24 0.53
21 12 0.27
22 5 0.11
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (20 bp):
TTTATATTATTATTTATTAT
Found at i:99199783 original size:13 final size:13
Alignment explanation
Indices: 99199712--99199790 Score: 74
Period size: 13 Copynumber: 6.1 Consensus size: 13
99199702 TACATGTTAT
99199712 TTATT-TTATATA
1 TTATTATTATATA
*
99199724 TTATTATTACATA
1 TTATTATTATATA
*
99199737 TTATGTATTATACA
1 TTAT-TATTATATA
*
99199751 TT-TTATATATATTT
1 TTATTAT-TATA-TA
*
99199765 TTATTATTTTATA
1 TTATTATTATATA
99199778 TTATTATT-TATA
1 TTATTATTATATA
99199790 T
1 T
99199791 ACATATATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
12 13 0.24
13 24 0.44
14 14 0.25
15 4 0.07
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (13 bp):
TTATTATTATATA
Found at i:99199902 original size:25 final size:26
Alignment explanation
Indices: 99199872--99199929 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
99199862 ACCTATATAC
*
99199872 TTTTATATTA-TATAT-TATATAATTA
1 TTTTATATTACTATGTATAT-TAATTA
*
99199897 TTTTAT-TTACTATGTATATTATTTA
1 TTTTATATTACTATGTATATTAATTA
99199922 TTTTATAT
1 TTTTATAT
99199930 ATTTTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 3 0.11
25 21 0.75
26 4 0.14
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTTATATTACTATGTATATTAATTA
Found at i:99200041 original size:28 final size:30
Alignment explanation
Indices: 99199995--99200050 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 30
99199985 TTTTTTATGC
* *
99199995 ATTATTTTATTCTAAATT-ATT-TTTTAAA
1 ATTACTTTATTATAAATTAATTCTTTTAAA
*
99200023 ATTACTTTATTATATATTAATTCTTTTA
1 ATTACTTTATTATAAATTAATTCTTTTA
99200051 TATTTTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 15 0.65
29 3 0.13
30 5 0.22
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (30 bp):
ATTACTTTATTATAAATTAATTCTTTTAAA
Found at i:99201313 original size:26 final size:26
Alignment explanation
Indices: 99201239--99201350 Score: 134
Period size: 26 Copynumber: 4.2 Consensus size: 26
99201229 AAGAAAGCCT
* * *
99201239 AAAGAAAAGCATTTGCGGCTTAATAAG
1 AAAG-AAAGCCTTTGCGGCGTAATATG
* * *
99201266 AAAGAAAAGTCATTGCGACGTAATATG
1 AAAG-AAAGCCTTTGCGGCGTAATATG
*
99201293 AAAGAAAGCCTTTGTGGCGTAATATG
1 AAAGAAAGCCTTTGCGGCGTAATATG
*
99201319 AAAGAAAGCCTTTGTGGCGTAATATG
1 AAAGAAAGCCTTTGCGGCGTAATATG
99201345 AAAGAA
1 AAAGAA
99201351 TGTCATTGTG
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 50 0.67
27 25 0.33
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.23
Consensus pattern (26 bp):
AAAGAAAGCCTTTGCGGCGTAATATG
Found at i:99201359 original size:26 final size:26
Alignment explanation
Indices: 99201259--99201362 Score: 127
Period size: 26 Copynumber: 4.0 Consensus size: 26
99201249 ATTTGCGGCT
* * * *
99201259 TAATAAGAAAGAAAAGTCATTGCGACG
1 TAATATGAAAG-AAAGCCATTGTGGCG
*
99201286 TAATATGAAAGAAAGCCTTTGTGGCG
1 TAATATGAAAGAAAGCCATTGTGGCG
*
99201312 TAATATGAAAGAAAGCCTTTGTGGCG
1 TAATATGAAAGAAAGCCATTGTGGCG
* *
99201338 TAATATGAAAGAATGTCATTGTGGC
1 TAATATGAAAGAAAGCCATTGTGGC
99201363 AAACTTCGTA
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
26 59 0.86
27 10 0.14
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (26 bp):
TAATATGAAAGAAAGCCATTGTGGCG
Found at i:99206290 original size:8 final size:8
Alignment explanation
Indices: 99206269--99206464 Score: 51
Period size: 8 Copynumber: 22.6 Consensus size: 8
99206259 TTTTATTTTC
99206269 AAATATATA
1 AAATATA-A
99206278 AAATATAA
1 AAATATAA
99206286 AAATATATA
1 AAATATA-A
*
99206295 CAAT-TAA
1 AAATATAA
99206302 AAATATATA
1 AAATATA-A
*
99206311 GAAA-ACAA
1 -AAATATAA
99206319 ATAATATTTTAA
1 A-AATA---TAA
99206331 AAATATAA
1 AAATATAA
*
99206339 AAA-ATTACG
1 AAATA-TA-A
99206348 AAATAT-A
1 AAATATAA
* *
99206355 ATATATAT
1 AAATATAA
*
99206363 AAATAAAA
1 AAATATAA
*
99206371 AAATCTAA
1 AAATATAA
*
99206379 AATTTTATAA
1 AA--ATATAA
**
99206389 ATCTATAA
1 AAATATAA
99206397 AAATGTATAA
1 AAA--TATAA
*
99206407 ATATATAA
1 AAATATAA
99206415 AAGA-ACTAA
1 AA-ATA-TAA
99206424 AAATTTATAA
1 AAA--TATAA
**
99206434 ATTTATAAA
1 AAATAT-AA
*
99206443 AAATATAT
1 AAATATAA
99206451 AAATATATA
1 AAATATA-A
99206460 AAATA
1 AAATA
99206465 ACTAAAAAAT
Statistics
Matches: 136, Mismatches: 27, Indels: 48
0.64 0.13 0.23
Matches are distributed among these distances:
7 11 0.08
8 61 0.45
9 36 0.26
10 20 0.15
11 5 0.04
12 3 0.02
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (8 bp):
AAATATAA
Found at i:99206304 original size:16 final size:17
Alignment explanation
Indices: 99206269--99206462 Score: 98
Period size: 19 Copynumber: 11.1 Consensus size: 17
99206259 TTTTATTTTC
99206269 AAATATATAAAATATAA
1 AAATATATAAAATATAA
*
99206286 AAATATATACAAT-TAA
1 AAATATATAAAATATAA
*
99206302 AAATATATAGAAA-ACAA
1 AAATATATA-AAATATAA
*
99206319 ATAATATTTTAAAAATATAA
1 A-AATA-TAT-AAAATATAA
99206339 AAA-AT-TACGAAATAT-A
1 AAATATATA--AAATATAA
*
99206355 ATATATAT-AAATA-AA
1 AAATATATAAAATATAA
* * *
99206370 AAA-ATCTAAAATTTTAT
1 AAATATATAAAA-TATAA
* * *
99206387 AAATCTATAAAAATGTAT
1 AAATATAT-AAAATATAA
*
99206405 AAATATATAAAAGAACTAA
1 AAATATATAAAA-TA-TAA
* *
99206424 AAATTTATAAATTTATAAA
1 AAATATATAAA-ATAT-AA
99206443 AAATATATAAATATATAA
1 AAATATATAAA-ATATAA
99206461 AA
1 AA
99206463 TAACTAAAAA
Statistics
Matches: 135, Mismatches: 22, Indels: 39
0.69 0.11 0.20
Matches are distributed among these distances:
14 3 0.02
15 12 0.09
16 17 0.13
17 34 0.25
18 24 0.18
19 40 0.30
20 5 0.04
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.31
Consensus pattern (17 bp):
AAATATATAAAATATAA
Found at i:99206408 original size:27 final size:27
Alignment explanation
Indices: 99206369--99206443 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
99206359 ATATAAATAA
* *
99206369 AAAAATCTA-AAATTTTATAAATCTA-T
1 AAAAATCTATAAA-TTTATAAAACAACT
* * *
99206395 AAAAATGTATAAATATATAAAAGAACT
1 AAAAATCTATAAATTTATAAAACAACT
*
99206422 AAAAATTTATAAATTTATAAAA
1 AAAAATCTATAAATTTATAAAA
99206444 AATATATAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 16 0.40
27 24 0.60
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (27 bp):
AAAAATCTATAAATTTATAAAACAACT
Found at i:99206445 original size:46 final size:45
Alignment explanation
Indices: 99206355--99206472 Score: 155
Period size: 46 Copynumber: 2.6 Consensus size: 45
99206345 ACGAAATATA
* * *
99206355 ATATATATAAATAAAAAAATCTAAAATTTTATAAATCTATAAAAAT
1 ATATAAATATATAAAAAAA-CTAAAAATTTATAAATCTATAAAAAT
* * *
99206401 GTATAAATATATAAAAGAACTAAAAATTTATAAATTTATAAAAAAT
1 ATATAAATATATAAAAAAACTAAAAATTTATAAATCTAT-AAAAAT
*
99206447 ATATAAATATATAAAATAACTAAAAA
1 ATATAAATATATAAAAAAACTAAAAA
99206473 ATACATCTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 18 0.29
46 45 0.71
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (45 bp):
ATATAAATATATAAAAAAACTAAAAATTTATAAATCTATAAAAAT
Found at i:99206454 original size:27 final size:26
Alignment explanation
Indices: 99206396--99206475 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
99206386 TAAATCTATA
* *
99206396 AAAATGTATAAATATATAAAAGAACTA-
1 AAAATATATAAATTTATAAAA-AA-TAT
*
99206423 AAAATTTATAAATTTATAAAAAATAT
1 AAAATATATAAATTTATAAAAAATAT
* *
99206449 ATAAATATATAAAATAACTAAAAAATA
1 A-AAATATATAAATTTA-TAAAAAATA
99206476 CATCTATAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.04
26 3 0.07
27 31 0.69
28 9 0.20
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (26 bp):
AAAATATATAAATTTATAAAAAATAT
Found at i:99206470 original size:17 final size:17
Alignment explanation
Indices: 99206269--99206464 Score: 59
Period size: 16 Copynumber: 11.3 Consensus size: 17
99206259 TTTTATTTTC
99206269 AAATATATAAA-ATATAA
1 AAATATATAAATATA-AA
99206286 AAATATATACAAT-T-AA
1 AAATATATA-AATATAAA
* *
99206302 AAATATATAGAAAACAAA
1 AAATATATA-AATATAAA
* *
99206320 TAATATTTTAAAAATATAAA
1 -AA-A-TATATAAATATAAA
*
99206340 AAAT-TACGAAATAT--A
1 AAATATA-TAAATATAAA
*
99206355 ATATATATAAATA-AAA
1 AAATATATAAATATAAA
* * * *
99206371 AAATCTA-AAATTTTAT
1 AAATATATAAATATAAA
* * * *
99206387 AAATCTATAAAAATGTAT
1 AAATATATAAATAT-AAA
*
99206405 AAATATATAAA-AGAACTAA
1 AAATATATAAATA-TA--AA
*
99206424 AAATTTATAAATTTATAAA
1 AAATATATAAA--TATAAA
*
99206443 AAATATATAAATATATA
1 AAATATATAAATATAAA
99206460 AAATA
1 AAATA
99206465 ACTAAAAAAT
Statistics
Matches: 134, Mismatches: 25, Indels: 40
0.67 0.13 0.20
Matches are distributed among these distances:
15 13 0.10
16 31 0.23
17 31 0.23
18 19 0.14
19 27 0.20
20 7 0.05
21 5 0.04
22 1 0.01
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (17 bp):
AAATATATAAATATAAA
Found at i:99207983 original size:50 final size:50
Alignment explanation
Indices: 99207908--99208010 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
99207898 ATGATATTAG
99207908 GTTGTGTTTGTTCTAGGGAAATTGGTAAGAGTGGTTTTATGTTTTCACAA
1 GTTGTGTTTGTTCTAGGGAAATTGGTAAGAGTGGTTTTATGTTTTCACAA
99207958 GTTGTGTTTGTTCTAGGGAAATTGGTAAGAGTGGTTTTATGTTTTCACAA
1 GTTGTGTTTGTTCTAGGGAAATTGGTAAGAGTGGTTTTATGTTTTCACAA
99208008 GTT
1 GTT
99208011 TAAAGAGTAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.21, C:0.06, G:0.28, T:0.45
Consensus pattern (50 bp):
GTTGTGTTTGTTCTAGGGAAATTGGTAAGAGTGGTTTTATGTTTTCACAA
Found at i:99213569 original size:19 final size:20
Alignment explanation
Indices: 99213532--99213572 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
99213522 CAAATATTGA
*
99213532 TTTATATTTTATACCTTAAT
1 TTTAAATTTTATACCTTAAT
*
99213552 TTTAAATTTTA-ACTTTAAT
1 TTTAAATTTTATACCTTAAT
99213571 TT
1 TT
99213573 ACTTAAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTAAATTTTATACCTTAAT
Found at i:99223750 original size:15 final size:15
Alignment explanation
Indices: 99223730--99223761 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
99223720 TTATTATATG
99223730 TGTACTATAATAAGT
1 TGTACTATAATAAGT
99223745 TGTACTATAATAAGT
1 TGTACTATAATAAGT
99223760 TG
1 TG
99223762 AATATTTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.41
Consensus pattern (15 bp):
TGTACTATAATAAGT
Found at i:99223805 original size:3 final size:3
Alignment explanation
Indices: 99223797--99223845 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
