Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 316 of 325
Found at i:99752580 original size:28 final size:28
Alignment explanation
Indices: 99752522--99752585 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
99752512 CTGAAAAAAT
* * *
99752522 AAAATAAAAACAAAATGAATAATAGAAA
1 AAAATAAAAACAAAATAAATAAAACAAA
* *
99752550 AAAATAAAAATAAAATAAATAAAACATA
1 AAAATAAAAACAAAATAAATAAAACAAA
*
99752578 AAACTAAA
1 AAAATAAA
99752586 TAAAATCTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.16
Consensus pattern (28 bp):
AAAATAAAAACAAAATAAATAAAACAAA
Found at i:99752586 original size:21 final size:22
Alignment explanation
Indices: 99752548--99752589 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
99752538 GAATAATAGA
99752548 AAAAAATAAAAATAAAATAAAT
1 AAAAAATAAAAATAAAATAAAT
* *
99752570 AAAACATAAAACT-AAATAAA
1 AAAAAATAAAAATAAAATAAA
99752590 ATCTAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.17
Consensus pattern (22 bp):
AAAAAATAAAAATAAAATAAAT
Found at i:99752596 original size:17 final size:15
Alignment explanation
Indices: 99752517--99752614 Score: 62
Period size: 15 Copynumber: 6.5 Consensus size: 15
99752507 TAAGTCTGAA
99752517 AAAATAAAATAAAAAC-
1 AAAAT-AAAT-AAAACT
* * *
99752533 AAAATGAATAATA-G
1 AAAATAAATAAAACT
*
99752547 AAAA-AAATAAAAAT
1 AAAATAAATAAAACT
99752561 AAAATAAATAAAACAT
1 AAAATAAATAAAAC-T
99752577 AAAACTAAATAAAATCT
1 AAAA-TAAATAAAA-CT
*
99752594 -AAATAATTCAAAA-T
1 AAAATAAAT-AAAACT
99752608 AAAATAA
1 AAAATAA
99752615 CACAAAATCT
Statistics
Matches: 67, Mismatches: 7, Indels: 17
0.74 0.08 0.19
Matches are distributed among these distances:
13 6 0.09
14 12 0.18
15 21 0.31
16 17 0.25
17 10 0.15
18 1 0.01
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.19
Consensus pattern (15 bp):
AAAATAAATAAAACT
Found at i:99752689 original size:14 final size:15
Alignment explanation
Indices: 99752654--99752706 Score: 58
Period size: 14 Copynumber: 3.7 Consensus size: 15
99752644 ACTTAGTCGA
*
99752654 ATAAAAATAA-TAAT
1 ATAATAATAACTAAT
*
99752668 ACTAATAATGAC-AAT
1 A-TAATAATAACTAAT
99752683 ATAATAA-AACTAAT
1 ATAATAATAACTAAT
99752697 ATAATAATAA
1 ATAATAATAA
99752707 ATAAAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 2 0.06
14 17 0.53
15 13 0.41
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (15 bp):
ATAATAATAACTAAT
Found at i:99753229 original size:11 final size:10
Alignment explanation
Indices: 99753191--99753220 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
99753181 TTTAAAATTT
99753191 AATTTTTTTC
1 AATTTTTTTC
99753201 AATTTTTATTC
1 AATTTTT-TTC
99753212 AATTTTTTT
1 AATTTTTTT
99753221 GAAATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (10 bp):
AATTTTTTTC
Found at i:99758515 original size:20 final size:20
Alignment explanation
Indices: 99758490--99758545 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
99758480 AAAAAATTAT
99758490 TTTATTTTAATTAAATAATA
1 TTTATTTTAATTAAATAATA
* *
99758510 TTTATTTCTATTTTAAATATTA
1 TTTATTT-TA-ATTAAATAATA
99758532 TATTATGTTTAATT
1 T-TTAT-TTTAATT
99758546 CTTGAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.24
21 2 0.07
22 12 0.41
23 6 0.21
24 2 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTATTTTAATTAAATAATA
Found at i:99761203 original size:12 final size:12
Alignment explanation
Indices: 99761186--99761212 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
99761176 TCTGTTGTTT
99761186 CCTTGAAAATCC
1 CCTTGAAAATCC
99761198 CCTTGAAAATCC
1 CCTTGAAAATCC
99761210 CCT
1 CCT
99761213 GACGTCTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.37, G:0.07, T:0.26
Consensus pattern (12 bp):
CCTTGAAAATCC
Found at i:99761764 original size:34 final size:34
Alignment explanation
Indices: 99761721--99761788 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
99761711 CAACATTTTT
99761721 TATGTAAGACAACTAAATAGAAGAGGATAGCAAG
1 TATGTAAGACAACTAAATAGAAGAGGATAGCAAG
*
99761755 TATGTAAGACAACTAAATAGAAGAGGATTGCAAG
1 TATGTAAGACAACTAAATAGAAGAGGATAGCAAG
99761789 AATCTTGATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.49, C:0.09, G:0.24, T:0.19
Consensus pattern (34 bp):
TATGTAAGACAACTAAATAGAAGAGGATAGCAAG
Found at i:99762795 original size:51 final size:52
Alignment explanation
Indices: 99762713--99762820 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 52
99762703 TGCCAATAGA
* * *
99762713 CAGAACCCCACCTTCAACGCCGGCGTCTGGTTCACTGCCATCTCTTCTATCT
1 CAGAGCCCCACCTTCAACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
99762765 CAGAGCCCCACCTT-AACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
1 CAGAGCCCCACCTTCAACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
99762816 CAGAG
1 CAGAG
99762821 TCTAACTGGA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 40 0.75
52 13 0.25
ACGTcount: A:0.19, C:0.40, G:0.16, T:0.26
Consensus pattern (52 bp):
CAGAGCCCCACCTTCAACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
Found at i:99763929 original size:15 final size:13
Alignment explanation
Indices: 99763893--99763922 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
99763883 ATAAAACATA
*
99763893 AACCTTAACCCCC
1 AACCTTAAACCCC
99763906 AACCTTAAACCCC
1 AACCTTAAACCCC
99763919 AACC
1 AACC
99763923 CCTTAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.50, G:0.00, T:0.13
Consensus pattern (13 bp):
AACCTTAAACCCC
Found at i:99764070 original size:19 final size:18
Alignment explanation
Indices: 99764046--99764088 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
99764036 CTATAATGAT
99764046 AATTAATTCAATATTTTAA
1 AATTAATT-AATATTTTAA
99764065 AATTAA-TAATATTTTAA
1 AATTAATTAATATTTTAA
99764082 AATTAAT
1 AATTAAT
99764089 ACTATCTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 16 0.70
18 1 0.04
19 6 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTAATTAATATTTTAA
Found at i:99764332 original size:41 final size:40
Alignment explanation
Indices: 99764212--99764357 Score: 158
Period size: 39 Copynumber: 3.7 Consensus size: 40
99764202 TCATATTTGT
* *
99764212 GGCGTTTTTCAAAAAA-CGCCGCTAAAGATC-AGCATTAGC
1 GGCGTTTTT-AAAAAAGCGCCGCTAAAGATCGATCTTTAGC
* *
99764251 GGCGTTTTTTAAAAAGCGCCGCTAAAGGT-G-TACTTATAGC
1 GGCGTTTTTAAAAAAGCGCCGCTAAAGATCGAT-CTT-TAGC
* *
99764291 GGCGTTTCTTAAAAAAGCGCCGCTAATGCTCGATCTTTAGC
1 GGCGTTT-TTAAAAAAGCGCCGCTAAAGATCGATCTTTAGC
*
99764332 GGCGTTTTT-AAAAAGCGCCGCGAAAG
1 GGCGTTTTTAAAAAAGCGCCGCTAAAG
99764358 CCACTAAAAT
Statistics
Matches: 91, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
38 5 0.05
39 38 0.42
40 13 0.14
41 30 0.33
42 4 0.04
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (40 bp):
GGCGTTTTTAAAAAAGCGCCGCTAAAGATCGATCTTTAGC
Found at i:99764525 original size:39 final size:40
Alignment explanation
Indices: 99764447--99764534 Score: 124
Period size: 39 Copynumber: 2.2 Consensus size: 40
99764437 TACATATTGC
* *
99764447 GGCGTTTTTACAAAAGCGCCGCTAATACTCAATCTTTAGT
1 GGCGTTTTTACAAAAGCGCCGCAAATACTCAATCCTTAGT
* **
99764487 GGCGTTTTTA-AAAAGCGCCGCAAATGCTCGCTCCTTAGT
1 GGCGTTTTTACAAAAGCGCCGCAAATACTCAATCCTTAGT
99764526 GGCGTTTTT
1 GGCGTTTTT
99764535 CATTCAAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 33 0.77
40 10 0.23
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (40 bp):
GGCGTTTTTACAAAAGCGCCGCAAATACTCAATCCTTAGT
Found at i:99769594 original size:450 final size:439
Alignment explanation
Indices: 99768704--99769630 Score: 1055
Period size: 450 Copynumber: 2.1 Consensus size: 439
99768694 CAAAAAAAAA
* * *
99768704 TTATTGAACCGAAATGGGTCGAGGATAAATCAGTTATTTTTGCGCTGATGCTGTTGCTTGAATGG
1 TTATTGAACCGAAATGGGTCGAGGATAAATCACTTATTGTTGCGCTGATGCTCTTGCTTGAATGG
*
99768769 GAAGTAATCCTAGTTTGCTTTCAAATTTCAATTCTAGGAACTCAACTATGTTTGTCATTTTGATA
66 GAAGTAATCCTAGTTTGCTTTCAAACTTCAATTCTAGGAACTCAACTATGTTTGTCATTTTGATA
*
99768834 TGCCAAACTTTATGGCTAGCTAAGTAAAAGCCGATAAAGCTAGAGCTCCTATGCATTGTACAATT
131 TGCCAAACTTTATGGCTAGCTAAGTAAAAGCCGATAAAGCTAGAGCTCCTACGCATTGT--AA--
* * *
99768899 TTCTTTTTTCTTTTTTACTTATGAATGCATTTTCCTTTTTAGAAAAAAAAGTTTGTTTACATTAA
192 -TC--TTGTCTTTTTAACTTATGAATGCATGTTCCTTTTTAGAAAAAAAA--TTG-TTACATTAA
* * * * *
99768964 TTATATAATGATAGAGAAAATATGGAGAAAAAATTAAAAATTTTATCATTAAGGGTATGCATGTA
251 TTATATAAT-ATAGACAAAATATAGAGAAAAAATTAAAAATTCTATCAATAAGGGTATCCATGTA
* *
99769029 ATTTTATAGGTTCTGGACAAATTTTGGACATATAACTCTTATTTATAAAATGAATGATTATATTA
315 ATTTTATAGGTTCTGGACAAATGTTGGACATATAACTCTCATTTATAAAATGAATGATTATATTA
*
99769094 TTATATATGTCATATTTTTTAGATTTTATTTTTTATGAAATTTAAATTTTTTTGTAATTT
380 TTATATATGTCATATTTTTTAAATTTTATTTTTTATGAAATTTAAATTTTTTTGTAATTT
* * *
99769154 TTATTGAACCGAAATGGGTCGCGGGTAAATCACTTATTGTTGCGGTGATGCTCTTGCTTGAATGG
1 TTATTGAACCGAAATGGGTCGAGGATAAATCACTTATTGTTGCGCTGATGCTCTTGCTTGAATGG
**
99769219 GAAGTAATCCTAGTTTGCTTTCAAACTTCAATTCTAGGGGCTCTGCTAATGACTATGTTTGTCAT
66 GAAGTAATCCTAGTTTGCTTTCAAACTTCAATTCTA--GGAACT-C--A--ACTATGTTTGTCAT
* * * * *
99769284 TTTGATATGCCAAACTTTATGGCTAGCTATGTAAAAGCTGGTAAGGCTAG-GCCTCCTACGTATT
124 TTTGATATGCCAAACTTTATGGCTAGCTAAGTAAAAGCCGATAAAGCTAGAG-CTCCTACGCATT
* *
99769348 GT-A-C-TGT-TTTTTAACTTATGAATGCATGTTCCTTTTTAGAAAAAGAAA-TG-TACGTTTA-
188 GTAATCTTGTCTTTTTAACTTATGAATGCATGTTCCTTTTTAGAAAAA-AAATTGTTACATTAAT
* *
99769406 TAT-TAAT-T-G-CATAATGATAGAGAAAAAATTACAAATTCTATCAATAAGGGTATCCATGTAA
252 TATATAATATAGACAAAAT-ATAGAGAAAAAATTAAAAATTCTATCAATAAGGGTATCCATGTAA
** * * *
99769467 TTTTATAGGTTCTGGACAAATGTTGGACATATAA-TACCTCCA-TTA-ATTATTATTTATT-TGA
316 TTTTATAGGTTCTGGACAAATGTTGGACATATAACT--CT-CATTTATAAAATGAATGATTAT-A
* * * * * * *
99769528 GTT-TTCTGTTTCGTCTTATTTTTTAAATTTTATTTTTTATGAATTTTGAAGTTTTTTTTTAATT
377 -TTATTATATAT-GTCATATTTTTTAAATTTTATTTTTTATGAAATTT-AAATTTTTTTGTAA-T
99769592 TT
438 TT
* *
99769594 TTATTGAACCGAAATAGGTC-ACGAGT-AATCACTTATT
1 TTATTGAACCGAAATGGGTCGAGGA-TAAATCACTTATT
99769631 TTTTTGCTGA
Statistics
Matches: 412, Mismatches: 46, Indels: 49
0.81 0.09 0.10
Matches are distributed among these distances:
436 6 0.01
437 88 0.21
438 40 0.10
439 25 0.06
440 27 0.07
441 3 0.01
442 6 0.01
444 2 0.00
446 35 0.08
447 5 0.01
450 95 0.23
452 4 0.01
453 1 0.00
454 1 0.00
455 1 0.00