99223787 ATAGCATGAC
99223797 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
99223845 A
1 A
99223846 CTAGAAATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:99224874 original size:21 final size:21
Alignment explanation
Indices: 99224850--99224893 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
99224840 TCAATTGATT
99224850 CAACCCTTTTATTCATGCTAA
1 CAACCCTTTTATTCATGCTAA
99224871 CAACCCTTTTATTCATGCTAA
1 CAACCCTTTTATTCATGCTAA
99224892 CA
1 CA
99224894 TACCAATCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.36
Consensus pattern (21 bp):
CAACCCTTTTATTCATGCTAA
Found at i:99234648 original size:30 final size:31
Alignment explanation
Indices: 99234614--99234682 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
99234604 TTCAATCTTC
* *
99234614 AATCTTTC-AATATTCTC-TCAATTTCTCTCA
1 AATCTTTCAAAT-TTCTCTTAAATTCCTCTCA
*
99234644 AATCTCTCAAATTTCTCTTAAATTCCTCTCA
1 AATCTTTCAAATTTCTCTTAAATTCCTCTCA
*
99234675 AAACTTTC
1 AATCTTTC
99234683 GTTAATTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 12 0.38
31 20 0.62
ACGTcount: A:0.29, C:0.28, G:0.00, T:0.43
Consensus pattern (31 bp):
AATCTTTCAAATTTCTCTTAAATTCCTCTCA
Found at i:99234651 original size:11 final size:10
Alignment explanation
Indices: 99234620--99234676 Score: 62
Period size: 11 Copynumber: 5.5 Consensus size: 10
99234610 CTTCAATCTT
99234620 TCAATATTCTC
1 TCAA-ATTCTC
*
99234631 TCAATTTCTC
1 TCAAATTCTC
99234641 TCAAA-TCTC
1 TCAAATTCTC
99234650 TCAAATTTCTC
1 TCAAA-TTCTC
*
99234661 TTAAATTCCTC
1 TCAAATT-CTC
99234672 TCAAA
1 TCAAA
99234677 ACTTTCGTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 9 0.23
10 11 0.28
11 19 0.49
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.42
Consensus pattern (10 bp):
TCAAATTCTC
Found at i:99234658 original size:20 final size:21
Alignment explanation
Indices: 99234620--99234676 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
99234610 CTTCAATCTT
99234620 TCAATATTCTCTC-AATTTCTC
1 TCAA-ATTCTCTCAAATTTCTC
99234641 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTTCTC
*
99234661 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
99234677 ACTTTCGTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
19 6 0.19
20 13 0.41
21 5 0.16
22 8 0.25
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.42
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTTCTC
Found at i:99234732 original size:16 final size:15
Alignment explanation
Indices: 99234703--99234733 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
99234693 TCAAAAAAGC
*
99234703 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
99234718 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
99234733 T
1 T
99234734 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:99238079 original size:126 final size:126
Alignment explanation
Indices: 99237849--99238388 Score: 767
Period size: 126 Copynumber: 4.3 Consensus size: 126
99237839 GCCCAAGTTA
* * *
99237849 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
99237914 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTATGCAGACACGCCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACGCAGACACGTCTTCTCAAAATTATTT
* * * * * * *
99237975 TTTCAGAGACCACTGTAGCAAAAGAGCATACGCGTGGGAGCTTCTTCCAGTAATTTTGCTAAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* * *
99238040 TGCATCCTACTTGAAGCGTTTTT-ACCATTATTTGCGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTACGCAGACACGTCTTCTCAAAATTATTT
* * *
99238101 TTTCAGAGACTACTGTAGCAAAATAGTGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* * * *
99238166 TGCATCCTGCTTGAAGCGTTTTTTACACTATTTGCACAGACACATCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACGCAGACACGTCTTCTCAAAATTATTT
* * * ** *
99238227 TTTCAGATACTACTGTAGCAAAAAGAGGGTCCACGTAGGAGCTTCTTTTGGTACTTTTGCTGACA
1 TTTCAGAGACTACTGTAGC-AAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAA
* * *
99238292 ATGCATCCTGCTTGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTTAAATTTATTT
65 ATGCATCCTGCTTGAAGCGTTTTTGACACTATTTACGCAGACACGTCTTCTCAAAATTATTT
*
99238354 TATCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
99238389 AGAAGCTTTT
Statistics
Matches: 368, Mismatches: 43, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
125 1 0.00
126 254 0.69
127 113 0.31
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (126 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACGCAGACACGTCTTCTCAAAATTATTT
Found at i:99238492 original size:15 final size:15
Alignment explanation
Indices: 99238472--99238501 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
99238462 TTTCTTAAAT
99238472 ACCCTAAAACCCTAA
1 ACCCTAAAACCCTAA
*
99238487 ACCCTAAAATCCTAA
1 ACCCTAAAACCCTAA
99238502 TCTAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (15 bp):
ACCCTAAAACCCTAA
Found at i:99238675 original size:96 final size:97
Alignment explanation
Indices: 99238476--99238681 Score: 269
Period size: 96 Copynumber: 2.1 Consensus size: 97
99238466 TTAAATACCC
* * *
99238476 TAAAACCCTAAACCCTAAAATCCTAATCTAATTTTTTTAAAATTTATAATTAATTTACTCAAGTA
1 TAAAACCCTAAACACTAAAATCCTAATCTAATTTTTTTAAAATTTATAATTAATTTAATCAAGCA
* *
99238541 AGCCTAAACCCTAATTTATTTGATTTTTTCCT
66 AACCTAAACCCTAATTTATTTAATTTTTTCCT
* *
99238573 TAAAAACCATAAACACT-AAA-CCATAATCTAA-TTTTTTAAAA-TTAGTAATTAATTTAATTAA
1 T-AAAACCCTAAACACTAAAATCC-TAATCTAATTTTTTTAAAATTTA-TAATTAATTTAATCAA
99238634 -CAAACACTAAACCCTAATTTATTTAATTTTTTTCCT
63 GCAAAC-CTAAACCCTAATTTATTTAA-TTTTTTCCT
99238670 TAAAACCCTAAA
1 TAAAACCCTAAA
99238682 ATTTAAAAAT
Statistics
Matches: 96, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
95 6 0.06
96 55 0.57
97 22 0.23
98 13 0.14
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.39
Consensus pattern (97 bp):
TAAAACCCTAAACACTAAAATCCTAATCTAATTTTTTTAAAATTTATAATTAATTTAATCAAGCA
AACCTAAACCCTAATTTATTTAATTTTTTCCT
Found at i:99239318 original size:29 final size:29
Alignment explanation
Indices: 99239286--99239349 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
99239276 CCAAATTAAA
*
99239286 CACCCCATTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
99239315 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
99239344 CACCCC
1 CACCCC
99239350 CACACCCTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.31, C:0.50, G:0.02, T:0.17
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:99239356 original size:37 final size:37
Alignment explanation
Indices: 99239315--99239386 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
99239305 CTAACTCCAT
99239315 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
*
99239352 CACCCTACTAAACCATCCACTACCTTCATCACCCC
1 CACCCTACTAAACCATCCACTACCTCCATCACCCC
99239387 TACTAACTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.29, C:0.53, G:0.00, T:0.18
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:99239814 original size:19 final size:18
Alignment explanation
Indices: 99239790--99239826 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
99239780 TTATGTTTCA
99239790 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
99239809 TATTATTATATATTTATT
1 TATTATTATATATTTATT
99239827 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:99239838 original size:17 final size:14
Alignment explanation
Indices: 99239798--99239828 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
99239788 CATATTATTA
*
99239798 TATTATTTATTTAT
1 TATTATATATTTAT
99239812 TATTATATATTTAT
1 TATTATATATTTAT
99239826 TAT
1 TAT
99239829 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:99241119 original size:11 final size:11
Alignment explanation
Indices: 99241089--99241121 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
99241079 TTGATATGTT
99241089 AATGAAGAGAA
1 AATGAAGAGAA
99241100 AAT-AAGAGAA
1 AATGAAGAGAA
*
99241110 AGTGAAGAGAA
1 AATGAAGAGAA
99241121 A
1 A
99241122 TAGTGTAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:99242885 original size:46 final size:46
Alignment explanation
Indices: 99242838--99243111 Score: 352
Period size: 46 Copynumber: 6.0 Consensus size: 46
99242828 GCTCTCTGAT
** * * *
99242838 ATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACCTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
99242884 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
99242930 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
99242976 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
99243022 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGAAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
99243068 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
99243112 TCAAAGATAA
Statistics
Matches: 204, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 203 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:99242991 original size:92 final size:92
Alignment explanation
Indices: 99242834--99243106 Score: 393
Period size: 92 Copynumber: 3.0 Consensus size: 92
99242824 GTGTGCTCTC
* ** * * * * *
99242834 TGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGA
99242899 CCATGGTTGAAAGATACCATGGCAACG
66 CCATGGTTGAAAGATACCATGGCAACG
* * *
99242926 TGATATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAGA
1 TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGA
99242991 CCATGGTTGAAAGATACCATGGCAACG
66 CCATGGTTGAAAGATACCATGGCAACG
* * *
99243018 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGAAACATGACAGAAAATGAGTAAGA
1 TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGA
* * *
99243083 CCATAGTTGAAAGACACTATGGCA
66 CCATGGTTGAAAGATACCATGGCA
99243107 TCATGTCAAA
Statistics
Matches: 162, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 162 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (92 bp):
TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGA
CCATGGTTGAAAGATACCATGGCAACG
Found at i:99244280 original size:126 final size:126
Alignment explanation
Indices: 99244045--99244288 Score: 407
Period size: 126 Copynumber: 1.9 Consensus size: 126
99244035 CATTGATCTT
* * * *
99244045 CTCTCAAAATTTTTCAAAATAAAGGTAATGTTCGGTATTAAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTAAAAGAATTCGAAAAATCGTGCCCTA
*
99244110 ATGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATACCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATACCCTCTTACCAGTTCA
*
99244171 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAAAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTAAAAGAATTCGAAAAATCGTGCCCTA
* * *
99244236 ACGTACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTTGAATATCCTCTTA
66 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATACCCTCTTA
99244289 AGGCTAAAAC
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 109 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTAAAAGAATTCGAAAAATCGTGCCCTA
ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATACCCTCTTACCAGTTCA
Found at i:99245882 original size:21 final size:21
Alignment explanation
Indices: 99245852--99245896 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
99245842 AAGGGATAAG
*
99245852 ATGCTGGAATCCCAGAGA-AAC
1 ATGCTAGAATCCCAGA-ACAAC
99245873 ATGCTAGAATCCCAGAACAAC
1 ATGCTAGAATCCCAGAACAAC
99245894 ATG
1 ATG
99245897 ATAAGTCAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.16
Consensus pattern (21 bp):
ATGCTAGAATCCCAGAACAAC
Found at i:99248509 original size:15 final size:14
Alignment explanation
Indices: 99248477--99248557 Score: 55
Period size: 15 Copynumber: 5.9 Consensus size: 14
99248467 TTTCACTTTC
99248477 AAAAAAAAAAAGAG
1 AAAAAAAAAAAGAG
**
99248491 -AAAAAGGAAAGAG
1 AAAAAAAAAAAGAG
*
99248504 AAAAAAGGAAAAG-G
1 AAAAAA-AAAAAGAG
*
99248518 ---AAAAATAAGAG
1 AAAAAAAAAAAGAG
99248529 AAAAACAAAAAAGAG
1 AAAAA-AAAAAAGAG
99248544 AAAGAAAAGAAAAG
1 AAA-AAAA-AAAAG
99248558 CAAATGAGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
10 4 0.08
11 4 0.08
13 11 0.21
14 8 0.15
15 18 0.35
16 7 0.13
ACGTcount: A:0.77, C:0.01, G:0.21, T:0.01
Consensus pattern (14 bp):
AAAAAAAAAAAGAG
Found at i:99248521 original size:13 final size:13
Alignment explanation
Indices: 99248484--99248522 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
99248474 TTCAAAAAAA
99248484 AAAAGAGAAAAAGG
1 AAAAG-GAAAAAGG
*
99248498 AAAGAGAAAAAAGG
1 AAA-AGGAAAAAGG
99248512 AAAAGGAAAAA
1 AAAAGGAAAAA
99248523 TAAGAGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 7 0.32
14 13 0.59
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AAAAGGAAAAAGG
Found at i:99248522 original size:14 final size:14
Alignment explanation
Indices: 99248485--99248514 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
99248475 TCAAAAAAAA
99248485 AAAGAG-AAAAAGG
1 AAAGAGAAAAAAGG
99248498 AAAGAGAAAAAAGG
1 AAAGAGAAAAAAGG
99248512 AAA
1 AAA
99248515 AGGAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (14 bp):
AAAGAGAAAAAAGG
Found at i:99249944 original size:46 final size:46
Alignment explanation
Indices: 99249827--99250404 Score: 178
Period size: 46 Copynumber: 13.0 Consensus size: 46
99249817 AGCCTTATCC
* ** * * * *
99249827 CACTGAGCAGGAGTGGAACAGGCTAAATATAG-CAGATCTCATC-C
1 CACTGAGCAGGAGTGGAGCAGATTAAATTTCGACAGATCTTATCTT
** *
99249871 CACTG-GCAGGAGTGGAATAGATCAAATTTCGACAGATCTTATCTT
1 CACTGAGCAGGAGTGGAGCAGATTAAATTTCGACAGATCTTATCTT
* * * * * *
99249916 CGCTGAGCAGGAGTGGAGCAGATTAAATTTTGGCAAATCTTACCTC
1 CACTGAGCAGGAGTGGAGCAGATTAAATTTCGACAGATCTTATCTT
* * ** * * *
99249962 CA-TGTATC-GGCAATGGAGCAGATTTCA--GCTACCAG-CCTTATCTT
1 CACTG-AGCAGG-AGTGGAGCAGATTAAATTTCGA-CAGATCTTATCTT
* ** * * *
99250006 CACTGAGCAGGAGTGAAGCAGGCTAAATATAG-CAGATC-TAT-TCC
1 CACTGAGCAGGAGTGGAGCAGATTAAATTTCGACAGATCTTATCT-T
* * * *
99250050 CATTG-GCTGGAGTGGAACAGATCAAATTTCGACAGATCTTATCTT
1 CACTGAGCAGGAGTGGAGCAGATTAAATTTCGACAGATCTTATCTT
* * * * *
99250095 CGCTGAGCAGGAGTGGAGCAGATCAAATTTTGGC-GAATCTTATCTC
1 CACTGAGCAGGAGTGGAGCAGATTAAATTTCGACAG-ATCTTATCTT
* ** * * * * *
99250141 CA-TGTATC-GGCTA-TGGAGCAGATTTCA--GCCACAAACCTTATC-C
1 CACTG-AGCAGG--AGTGGAGCAGATTAAATTTCGACAGATCTTATCTT
* * * * *
99250184 CACTGAGCAGGAGTGGAACAGATTACAA-ATAG-CAGATCTCATC-C
1 CACTGAGCAGGAGTGGAGCAGATTA-AATTTCGACAGATCTTATCTT
* * * * * *
99250228 CACTG-GCAGGAGTGGAACAGATCAAATTTCAACGGATCTTGTCTC
1 CACTGAGCAGGAGTGGAGCAGATTAAATTTCGACAGATCTTATCTT
* * ** * *
99250273 CA-TGTATC-GGCAATGGAGCAGATTTCA--GCCACCAG-TCTTATCTT
1 CACTG-AGCAGG-AGTGGAGCAGATTAAATTTCGA-CAGATCTTATCTT
** * *
99250317 CACTGAGCAGGAGTGGAGCAGGCTAAA-CTC--TAGATCTTATCTT
1 CACTGAGCAGGAGTGGAGCAGATTAAATTTCGACAGATCTTATCTT
* *
99250360 CGCTGAGCAGGAGTGGAGCAGATCAAAATTT-GAC-GAATCTTATCT
1 CACTGAGCAGGAGTGGAGCAGAT-TAAATTTCGACAG-ATCTTATCT
99250405 CTATGTATTG
Statistics
Matches: 380, Mismatches: 112, Indels: 82
0.66 0.20 0.14
Matches are distributed among these distances:
42 5 0.01
43 102 0.27
44 115 0.30
45 40 0.11
46 117 0.31
47 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (46 bp):
CACTGAGCAGGAGTGGAGCAGATTAAATTTCGACAGATCTTATCTT
Found at i:99250115 original size:89 final size:88
Alignment explanation
Indices: 99249829--99250115 Score: 271
Period size: 89 Copynumber: 3.2 Consensus size: 88
99249819 CCTTATCCCA
* * *
99249829 CTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCA-TCCCACTGGCAGGAGTGGAATAGAT
1 CTGAGCAGGAGTGGAGCAGGCTAAATATAGCAGATCT-ATTCCCA-TGGCTGGAGTGGAACAGAT
99249893 CAAATTTCGACAGATCTTATCTTCG
64 CAAATTTCGACAGATCTTATCTTCG
** * * * * ** * *
99249918 CTGAGCAGGAGTGGAGCAGATTAAATTTTGGCAAATCT-TACCTCCATGTATCGGCAATGGAGCA
1 CTGAGCAGGAGTGGAGCAGGCTAAA-TATAGCAGATCTAT-TC-CCATGGCT-GG-AGTGGAACA
** * * *
99249982 GATTTC-AGCTAC--CAG-CCTTATCTTCA
61 GA--TCAAATTTCGACAGATCTTATCTTCG
*
99250008 CTGAGCAGGAGTGAAGCAGGCTAAATATAGCAGATCTATTCCCATTGGCTGGAGTGGAACAGATC
1 CTGAGCAGGAGTGGAGCAGGCTAAATATAGCAGATCTATTCCCA-TGGCTGGAGTGGAACAGATC
99250073 AAATTTCGACAGATCTTATCTTCG
65 AAATTTCGACAGATCTTATCTTCG
99250097 CTGAGCAGGAGTGGAGCAG
1 CTGAGCAGGAGTGGAGCAG
99250116 ATCAAATTTT
Statistics
Matches: 149, Mismatches: 35, Indels: 28
0.70 0.17 0.13
Matches are distributed among these distances:
85 2 0.01
86 3 0.02
87 9 0.06
88 8 0.05
89 62 0.42
90 44 0.30
91 8 0.05
92 8 0.05
93 3 0.02
94 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (88 bp):
CTGAGCAGGAGTGGAGCAGGCTAAATATAGCAGATCTATTCCCATGGCTGGAGTGGAACAGATCA
AATTTCGACAGATCTTATCTTCG
Found at i:99250127 original size:179 final size:178
Alignment explanation
Indices: 99249815--99250267 Score: 714
Period size: 179 Copynumber: 2.5 Consensus size: 178
99249805 CAGATTTCGG
99249815 CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAG
1 CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAG
* *
99249880 GAGTGGAATAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATTAAATT
66 GAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAATT
*
99249945 TTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCTA
131 TTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCA
* * *
99249993 CCAGCCTTATCTTCACTGAGCAGGAGT-GAAGCAGGCTAAATATAGCAGATCT-ATTCCCATTGG
1 CAAGCCTTATC-CCACTGAGCAGGAGTGGAA-CAGGCTAAATATAGCAGATCTCA-TCCCACTGG
*
99250056 CTGGAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAA
63 CAGGAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAA
* * *
99250121 ATTTTGGCGAATCTTATCTCCATGTATCGGCTATGGAGCAGATTTCAGCCA
128 ATTTTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCA
* **
99250172 CAAACCTTATCCCACTGAGCAGGAGTGGAACAGATTACAA-ATAGCAGATCTCATCCCACTGGCA
1 CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTA-AATATAGCAGATCTCATCCCACTGGCA
* *
99250236 GGAGTGGAACAGATCAAATTTCAACGGATCTT
65 GGAGTGGAACAGATCAAATTTCGACAGATCTT
99250268 GTCTCCATGT
Statistics
Matches: 250, Mismatches: 19, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
178 83 0.33
179 167 0.67
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (178 bp):
CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAG
GAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAATT
TTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCA
Found at i:99250190 original size:89 final size:89
Alignment explanation
Indices: 99249908--99250206 Score: 247
Period size: 89 Copynumber: 3.3 Consensus size: 89
99249898 TTCGACAGAT
* * *
99249908 CTTATCTTCGCTGAGCAGGAGTGGAGCAGATTAAATTTTGGCAAATCTTACCTCCATGTATCGGC
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGC-AATCTTATCTCCATGTATCGGC
* * * *
99249973 AATGGAGCAGATTTCAGCTACCAGC
65 TATGGAGCAGATTTCAGCCACAAAC
* * * *
99249998 CTTATCTTCACTGAGCAGGAGTGAAGCAG-GCTAAA-TATAGCAGATC-TAT-TCCCA--T-T-G
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATC-AAATTTTGGCA-ATCTTATCT-CCATGTATCG
* *** * * * *
99250055 GCTGGAGTGGAACAGATCAAATTTCGACAGAT
63 GCT--A-TGGAGCAGATTTCA--GCCACAAAC
*
99250087 CTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAATTTTGGCGAATCTTATCTCCATGTATCGGC
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGC-AATCTTATCTCCATGTATCGGC
99250152 TATGGAGCAGATTTCAGCCACAAAC
65 TATGGAGCAGATTTCAGCCACAAAC
* *
99250177 CTTATC-CCACTGAGCAGGAGTGGAACAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGAT
99250207 TACAAATAGC
Statistics
Matches: 158, Mismatches: 34, Indels: 35
0.70 0.15 0.15
Matches are distributed among these distances:
84 3 0.02
85 1 0.01
86 2 0.01
87 11 0.07
88 6 0.04
89 61 0.39
90 49 0.31
91 7 0.04
92 11 0.07
93 2 0.01
94 1 0.01
95 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (89 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGGCAATCTTATCTCCATGTATCGGCT
ATGGAGCAGATTTCAGCCACAAAC
Found at i:99250267 original size:132 final size:130
Alignment explanation
Indices: 99250101--99250608 Score: 544
Period size: 132 Copynumber: 3.8 Consensus size: 130
99250091 TCTTCGCTGA
* *** *
99250101 GCAGGAGTGGAGCAGATCAAATTTTGGCGAATCTTATCTCCATGTATCGGCTATGGAGCAGATTT
1 GCAGGAGTGGAACAGATCAAATTTCAACGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
** **
99250166 CAGCCACAAACCTTATCCCACTGAGCAGGAGTGGAACAGATTACAAATAGCAGATCTCATCCCAC
66 CAGCCAC-AGTCTTATCCCACTGAGCAGGAGTGGAACAGGCTA-AAATAGCAGATCTCATCCCAC
99250231 TG
129 TG
* *
99250233 GCAGGAGTGGAACAGATCAAATTTCAACGGATCTTGTCTCCATGTATCGGCAATGGAGCAGATTT
1 GCAGGAGTGGAACAGATCAAATTTCAACGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
* * * * *