456 1 0.00
457 72 0.17
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.42
Consensus pattern (439 bp):
TTATTGAACCGAAATGGGTCGAGGATAAATCACTTATTGTTGCGCTGATGCTCTTGCTTGAATGG
GAAGTAATCCTAGTTTGCTTTCAAACTTCAATTCTAGGAACTCAACTATGTTTGTCATTTTGATA
TGCCAAACTTTATGGCTAGCTAAGTAAAAGCCGATAAAGCTAGAGCTCCTACGCATTGTAATCTT
GTCTTTTTAACTTATGAATGCATGTTCCTTTTTAGAAAAAAAATTGTTACATTAATTATATAATA
TAGACAAAATATAGAGAAAAAATTAAAAATTCTATCAATAAGGGTATCCATGTAATTTTATAGGT
TCTGGACAAATGTTGGACATATAACTCTCATTTATAAAATGAATGATTATATTATTATATATGTC
ATATTTTTTAAATTTTATTTTTTATGAAATTTAAATTTTTTTGTAATTT
Found at i:99771744 original size:43 final size:43
Alignment explanation
Indices: 99771682--99771765 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
99771672 CGAACCATAA
* *
99771682 AAATTAATAGAACATAGATCATACCTGCATAAATCACATACGT
1 AAATTAATAGAACACAGATCATACCTACATAAATCACATACGT
*
99771725 AAATTAATAGAACACAGATCATACCTACATAAATTACATAC
1 AAATTAATAGAACACAGATCATACCTACATAAATCACATAC
99771766 CTTAAACACG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.49, C:0.19, G:0.07, T:0.25
Consensus pattern (43 bp):
AAATTAATAGAACACAGATCATACCTACATAAATCACATACGT
Found at i:99774631 original size:39 final size:39
Alignment explanation
Indices: 99774570--99774737 Score: 273
Period size: 39 Copynumber: 4.3 Consensus size: 39
99774560 GCTCTGATGA
* * *
99774570 GCTTCAGTTAGCCTTCGGGCTTCCGATTAGCACTTATGT
1 GCTTCAATTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
*
99774609 GCTTTAATTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAATTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
* *
99774648 GCTTCAGTTAACCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAATTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
99774687 GCTTCAATTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAATTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
*
99774726 GCTTCAGTTAGC
1 GCTTCAATTAGC
99774738 ACAAATTTCG
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 119 1.00
ACGTcount: A:0.15, C:0.27, G:0.21, T:0.36
Consensus pattern (39 bp):
GCTTCAATTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
Found at i:99776141 original size:32 final size:32
Alignment explanation
Indices: 99776097--99776224 Score: 159
Period size: 32 Copynumber: 3.8 Consensus size: 32
99776087 TTGATCAGTG
* *
99776097 AAAAGTGGTAGCTCCGGCTACCTAATAGATAA
1 AAAAATGGTAGCTCCGGCTACCTGATAGATAA
*
99776129 AAAAATAGTAGCTCCGGCTACCTGATCAG-TGAA
1 AAAAATGGTAGCTCCGGCTACCTGAT-AGAT-AA
99776162 TAGTGAAAAGTGGTAGCTCCGGCTACCTGATAGATAA
1 -A---AAAA-TGGTAGCTCCGGCTACCTGATAGATAA
99776199 AAAAATGGTAGCTCCGGCTACCTGAT
1 AAAAATGGTAGCTCCGGCTACCTGAT
99776225 CAATGAATAG
Statistics
Matches: 84, Mismatches: 4, Indels: 16
0.81 0.04 0.15
Matches are distributed among these distances:
32 45 0.54
33 8 0.10
34 1 0.01
36 1 0.01
37 8 0.10
38 21 0.25
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (32 bp):
AAAAATGGTAGCTCCGGCTACCTGATAGATAA
Found at i:99776178 original size:38 final size:37
Alignment explanation
Indices: 99776093--99776236 Score: 141
Period size: 32 Copynumber: 4.1 Consensus size: 37
99776083 CTACTTGATC
*
99776093 AGTGAAAAGTGGTAGCTCCGGCTACCTAAT-AGAT-AA-
1 AGTGAAAA-TGGTAGCTCCGGCTACCTGATCAG-TGAAT
*
99776129 A---AAAATAGTAGCTCCGGCTACCTGATCAGTGAAT
1 AGTGAAAATGGTAGCTCCGGCTACCTGATCAGTGAAT
99776163 AGTGAAAAGTGGTAGCTCCGGCTACCTGAT-AGAT-AA-
1 AGTGAAAA-TGGTAGCTCCGGCTACCTGATCAG-TGAAT
*
99776199 A---AAAATGGTAGCTCCGGCTACCTGATCAATGAAT
1 AGTGAAAATGGTAGCTCCGGCTACCTGATCAGTGAAT
99776233 AGTG
1 AGTG
99776237 GTAGCTTCGG
Statistics
Matches: 90, Mismatches: 4, Indels: 27
0.74 0.03 0.22
Matches are distributed among these distances:
32 42 0.47
33 15 0.17
34 2 0.02
36 2 0.02
37 8 0.09
38 21 0.23
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (37 bp):
AGTGAAAATGGTAGCTCCGGCTACCTGATCAGTGAAT
Found at i:99776210 original size:70 final size:70
Alignment explanation
Indices: 99776093--99776236 Score: 261
Period size: 70 Copynumber: 2.1 Consensus size: 70
99776083 CTACTTGATC
*
99776093 AGTGAAAAGTGGTAGCTCCGGCTACCTAATAGATAAAAAAATAGTAGCTCCGGCTACCTGATCAG
1 AGTGAAAAGTGGTAGCTCCGGCTACCTAATAGATAAAAAAATAGTAGCTCCGGCTACCTGATCAA
99776158 TGAAT
66 TGAAT
* *
99776163 AGTGAAAAGTGGTAGCTCCGGCTACCTGATAGATAAAAAAATGGTAGCTCCGGCTACCTGATCAA
1 AGTGAAAAGTGGTAGCTCCGGCTACCTAATAGATAAAAAAATAGTAGCTCCGGCTACCTGATCAA
99776228 TGAAT
66 TGAAT
99776233 AGTG
1 AGTG
99776237 GTAGCTTCGG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (70 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTAATAGATAAAAAAATAGTAGCTCCGGCTACCTGATCAA
TGAAT
Found at i:99779658 original size:39 final size:39
Alignment explanation
Indices: 99779597--99779764 Score: 291
Period size: 39 Copynumber: 4.3 Consensus size: 39
99779587 GCTCTGATGA
*
99779597 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
* * *
99779636 GCTTTAATTAGCCTCCGGGCTTCCGGTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
*
99779675 GCTTCAGTTAACCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
99779714 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
99779753 GCTTCAGTTAGC
1 GCTTCAGTTAGC
99779765 ACAGATTTCG
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 120 1.00
ACGTcount: A:0.14, C:0.27, G:0.23, T:0.36
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
Found at i:99780191 original size:24 final size:24
Alignment explanation
Indices: 99780164--99780215 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
99780154 TTAGTAAGTC
*
99780164 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
99780188 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
99780212 AAAT
1 AAAT
99780216 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:99782161 original size:24 final size:24
Alignment explanation
Indices: 99782134--99782185 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
99782124 TTAGTAAGTC
*
99782134 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
99782158 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
99782182 AAAT
1 AAAT
99782186 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:99784635 original size:20 final size:20
Alignment explanation
Indices: 99784610--99784660 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
99784600 TTTAGGGATT
*
99784610 ATTTTGAAACAAATCAGAAA
1 ATTTTGAAACAAATCAAAAA
* *
99784630 ATTTTGGAA-AAATTAAAAA
1 ATTTTGAAACAAATCAAAAA
99784649 ATTTTGGAAACA
1 ATTTT-GAAACA
99784661 GGGTTCACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 13 0.52
20 11 0.44
21 1 0.04
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
ATTTTGAAACAAATCAAAAA
Found at i:99789598 original size:129 final size:128
Alignment explanation
Indices: 99789360--99789752 Score: 546
Period size: 129 Copynumber: 3.0 Consensus size: 128
99789350 AAGATATACA
*
99789360 AACAG-TACTGCCATCATGTTCTTAGAAAGAGTTTAAGTTGCTTAGGACATATACTTAGTCACCA
1 AACAGTTACTGCCAT-ATGTTCTTAGAAAGAGTTTAAGTTGATTAGGACATATACTTAGTCACCA
*
99789424 GT-GAGGGCACTATATATAGATTTAGCGTTTAGCCTTCCTCTTCTTCTCCACAAGTCACAATCAG
65 GTCG-GGACACTATATATAGATTTAGCGTTTAGCCTTCCTCTTCTTCTCCACAAGTCACAATCAG
* *
99789488 AACAGTTACTGCCATTATGTTCTTAGAAAGACTTTAAGTTGATTAGGACATATACTCAGTCACCA
1 AACAGTTACTGCCA-TATGTTCTTAGAAAGAGTTTAAGTTGATTAGGACATATACTTAGTCACCA
* * * * *
99789553 GTCGGGACACTATATATAGATATAGCGTTTAGCCTTACTCCTCTTCTCCACAATTCATAATCAG
65 GTCGGGACACTATATATAGATTTAGCGTTTAGCCTTCCTCTTCTTCTCCACAAGTCACAATCAG
*
99789617 AACAGTCACTG-C---TGTTCTTAGAAAGAGTTTAAGTTGCGTAGGAGTTAGGACATATACTTAG
1 AACAGTTACTGCCATATGTTCTTAGAAAGAGTTTAAG-T---T--GA-TTAGGACATATACTTAG
* *
99789678 TCACCAGTCGGGACACTATATGTAGATTTAGCATTTAGCCTTCCTCTTCTTCTCCACAAGTCACA
59 TCACCAGTCGGGACACTATATATAGATTTAGCGTTTAGCCTTCCTCTTCTTCTCCACAAGTCACA
99789743 ATCAG
124 ATCAG
99789748 AACAG
1 AACAG
99789753 CTGATATTGT
Statistics
Matches: 236, Mismatches: 19, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
124 20 0.08
125 1 0.00
128 7 0.03
129 120 0.51
130 4 0.02
131 84 0.36
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (128 bp):
AACAGTTACTGCCATATGTTCTTAGAAAGAGTTTAAGTTGATTAGGACATATACTTAGTCACCAG
TCGGGACACTATATATAGATTTAGCGTTTAGCCTTCCTCTTCTTCTCCACAAGTCACAATCAG
Found at i:99790334 original size:21 final size:20
Alignment explanation
Indices: 99790304--99790349 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
99790294 GACCAACAAT
* *
99790304 AATTAAATAAATAATTAAAA
1 AATTAAATAAAAAATAAAAA
99790324 AATTATAATAAAAAATAAAAA
1 AATTA-AATAAAAAATAAAAA
99790345 AATTA
1 AATTA
99790350 GCCGTTCATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AATTAAATAAAAAATAAAAA
Found at i:99790342 original size:20 final size:20
Alignment explanation
Indices: 99790304--99790345 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
99790294 GACCAACAAT
*
99790304 AATTAAATAAATAATTAAAA
1 AATTAAATAAATAAATAAAA
99790324 AATTATAATAAA-AAATAAAA
1 AATTA-AATAAATAAATAAAA
99790344 AA
1 AA
99790346 ATTAGCCGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
AATTAAATAAATAAATAAAA
Found at i:99792355 original size:41 final size:40
Alignment explanation
Indices: 99792275--99792361 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 40
99792265 AGACCTTTAA
*
99792275 CGGCGCTTATAAGGAAACGCCGCTATATGTTGAGAATTAG
1 CGGCGCTTATAAGGAAACGCCGCTATATGTTGACAATTAG
* * *
99792315 TGGCGCTTATATGAGAAACGCCGCTATA-GCTTGACCATTAG
1 CGGCGCTTATAAG-GAAACGCCGCTATATG-TTGACAATTAG
99792356 CGGCGC
1 CGGCGC
99792362 CTTGGAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
40 12 0.30
41 28 0.70
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CGGCGCTTATAAGGAAACGCCGCTATATGTTGACAATTAG
Found at i:99793917 original size:79 final size:78
Alignment explanation
Indices: 99793825--99794074 Score: 222
Period size: 79 Copynumber: 3.2 Consensus size: 78
99793815 TGGATAGAGT
* * * * *
99793825 ATTAGTGGCGTTTTGAAAAACGCCGCAACAGAAGTAAAGTGTACTGGAAGCGTTGTCGTTTTAGT
1 ATTAGTGGCGTTTTCAAAAACGCCGCAAAAGAAGTAAAGTTTACT-GAAACGTCGTCGTTTTAGT
99793890 TGAATATATAGGGG
65 TGAATATATAGGGG
* * ** ** * *
99793904 ATTAGTGGCGTTTTTATAGAAAACGCCACAAAAGACAGTTTAGTTTAAAGAAAACGGCGCCGTTT
1 ATTAGTGGCG-TTTT-CA-AAAACGCCGCAAAAGA-AGTAAAGTTTACTG-AAACGTCGTCGTTT