99250298 CAGCCACCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACT--CTAGATCTTATCTTC
66 CAGCCA-CAGTCTTATC-CCACTGAGCAGGAGTGGAACAGGCTAAAATAGC-AGATCTCATC-CC
*
99250361 GCTG
127 ACTG
* * * *
99250365 AGCAGGAGTGGAGCAGATCAAAATTT-GACGAATCTTATCTCTATGTATTGGCAATGGAGCAGA-
1 -GCAGGAGTGGAACAGATC-AAATTTCAACGAATCTTATCTCCATGTATCGGCAATGGAGCAGAT
* * *
99250428 TTCAAACCATCAGTGTTATCCCACTGAACAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCC
64 TTC-AGCCA-CAGTCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAA-ATAGCAGATCTCATCC
99250493 CACTG
126 CACTG
* * *
99250498 GCAGGAGTGGAACAGATCAAATTTCAGCCG-ATCTTATCTCCATGTATTGGCAATGGAACAGA-T
1 GCAGGAGTGGAACAGATCAAATTTCA-ACGAATCTTATCTCCATGTATCGGCAATGGAGCAGATT
* * * * *
99250561 TCAAACCACCAGTCTTAACCCCCTAAGCAGTAG-GGTAACAGGCTAAAA
65 TC-AGCCA-CAGTCTTATCCCACTGAGCAGGAGTGG-AACAGGCTAAAA
99250609 ACTACAGATC
Statistics
Matches: 318, Mismatches: 45, Indels: 27
0.82 0.12 0.07
Matches are distributed among these distances:
130 1 0.00
131 18 0.06
132 191 0.60
133 92 0.29
134 15 0.05
135 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (130 bp):
GCAGGAGTGGAACAGATCAAATTTCAACGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
CAGCCACAGTCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAAATAGCAGATCTCATCCCACTG
Found at i:99250424 original size:265 final size:265
Alignment explanation
Indices: 99250083--99250577 Score: 764
Period size: 265 Copynumber: 1.9 Consensus size: 265
99250073 AAATTTCGAC
* *
99250083 AGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAATTTTGGCGAATCTTATCTCCATGTAT
1 AGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAAATTTGACGAATCTTATCTCCATGTAT
* * * *
99250148 CGGCTATGGAGCAGATTTC-AGCCA-CAAACCTTATCCCACTGAGCAGGAGTGGAACAGATTACA
66 CGGCAATGGAGCAGA-TTCAAACCATC-AACCTTATCCCACTGAACAGGAGTGGAACAGACTA-A
* *
99250211 A-ATAGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAACGGATCTTGTCTCCA
128 ATATAGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAACCGATCTTATCTCCA
* *
99250275 TGTATCGGCAATGGAGCAGATTTC-AGCCACCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGG
193 TGTATCGGCAATGGAACAGA-TTCAAACCACCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGG
99250339 CTAAACTCT
257 CTAAACTCT
*
99250348 AGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAAATTTGACGAATCTTATCTCTATGTAT
1 AGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAAATTTGACGAATCTTATCTCCATGTAT
* *** *
99250413 TGGCAATGGAGCAGATTCAAACCATCAGTGTTATCCCACTGAACAGGAGTGGAACAGGCTAAATA
66 CGGCAATGGAGCAGATTCAAACCATCAACCTTATCCCACTGAACAGGAGTGGAACAGACTAAATA
*
99250478 TAGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAGCCGATCTTATCTCCATGT
131 TAGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAACCGATCTTATCTCCATGT
*
99250543 ATTGGCAATGGAACAGATTCAAACCACCAGTCTTA
196 ATCGGCAATGGAACAGATTCAAACCACCAGTCTTA
99250578 ACCCCCTAAG
Statistics
Matches: 208, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
264 8 0.04
265 199 0.96
266 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (265 bp):
AGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAAATTTGACGAATCTTATCTCCATGTAT
CGGCAATGGAGCAGATTCAAACCATCAACCTTATCCCACTGAACAGGAGTGGAACAGACTAAATA
TAGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAACCGATCTTATCTCCATGT
ATCGGCAATGGAACAGATTCAAACCACCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAA
ACTCT
Found at i:99250560 original size:311 final size:305
Alignment explanation
Indices: 99249820--99250541 Score: 670
Period size: 311 Copynumber: 2.3 Consensus size: 305
99249810 TTCGGCAAGC
*
99249820 CTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAGGAGTG
1 CTTATCCCACTGAACAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAGGAGTG
* * * **
99249885 GAATAGATCAAATTTC-GACAGATCTTATCTTCGC-TGAGCAGGAGTGGAGCAGATTAAATTTTG
66 GAACAGATCAAATTTCAG-CAGATCTTATC-TC-CAT--G-AGGAGTGGAACAGATCAAATTTCA
* *
99249948 GCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCTACCAGCCTTATCTTCACTGAG
125 ACAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAG
*
99250013 CAGGAGTGAAGCAGGCTAAATATAGCAGATCTATTCCCATTGGCTGGAGTGGAACAGATCAAATT
190 CAGGAGTGAAGCAGGCTAAATATA--AGATCTATTCCCA-TGGCAGGAGTGGAACAGATCAAATT
* * ***
99250078 TCGACAGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAATTTTGGCGAAT
252 TCGACAGATCTTATCTTCGATGAGCAGGAATGGAGCAGATCAAACCAT-GCGAAT
* * ** ** *** * * *
99250133 CTTATCTCCA-TGTATC-GGCTA-TGGAGCAGATTTCAGCCA-CAAACCTTATCCCACTGAGCAG
1 CTTATC-CCACTG-AACAGG--AGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTG-GCAG
*
99250194 GAGTGGAACAGATTACAAA--T-AGCAGATCTCATC-CCACTGGCAGGAGTGGAACAGATCAAAT
61 GAGTGGAACAGA-T-CAAATTTCAGCAGATCTTATCTCCA-T-G-AGGAGTGGAACAGATCAAAT
** ** *
99250255 TTCAACGGATCTTGTCTCCATGTATCGGCAATGGAGCAGATTTCAGCCACCAGTCTTATCTTCAC
121 TTCAACAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCAC
* * * *
99250320 TGAGCAGGAGTGGAGCAGGCTAAACTCT-AGATCTTATCTTCGC-TGAGCAGGAGTGGAGCAGAT
186 TGAGCAGGAGTGAAGCAGGCTAAA-TATAAGATC-TA--TTCCCATG-GCAGGAGTGGAACAGAT
* ** *
99250383 CAAAATTT-GAC-GAATCTTATC-TCTATGTA-TTGGCAATGGAGCAGATTCAAACCAT-C-AGT
246 C-AAATTTCGACAG-ATCTTATCTTCGATG-AGCAGG-AATGGAGCAGA-TCAAACCATGCGAAT
*
99250442 GTTATCCCACTGAACAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAGGAGTG
1 CTTATCCCACTGAACAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAGGAGTG
*
99250507 GAACAGATCAAATTTCAGCCGATCTTATCTCCATG
66 GAACAGATCAAATTTCAGCAGATCTTATCTCCATG
99250542 TATTGGCAAT
Statistics
Matches: 326, Mismatches: 55, Indels: 61
0.74 0.12 0.14
Matches are distributed among these distances:
306 4 0.01
307 2 0.01
308 33 0.10
309 42 0.13
310 16 0.05
311 138 0.42
312 19 0.06
313 34 0.10
314 32 0.10
315 2 0.01
316 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (305 bp):
CTTATCCCACTGAACAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAGGAGTG
GAACAGATCAAATTTCAGCAGATCTTATCTCCATGAGGAGTGGAACAGATCAAATTTCAACAAAT
CTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAG
TGAAGCAGGCTAAATATAAGATCTATTCCCATGGCAGGAGTGGAACAGATCAAATTTCGACAGAT
CTTATCTTCGATGAGCAGGAATGGAGCAGATCAAACCATGCGAAT
Found at i:99250642 original size:265 final size:265
Alignment explanation
Indices: 99250083--99250648 Score: 736
Period size: 265 Copynumber: 2.1 Consensus size: 265
99250073 AAATTTCGAC
* * *
99250083 AGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAATTTTGGCGAATCTTATCTCCATGTAT
1 AGATCTTATCTTCGCTAAGCAGGAGTGGAGCAGATCAAAATTTGACGAATCTTATCTCCATGTAT
* * * *
99250148 CGGCTATGGAGCAGATTTCAGCCACAAACCTTATCCCACTGAGCAGGAGTGGAACAGATTACAAA
66 CGGCAATGGAGCAGATTTCAACCACAAACCTTATCCCACTGAACAGGAGTGGAACAGACTACAAA
* *
99250213 TAGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAACGGATCTTGTCTCCATGT
131 TAGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAACCGATCTTATCTCCATGT
* * * * * *
99250278 ATCGGCAATGGAGCAGATTTCAGCCACCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAA
196 ATCGGCAATGGAACAGATTTCAACCACCAGTCTTAACTCCACTAAGCAGGAGTGGAACAGGCTAA
99250343 ACTCT
261 ACTCT
* *
99250348 AGATCTTATCTTCGCTGAGCAGGAGTGGAGCAGATCAAAATTTGACGAATCTTATCTCTATGTAT
1 AGATCTTATCTTCGCTAAGCAGGAGTGGAGCAGATCAAAATTTGACGAATCTTATCTCCATGTAT
* *** *
99250413 TGGCAATGGAGCAGA-TTCAAACCATC-AGTGTTATCCCACTGAACAGGAGTGGAACAGGCTA-A
66 CGGCAATGGAGCAGATTTC-AACCA-CAAACCTTATCCCACTGAACAGGAGTGGAACAGACTACA
*
99250475 ATATAGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAGCCGATCTTATCTCCA
129 A-ATAGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAACCGATCTTATCTCCA
* * *
99250540 TGTATTGGCAATGGAACAGA-TTCAAACCACCAGTCTTAAC-CCCCTAAGCAGTAG-GGTAACAG
193 TGTATCGGCAATGGAACAGATTTC-AACCACCAGTCTTAACTCCACTAAGCAGGAGTGG-AACAG
99250602 GCTAAAAACTAC-
256 GCT--AAACT-CT
* *
99250614 AGATCTTGTC-TC-CTTAAGCAGTAGTGGAGCAGATC
1 AGATCTTATCTTCGC-TAAGCAGGAGTGGAGCAGATC
99250649 GAAGACAGTG
Statistics
Matches: 265, Mismatches: 27, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
263 2 0.01
264 26 0.10
265 221 0.83
266 15 0.06
267 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (265 bp):
AGATCTTATCTTCGCTAAGCAGGAGTGGAGCAGATCAAAATTTGACGAATCTTATCTCCATGTAT
CGGCAATGGAGCAGATTTCAACCACAAACCTTATCCCACTGAACAGGAGTGGAACAGACTACAAA
TAGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAACCGATCTTATCTCCATGT
ATCGGCAATGGAACAGATTTCAACCACCAGTCTTAACTCCACTAAGCAGGAGTGGAACAGGCTAA
ACTCT
Found at i:99251003 original size:29 final size:29
Alignment explanation
Indices: 99250969--99251025 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
99250959 TAAACATCCC
99250969 ACTAAACCAACCACTAACTCCATCACCCT
1 ACTAAACCAACCACTAACTCCATCACCCT
* * *
99250998 ACTAAACCATCCACTACCTTCATCACCC
1 ACTAAACCAACCACTAACTCCATCACCC
99251026 CCACACCCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.35, C:0.46, G:0.00, T:0.19
Consensus pattern (29 bp):
ACTAAACCAACCACTAACTCCATCACCCT
Found at i:99251039 original size:37 final size:37
Alignment explanation
Indices: 99250992--99251066 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
99250982 CTAACTCCAT
*
99250992 CACCCTACTAAACCATCCACTACCTTCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
99251029 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
99251066 C
1 C
99251067 TAACTCCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.29, C:0.53, G:0.00, T:0.17
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:99251068 original size:18 final size:18
Alignment explanation
Indices: 99251045--99251080 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
99251035 ACTAAACCAT
*
99251045 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
99251063 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
99251081 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:99251492 original size:19 final size:18
Alignment explanation
Indices: 99251468--99251504 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
99251458 TTATGTTTCA
99251468 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
99251487 TATTATTATATATTTATT
1 TATTATTATATATTTATT
99251505 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:99251493 original size:63 final size:63
Alignment explanation
Indices: 99251353--99251495 Score: 159
Period size: 63 Copynumber: 2.3 Consensus size: 63
99251343 TTTAACCCCT
* * *
99251353 TTTTTATTTTTGTTATTTTACTGTTAAATTAATCAATTTGAGCTTTATTCTCATTATTTTTATA
1 TTTTTATTTTTATTATTTTACTATTAAATTAATCAATTTGAGC-TTATTCTCATTATTATTATA
* * *
99251417 TTTGTT-TTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA
1 TTT-TTATTTTTATTATTTTACTATTAAATTAATCAATTTGAGCTTAT-TCTCATTATTATTATA
99251478 TTATTTATTTATTATTAT
1 TT-TTTATTT-TTATTAT
99251496 ATATTTATTA
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
61 17 0.25
62 8 0.12
63 26 0.38
64 15 0.22
65 2 0.03
ACGTcount: A:0.26, C:0.05, G:0.06, T:0.64
Consensus pattern (63 bp):
TTTTTATTTTTATTATTTTACTATTAAATTAATCAATTTGAGCTTATTCTCATTATTATTATA
Found at i:99251516 original size:17 final size:14
Alignment explanation
Indices: 99251476--99251506 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
99251466 CATATTATTA
*
99251476 TATTATTTATTTAT
1 TATTATATATTTAT
99251490 TATTATATATTTAT
1 TATTATATATTTAT
99251504 TAT
1 TAT
99251507 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:99251733 original size:21 final size:21
Alignment explanation
Indices: 99251700--99251750 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
99251690 TATTATCCCC
** *
99251700 CATATTTAATGTTATCGTCAA
1 CATATTTTTTGTTATCATCAA
* *
99251721 CATATTTTTTGTTATTATCAT
1 CATATTTTTTGTTATCATCAA
99251742 CATATTTTT
1 CATATTTTT
99251751 AATATTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (21 bp):
CATATTTTTTGTTATCATCAA
Found at i:99252189 original size:126 final size:126
Alignment explanation
Indices: 99251964--99252207 Score: 436
Period size: 126 Copynumber: 1.9 Consensus size: 126
99251954 CATTGATCTT
*
99251964 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATTGTGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATTGTGCCCTA
*
99252029 ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAAAATTCGAATATCCTCTTACCAGTTCA
99252090 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAG-ATTCGTGCCCT
1 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATT-GTGCCCT
* *
99252154 AACGTACTGGGTTTCGCTTTCTTTGTTTGTTTTGAAAATTCGAATATCCTCTTA
65 AACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAAAATTCGAATATCCTCTTA
99252208 AGGCTAAAAC
Statistics
Matches: 113, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
125 3 0.03
126 110 0.97
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (126 bp):
CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATTGTGCCCTA
ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAAAATTCGAATATCCTCTTACCAGTTCA
Found at i:99254074 original size:19 final size:19
Alignment explanation
Indices: 99254049--99254172 Score: 170
Period size: 19 Copynumber: 6.8 Consensus size: 19
99254039 ATAATCTTCA
99254049 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
99254068 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
99254087 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
99254104 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
99254122 AT-A-ATACAATCCTAGAT
1 ATGATATGCAATCTTAGAT
99254139 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
99254157 ATGATATACAATCTTA
1 ATGATATGCAATCTTA
99254173 AAAGATATGA
Statistics
Matches: 92, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
17 30 0.33
18 30 0.33
19 32 0.35
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:99254089 original size:14 final size:15
Alignment explanation
Indices: 99254070--99254160 Score: 67
Period size: 18 Copynumber: 5.5 Consensus size: 15
99254060 TCTTAGATGT
99254070 GATATG-CAATCTTA
1 GATATGACAATCTTA
99254084 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
99254101 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
* *
99254119 GATATAATACAATCCTA
1 GATAT--GACAATCTTA
99254136 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
99254154 GATATGA
1 GATATGA
99254161 TATACAATCT
Statistics
Matches: 62, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
14 6 0.10
15 2 0.03
17 26 0.42
18 27 0.44
20 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:99254119 original size:35 final size:35
Alignment explanation
Indices: 99254057--99254172 Score: 178
Period size: 35 Copynumber: 3.2 Consensus size: 35
99254047 CAATGATATG
*
99254057 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
*
99254093 CAATCTTAGATATGATTGCAATCTTAGATATAATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
99254128 CAATCCTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
99254165 CAATCTTA
1 CAATCTTA
99254173 AAAGATATGA
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
35 48 0.66
36 15 0.21
37 10 0.14
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:99254512 original size:24 final size:25
Alignment explanation
Indices: 99254466--99254512 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
99254456 TATCTCCTTG
*
99254466 ATTTTTTAATTCACTTTTATATTTT
1 ATTTTTTAATTCAATTTTATATTTT
99254491 ATTTTTTAA-T-AATTTTAGTATT
1 ATTTTTTAATTCAATTTTA-TATT
99254513 ATATCAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 5 0.25
25 9 0.45
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (25 bp):
ATTTTTTAATTCAATTTTATATTTT
Found at i:99256755 original size:14 final size:16
Alignment explanation
Indices: 99256736--99256772 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
99256726 TTGATATCCT
99256736 TTTGCAT-TCAT-GCA
1 TTTGCATCTCATAGCA
99256750 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
99256766 TTT-CATC
1 TTTGCATC
99256773 ATATCATATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:99256841 original size:12 final size:12
Alignment explanation
Indices: 99256824--99256868 Score: 72
Period size: 12 Copynumber: 3.7 Consensus size: 12
99256814 TAAAGTTATT
*
99256824 AAAAAGAGAAAG
1 AAAAAGAGAGAG
99256836 AAAAAGAGAGAG
1 AAAAAGAGAGAG
99256848 AAAAAGAGAGAG
1 AAAAAGAGAGAG
99256860 AAAGAAGAG
1 AAA-AAGAG
99256869 GGTCACCGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 26 0.84
13 5 0.16
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAGAG
Found at i:99259419 original size:8 final size:8
Alignment explanation
Indices: 99259398--99259474 Score: 63
Period size: 8 Copynumber: 10.0 Consensus size: 8
99259388 TCTATTTCAA
99259398 AAAAAAAG
1 AAAAAAAG
**
99259406 GCAAAAA-
1 AAAAAAAG
*
99259413 AATAAAAG
1 AAAAAAAG
*
99259421 AAAAAGAG
1 AAAAAAAG
99259429 -AAAAAA-
1 AAAAAAAG
*
99259435 ATAAAAAG
1 AAAAAAAG
*
99259443 AAAAAAGTG
1 AAAAAA-AG
99259452 AAAAAAAG
1 AAAAAAAG
99259460 -AAAAAAG
1 AAAAAAAG
99259467 AAAAAAAG
1 AAAAAAAG
99259475 GAGAGGCCAA
Statistics
Matches: 52, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
7 21 0.40
8 24 0.46
9 7 0.13
ACGTcount: A:0.81, C:0.01, G:0.14, T:0.04
Consensus pattern (8 bp):
AAAAAAAG
Found at i:99259426 original size:21 final size:21
Alignment explanation
Indices: 99259396--99259463 Score: 77
Period size: 21 Copynumber: 3.2 Consensus size: 21
99259386 CTTCTATTTC
99259396 AAAA-AAAAAG-GCAAAAAAAT
1 AAAAGAAAAAGAG-AAAAAAAT
99259416 AAAAGAAAAAGAGAAAAAAAT
1 AAAAGAAAAAGAGAAAAAAAT
* *
99259437 AAAAAGAAAAAAGTGAAAAAAAG
1 -AAAAG-AAAAAGAGAAAAAAAT
99259460 AAAA
1 AAAA
99259464 AAGAAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
20 4 0.10
21 14 0.33
22 10 0.24
23 14 0.33
ACGTcount: A:0.81, C:0.01, G:0.13, T:0.04
Consensus pattern (21 bp):
AAAAGAAAAAGAGAAAAAAAT
Found at i:99259434 original size:23 final size:22
Alignment explanation
Indices: 99259421--99259471 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
99259411 AAAATAAAAG
*
99259421 AAAAAGAGAAAAAAATAAAAAG
1 AAAAAGAGAAAAAAAAAAAAAG
*
99259443 AAAAAAGTGAAAAAAAGAAAAAAG
1 -AAAAAGAGAAAAAAA-AAAAAAG
99259467 AAAAA
1 AAAAA
99259472 AAGGAGAGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (22 bp):
AAAAAGAGAAAAAAAAAAAAAG
Found at i:99259457 original size:17 final size:15
Alignment explanation
Indices: 99259416--99259474 Score: 75
Period size: 15 Copynumber: 3.9 Consensus size: 15
99259406 GCAAAAAAAT
*
99259416 AAAAGAAAAAGAGAA
1 AAAAGAAAAAAAGAA
*
99259431 AAAA-ATAAAAAGAA
1 AAAAGAAAAAAAGAA
99259445 AAAAGTGAAAAAAAGAA
1 AAAA--GAAAAAAAGAA
99259462 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
99259475 GAGAGGCCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
14 12 0.32
15 13 0.34
17 13 0.34
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.03
Consensus pattern (15 bp):
AAAAGAAAAAAAGAA
Found at i:99260655 original size:87 final size:83
Alignment explanation
Indices: 99260421--99260790 Score: 446
Period size: 87 Copynumber: 4.4 Consensus size: 83
99260411 CAAAATTCAG
* *
99260421 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-TAAAATTACAGATCTTATCTCCCTAAGCAGTA
*
99260486 GTGGAGCAGATCGAAGACT
65 GCGGAGCAGATCGAAGACT
* *
99260505 CGCCTTAATCCCCTAAGCAATAGGGTAACAGGT----TCACAGATCTTATCTCCCTAAGCAGTAG
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTAAAATTACAGATCTTATCTCCCTAAGCAGTAG
*
99260566 CGGAGCAAATCGACGACGACT
66 CGGAGCAGATCGA--A-GACT
* * *
99260587 CGCCTTAACCCCCTAAGCAGTAGGGTAGCAAGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAAC-AGGTAAAATTACAGATCTTATCTCCCTAAGCAGTA
**
99260652 GCGGAATAGATC-AACGACAACT
65 GCGGAGCAGATCGAA-G---ACT
* *
99260674 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGCGGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGT-AAAATTACAGATCTTATCTCCCTAAGCAGTA
* *
99260739 GTGGAGTAGATCGAAGA-T
65 GCGGAGCAGATCGAAGACT
* *
99260757 GCGCCTTAACCCCCTAAGTAGTAGGGTAACAGGT
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGT
99260791 TAAAGTATAA
Statistics
Matches: 250, Mismatches: 22, Indels: 28
0.83 0.07 0.09
Matches are distributed among these distances:
79 37 0.15
81 1 0.00
82 30 0.12
83 5 0.02
84 66 0.26
86 4 0.02
87 105 0.42
88 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (83 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTAAAATTACAGATCTTATCTCCCTAAGCAGTAG
CGGAGCAGATCGAAGACT
Found at i:99261132 original size:120 final size:121
Alignment explanation
Indices: 99260801--99261110 Score: 308
Period size: 131 Copynumber: 2.5 Consensus size: 121