* *
99793969 TAG-T--ATAT-GAGGGT
61 TAGTTGAATATATAGGGG
* * * *
99793983 ATTAGTGGCGCTTTCAAAAACGCCGCAAAATAATTAAAGTTTACTGTACACGTCGTCGTTTTAGT
1 ATTAGTGGCGTTTTCAAAAACGCCGCAAAAGAAGTAAAGTTTACTG-AAACGTCGTCGTTTTAGT
99794048 TGAATATATA-GGG
65 TGAATATATAGGGG
*
99794061 ATTAGCGGCGTTTT
1 ATTAGTGGCGTTTT
99794075 TTAAATAAAC
Statistics
Matches: 131, Mismatches: 31, Indels: 19
0.72 0.17 0.10
Matches are distributed among these distances:
75 23 0.18
76 15 0.11
77 1 0.01
78 21 0.16
79 25 0.19
80 8 0.06
81 1 0.01
82 16 0.12
83 21 0.16
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (78 bp):
ATTAGTGGCGTTTTCAAAAACGCCGCAAAAGAAGTAAAGTTTACTGAAACGTCGTCGTTTTAGTT
GAATATATAGGGG
Found at i:99793971 original size:158 final size:158
Alignment explanation
Indices: 99793744--99794097 Score: 448
Period size: 158 Copynumber: 2.2 Consensus size: 158
99793734 AAAATTAAGA
* ** *
99793744 GATTAGTGGCGTTTTTTTAAAAAAACACCGTAAAAAACAGTATAGTTGAAAGAAAACGGCGTCGT
1 GATTAGTGGCGTTTTTATAAAAAAACACCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGT
* * *
99793809 TTTAGT-TGGAT-AGAGTATTAGTGGCGTTTTGAAAAACGCCGCAACAGAAGTAAAGTGTACTGG
66 TTTAGTAT--ATGAGAGTATTAGTGGCGCTTTCAAAAACGCCGCAAAAGAAGTAAAGTGTACTGG
*
99793872 A-AGCGTTGTCGTTTTAGTTGAATATATAGGG
129 ACA-CGTCGTCGTTTTAGTTGAATATATA-GG
* * * * *
99793903 GATTAGTGGCGTTTTTAT-AGAAAACGCCACAAAAGACAGTTTAGTTTAAAGAAAACGGCGCCGT
1 GATTAGTGGCGTTTTTATAAAAAAACACCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGT
* * * * *
99793967 TTTAGTATATGAGGGTATTAGTGGCGCTTTCAAAAACGCCGCAAAATAATTAAAGTTTACTGTAC
66 TTTAGTATATGAGAGTATTAGTGGCGCTTTCAAAAACGCCGCAAAAGAAGTAAAGTGTACTGGAC
99794032 ACGTCGTCGTTTTAGTTGAATATATAGG
131 ACGTCGTCGTTTTAGTTGAATATATAGG
* * *
99794060 GATTAGCGGCGTTTTT-TAAATAAACACCGCAAAAAACA
1 GATTAGTGGCGTTTTTATAAAAAAACACCACAAAAAACA
99794098 TTTGTGCTTA
Statistics
Matches: 167, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
156 1 0.01
157 34 0.20
158 113 0.68
159 19 0.11
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.29
Consensus pattern (158 bp):
GATTAGTGGCGTTTTTATAAAAAAACACCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGT
TTTAGTATATGAGAGTATTAGTGGCGCTTTCAAAAACGCCGCAAAAGAAGTAAAGTGTACTGGAC
ACGTCGTCGTTTTAGTTGAATATATAGG
Found at i:99795854 original size:8 final size:8
Alignment explanation
Indices: 99795841--99795898 Score: 66
Period size: 8 Copynumber: 7.4 Consensus size: 8
99795831 TGATTATGAT
99795841 AATAGTGG
1 AATAGTGG
99795849 AATAGTGG
1 AATAGTGG
*
99795857 AATAGTGT
1 AATAGTGG
99795865 AAT--TGCG
1 AATAGTG-G
* *
99795872 TATAGTGT
1 AATAGTGG
99795880 AATAGTGG
1 AATAGTGG
99795888 AATAGTGG
1 AATAGTGG
99795896 AAT
1 AAT
99795899 TTTTTGATTG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
6 2 0.05
7 2 0.05
8 35 0.85
9 2 0.05
ACGTcount: A:0.36, C:0.02, G:0.31, T:0.31
Consensus pattern (8 bp):
AATAGTGG
Found at i:99796456 original size:24 final size:23
Alignment explanation
Indices: 99796429--99796474 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
99796419 AACATTATTG
*
99796429 AAATATTCTCATCCGTTTTATCAC
1 AAATATTATCATCC-TTTTATCAC
* *
99796453 AAATGTTATCATTCTTTTATCA
1 AAATATTATCATCCTTTTATCA
99796475 TTTAAGTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (23 bp):
AAATATTATCATCCTTTTATCAC
Found at i:99796727 original size:99 final size:99
Alignment explanation
Indices: 99796556--99796835 Score: 435
Period size: 99 Copynumber: 2.9 Consensus size: 99
99796546 TGTTTACTTT
99796556 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTA
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTA
*
99796621 TTTTATTTTTATATTACCTAATTTTTAAATTAAC
66 TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
99796655 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTA
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTA
99796720 TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
66 TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
* * * ** * *
99796754 -AATTAATAAATACAAATTAAAAGAAAAACTTAACAATGTTTAAAAT-ATT--TTGTCAA-CTTT
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAA-GTTGAATGTCATTAATT-TAAATATTT
99796814 TATTTTATTTTTAAATTACCTA
64 TATTTTATTTTTAAATTACCTA
99796836 CTTAAATTAA
Statistics
Matches: 171, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
96 27 0.16
97 3 0.02
98 37 0.22
99 104 0.61
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (99 bp):
AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTA
TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
Found at i:99796757 original size:15 final size:16
Alignment explanation
Indices: 99796724--99796757 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
99796714 ATTTTATTTT
*
99796724 ATTTTTAAATTACCTA
1 ATTTTTAAATTAACTA
99796740 ATTTTTAAATTAAC-A
1 ATTTTTAAATTAACTA
99796755 ATT
1 ATT
99796758 AATAAATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTTTTAAATTAACTA
Found at i:99796867 original size:5 final size:5
Alignment explanation
Indices: 99796859--99796883 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
99796849 GTATTTAAAG
99796859 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
99796884 ATCACGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:99796970 original size:91 final size:91
Alignment explanation
Indices: 99796801--99797246 Score: 655
Period size: 91 Copynumber: 4.8 Consensus size: 91
99796791 GTTTAAAATA
* *
99796801 TTTTGTCAACTTTTATTTTATTTTTAAATTACCTACTTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG-----TT
99796866 TTATTTTATTTTATTTTAATCACGAAAAAAC
61 TTATTTTATTTTATTTTAATCACGAAAAAAC
* * * *
99796897 TTTTGTCAAATTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTTTATTTAAATTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
* *
99796962 TTATTTTATTTTATTCTAATTAGGAAAAAAC
66 TTATTTTA---T-TT-TAATCACGAAAAAAC
99796993 --TTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
99797055 TTATTTTATTTTAATCACGAAAAAAC
66 TTATTTTATTTTAATCACGAAAAAAC
* *
99797081 ATTTTTTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTAT
1 -TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTAT
*
99797146 TTTATTTTATTTTAATCAGGAAAAAAC
65 TTTATTTTATTTTAATCACGAAAAAAC
* *
99797173 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAAATTAAATTTTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
99797238 TTATTTTAT
66 TTATTTTAT
99797247 ATTATTTTAT
Statistics
Matches: 322, Mismatches: 19, Indels: 23
0.88 0.05 0.06
Matches are distributed among these distances:
88 13 0.04
89 2 0.01
90 1 0.00
91 102 0.32
92 68 0.21
93 50 0.16
94 17 0.05
95 2 0.01
96 67 0.21
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.55
Consensus pattern (91 bp):
TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
TTATTTTATTTTAATCACGAAAAAAC
Found at i:99797239 original size:5 final size:5
Alignment explanation
Indices: 99797231--99797260 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
99797221 TTATTTAAAG
*
99797231 TTTTA TTTTA TTTTA TATTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
99797261 ATCACGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:99797445 original size:9 final size:9
Alignment explanation
Indices: 99797433--99797548 Score: 92
Period size: 9 Copynumber: 12.7 Consensus size: 9
99797423 AAATATATAT
*
99797433 CATATTTTA
1 CATAATTTA
99797442 CATAATTTA
1 CATAATTTA
*
99797451 CATAACTTA
1 CATAATTTA
99797460 CATAA--TA
1 CATAATTTA
99797467 CATAAATATATA
1 CAT-AAT-T-TA
*
99797479 TCATATTTTA
1 -CATAATTTA
99797489 CATAATTTA
1 CATAATTTA
**
99797498 CATAATTCG
1 CATAATTTA
* *
99797507 GATAACTTA
1 CATAATTTA
* *
99797516 CTTAATTAA
1 CATAATTTA
99797525 CATAATTTA
1 CATAATTTA
*
99797534 CATAACTTA
1 CATAATTTA
99797543 CATAAT
1 CATAAT
99797549 ACACAAATAT
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
7 5 0.06
8 2 0.02
9 66 0.80
10 2 0.02
11 1 0.01
12 4 0.05
13 3 0.04
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.41
Consensus pattern (9 bp):
CATAATTTA
Found at i:99797463 original size:27 final size:27
Alignment explanation
Indices: 99797433--99797548 Score: 110
Period size: 27 Copynumber: 4.2 Consensus size: 27
99797423 AAATATATAT
*
99797433 CATATTTTACATAATTTACATAACTTA
1 CATAATTTACATAATTTACATAACTTA
**
99797460 CATAA--TACATAAATATATATCATATTTTA
1 CATAATTTACAT-AAT-T-TA-CATAACTTA
***
99797489 CATAATTTACATAATTCGGATAACTTA
1 CATAATTTACATAATTTACATAACTTA
* *
99797516 CTTAATTAACATAATTTACATAACTTA
1 CATAATTTACATAATTTACATAACTTA
99797543 CATAAT
1 CATAAT
99797549 ACACAAATAT
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
25 5 0.07
26 3 0.04
27 38 0.55
28 2 0.03
29 13 0.19
30 3 0.04
31 5 0.07
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.41
Consensus pattern (27 bp):
CATAATTTACATAATTTACATAACTTA
Found at i:99801756 original size:51 final size:52
Alignment explanation
Indices: 99801674--99801781 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 52
99801664 TGCCAATAGA
* * *
99801674 CAGAACCCCACCTTCAACGCCGGCGTCTGGTTCACTGCCATCTCTTCTATCT
1 CAGAGCCCCACCTTCAACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
99801726 CAGAGCCCCACCTT-AACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
1 CAGAGCCCCACCTTCAACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
99801777 CAGAG
1 CAGAG
99801782 TCTAACTGGA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 40 0.75
52 13 0.25
ACGTcount: A:0.19, C:0.40, G:0.16, T:0.26
Consensus pattern (52 bp):
CAGAGCCCCACCTTCAACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
Found at i:99802888 original size:15 final size:13
Alignment explanation
Indices: 99802853--99802881 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
99802843 ATAAAACATA
99802853 AACCTT-AACCCC
1 AACCTTAAACCCC
99802865 AACCTTAAACCCC
1 AACCTTAAACCCC
99802878 AACC
1 AACC
99802882 CCTTAAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.14
Consensus pattern (13 bp):
AACCTTAAACCCC
Found at i:99803029 original size:19 final size:18
Alignment explanation
Indices: 99803005--99803047 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
99802995 CTATAATGAT
99803005 AATTAATTCAATATTTTAA
1 AATTAATT-AATATTTTAA
99803024 AATTAA-TAATATTTTAA
1 AATTAATTAATATTTTAA
99803041 AATTAAT
1 AATTAAT
99803048 ACTATATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 16 0.70
18 1 0.04
19 6 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTAATTAATATTTTAA
Found at i:99803250 original size:40 final size:40
Alignment explanation
Indices: 99803174--99803317 Score: 152
Period size: 39 Copynumber: 3.6 Consensus size: 40
99803164 TATTTGTGGT
* * * * *
99803174 GTTTTTCAAAAAACGCCGCTAAAGATC-AGCATTAGCGGC
1 GTTTTTTAAAAAGCGCCGCTAAAGCTCGATCTTTAGCGGC
*
99803213 GTTTTTTAAAAAGCGCCGCTAAAGGT-G-TACTTATAGCGGC
1 GTTTTTTAAAAAGCGCCGCTAAAGCTCGAT-CTT-TAGCGGC
* *
99803253 GTTTCTTAAAAAAGCGCCGCTAATGCTCGATCTTTAGCGGC
1 GTTT-TTTAAAAAGCGCCGCTAAAGCTCGATCTTTAGCGGC
*
99803294 G-TTTTTAAAAAGCGCCGCGAAAGC
1 GTTTTTTAAAAAGCGCCGCTAAAGC
99803318 CACTAAAATC
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
39 43 0.49
40 13 0.15
41 27 0.31
42 4 0.05
43 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (40 bp):
GTTTTTTAAAAAGCGCCGCTAAAGCTCGATCTTTAGCGGC
Found at i:99803484 original size:39 final size:40
Alignment explanation
Indices: 99803406--99803493 Score: 124
Period size: 39 Copynumber: 2.2 Consensus size: 40
99803396 TACATATTGC
* *
99803406 GGCGTTTTTACAAAAGCGCCGCTAATACTCAATCTTTAGT
1 GGCGTTTTTACAAAAGCGCCGCAAATACTCAATCCTTAGT
* **
99803446 GGCGTTTTTA-AAAAGCGCCGCAAATGCTCGCTCCTTAGT
1 GGCGTTTTTACAAAAGCGCCGCAAATACTCAATCCTTAGT
99803485 GGCGTTTTT
1 GGCGTTTTT
99803494 CATTCAAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 33 0.77
40 10 0.23
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (40 bp):
GGCGTTTTTACAAAAGCGCCGCAAATACTCAATCCTTAGT
Found at i:99806467 original size:13 final size:13
Alignment explanation
Indices: 99806449--99806473 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99806439 ATTCTTTTTT
99806449 AAAATATATATTG
1 AAAATATATATTG
99806462 AAAATATATATT
1 AAAATATATATT
99806474 TTTTTTAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AAAATATATATTG
Found at i:99810749 original size:24 final size:25
Alignment explanation
Indices: 99810713--99810768 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
99810703 AATATATTAA
* * *
99810713 ATTAATATGATTATAGTTTAAAT-T
1 ATTAAAATGATTAAACTTTAAATAT
* *
99810737 ATTAAAATTATTAAACTTTATATAT
1 ATTAAAATGATTAAACTTTAAATAT
99810762 ATTAAAA
1 ATTAAAA
99810769 GGTTTAGGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (25 bp):
ATTAAAATGATTAAACTTTAAATAT
Found at i:99811428 original size:79 final size:78
Alignment explanation
Indices: 99811337--99811588 Score: 217
Period size: 80 Copynumber: 3.2 Consensus size: 78
99811327 TGGATAGAGT
* * * * *
99811337 ATTAGTGGCGTTTTGAAAAACGCCGCAACAGAAGTAAAGTGTACTGGAAGCGTTGTCGTTTTAGT
1 ATTAGTGGCGTTTTCAAAAACGCCGCAAAAGAAGTAAAGTTTACT-GAAACGTCGTCGTTTTAGT
99811402 TGAATATATAGGGG
65 TGAATATATAGGGG
* * ** ** * *
99811416 ATTAGTGGCGTTTTTATAGAAAACGCCACAAAAGACAGTTTAGTTTAAAGAAAACGGCGCCGTTT
1 ATTAGTGGCG-TTTT-CA-AAAACGCCGCAAAAGA-AGTAAAGTTTACTG-AAACGTCGTCGTTT
* *
99811481 TAG-T--ATAT-GAGGGT
61 TAGTTGAATATATAGGGG
* * * *
99811495 ATTAGTGGCGCTTTCAAAAACGCCGCAAAATAATTAAAGTTTACTGTACACGTCGTCGTTTTTAG
1 ATTAGTGGCGTTTTCAAAAACGCCGCAAAAGAAGTAAAGTTTACTG-AAACGTCGTCG-TTTTAG
99811560 TTGAAATATATA-GGG
64 TTG-AATATATAGGGG
99811575 ATTAGTGGCGTTTT
1 ATTAGTGGCGTTTT
99811589 TTAAAATAAA
Statistics
Matches: 132, Mismatches: 30, Indels: 21
0.72 0.16 0.11
Matches are distributed among these distances:
75 17 0.13
76 20 0.15
77 2 0.02
78 3 0.02
79 24 0.18
80 27 0.20
81 2 0.02
82 16 0.12
83 21 0.16
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (78 bp):
ATTAGTGGCGTTTTCAAAAACGCCGCAAAAGAAGTAAAGTTTACTGAAACGTCGTCGTTTTAGTT
GAATATATAGGGG
Found at i:99811569 original size:158 final size:157
Alignment explanation
Indices: 99811258--99811612 Score: 439
Period size: 158 Copynumber: 2.2 Consensus size: 157
99811248 AAAATTAAGA
** *
99811258 GATTAGTGGCGTTTTTTAAAAAACACCGTAAAAAACAGTATAGTTGAAAGAAAACGGCGTCGTTT
1 GATTAGTGGCGTTTTTTAAAAAACACCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGTTT
* * *
99811323 TAGTTGGATAGAGTATTAGTGGCGTTTTGAAAAACGCCGCAACAGAAGTAAAGTGTACTGGAAGC
66 TAGTT-GATAGAGTATTAGTGGCGCTTTCAAAAACGCCGCAAAAGAAGTAAAGTGTACTGGAAGC
* *
99811388 GTTGTCGTTTTAGTTGAATATATA-GGG
130 GTCGTCGTTTTAGTTGAATATATATAGG
* * * * *
99811415 GATTAGTGGCGTTTTTATAGAAAACGCCACAAAAGACAGTTTAGTTTAAAGAAAACGGCGCCGTT
1 GATTAGTGGCGTTTTT-TAAAAAACACCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGTT
* * * * *
99811480 TTAGTAT-ATGAGGGTATTAGTGGCGCTTTCAAAAACGCCGCAAAATAATTAAAGTTTACTGTAC
65 TTAGT-TGAT-AGAGTATTAGTGGCGCTTTCAAAAACGCCGCAAAAGAAGTAAAGTGTACTGGA-
99811544 A-CGTCGTCGTTTTTAGTTGAA-ATATATAGG
127 AGCGTCGTCG-TTTTAGTTGAATATATATAGG
*
99811574 GATTAGTGGCGTTTTTTAAAATAAACACCGCAAAAAACA
1 GATTAGTGGCGTTTTTT-AAA-AAACACCACAAAAAACA
99811613 TTTGTGCTTA
Statistics
Matches: 168, Mismatches: 22, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
157 18 0.11
158 103 0.61
159 33 0.20
160 14 0.08
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.30
Consensus pattern (157 bp):
GATTAGTGGCGTTTTTTAAAAAACACCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGTTT
TAGTTGATAGAGTATTAGTGGCGCTTTCAAAAACGCCGCAAAAGAAGTAAAGTGTACTGGAAGCG
TCGTCGTTTTAGTTGAATATATATAGG
Found at i:99813365 original size:8 final size:8
Alignment explanation
Indices: 99813352--99813410 Score: 59
Period size: 8 Copynumber: 7.4 Consensus size: 8
99813342 TGATTATGAT
99813352 AATAGTGG
1 AATAGTGG
99813360 AATAGTGG
1 AATAGTGG
*
99813368 AATAGTGT
1 AATAGTGG
99813376 AAT--TGCG
1 AATAGTG-G
* *
99813383 TATAGTTGT
1 AATAG-TGG
99813392 AATAGTGG
1 AATAGTGG
99813400 AATAGTGG
1 AATAGTGG
99813408 AAT
1 AAT
99813411 TTTTTGATTG
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
6 2 0.05
7 2 0.05
8 31 0.76
9 4 0.10
10 2 0.05
ACGTcount: A:0.36, C:0.02, G:0.31, T:0.32
Consensus pattern (8 bp):
AATAGTGG
Found at i:99813968 original size:24 final size:23
Alignment explanation
Indices: 99813941--99813986 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
99813931 AACATTATTG
*
99813941 AAATATTCTCATCCGTTTTATCAC
1 AAATATTATCATCC-TTTTATCAC
* *
99813965 AAATGTTATCATTCTTTTATCA
1 AAATATTATCATCCTTTTATCA
99813987 TTTAAGTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (23 bp):
AAATATTATCATCCTTTTATCAC
Found at i:99814260 original size:15 final size:16
Alignment explanation
Indices: 99814228--99814260 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
99814218 TTTATTTTAT
*
99814228 TTTTTAAATTACCTAA
1 TTTTTAAATTAACTAA
99814244 TTTTTAAATTAAC-AA
1 TTTTTAAATTAACTAA
99814259 TT
1 TT
99814261 AATAAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTTTAAATTAACTAA
Found at i:99814265 original size:98 final size:95
Alignment explanation
Indices: 99814066--99814289 Score: 346
Period size: 98 Copynumber: 2.3 Consensus size: 95
99814056 GTTTACTTTA
99814066 AATTAATAAATGCAAATTAAAAG-AAGAC-TAACAGTTGAAGTCATTAATTTAAATATTTTATTT
1 AATTAATAAATGCAAATTAAAAGAAAGACTTAACAGTTGAAGTCATTAATTTAAATATTTTATTT
*
99814129 TATTTTATATTACCTAATTTTTAAATTAAC
66 TATTTTAAATTACCTAATTTTTAAATTAAC
*
99814159 AAATAAT-AATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTAT
1 AATTAATAAATGCAAATTAAAAGAAAGACTTAAC-AGTTGAA-GTCATTAATTTAAATATTTTAT
99814223 TTTATTTTTTAAATTACCTAATTTTTAAATTAAC
64 TTTA--TTTTAAATTACCTAATTTTTAAATTAAC
* *
99814257 AATTAATAAATACAAATATAAAAGAAAAACTTA
1 AATTAATAAATGCAAAT-TAAAAGAAAGACTTA
99814290 CAATGTTTAA
Statistics
Matches: 118, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
92 15 0.13
93 11 0.09
94 4 0.03
95 7 0.06
96 26 0.22
98 33 0.28
99 8 0.07
100 14 0.12
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.39
Consensus pattern (95 bp):
AATTAATAAATGCAAATTAAAAGAAAGACTTAACAGTTGAAGTCATTAATTTAAATATTTTATTT
TATTTTAAATTACCTAATTTTTAAATTAAC
Found at i:99814323 original size:96 final size:96
Alignment explanation
Indices: 99814069--99814338 Score: 288
Period size: 96 Copynumber: 2.8 Consensus size: 96
99814059 TACTTTAAAT
* * *
99814069 TAATAAATGCAAATTAAAAG-AAGAC-TAAC-AGTTG-AAGTCATTAATTTAAATATTTTATTT-
1 TAAT-AATACAAATTAAAAGAAAAACTTAACAAGTTGAAAATCATT-ATTTAAATATTTTATTTA
* *
99814129 TATTTTATATTACCTAATTTTTAAATTAACAAA
64 TTTTTTAAATTACCTAATTTTTAAATTAACAAA
* * **
99814162 TAATAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTATTTTA
1 TAATAATACAAATTAAAAGAAAAACTTAACAAGTTGAAAATCATT-ATTTAAATATTTTA-TTTA
*
99814227 TTTTTTAAATTACCTAATTTTTAAATTAACAAT
64 TTTTTTAAATTACCTAATTTTTAAATTAACAAA
* * *
99814260 TAATAAATACAAATATAAAAGAAAAACTT-ACAATGTTTAAAAT-ATT-TTGTCAA-CTTTTATT
1 TAAT-AATACAAAT-TAAAAGAAAAACTTAACAA-GTTGAAAATCATTATT-TAAATATTTTATT
99814321 TATTTTTTAAATTACCTA
62 TATTTTTTAAATTACCTA
99814339 CTTAAATTAA
Statistics
Matches: 156, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
92 15 0.10
93 9 0.06
94 4 0.03
95 5 0.03
96 42 0.27
97 10 0.06
98 37 0.24
99 15 0.10
100 19 0.12
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.42
Consensus pattern (96 bp):
TAATAATACAAATTAAAAGAAAAACTTAACAAGTTGAAAATCATTATTTAAATATTTTATTTATT
TTTTAAATTACCTAATTTTTAAATTAACAAA
Found at i:99814373 original size:5 final size:5
Alignment explanation
Indices: 99814363--99814387 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
99814353 GTATTTAAAG
99814363 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
99814388 ATCACGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:99814472 original size:27 final size:27
Alignment explanation
Indices: 99814408--99814476 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
99814398 AATTTTGTCA
99814408 AATTTTATTTTATTTTAAATTACTAATT
1 AATTTTATTTTA-TTTAAATTACTAATT
** ** *
99814436 AATTAAATTTTATTTAAATTTTTATTT
1 AATTTTATTTTATTTAAATTACTAATT
*
99814463 TATTTTATTTTATT
1 AATTTTATTTTATT
99814477 CTAATTAGGA
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
27 23 0.70
28 10 0.30
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (27 bp):
AATTTTATTTTATTTAAATTACTAATT
Found at i:99814609 original size:90 final size:89
Alignment explanation