99260791 TAAAGTATAA
* * * * *
99260801 CAGATCTGGCCTTCAGGTG-TTCATGCTGAAGCAGATCCAAGGTGATTTGGCGT-TTCTGTATTG
1 CAGATCTGGCCTTCACGTGCTT-ATGATGAAGCAAATCCAAGATGATTTGGCATCTT-TGTATTG
*
99260864 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACA
64 ACAGAGAACAAATC-----AA-AG-TTTGGCATCTCCATATTCGACGGAGAGCAGATC--A-ACA
99260929 TAG
119 TAG
* * * * *
99260932 CTGATTTGGCTTTCACGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTC
1 CAGATCTGGCCTTCACGTGCTTATGATGAAGCAAATCCAAGATGATTTGGCATCTTTGTATTGAC
*
99260997 AGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAGA-C-ACATAG
66 AGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGAGCAGATCAACATAG
* * *
99261051 CAGATCTGGCCTTCA-GATGTTTAT-ACTGAAGTAAGATCCAAGATGGTTTGGCATCTTTGT
1 CAGATCTGGCCTTCACG-TGCTTATGA-TGAAGCAA-ATCCAAGATGATTTGGCATCTTTGT
99261111 GCTTACAAGG
Statistics
Matches: 157, Mismatches: 17, Indels: 21
0.81 0.09 0.11
Matches are distributed among these distances:
118 2 0.01
119 31 0.20
120 23 0.15
123 1 0.01
124 30 0.19
125 2 0.01
126 2 0.01
131 62 0.39
132 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (121 bp):
CAGATCTGGCCTTCACGTGCTTATGATGAAGCAAATCCAAGATGATTTGGCATCTTTGTATTGAC
AGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGAGCAGATCAACATAG
Found at i:99261278 original size:207 final size:207
Alignment explanation
Indices: 99260913--99261834 Score: 1472
Period size: 207 Copynumber: 4.5 Consensus size: 207
99260903 ATTCGACGGA
* * * *
99260913 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTATGA-TGAAGCAAATCTAAGATGA
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTA-CATTGAAGCAAGTCTAAGATGA
*
99260977 TTTGGCATCTTTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCA
65 TTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCA
* *
99261042 GACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGTAAGATCCAAGATGGTTTGGCATCT
130 GACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCC
99261107 TTGTGCTTACAAG
195 TTGTGCTTACAAG
* * * *
99261120 GAGCAAATCAAAGACATAACTGATTTGGCTTTCACATGTTTACGTTGAAGCAAGTCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAGTCTAAGATGAT
* *
99261185 TTGGCATCTCTGTATTGTTAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAG
**
99261250 ACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATGTAAGATGGTTTGGCATCCT
131 ACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCT
99261315 TGTGCTTACAAG
196 TGTGCTTACAAG
*
99261327 GAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAGTCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAGTCTAAGATGAT
* *
99261392 TTGGCATATCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAG
99261457 ACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCT
131 ACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCT
99261522 TGTGCTTACAAG
196 TGTGCTTACAAG
* *
99261534 GAACAAATCGAAGACATAGCTGATTTGGATTTCACGTGTTTACATTGAAGCAAGTCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAGTCTAAGATGAT
* * * * **
99261599 TTGGCATCTCTGTATTTTCAGAGAACAAATCGAAGTGTGGCGTCTCCATATTCGACGGAGGATAG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAG
* * ** * * * *
99261664 ACATATAGCAAATCTAACTTTCAGATGATTAGACTGAAGC-AGATCCAAGATGGTTTGGTATCCT
131 ACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCT
99261728 TGTGCTTACAAG
196 TGTGCTTACAAG
* *
99261740 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGTTTAC-TCTGAAGCAAATCTAAGATGA
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACAT-TGAAGCAAGTCTAAGATGA
*
99261804 TTTGGCATCTCTGTATTGTCAGCGAACAAAT
65 TTTGGCATCTCTGTATTGTCAGAGAACAAAT
99261835 TGAAAAAGCA
Statistics
Matches: 666, Mismatches: 47, Indels: 5
0.93 0.07 0.01
Matches are distributed among these distances:
205 1 0.00
206 122 0.18
207 543 0.82
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (207 bp):
GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAGTCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAG
ACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCT
TGTGCTTACAAG
Found at i:99262264 original size:19 final size:19
Alignment explanation
Indices: 99262239--99262362 Score: 170
Period size: 19 Copynumber: 6.8 Consensus size: 19
99262229 ATAATCTTCA
99262239 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
99262258 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
99262277 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
99262294 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
99262312 AT-A-ATACAATCCTAGAT
1 ATGATATGCAATCTTAGAT
99262329 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
99262347 ATGATATACAATCTTA
1 ATGATATGCAATCTTA
99262363 AAAGATATGA
Statistics
Matches: 92, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
17 30 0.33
18 30 0.33
19 32 0.35
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:99262279 original size:14 final size:15
Alignment explanation
Indices: 99262260--99262350 Score: 67
Period size: 18 Copynumber: 5.5 Consensus size: 15
99262250 TCTTAGATGT
99262260 GATATG-CAATCTTA
1 GATATGACAATCTTA
99262274 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
99262291 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
* *
99262309 GATATAATACAATCCTA
1 GATAT--GACAATCTTA
99262326 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
99262344 GATATGA
1 GATATGA
99262351 TATACAATCT
Statistics
Matches: 62, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
14 6 0.10
15 2 0.03
17 26 0.42
18 27 0.44
20 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:99262309 original size:35 final size:35
Alignment explanation
Indices: 99262247--99262362 Score: 178
Period size: 35 Copynumber: 3.2 Consensus size: 35
99262237 CAATGATATG
*
99262247 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
*
99262283 CAATCTTAGATATGATTGCAATCTTAGATATAATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
99262318 CAATCCTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
99262355 CAATCTTA
1 CAATCTTA
99262363 AAAGATATGA
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
35 48 0.66
36 15 0.21
37 10 0.14
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:99262702 original size:24 final size:25
Alignment explanation
Indices: 99262656--99262702 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
99262646 TATCTCCTTG
*
99262656 ATTTTTTAATTCACTTTTATATTTT
1 ATTTTTTAATTCAATTTTATATTTT
99262681 ATTTTTTAA-T-AATTTTAGTATT
1 ATTTTTTAATTCAATTTTA-TATT
99262703 ATATCAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 5 0.25
25 9 0.45
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (25 bp):
ATTTTTTAATTCAATTTTATATTTT
Found at i:99264257 original size:5 final size:5
Alignment explanation
Indices: 99264247--99264295 Score: 71
Period size: 5 Copynumber: 9.2 Consensus size: 5
99264237 ACTTTATGTT
99264247 TTATA TTATA TTATA TTATA TTATA TTATA TTATTA TATATA TATATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTA-TA T-TATA T-TATA
99264295 T
1 T
99264296 ATAAACTAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
5 28 0.67
6 12 0.29
7 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TTATA
Found at i:99264283 original size:8 final size:9
Alignment explanation
Indices: 99264199--99264297 Score: 70
Period size: 8 Copynumber: 11.6 Consensus size: 9
99264189 TTATGTTTAG
99264199 TATATTAT-
1 TATATTATA
99264207 TATATTAT-
1 TATATTATA
99264215 TATATTAT-
1 TATATTATA
*
99264223 TATATAATA
1 TATATTATA
* * *
99264232 AAGA-TACTT
1 TATATTA-TA
*
99264241 TATGTT-T-
1 TATATTATA
99264248 TATATTATA
1 TATATTATA
99264257 TTATATTATA
1 -TATATTATA
99264267 TTATATTATA
1 -TATATTATA
99264277 T-TATTATA
1 TATATTATA
99264285 TATA-TATA
1 TATATTATA
99264293 TATAT
1 TATAT
99264298 AAACTAAAGA
Statistics
Matches: 74, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
7 5 0.07
8 42 0.57
9 7 0.09
10 20 0.27
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (9 bp):
TATATTATA
Found at i:99265594 original size:15 final size:15
Alignment explanation
Indices: 99265574--99265630 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
99265564 CGATGAATTT
99265574 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
99265589 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
99265604 ATTGAATTTATATTG
1 ATTGAATTTATATTG
99265619 ATTGAA-TTATAT
1 ATTGAATTTATAT
99265631 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:99269880 original size:31 final size:31
Alignment explanation
Indices: 99269842--99269904 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
99269832 ATACGTTCGG
99269842 TAATGCCTCGTAACCTTGTTTCGGCGACTGT
1 TAATGCCTCGTAACCTTGTTTCGGCGACTGT
*
99269873 TAATGCCTCGTAACCTTGTTTCGGTGACTGT
1 TAATGCCTCGTAACCTTGTTTCGGCGACTGT
99269904 T
1 T
99269905 TGGGGTTAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (31 bp):
TAATGCCTCGTAACCTTGTTTCGGCGACTGT
Found at i:99270895 original size:17 final size:17
Alignment explanation
Indices: 99270873--99270905 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
99270863 TAAAATTGCA
99270873 ATCATATCTAAGATTGT
1 ATCATATCTAAGATTGT
99270890 ATCATATCTAAGATTG
1 ATCATATCTAAGATTG
99270906 CATATCATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (17 bp):
ATCATATCTAAGATTGT
Found at i:99270911 original size:14 final size:15
Alignment explanation
Indices: 99270874--99270911 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
99270864 AAAATTGCAA
99270874 TCATATCTAAGATTG
1 TCATATCTAAGATTG
99270889 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
99270906 -CATATC
1 TCATATC
99270912 ATTAAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:99271065 original size:21 final size:20
Alignment explanation
Indices: 99271027--99271066 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
99271017 TTGGGCTTCG
**
99271027 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
99271047 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
99271067 TCTGGGCCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:99274303 original size:26 final size:24
Alignment explanation
Indices: 99274263--99274340 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 24