Indices: 99814298--99814740 Score: 515
Period size: 90 Copynumber: 4.9 Consensus size: 89
99814288 TACAATGTTT
* * *
99814298 AAAATATTTTGTCAACTTTTATTTATTTTTTAAATTACCTACTTAAATTAAAATTGTATTTAAAG
1 AAAAAATTTTGTCTACTTTTATTT-TTTTTTAAATTACCTAATTAAATT-AAATTGTATTTAAAG
99814363 TTTTATTTTATTTTATTTTATTTTAATCACG-
64 -----TTTTATTTTATTTTA-TTTAATCACGA
* * * * *
99814394 AAAAAATTTTGTCAAATTTTATTTTATTTTAAATTA-CTAATT-AATTAAATTTTATTTAAATTT
1 AAAAAATTTTGTCTACTTTTATTTTTTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTT
* * *
99814457 TTATTTTATTTTATTTTAT-TCTA
66 TTATTTTATTTTATTTAATCACGA
*
99814480 ATTAGGAAAA-CTTGTCTACTTTTATTTTTATTTTAAATTACCTAATTAAATTAAATTGTATTTA
1 A--A--AAAATTTTGTCTACTTTTATTTTT-TTTTAAATTACCTAATTAAATTAAATTGTATTTA
99814544 AAGTTTTATTTTATTTTATTTAATCACGA
61 AAGTTTTATTTTATTTTATTTAATCACGA
* *
99814573 AAAAACATTTT-TCTACTTTTATTTATTTTTTTAATTACCTAATTAAAGTAAATTGTATTTAAAG
1 AAAAA-ATTTTGTCTACTTTTATTT-TTTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG
*
99814637 TTTTATTTT-TTTTATTTTAATCAGGA
64 TTTTATTTTATTTTA-TTTAATCACGA
* * * *
99814663 AAAAACTTTTGTCTACTTTTATTTTATTTTAAATTACCTAAATAAATTAAATTTTA-TTAAAGTT
1 AAAAAATTTTGTCTACTTTTATTTTTTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTT
99814727 TTATTTTATTTTAT
66 TTATTTTATTTTAT
99814741 ATTATTTTAT
Statistics
Matches: 304, Mismatches: 28, Indels: 38
0.82 0.08 0.10
Matches are distributed among these distances:
85 1 0.00
86 6 0.02
87 15 0.05
88 17 0.06
89 59 0.19
90 100 0.33
91 11 0.04
92 50 0.16
93 7 0.02
94 5 0.02
95 11 0.04
96 22 0.07
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (89 bp):
AAAAAATTTTGTCTACTTTTATTTTTTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTT
TTATTTTATTTTATTTAATCACGA
Found at i:99814691 original size:179 final size:178
Alignment explanation
Indices: 99814304--99814740 Score: 546
Period size: 179 Copynumber: 2.4 Consensus size: 178
99814294 GTTTAAAATA
* * *
99814304 TTTTGTCAACTTTTATTTATTTTTTAAATTACCTACTTAAATTAAAATTGTATTTAAAGTTTTAT
1 TTTTGTCTACTTTTATTT-TATTTTAAATTACCTAATTAAATT-AAATTGTATTTAAAG-----T
99814369 TTTATTTTATTTTATTTTAATCACGAAAAAATTTTGTCAAATTTTATTTTATTTTAAATTACTAA
59 TTTATTTTATTTTA-TTTAATCACGAAAAAATTTTGTCAAATTTTATTTTATTTTAAATTACTAA
* * * * ** *
99814434 TTAATTAAATTTTATTTAAATTTTTATTTTATTTTATTTTATTCTAATTAGGAAAAC
123 TTAAGTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTAATC-AAGGAGAAAAAC
99814491 --TTGTCTACTTTTATTTTTATTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTA-TTTTATTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
* * * *
99814554 TTATTTTATTTAATCACGAAAAAACATTTT-TCTACTTTTATTTATTTTTTTAATTACCTAATTA
65 TTATTTTATTTAATCACG-AAAAA-ATTTTGTCAAATTTTATTT-TATTTTAAATTA-CTAATT-
99814618 AAGTAAATTGTATTTAAAGTTTTATTTT-TTTTATTTTAATC-AGGA-AAAAAC
125 AAGTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTAATCAAGGAGAAAAAC
* *
99814669 TTTTGTCTACTTTTATTTTATTTTAAATTACCTAAATAAATTAAATTTTA-TTAAAGTTTTATTT
1 TTTTGTCTACTTTTATTTTATTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
99814733 TATTTTAT
66 TATTTTAT
99814741 ATTATTTTAT
Statistics
Matches: 226, Mismatches: 16, Indels: 25
0.85 0.06 0.09
Matches are distributed among these distances:
178 37 0.16
179 66 0.29
180 28 0.12
181 18 0.08
182 25 0.11
184 15 0.07
185 34 0.15
186 3 0.01
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (178 bp):
TTTTGTCTACTTTTATTTTATTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
TATTTTATTTAATCACGAAAAAATTTTGTCAAATTTTATTTTATTTTAAATTACTAATTAAGTAA
ATTGTATTTAAAGTTTTATTTTATTTTATTTTAATCAAGGAGAAAAAC
Found at i:99814733 original size:5 final size:5
Alignment explanation
Indices: 99814725--99814754 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
99814715 TTTATTAAAG
*
99814725 TTTTA TTTTA TTTTA TATTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
99814755 ATCACGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:99814935 original size:9 final size:9
Alignment explanation
Indices: 99814923--99815038 Score: 71
Period size: 9 Copynumber: 12.7 Consensus size: 9
99814913 AAATATATAT
*
99814923 CATATTTTA
1 CATAATTTA
99814932 CATAATTTA
1 CATAATTTA
*
99814941 CATAACTTA
1 CATAATTTA
99814950 CATAA--TA
1 CATAATTTA
99814957 CATAAATATATA
1 CAT-AAT-T-TA
*
99814969 TCATATTTTA
1 -CATAATTTA
99814979 CATAATTTA
1 CATAATTTA
99814988 CATAAATTT-
1 CAT-AATTTA
*
99814997 CGGATAACTTA
1 C--ATAATTTA
* *
99815008 CTTAATTAA
1 CATAATTTA
99815017 CAT-A-TTA
1 CATAATTTA
*
99815024 CATAACTTA
1 CATAATTTA
99815033 CATAAT
1 CATAAT
99815039 ACACAAATAT
Statistics
Matches: 84, Mismatches: 11, Indels: 24
0.71 0.09 0.20
Matches are distributed among these distances:
7 10 0.12
8 4 0.05
9 48 0.57
10 11 0.13
11 4 0.05
12 4 0.05
13 3 0.04
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.41
Consensus pattern (9 bp):
CATAATTTA
Found at i:99820323 original size:12 final size:12
Alignment explanation
Indices: 99820306--99820332 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
99820296 ATAACACATC
99820306 ACCTTAACCCCA
1 ACCTTAACCCCA
99820318 ACCTTAACCCCA
1 ACCTTAACCCCA
99820330 ACC
1 ACC
99820333 CCTTAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.52, G:0.00, T:0.15
Consensus pattern (12 bp):
ACCTTAACCCCA
Found at i:99820496 original size:16 final size:17
Alignment explanation
Indices: 99820467--99820499 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
99820457 AATTTCAATA
*
99820467 TTTTAAATTATAATACT
1 TTTTAAAATATAATACT
99820484 TTTTAAAAT-TAATACT
1 TTTTAAAATATAATACT
99820500 ATATCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTTAAAATATAATACT
Found at i:99823873 original size:14 final size:14
Alignment explanation
Indices: 99823836--99823883 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
99823826 TCATCTTGTA
*
99823836 TTATTTTTTAAAAT
1 TTATTTTTTTAAAT
*
99823850 TTATTTTTTTAATT
1 TTATTTTTTTAAAT
* *
99823864 TTCTTTTTTTGTAAT
1 TTATTTTTTT-AAAT
99823879 TTATT
1 TTATT
99823884 AGTTTTAACA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 21 0.78
15 6 0.22
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (14 bp):
TTATTTTTTTAAAT
Found at i:99825310 original size:21 final size:20
Alignment explanation
Indices: 99825280--99825325 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
99825270 GACCAACAAT
* *
99825280 AATTAAATAAATAATTAAAA
1 AATTAAATAAAAAATAAAAA
99825300 AATTATAATAAAAAATAAAAA
1 AATTA-AATAAAAAATAAAAA
99825321 AATTA
1 AATTA
99825326 GCCGTTCATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AATTAAATAAAAAATAAAAA
Found at i:99825318 original size:20 final size:20
Alignment explanation
Indices: 99825280--99825321 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
99825270 GACCAACAAT
*
99825280 AATTAAATAAATAATTAAAA
1 AATTAAATAAATAAATAAAA
99825300 AATTATAATAAA-AAATAAAA
1 AATTA-AATAAATAAATAAAA
99825320 AA
1 AA
99825322 ATTAGCCGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
AATTAAATAAATAAATAAAA
Found at i:99827328 original size:41 final size:40
Alignment explanation
Indices: 99827248--99827334 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 40
99827238 AGACCTTTAA
*
99827248 CGGCGCTTATAAGGAAACGCCGCTATATGTTGAGAATTAG
1 CGGCGCTTATAAGGAAACGCCGCTATATGTTGACAATTAG
* * *
99827288 TGGCGCTTATATGAGAAACGCCGCTATA-GCTTGACCATTAG
1 CGGCGCTTATAAG-GAAACGCCGCTATATG-TTGACAATTAG
99827329 CGGCGC
1 CGGCGC
99827335 CTTGGAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
40 12 0.30
41 28 0.70
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CGGCGCTTATAAGGAAACGCCGCTATATGTTGACAATTAG
Found at i:99828888 original size:79 final size:78
Alignment explanation
Indices: 99828796--99829045 Score: 222
Period size: 79 Copynumber: 3.2 Consensus size: 78
99828786 TGGATAGAGT
* * * * *
99828796 ATTAGTGGCGTTTTGAAAAACGCCGCAACAGAAGTAAAGTGTACTGGAAGCGTTGTCGTTTTAGT
1 ATTAGTGGCGTTTTCAAAAACGCCGCAAAAGAAGTAAAGTTTACT-GAAACGTCGTCGTTTTAGT
99828861 TGAATATATAGGGG
65 TGAATATATAGGGG
* * ** ** * *
99828875 ATTAGTGGCGTTTTTATAGAAAACGCCACAAAAGACAGTTTAGTTTAAAGAAAACGGCGCCGTTT
1 ATTAGTGGCG-TTTT-CA-AAAACGCCGCAAAAGA-AGTAAAGTTTACTG-AAACGTCGTCGTTT
* *
99828940 TAG-T--ATAT-GAGGGT
61 TAGTTGAATATATAGGGG
* * * *
99828954 ATTAGTGGCGCTTTCAAAAACGCCGCAAAATAATTAAAGTTTACTGTACACGTCGTCGTTTTAGT
1 ATTAGTGGCGTTTTCAAAAACGCCGCAAAAGAAGTAAAGTTTACTG-AAACGTCGTCGTTTTAGT
99829019 TGAATATATA-GGG
65 TGAATATATAGGGG
*
99829032 ATTAGCGGCGTTTT
1 ATTAGTGGCGTTTT
99829046 TTAAATAAAC
Statistics
Matches: 131, Mismatches: 31, Indels: 19
0.72 0.17 0.10
Matches are distributed among these distances:
75 23 0.18
76 15 0.11
77 1 0.01
78 21 0.16
79 25 0.19
80 8 0.06
81 1 0.01
82 16 0.12
83 21 0.16
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (78 bp):
ATTAGTGGCGTTTTCAAAAACGCCGCAAAAGAAGTAAAGTTTACTGAAACGTCGTCGTTTTAGTT
GAATATATAGGGG
Found at i:99828942 original size:158 final size:158
Alignment explanation
Indices: 99828715--99829068 Score: 448
Period size: 158 Copynumber: 2.2 Consensus size: 158
99828705 AAAATTAAGA
* ** *
99828715 GATTAGTGGCGTTTTTTTAAAAAAACACCGTAAAAAACAGTATAGTTGAAAGAAAACGGCGTCGT
1 GATTAGTGGCGTTTTTATAAAAAAACACCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGT
* * *
99828780 TTTAGT-TGGAT-AGAGTATTAGTGGCGTTTTGAAAAACGCCGCAACAGAAGTAAAGTGTACTGG
66 TTTAGTAT--ATGAGAGTATTAGTGGCGCTTTCAAAAACGCCGCAAAAGAAGTAAAGTGTACTGG
*
99828843 A-AGCGTTGTCGTTTTAGTTGAATATATAGGG
129 ACA-CGTCGTCGTTTTAGTTGAATATATA-GG
* * * * *
99828874 GATTAGTGGCGTTTTTAT-AGAAAACGCCACAAAAGACAGTTTAGTTTAAAGAAAACGGCGCCGT
1 GATTAGTGGCGTTTTTATAAAAAAACACCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGT
* * * * *
99828938 TTTAGTATATGAGGGTATTAGTGGCGCTTTCAAAAACGCCGCAAAATAATTAAAGTTTACTGTAC
66 TTTAGTATATGAGAGTATTAGTGGCGCTTTCAAAAACGCCGCAAAAGAAGTAAAGTGTACTGGAC
99829003 ACGTCGTCGTTTTAGTTGAATATATAGG
131 ACGTCGTCGTTTTAGTTGAATATATAGG
* * *
99829031 GATTAGCGGCGTTTTT-TAAATAAACACCGCAAAAAACA
1 GATTAGTGGCGTTTTTATAAAAAAACACCACAAAAAACA
99829069 TTTGTGCTTA
Statistics
Matches: 167, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
156 1 0.01
157 34 0.20
158 113 0.68
159 19 0.11
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.29
Consensus pattern (158 bp):
GATTAGTGGCGTTTTTATAAAAAAACACCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGT
TTTAGTATATGAGAGTATTAGTGGCGCTTTCAAAAACGCCGCAAAAGAAGTAAAGTGTACTGGAC
ACGTCGTCGTTTTAGTTGAATATATAGG
Found at i:99830823 original size:8 final size:8
Alignment explanation
Indices: 99830810--99830867 Score: 66
Period size: 8 Copynumber: 7.4 Consensus size: 8
99830800 TGATTATGAT
99830810 AATAGTGG
1 AATAGTGG
99830818 AATAGTGG
1 AATAGTGG
*
99830826 AATAGTGT
1 AATAGTGG
99830834 AAT--TGCG
1 AATAGTG-G
* *
99830841 TATAGTGT
1 AATAGTGG
99830849 AATAGTGG
1 AATAGTGG
99830857 AATAGTGG
1 AATAGTGG
99830865 AAT
1 AAT
99830868 TTTTTGATTG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
6 2 0.05
7 2 0.05
8 35 0.85
9 2 0.05
ACGTcount: A:0.36, C:0.02, G:0.31, T:0.31
Consensus pattern (8 bp):
AATAGTGG
Found at i:99831425 original size:24 final size:23
Alignment explanation
Indices: 99831398--99831443 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
99831388 AACATTATTG
*
99831398 AAATATTCTCATCCGTTTTATCAC
1 AAATATTATCATCC-TTTTATCAC
* *
99831422 AAATGTTATCATTCTTTTATCA
1 AAATATTATCATCCTTTTATCA
99831444 TTTAAGTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (23 bp):
AAATATTATCATCCTTTTATCAC
Found at i:99831696 original size:99 final size:99
Alignment explanation
Indices: 99831525--99831804 Score: 435
Period size: 99 Copynumber: 2.9 Consensus size: 99
99831515 TGTTTACTTT
99831525 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTA
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTA
*
99831590 TTTTATTTTTATATTACCTAATTTTTAAATTAAC
66 TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
99831624 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTA
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTA
99831689 TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
66 TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
* * * ** * *
99831723 -AATTAATAAATACAAATTAAAAGAAAAACTTAACAATGTTTAAAAT-ATT--TTGTCAA-CTTT
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAA-GTTGAATGTCATTAATT-TAAATATTT
99831783 TATTTTATTTTTAAATTACCTA
64 TATTTTATTTTTAAATTACCTA
99831805 CTTAAATTAA
Statistics
Matches: 171, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
96 27 0.16
97 3 0.02
98 37 0.22
99 104 0.61
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (99 bp):
AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTGAATGTCATTAATTTAAATATTTTA
TTTTATTTTTAAATTACCTAATTTTTAAATTAAC
Found at i:99831726 original size:15 final size:16
Alignment explanation
Indices: 99831693--99831726 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
99831683 ATTTTATTTT
*
99831693 ATTTTTAAATTACCTA
1 ATTTTTAAATTAACTA
99831709 ATTTTTAAATTAAC-A
1 ATTTTTAAATTAACTA
99831724 ATT
1 ATT
99831727 AATAAATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTTTTAAATTAACTA
Found at i:99831836 original size:5 final size:5
Alignment explanation
Indices: 99831828--99831852 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
99831818 GTATTTAAAG
99831828 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
99831853 ATCACGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:99831870 original size:96 final size:96
Alignment explanation
Indices: 99831770--99832243 Score: 679
Period size: 91 Copynumber: 5.0 Consensus size: 96
99831760 GTTTAAAATA
* *
99831770 TTTTGTCAACTTTTATTTTATTTTTAAATTACCTACTTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
99831835 TTATTTTATTTTATTTTAATCACGAAAAAAC
66 TTATTTTATTTTATTTTAATCACGAAAAAAC
* * * *
99831866 TTTTGTCAAATTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTTTATTTAAATTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
* * *
99831931 TTATTTTATTTTATTCTAATTAGGAAAAAAC
66 TTATTTTATTTTATTTTAATCACGAAAAAAC
99831962 --TTGTCTACTTTTATTTTA-TTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG-----TT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
99832019 TTATTTTATTTTATTTTAATCACGAAAAAAC
66 TTATTTTATTTTATTTTAATCACGAAAAAAC
*
99832050 ATTTT-TCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAG-----T
1 -TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTAT
*
99832109 TTTATTTTATTTTATTTTAATCAGGAAAAAAC
65 TTTATTTTATTTTATTTTAATCACGAAAAAAC
* *
99832141 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAAATTAAATTTTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
99832206 TTATTTTATATTATTTTATTTTAATCACGAAAAAAC
66 TTA---T-T-TTATTTTATTTTAATCACGAAAAAAC
99832242 TT
1 TT
99832244 GTAAATAATT
Statistics
Matches: 343, Mismatches: 20, Indels: 25
0.88 0.05 0.06
Matches are distributed among these distances:
88 30 0.09
90 19 0.06
91 120 0.35
93 35 0.10
94 16 0.05
96 94 0.27
99 1 0.00
100 1 0.00
101 27 0.08
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (96 bp):
TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
TTATTTTATTTTATTTTAATCACGAAAAAAC
Found at i:99832155 original size:43 final size:43
Alignment explanation
Indices: 99831929--99832164 Score: 122
Period size: 47 Copynumber: 5.3 Consensus size: 43
99831919 TAAATTTTTA
* *
99831929 TTTTATTTTATTTTATTCTAATTAGGAAAAAAC--TTGTCTAC
1 TTTTATTTTATTTTATTTTAATAAGGAAAAAACTTTTGTCTAC
** * ** * ** *
99831970 TTTTATTTTATTTTAAATTACCTAATTAAATTAAA-TTGTATTTAAAG
1 TTTTATTTTATTTTATTTTA-ATAAGGAAA--AAACTT-T-TGTCTAC
* *
99832017 TTTTATTTTATTTTATTTTAATCACGAAAAAACATTTT-TCTAC
1 TTTTATTTTATTTTATTTTAATAAGGAAAAAAC-TTTTGTCTAC
** * ** * ** *
99832060 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAA-TTGTATTTAAAG
1 TTTTATTTTA-TTTTATTTTA-ATAAGGAAA--AAACTT-T-TGTCTAC
*
99832108 TTTTATTTTATTTTATTTTAATCAGGAAAAAACTTTTGTCTAC
1 TTTTATTTTATTTTATTTTAATAAGGAAAAAACTTTTGTCTAC
99832151 TTTTATTTTATTTT
1 TTTTATTTTATTTT
99832165 TAAATTACCT
Statistics
Matches: 139, Mismatches: 39, Indels: 32
0.66 0.19 0.15
Matches are distributed among these distances:
41 17 0.12
42 5 0.04
43 29 0.21
44 19 0.14
45 10 0.07
46 14 0.10
47 33 0.24
48 12 0.09
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (43 bp):
TTTTATTTTATTTTATTTTAATAAGGAAAAAACTTTTGTCTAC
Found at i:99832207 original size:5 final size:5
Alignment explanation
Indices: 99832199--99832228 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
99832189 TTATTTAAAG
*
99832199 TTTTA TTTTA TTTTA TATTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
99832229 ATCACGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:99832413 original size:9 final size:9
Alignment explanation
Indices: 99832401--99832516 Score: 92
Period size: 9 Copynumber: 12.7 Consensus size: 9
99832391 AAATATATAT
*
99832401 CATATTTTA
1 CATAATTTA
99832410 CATAATTTA
1 CATAATTTA
*
99832419 CATAACTTA
1 CATAATTTA
99832428 CATAA--TA
1 CATAATTTA
99832435 CATAAATATATA
1 CAT-AAT-T-TA
*
99832447 TCATATTTTA
1 -CATAATTTA
99832457 CATAATTTA
1 CATAATTTA
**
99832466 CATAATTCG
1 CATAATTTA
* *
99832475 GATAACTTA
1 CATAATTTA
* *
99832484 CTTAATTAA
1 CATAATTTA
99832493 CATAATTTA
1 CATAATTTA
*
99832502 CATAACTTA
1 CATAATTTA
99832511 CATAAT
1 CATAAT
99832517 ACACAAATAT
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
7 5 0.06
8 2 0.02
9 66 0.80
10 2 0.02
11 1 0.01
12 4 0.05
13 3 0.04
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.41
Consensus pattern (9 bp):
CATAATTTA
Found at i:99832431 original size:27 final size:27
Alignment explanation
Indices: 99832401--99832516 Score: 110
Period size: 27 Copynumber: 4.2 Consensus size: 27
99832391 AAATATATAT
*
99832401 CATATTTTACATAATTTACATAACTTA
1 CATAATTTACATAATTTACATAACTTA
**
99832428 CATAA--TACATAAATATATATCATATTTTA
1 CATAATTTACAT-AAT-T-TA-CATAACTTA
***
99832457 CATAATTTACATAATTCGGATAACTTA
1 CATAATTTACATAATTTACATAACTTA
* *
99832484 CTTAATTAACATAATTTACATAACTTA
1 CATAATTTACATAATTTACATAACTTA
99832511 CATAAT
1 CATAAT
99832517 ACACAAATAT
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
25 5 0.07
26 3 0.04
27 38 0.55
28 2 0.03
29 13 0.19
30 3 0.04
31 5 0.07
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.41
Consensus pattern (27 bp):
CATAATTTACATAATTTACATAACTTA
Found at i:99837708 original size:24 final size:24
Alignment explanation
Indices: 99837676--99837723 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
99837666 TTGCATTCCT
99837676 TTTTATTATATATTTCGTTTCTAA
1 TTTTATTATATATTTCGTTTCTAA
99837700 TTTTATTATATATTTCGTTTCTAA
1 TTTTATTATATATTTCGTTTCTAA
99837724 CTCTTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.04, T:0.62
Consensus pattern (24 bp):
TTTTATTATATATTTCGTTTCTAA
Found at i:99837738 original size:24 final size:24
Alignment explanation
Indices: 99837676--99837732 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
99837666 TTGCATTCCT
*
99837676 TTTTATTATATATTTCGTTTCTAA
1 TTTTAATATATATTTCGTTTCTAA
*
99837700 TTTTATTATATATTTCGTTTCTAA
1 TTTTAATATATATTTCGTTTCTAA
99837724 CTCTTTAAT
1 -T-TTTAAT
99837733 TAATTTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 24 0.80
25 1 0.03
26 5 0.17
ACGTcount: A:0.25, C:0.11, G:0.04, T:0.61
Consensus pattern (24 bp):
TTTTAATATATATTTCGTTTCTAA
Found at i:99838637 original size:26 final size:26
Alignment explanation
Indices: 99838608--99838659 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
99838598 TAAAAGCCAT
* *
99838608 GGCTTTTAGCGGCTCTTTTCCCACAA
1 GGCTTTTAGAGGCGCTTTTCCCACAA
99838634 GGCTTTTAGAGGCGCTTTTCCCACAA
1 GGCTTTTAGAGGCGCTTTTCCCACAA
99838660 ACGCTGCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (26 bp):
GGCTTTTAGAGGCGCTTTTCCCACAA
Found at i:99838683 original size:69 final size:69
Alignment explanation
Indices: 99838567--99838702 Score: 193
Period size: 69 Copynumber: 2.0 Consensus size: 69
99838557 AAAGTCATGA
* * *** *
99838567 CTTTTAGCGGCGCTTTTCCCACAAACGACTCTAAAAGCCATGGCTTTTAGCGGCTCTTTTCCCAC
1 CTTTTAGAGGCGCTTTTCCCACAAACGACTCTAAAAACCACAACTTTTAGCGGCGCTTTTCCCAC
99838632 AAGG
66 AAGG
*
99838636 CTTTTAGAGGCGCTTTTCCCACAAACG-CTGCTAAAAATCACAACTTTTAGCGGCGCTTTTCCCA
1 CTTTTAGAGGCGCTTTTCCCACAAACGACT-CTAAAAACCACAACTTTTAGCGGCGCTTTTCCCA
99838700 CAA
65 CAA
99838703 ACGCCGCTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
68 2 0.03
69 57 0.97