99274253 TTATTTTATT
* * **
99274263 AAATAAAAAAATTTAAAATTATAA
1 AAATAAATATATTTAAAAACATAA
99274287 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
* *
99274313 AAAT-AA-ATATTAAAAAAAATAA
1 AAATAAATATATTTAAAAACATAA
99274335 AAATAA
1 AAATAA
99274341 TACTAAAACA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
22 18 0.40
23 3 0.07
25 8 0.18
26 16 0.36
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.27
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:99274328 original size:22 final size:21
Alignment explanation
Indices: 99274293--99274348 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
99274283 ATAATAAATC
* *
99274293 AAAT-ATATTTAAAAACATAA
1 AAATAATATTAAAAAAAATAA
99274313 AAATAAATATTAAAAAAAATAA
1 AAAT-AATATTAAAAAAAATAA
*
99274335 AAATAATACTAAAA
1 AAATAATATTAAAA
99274349 CAATTCTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.13
21 9 0.29
22 18 0.58
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (21 bp):
AAATAATATTAAAAAAAATAA
Found at i:99274442 original size:20 final size:20
Alignment explanation
Indices: 99274395--99274442 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
99274385 AAAAAATAGT
99274395 TATATTAAAAATTTAAAATAA
1 TATATTAAAAA-TTAAAATAA
*
99274416 T-TTTTAAAAA-TAAAATATA
1 TATATTAAAAATTAAAATA-A
99274435 TATATTAA
1 TATATTAA
99274443 TATATAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 7 0.30
19 2 0.09
20 13 0.57
21 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TATATTAAAAATTAAAATAA
Found at i:99286245 original size:15 final size:15
Alignment explanation
Indices: 99286225--99286253 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
99286215 AATATAATTA
99286225 TTTTATATTTTTTGT
1 TTTTATATTTTTTGT
99286240 TTTTATATTTTTTG
1 TTTTATATTTTTTG
99286254 AATCCAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (15 bp):
TTTTATATTTTTTGT
Found at i:99286692 original size:14 final size:15
Alignment explanation
Indices: 99286673--99286701 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
99286663 ATTTTACGAA
99286673 ATAAAAAA-ATAATT
1 ATAAAAAAGATAATT
99286687 ATAAAAAAGATAATT
1 ATAAAAAAGATAATT
99286702 TCAATAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
ATAAAAAAGATAATT
Found at i:99287767 original size:26 final size:26
Alignment explanation
Indices: 99287705--99287767 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
99287695 TCAAGAAATT
99287705 ATAAAATATTATTTTATTTTACTTTTA
1 ATAAAATATTATTTTATTTTAC-TTTA
* *
99287732 AAAAAATATTTTTTTATTTTTA-TTTA
1 ATAAAATATTATTTTA-TTTTACTTTA
*
99287758 ATAAACTATT
1 ATAAAATATT
99287768 CTGATCAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 12 0.39
27 14 0.45
28 5 0.16
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (26 bp):
ATAAAATATTATTTTATTTTACTTTA
Found at i:99289842 original size:22 final size:22
Alignment explanation
Indices: 99289803--99289844 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
99289793 ATTTTTTCAC
* **
99289803 TGTTGTTTTGTTGTCATTTTAA
1 TGTTGTTTTGCTACCATTTTAA
99289825 TGTTGTTTTGCTACCATTTT
1 TGTTGTTTTGCTACCATTTT
99289845 GCTATTATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.12, C:0.10, G:0.17, T:0.62
Consensus pattern (22 bp):
TGTTGTTTTGCTACCATTTTAA
Found at i:99290302 original size:26 final size:27
Alignment explanation
Indices: 99290245--99290302 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
99290235 AAATTTTAAC
* *
99290245 ATATTATTTTGTTTTACTTTTAAAAAA
1 ATATTATTTTATTTTACATTTAAAAAA
*
99290272 ATATTATTTTATTTT-CATTTAATAAA
1 ATATTATTTTATTTTACATTTAAAAAA
*
99290298 CTATT
1 ATATT
99290303 CTCATCAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (27 bp):
ATATTATTTTATTTTACATTTAAAAAA
Found at i:99291018 original size:36 final size:37
Alignment explanation
Indices: 99290952--99291024 Score: 130
Period size: 36 Copynumber: 2.0 Consensus size: 37
99290942 TATTTAGAGT
99290952 GACTATCAAAATAATTTACCAAAAAAAAAAACTATGA
1 GACTATCAAAATAATTTACCAAAAAAAAAAACTATGA
*
99290989 GACTATCAAGATAATTTA-CAAAAAAAAAAACTATGA
1 GACTATCAAAATAATTTACCAAAAAAAAAAACTATGA
99291025 TATTAAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 18 0.51
37 17 0.49
ACGTcount: A:0.59, C:0.12, G:0.07, T:0.22
Consensus pattern (37 bp):
GACTATCAAAATAATTTACCAAAAAAAAAAACTATGA
Found at i:99292071 original size:24 final size:25
Alignment explanation
Indices: 99292015--99292087 Score: 112
Period size: 24 Copynumber: 3.0 Consensus size: 25
99292005 TGGAACAAAG
* *
99292015 GAAGGTAATTACCGATGATGGTATA
1 GAAGGTGATTACCGATGATGGTAAA
99292040 GAAGGTGATTACCGATGATGG-AAA
1 GAAGGTGATTACCGATGATGGTAAA
*
99292064 GAAGGTGATTACCGGTGATGGTAA
1 GAAGGTGATTACCGATGATGGTAA
99292088 GTGATGTTGA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
24 22 0.50
25 22 0.50
ACGTcount: A:0.34, C:0.08, G:0.33, T:0.25
Consensus pattern (25 bp):
GAAGGTGATTACCGATGATGGTAAA
Found at i:99292093 original size:34 final size:34
Alignment explanation
Indices: 99292055--99292124 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
99292045 TGATTACCGA
99292055 TGATGGAAAGAAGGTGATTACCGGTGATGGTAAG
1 TGATGGAAAGAAGGTGATTACCGGTGATGGTAAG
*** *
99292089 TGATGTTGAGATGGTGATTACCGGTGATGGTAAG
1 TGATGGAAAGAAGGTGATTACCGGTGATGGTAAG
99292123 TG
1 TG
99292125 GTGTTGAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.27, C:0.06, G:0.39, T:0.29
Consensus pattern (34 bp):
TGATGGAAAGAAGGTGATTACCGGTGATGGTAAG
Found at i:99292130 original size:34 final size:34
Alignment explanation
Indices: 99292067--99292133 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
99292057 ATGGAAAGAA
99292067 GGTGATTACCGGTGATGGTAAGTGATGTTGAGAT
1 GGTGATTACCGGTGATGGTAAGTGATGTTGAGAT
*
99292101 GGTGATTACCGGTGATGGTAAGTGGTGTTGAGA
1 GGTGATTACCGGTGATGGTAAGTGATGTTGAGA
99292134 ACAAGCAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.22, C:0.06, G:0.40, T:0.31
Consensus pattern (34 bp):
GGTGATTACCGGTGATGGTAAGTGATGTTGAGAT
Found at i:99298932 original size:21 final size:17
Alignment explanation
Indices: 99298890--99298924 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
99298880 CTTCCATAAG
99298890 TTGTTTCAGCCAAGTAC
1 TTGTTTCAGCCAAGTAC
99298907 TTGTTTCAGCCAAGTAC
1 TTGTTTCAGCCAAGTAC
99298924 T
1 T
99298925 CTCTTGTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (17 bp):
TTGTTTCAGCCAAGTAC
Found at i:99305054 original size:15 final size:16
Alignment explanation
Indices: 99305034--99305063 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
99305024 TCTTGCTGTT
99305034 AGCTGTAAA-ACATGA
1 AGCTGTAAATACATGA
99305049 AGCTGTAAATACATG
1 AGCTGTAAATACATG
99305064 CTCCTTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.23
Consensus pattern (16 bp):
AGCTGTAAATACATGA
Found at i:99315891 original size:17 final size:17
Alignment explanation
Indices: 99315869--99315902 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
99315859 ACTCAATTTT
99315869 CTTAATTAATTTACAAC
1 CTTAATTAATTTACAAC
99315886 CTTAATTAATTTACAAC
1 CTTAATTAATTTACAAC
99315903 TTGTCTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (17 bp):
CTTAATTAATTTACAAC
Found at i:99316457 original size:17 final size:17
Alignment explanation
Indices: 99316437--99316470 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
99316427 AAATAGATTT
99316437 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
99316454 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
99316471 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:99325893 original size:26 final size:26
Alignment explanation
Indices: 99325833--99325893 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
99325823 CAAGAAATTT
99325833 TAAAATATTACTTTATTTTACTTTTAA
1 TAAAATATTACTTTATTTTAC-TTTAA
*
99325860 -AAAATATTATTTTATTTTTA-TTTAA
1 TAAAATATTACTTTA-TTTTACTTTAA
*
99325885 TAAACTATT
1 TAAAATATT
99325894 CTCATCAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (26 bp):
TAAAATATTACTTTATTTTACTTTAA
Found at i:99330279 original size:2 final size:2
Alignment explanation
Indices: 99330274--99330298 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
99330264 GCGCGCACAC
99330274 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
99330299 ACAATTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:99334823 original size:127 final size:127
Alignment explanation
Indices: 99334692--99334998 Score: 492
Period size: 127 Copynumber: 2.4 Consensus size: 127
99334682 AACGAAAAAC
* * *
99334692 CGAAACCCAACACGGTAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGTC-TTGCTTTA
1 CGAAACCCAACACGATAGGGCACGGTTCCTCGAATTTCCAAACATTGAACATTG-CATTACTTTA
* *
99334756 GAATTTATAAAACATGAGTGAAATTCTAAAGGAATGTTCAATTATTTGGAACAAACCGGAAAT
65 GAATTTATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTGGAACAAACCGGAAAT
* *
99334819 CGAAACCCAACACGATAGGGCACGGTT-CTCCGAATTTCCAAATATTGAACATTGCATTATTTTA
1 CGAAACCCAACACGATAGGGCACGGTTCCT-CGAATTTCCAAACATTGAACATTGCATTACTTTA
99334883 GAATTTATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTGGAACAAACCGGAAAT
65 GAATTTATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTGGAACAAACCGGAAAT
* * *
99334946 CGAAACCCAACGCGATAGGGCACGGTTCCCCGAATTTCCAAACATTAAACATT
1 CGAAACCCAACACGATAGGGCACGGTTCCTCGAATTTCCAAACATTGAACATT
99334999 ACCTTCGTTT
Statistics
Matches: 166, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
126 3 0.02
127 162 0.98
128 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (127 bp):
CGAAACCCAACACGATAGGGCACGGTTCCTCGAATTTCCAAACATTGAACATTGCATTACTTTAG
AATTTATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTGGAACAAACCGGAAAT
Found at i:99340556 original size:13 final size:13
Alignment explanation
Indices: 99340538--99340562 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99340528 ATGGGTTGAT
99340538 TTTTTATTTTTTA
1 TTTTTATTTTTTA
99340551 TTTTTATTTTTT
1 TTTTTATTTTTT
99340563 TGCATTAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:99345482 original size:22 final size:20
Alignment explanation
Indices: 99345436--99345482 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 20
99345426 ACAGCCGTAA
99345436 AAAAG-AAAGAAAAATAAGG