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (69 bp):
CTTTTAGAGGCGCTTTTCCCACAAACGACTCTAAAAACCACAACTTTTAGCGGCGCTTTTCCCAC
AAGG
Found at i:99849163 original size:17 final size:17
Alignment explanation
Indices: 99849141--99849183 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
99849131 CTTAGAGCGA
* *
99849141 AAAAAATTTGGAAATTT
1 AAAAAATTTGAAAAGTT
99849158 AAAAAA-TTGAAAAGTT
1 AAAAAATTTGAAAAGTT
99849174 AGAAAAATTT
1 A-AAAAATTT
99849184 CATTTGTGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 9 0.41
17 11 0.50
18 2 0.09
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.30
Consensus pattern (17 bp):
AAAAAATTTGAAAAGTT
Found at i:99854656 original size:16 final size:17
Alignment explanation
Indices: 99854621--99854656 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
99854611 ATCTAAATAA
*
99854621 AAATGTTGATTTATGTT
1 AAATATTGATTTATGTT
99854638 AAATATTGATTTA-GTT
1 AAATATTGATTTATGTT
99854654 AAA
1 AAA
99854657 ATTTAAGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (17 bp):
AAATATTGATTTATGTT
Found at i:99855973 original size:25 final size:25
Alignment explanation
Indices: 99855945--99855993 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
99855935 GGTTTGAGTT
99855945 AAGAGTGAAACTAGGAGTAGCCAAC
1 AAGAGTGAAACTAGGAGTAGCCAAC
99855970 AAGAGTGAAACTAGGAGTAGCCAA
1 AAGAGTGAAACTAGGAGTAGCCAA
99855994 AGGGCAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.14, G:0.29, T:0.12
Consensus pattern (25 bp):
AAGAGTGAAACTAGGAGTAGCCAAC
Found at i:99866823 original size:213 final size:213
Alignment explanation
Indices: 99866456--99866885 Score: 738
Period size: 213 Copynumber: 2.0 Consensus size: 213
99866446 GAAAGTTCAG
* * *
99866456 TGTGAGTTAACATAACGTACAATTATACAGATAATCAAAATGGATAACAGTTATCAATGTTATTA
1 TGTGAGTCAACATAACGTACAATTATAAAGATAATCAAAACGGATAACAGTTATCAATGTTATTA
*
99866521 CAGAGCAGTACATGGAAGAATTAATCAGTGTATGATTTTGTCATGTGTATGATGCAATGCAAAGA
66 CAGAGCAGTACATGGAAGAATCAATCAGTGTATGATTTTGTCATGTGTATGATGCAATGCAAAGA
*
99866586 GGTTCCTACCCACCATCTGCTGCATATCA-TGAGTTCCCCAAAACCCGTCTACCAAACTCCAAAC
131 GGTTCCTACCCACCATCTGCTGCATACCACT-AGTTCCCCAAAACCCGTCTACCAAACTCCAAAC
*
99866650 AGTGCAATCCCAAGCTCGA
195 AGTGCAAGCCCAAGCTCGA
*
99866669 TGTGAGTCAACATAACGTACAATTATAAAGATAATCAAAACGGATAACAGTTATCAGTGTTATTA
1 TGTGAGTCAACATAACGTACAATTATAAAGATAATCAAAACGGATAACAGTTATCAATGTTATTA
*
99866734 CAGAGCAGTACATGGAAGAATCAATCAGTTTATGAGTTTT-TCATGTGTATGATGCAATGCAAAG
66 CAGAGCAGTACATGGAAGAATCAATCAGTGTATGA-TTTTGTCATGTGTATGATGCAATGCAAAG
* *
99866798 AGGTTCCTACCCACCATCTGCTGCATACCACTAGTTCCCCAAAACTCGTCTACCAAACTCTAAAC
130 AGGTTCCTACCCACCATCTGCTGCATACCACTAGTTCCCCAAAACCCGTCTACCAAACTCCAAAC
99866863 AGTGCAAGCCCAAGCTCGA
195 AGTGCAAGCCCAAGCTCGA
99866882 TGTG
1 TGTG
99866886 GATAATCCAC
Statistics
Matches: 205, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
213 200 0.98
214 5 0.02
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (213 bp):
TGTGAGTCAACATAACGTACAATTATAAAGATAATCAAAACGGATAACAGTTATCAATGTTATTA
CAGAGCAGTACATGGAAGAATCAATCAGTGTATGATTTTGTCATGTGTATGATGCAATGCAAAGA
GGTTCCTACCCACCATCTGCTGCATACCACTAGTTCCCCAAAACCCGTCTACCAAACTCCAAACA
GTGCAAGCCCAAGCTCGA
Found at i:99871463 original size:38 final size:38
Alignment explanation
Indices: 99871401--99871523 Score: 156
Period size: 38 Copynumber: 3.2 Consensus size: 38
99871391 TTTGATGTGA
* * *
99871401 ATCCGGGCTTAAAGACCTGCAGGCTTCGTGCTGGTAATAT
1 ATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTAT
*
99871441 ATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTAT
1 ATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTAT
* * *
99871479 ATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTAT
1 ATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTAT
*
99871517 ATTCGGG
1 ATCCGGG
99871524 CCTTCGTGCC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 62 0.84
39 5 0.07
40 7 0.09
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (38 bp):
ATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTAT
Found at i:99871581 original size:43 final size:43
Alignment explanation
Indices: 99871516--99871619 Score: 190
Period size: 43 Copynumber: 2.4 Consensus size: 43
99871506 GCTGGTATTA
99871516 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCCGGTGATGTG
* *
99871559 TATTCGGGCCTTCGTGCTTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCCGGTGATGTG
99871602 TATTCGGGCCTTCGTGCC
1 TATTCGGGCCTTCGTGCC
99871620 GGTGATGTGT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.10, C:0.26, G:0.33, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCCGGTGATGTG
Found at i:99871622 original size:27 final size:27
Alignment explanation
Indices: 99871584--99871646 Score: 126
Period size: 27 Copynumber: 2.3 Consensus size: 27
99871574 GCTTAGCAGG
99871584 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGTATTCGGGC
99871611 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGTATTCGGGC
99871638 CTTCGTGCC
1 CTTCGTGCC
99871647 TAGCAGGCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.06, C:0.25, G:0.35, T:0.33
Consensus pattern (27 bp):
CTTCGTGCCGGTGATGTGTATTCGGGC
Found at i:99871624 original size:70 final size:70
Alignment explanation
Indices: 99871541--99871689 Score: 262
Period size: 70 Copynumber: 2.1 Consensus size: 70
99871531 GCCTAGCAAG
* * *
99871541 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCTTAGCAGGCTTCGTGCCGGTGATGTGTATT
1 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGTGTATT
99871606 CGGGC
66 CGGGC
99871611 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGTGTATT
1 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGTGTATT
*
99871676 TGGGC
66 CGGGC
99871681 CTTCGTGCC
1 CTTCGTGCC
99871690 TAGCAGGCTT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 75 1.00
ACGTcount: A:0.09, C:0.24, G:0.34, T:0.33
Consensus pattern (70 bp):
CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGTGTATT
CGGGC
Found at i:99871714 original size:113 final size:113
Alignment explanation
Indices: 99871516--99871732 Score: 380
Period size: 113 Copynumber: 1.9 Consensus size: 113
99871506 GCTGGTATTA
* * *
99871516 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCTTAGC
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTACCGATGATGTGTATTCGGGCCTTCGTGCCTAGC
*
99871581 AGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCGGTGATGTG
66 AGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCGGTGATGTG
* *
99871629 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGTGTATTTGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTACCGATGATGTGTATTCGGGCCTTCGTGCCTAGC
99871694 AGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCC
66 AGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCC
99871733 TAGCAGGTGT
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 98 1.00
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.32
Consensus pattern (113 bp):
TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTACCGATGATGTGTATTCGGGCCTTCGTGCCTAGC
AGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCGGTGATGTG
Found at i:99871753 original size:43 final size:43
Alignment explanation
Indices: 99871611--99871739 Score: 222
Period size: 43 Copynumber: 3.0 Consensus size: 43
99871601 GTATTCGGGC
99871611 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
* * *
99871654 CTTCGTACCGATGATGTGTATTTGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
*
99871697 CTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
99871740 TGTAATGCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.31
Consensus pattern (43 bp):
CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
Found at i:99872155 original size:45 final size:44
Alignment explanation
Indices: 99872079--99872196 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 44
99872069 TTATTTGAGC
* * *
99872079 CTTT-GAGCTTAGCAGACTATAATGCCAGTGAAAT-ACTATTCGGG
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCGGG
99872123 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGG
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGG
* * *
99872167 C-CTCGAGCCTAGCAAGCGA-AATGCCGGTGA
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
99872197 TTTGAGAAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
42 11 0.17
43 15 0.23
44 10 0.15
45 29 0.44
46 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (44 bp):
CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGG
Found at i:99878808 original size:12 final size:12
Alignment explanation
Indices: 99878791--99878816 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
99878781 ATTGAATTTC
99878791 AATTAATTTTAT
1 AATTAATTTTAT
99878803 AATTAATTTTAT
1 AATTAATTTTAT
99878815 AA
1 AA
99878817 ATTTTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
AATTAATTTTAT
Found at i:99883945 original size:25 final size:26
Alignment explanation
Indices: 99883838--99883961 Score: 73
Period size: 25 Copynumber: 4.8 Consensus size: 26
99883828 ATAAGAGTCG
**
99883838 TAATCGGGAAG-TTTAAGAGAGCCA-A
1 TAATCGGGAAGCTCCAA-AGAGCCATA
** *
99883863 T-ATCGGGAAGCTCCGGAGAGTCAT-
1 TAATCGGGAAGCTCCAAAGAGCCATA
* * *
99883887 TAATTCGGAAAGCTCATGAAAGAGCC-TT
1 TAA-TCGGGAAGCTC--CAAAGAGCCATA
99883915 TAATCGGGAAGCTCCAAAGAGCCATA
1 TAATCGGGAAGCTCCAAAGAGCCATA
*
99883941 T-ATCGGGACGCT-CATAAGAGC
1 TAATCGGGAAGCTCCA-AAGAGC
99883962 TACAGTGTGT
Statistics
Matches: 76, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
24 18 0.24
25 27 0.36
26 12 0.16
27 11 0.14
28 8 0.11
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (26 bp):
TAATCGGGAAGCTCCAAAGAGCCATA
Found at i:99884428 original size:21 final size:21
Alignment explanation
Indices: 99884404--99884445 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
99884394 GAATTTAGCA
99884404 TCAATTTAATACAATTCATAT
1 TCAATTTAATACAATTCATAT
*
99884425 TCAATTTAATCCAATTCATAT
1 TCAATTTAATACAATTCATAT
99884446 CTTAGGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (21 bp):
TCAATTTAATACAATTCATAT
Found at i:99886523 original size:27 final size:27
Alignment explanation
Indices: 99886473--99886613 Score: 162