1 AAAAGAAAAGAAAAATAAGG
* *
99345455 AGAAGAAAAGAGAGAAATAGGG
1 AAAAGAAAAGA-A-AAATAAGG
99345477 AAAAGA
1 AAAAGA
99345483 CTTGTGTGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 4 0.18
20 5 0.23
21 1 0.05
22 12 0.55
ACGTcount: A:0.68, C:0.00, G:0.28, T:0.04
Consensus pattern (20 bp):
AAAAGAAAAGAAAAATAAGG
Found at i:99354346 original size:7 final size:7
Alignment explanation
Indices: 99354334--99354359 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
99354324 AATATAAGAT
99354334 AAAAATA
1 AAAAATA
99354341 AAAAATA
1 AAAAATA
99354348 AAAAATA
1 AAAAATA
99354355 AAAAA
1 AAAAA
99354360 ACTACTAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:99357239 original size:21 final size:21
Alignment explanation
Indices: 99357213--99357253 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
99357203 TCCAGCAACC
*
99357213 AAACACTCTCATTCCAGCTCT
1 AAACACTCCCATTCCAGCTCT
*
99357234 AAACACTCCCATTCCGGCTC
1 AAACACTCCCATTCCAGCTC
99357254 CTGTCCAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.41, G:0.07, T:0.24
Consensus pattern (21 bp):
AAACACTCCCATTCCAGCTCT
Found at i:99361697 original size:100 final size:100
Alignment explanation
Indices: 99361524--99361723 Score: 391
Period size: 100 Copynumber: 2.0 Consensus size: 100
99361514 AAAAGTATGC
99361524 TCTTTAAGGAACTGGCAATAGATAGAGAATCCAAACTTGAATGTAAAGATAAAACCACAAATTCA
1 TCTTTAAGGAACTGGCAATAGATAGAGAATCCAAACTTGAATGTAAAGATAAAACCACAAATTCA
99361589 AGTAAAATTGATGTGGAATAAAATCTTTCAACATA
66 AGTAAAATTGATGTGGAATAAAATCTTTCAACATA
*
99361624 TCTTTGAGGAACTGGCAATAGATAGAGAATCCAAACTTGAATGTAAAGATAAAACCACAAATTCA
1 TCTTTAAGGAACTGGCAATAGATAGAGAATCCAAACTTGAATGTAAAGATAAAACCACAAATTCA
99361689 AGTAAAATTGATGTGGAATAAAATCTTTCAACATA
66 AGTAAAATTGATGTGGAATAAAATCTTTCAACATA
99361724 AAGATGGCAA
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 99 1.00
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (100 bp):
TCTTTAAGGAACTGGCAATAGATAGAGAATCCAAACTTGAATGTAAAGATAAAACCACAAATTCA
AGTAAAATTGATGTGGAATAAAATCTTTCAACATA
Found at i:99389455 original size:138 final size:138
Alignment explanation
Indices: 99389290--99389706 Score: 762
Period size: 138 Copynumber: 3.0 Consensus size: 138
99389280 TTTTAAAATT
*
99389290 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATCTAAAACGTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACGTAAAAACAAT
99389355 TTAATGCCAATTTTTAAAGAAATTACATATGGTTCTAAAATTCAAAACAGGGACTCCTGAAAGCA
66 TTAATGCCAATTTTTAAAGAAATTACATATGGTTCTAAAATTCAAAACAGGGACTCCTGAAAGCA
99389420 TTCAGACG
131 TTCAGACG
*
99389428 TTAAATCAAATAAGTTGCATAACAACATAACAAAGAGAAATGTTAATATAAAACGTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACGTAAAAACAAT
99389493 TTAATGCCAATTTTTAAAGAAATTACATATGGTTCTAAAATTCAAAACAGGGACTCCTGAAAGCA
66 TTAATGCCAATTTTTAAAGAAATTACATATGGTTCTAAAATTCAAAACAGGGACTCCTGAAAGCA
99389558 TTCAGACG
131 TTCAGACG
* *
99389566 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTATTATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACGTAAAAACAAT
* *
99389631 TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAGGGACTCCTCAAAGCA
66 TTAATGCCAATTTTTAAAGAAATTACATATGGTTCTAAAATTCAAAACAGGGACTCCTGAAAGCA
* *
99389696 TCCATACG
131 TTCAGACG
99389704 TTA
1 TTA
99389707 TTAAGCCTCC
Statistics
Matches: 270, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
138 270 1.00
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.27
Consensus pattern (138 bp):
TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACGTAAAAACAAT
TTAATGCCAATTTTTAAAGAAATTACATATGGTTCTAAAATTCAAAACAGGGACTCCTGAAAGCA
TTCAGACG
Found at i:99393326 original size:14 final size:14
Alignment explanation
Indices: 99393307--99393346 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
99393297 TTGATTGGCA
99393307 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
99393321 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
99393335 GAAAAATGTTTT
1 GTAAAATGTTTT
99393347 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:99393359 original size:34 final size:35
Alignment explanation
Indices: 99393315--99393381 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
99393305 CAGTAAAATG
* *
99393315 TTTTCCGTAAAATGA-TTTCTGAAAAATGTTTTAC
1 TTTTCCGTAAAATGACTTACTGAAAAATATTTTAC
* *
99393349 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGACTTACTGAAAAATATTTT
99393382 CTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 14 0.50
35 14 0.50
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGACTTACTGAAAAATATTTTAC
Found at i:99393368 original size:20 final size:20
Alignment explanation
Indices: 99393330--99393369 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
99393320 CGTAAAATGA
**
99393330 TTTCTGAAAAATGTTTTACT
1 TTTCTGAAAAATGACTTACT
*
99393350 TTTCTGTAAAATGACTTACT
1 TTTCTGAAAAATGACTTACT
99393370 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (20 bp):
TTTCTGAAAAATGACTTACT
Found at i:99400225 original size:31 final size:31
Alignment explanation
Indices: 99400189--99400250 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
99400179 AGATATTCAA
99400189 ATCATCATATTTACTTTTCATCCAAAACTAT
1 ATCATCATATTTACTTTTCATCCAAAACTAT
99400220 ATCATCATATTTACTTTTCATCCAAAACTAT
1 ATCATCATATTTACTTTTCATCCAAAACTAT
99400251 CTAAAATAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (31 bp):
ATCATCATATTTACTTTTCATCCAAAACTAT
Found at i:99403515 original size:90 final size:92
Alignment explanation
Indices: 99403382--99403550 Score: 238
Period size: 90 Copynumber: 1.9 Consensus size: 92
99403372 ATCAGAATAA
* *
99403382 GTATGTTTACGGAAAAATTCACCTAACAACAATTTAACTGAAATTATTAATCATGATAATTATTT
1 GTATGTTTAAGGAAAAATTCACCTAACAACAATTTAACTGAAATTATTAACCATGATAATTATTT
*
99403447 GGACTAATTAAATCATTGCTTAACCGT
66 GGACTAACTAAATCATTGCTTAACCGT
* * *
99403474 GTATGTTTAAGG-AAAATTC-CACT-TCAACACTTTAA-TCGAAATTATTAACCATGGTAATTAT
1 GTATGTTTAAGGAAAAATTCAC-CTAACAACAATTTAACT-GAAATTATTAACCATGATAATTAT
99403535 TTGGACTAACTAAATC
64 TTGGACTAACTAAATC
99403551 TTGGTTTAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
89 1 0.01
90 48 0.70
91 9 0.13
92 11 0.16
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (92 bp):
GTATGTTTAAGGAAAAATTCACCTAACAACAATTTAACTGAAATTATTAACCATGATAATTATTT
GGACTAACTAAATCATTGCTTAACCGT
Found at i:99403862 original size:93 final size:93
Alignment explanation
Indices: 99403674--99403956 Score: 338
Period size: 93 Copynumber: 3.0 Consensus size: 93
99403664 GCAACTAATC
* * * *
99403674 ATATTATAAAAGTAGATGAAAATTTTGTGTCAAATTAAATTATAGGGACTAAATCTCATAT-ATG
1 ATATTATAAAAGTTGATGAAAA-ATTATGTCAAATTAAATTATAGGGACTAAATCTCA-ATCAAG
* * *
99403738 AGTGTAATAAAAGGACCAAAATCACAATTTG
64 -GTATAATAAAAGGACCAAAACCATAATTTG
* **
99403769 ATATTACAAAAGTTGATGAAAAATTATGTCAAATTAAATTATAGGGACT-AATCTCAACTCCCGG
1 ATATTATAAAAGTTGATGAAAAATTATGTCAAATTAAATTATAGGGACTAAATCTCAA-TCAAGG
*
99403833 TATAATAAAAAGACCAAAACCATAATTTG
65 TATAATAAAAGGACCAAAACCATAATTTG
* * * *
99403862 ATATTATAAAAG-TAATAGAAAAATTATGTCAAATTAAATTATAAGGACTGAATCTCAAATCTAG
1 ATATTATAAAAGTTGAT-GAAAAATTATGTCAAATTAAATTATAGGGACTAAATCTC-AATCAAG
* *
99403926 ATATAATAAAAGGACCAAAACCATAAATTG
64 GTATAATAAAAGGACCAAAACCATAATTTG
99403956 A
1 A
99403957 CATCATATTT
Statistics
Matches: 165, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
92 4 0.02
93 76 0.46
94 63 0.38
95 22 0.13
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (93 bp):
ATATTATAAAAGTTGATGAAAAATTATGTCAAATTAAATTATAGGGACTAAATCTCAATCAAGGT
ATAATAAAAGGACCAAAACCATAATTTG
Found at i:99405089 original size:16 final size:16
Alignment explanation
Indices: 99405056--99405085 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
99405046 AGGAAGGTTT
99405056 TTTTTAGGGGGAGAAG
1 TTTTTAGGGGGAGAAG
99405072 TTTTT-GGGGGAGAA
1 TTTTTAGGGGGAGAA
99405086 AGTTATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.23, C:0.00, G:0.43, T:0.33
Consensus pattern (16 bp):
TTTTTAGGGGGAGAAG
Found at i:99405566 original size:25 final size:27
Alignment explanation
Indices: 99405538--99405598 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
99405528 ATATTACGTA
*
99405538 TATATATATTTTATACTAT-TT-TATG
1 TATATATATTTAATACTATATTATATG
* * *
99405563 TATATATCTTTAATATTATATTATTTG
1 TATATATATTTAATACTATATTATATG
99405590 TATATATAT
1 TATATATAT
99405599 ATATTTTTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 16 0.55
26 2 0.07
27 11 0.38
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (27 bp):
TATATATATTTAATACTATATTATATG
Found at i:99405647 original size:22 final size:24
Alignment explanation
Indices: 99405619--99405677 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
99405609 ATATGTTATC
99405619 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
99405641 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
99405666 TTATGTACATAT
1 TTATGTATATAT
99405678 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:99405667 original size:25 final size:25
Alignment explanation
Indices: 99405635--99405683 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
99405625 ATATATCTTA
**
99405635 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
99405660 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
99405684 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:99405860 original size:16 final size:15
Alignment explanation
Indices: 99405836--99405883 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
99405826 TAATTATTAT
*
99405836 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
99405852 TATTTTAATATTTTA
1 TATTTTAATATTTTA
99405867 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
99405883 T
1 T
99405884 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:99405871 original size:7 final size:8
Alignment explanation
Indices: 99405836--99405887 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
99405826 TAATTATTAT
*
99405836 TATTCTAA
1 TATTTTAA
*
99405844 TATTTTGA
1 TATTTTAA
99405852 TATTTTAA
1 TATTTTAA
99405860 TATTTT-A
1 TATTTTAA
99405867 TATTTTATA
1 TATTTTA-A
*
99405876 TATTTTAT
1 TATTTTAA
99405884 TATT
1 TATT
99405888 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Done.