Period size: 27 Copynumber: 5.2 Consensus size: 27
99886463 GTGACGAAGT
99886473 CACCAGATACAGATAT-TGTGGCAGAGC
1 CACCAGA-ACAGATATATGTGGCAGAGC
* *
99886500 TACTAGAACAGATATATGTGGCAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
* * *
99886527 CACCAGATCAGATA-ATCGTGGCATAAC
1 CACCAGAACAGATATAT-GTGGCAGAGC
*
99886554 CACCAGAACAGATATATGTGACAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
* *
99886581 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGAACAGATATA-TGTGGCAGAGC
99886608 CACCAG
1 CACCAG
99886614 GACGCTTCCT
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 11 0.11
27 83 0.86
28 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGAGC
Found at i:99886548 original size:54 final size:54
Alignment explanation
Indices: 99886455--99886613 Score: 198
Period size: 54 Copynumber: 3.0 Consensus size: 54
99886445 GCGAGGCTGC
* * * *
99886455 CAGATAT-TGTGAC-GAAGTCACCAGATACAGAT-ATTGTGGCAGAGCTACTAGAA
1 CAGATATATGTGACAG-AGCCACCAGAT-CAGATAATTGTGGCAGAACCACCAGAA
* * *
99886508 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAACCACCAGAA
1 CAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAACCACCAGAA
* *
99886562 CAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAACCACCAG
99886614 GACGCTTCCT
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
53 12 0.13
54 80 0.86
55 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAACCACCAGAA
Found at i:99888251 original size:26 final size:26
Alignment explanation
Indices: 99888211--99888319 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
99888201 ATGAAATTCC
*
99888211 TATCATGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAACCCAT
*
99888237 TATTATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
99888263 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
99888289 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
99888315 TATCA
1 TATCA
99888320 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:99894104 original size:55 final size:55
Alignment explanation
Indices: 99893991--99894105 Score: 142
Period size: 55 Copynumber: 2.1 Consensus size: 55
99893981 CGGGTGCTAG
* ** * *
99893991 ACACGGGCGTGTCACACACCCGTGCTGTTTTAACAGGTTCATGCACGATTTTTCC
1 ACACGGGCGTGTCACACACCCGTGCTGTTTTAACAGGCTCAACCACGATATGTCC
* * *
99894046 ACACGGGCGTGTCGCACACCCGTGTTGTTTTGACAGGCTCAACCACGACTATGT-C
1 ACACGGGCGTGTCACACACCCGTGCTGTTTTAACAGGCTCAACCACGA-TATGTCC
99894101 ACACG
1 ACACG
99894106 ACCATGGCGT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
55 48 0.94
56 3 0.06
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.25
Consensus pattern (55 bp):
ACACGGGCGTGTCACACACCCGTGCTGTTTTAACAGGCTCAACCACGATATGTCC
Found at i:99903691 original size:73 final size:73
Alignment explanation
Indices: 99903614--99903759 Score: 265
Period size: 73 Copynumber: 2.0 Consensus size: 73
99903604 AGTTATTAAA
*
99903614 AATAAAATAATCCCGAAAAGAAATAAAAGAAAAGTTAAAATGGCCTTATTACAACCCAAAAATAA
1 AATAAAATAATCCCGAAAAGAAATAAAAGAAAAGTTAAAATGGCATTATTACAACCCAAAAATAA
99903679 ATAATAAT
66 ATAATAAT
* *
99903687 AATAAAATAATCTCGAAAAGAAATAAAAGAAAAGTTAAAATGGCATTATTATAACCCAAAAATAA
1 AATAAAATAATCCCGAAAAGAAATAAAAGAAAAGTTAAAATGGCATTATTACAACCCAAAAATAA
99903752 ATAATAAT
66 ATAATAAT
99903760 TAAAGGAAAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.60, C:0.10, G:0.08, T:0.22
Consensus pattern (73 bp):
AATAAAATAATCCCGAAAAGAAATAAAAGAAAAGTTAAAATGGCATTATTACAACCCAAAAATAA
ATAATAAT
Found at i:99904278 original size:24 final size:24
Alignment explanation
Indices: 99904246--99904370 Score: 180
Period size: 24 Copynumber: 5.1 Consensus size: 24
99904236 GCCTAGCCTC
*
99904246 TTTATATAACTGGGGCAAAAGCCCT
1 TTTA-ATAACTGGGGCATAAGCCCT
* *
99904271 TTTAATAACTGGGACATAAACCCT
1 TTTAATAACTGGGGCATAAGCCCT
*
99904295 TTTGAA-AACTGGGGCGTAAGCCCCT
1 TTT-AATAACTGGGGCATAAG-CCCT
99904320 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
99904344 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
99904368 TTT
1 TTT
99904371 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
24 64 0.71
25 26 0.29
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
TTTAATAACTGGGGCATAAGCCCT
Found at i:99904321 original size:49 final size:48
Alignment explanation
Indices: 99904246--99904370 Score: 180
Period size: 49 Copynumber: 2.6 Consensus size: 48
99904236 GCCTAGCCTC
*
99904246 TTTATATAACTGGGGCAAAAGCCCTTTTAATAACTGGGACATAAACCCT
1 TTTA-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGACATAAACCCT
* * *
99904295 TTTGAA-AACTGGGGCGTAAGCCCCTTTTAATAACTGGGGCATAAGCCCT
1 TTT-AATAACTGGGGCATAAG-CCCTTTTAATAACTGGGACATAAACCCT
99904344 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
99904371 GCACTTCCTC
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
48 21 0.31
49 46 0.68
50 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (48 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGACATAAACCCT
Found at i:99904446 original size:20 final size:20
Alignment explanation
Indices: 99904421--99904459 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
99904411 TATGAATACA
99904421 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
*
99904441 TCATGTGCGTATCATACAT
1 TCATGTGCATATCATACAT
99904460 ACCATGTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:99904465 original size:20 final size:20
Alignment explanation
Indices: 99904422--99904466 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
99904412 ATGAATACAT
**
99904422 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
*
99904442 CATGTGCGTATCATACATAC
1 CATGTGCATATCATACATAC
99904462 CATGT
1 CATGT
99904467 CTATCAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:99904541 original size:24 final size:25
Alignment explanation
Indices: 99904503--99904549 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
99904493 ACATATAAAC
*
99904503 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAATGGTCATTTTTA
99904528 CCTA-GGGTAAAATGGTCATTTT
1 CCTAGGGGTAAAATGGTCATTTT
99904550 CATATTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (25 bp):
CCTAGGGGTAAAATGGTCATTTTTA
Found at i:99904852 original size:21 final size:20
Alignment explanation
Indices: 99904818--99904857 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
99904808 TGGGCCAGAA
*
99904818 AGCCCATTGGGCCCTACTTC
1 AGCCCATTGGGCCCAACTTC
*
99904838 AGCCCCTTGAGGCCCAACTT
1 AGCCCATTG-GGCCCAACTT
99904858 ACCGTGAACG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.17, C:0.40, G:0.20, T:0.23
Consensus pattern (20 bp):
AGCCCATTGGGCCCAACTTC
Found at i:99907951 original size:40 final size:40
Alignment explanation
Indices: 99907876--99908052 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
99907866 ACCCAAGTAT
* * *
99907876 CTTCGGGAT-TTAG-CCGAATATAACAACTCGTACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
99907915 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
99907955 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
99907995 CTTCGGGACATAGCCCGGATAGAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
99908035 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
99908053 TTATCATCCG
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 101 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:99913806 original size:24 final size:24
Alignment explanation
Indices: 99913774--99913898 Score: 187
Period size: 24 Copynumber: 5.2 Consensus size: 24
99913764 GCCTAGCCTT
*
99913774 TTTTAATAACTGGGGCAAAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
*
99913798 TTTTAATAACTGAGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
* *
99913822 TTTTGATAACTGGGGCGTAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
**
99913846 TTTTTAATAACTGGGGTGTAAGCCC
1 -TTTTAATAACTGGGGCATAAGCCC
99913871 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
99913895 TTTT
1 TTTT
99913899 GCACTTCCTC
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
24 69 0.76
25 22 0.24
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (24 bp):
TTTTAATAACTGGGGCATAAGCCC
Found at i:99913853 original size:49 final size:49
Alignment explanation
Indices: 99913774--99913898 Score: 189
Period size: 49 Copynumber: 2.6 Consensus size: 49
99913764 GCCTAGCCTT
*
99913774 TTTTAATAACTGGGGCAAAAGCCC-TTTTAATAACTGAGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGAGGCATAAGCCC
* * * **
99913822 TTTTGATAACTGGGGCGTAAGCCCTTTTTAATAACTGGGGTGTAAGCCC
1 TTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGAGGCATAAGCCC
99913871 TTTTAATAACTGGGGCATAAGCCCTTTT
1 TTTTAATAACTGGGGCATAAGCCCTTTT
99913899 GCACTTCCTC
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
48 21 0.31
49 47 0.69
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (49 bp):
TTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGAGGCATAAGCCC
Found at i:99913873 original size:73 final size:73
Alignment explanation
Indices: 99913754--99913899 Score: 222
Period size: 73 Copynumber: 2.0 Consensus size: 73
99913744 TCTTTATCAT
*
99913754 ATAACTGGAGGCCTAGCCTTTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGAGGCATAAG
1 ATAACTGGAGGCCTAGCCCTTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGAGGCATAAG
99913819 CCCTTTTG
66 CCCTTTTG
* *** *
99913827 ATAACTGG-GGCGTAAGCCCTTTTTAATAACTGGGGTGTAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGGAGGCCT-AGCCCTTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGAGGCATAA
99913891 GCCCTTTTG
65 GCCCTTTTG
99913900 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
72 4 0.06
73 62 0.94
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (73 bp):
ATAACTGGAGGCCTAGCCCTTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGAGGCATAAG
CCCTTTTG
Found at i:99913973 original size:20 final size:20
Alignment explanation
Indices: 99913948--99914014 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
99913938 TTATGAATAC
99913948 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
99913968 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* * *
99913988 GTTATGTGCGTATCATACAT
1 ATCATGTGCATATCATACAT
*
99914008 ACCATGT
1 ATCATGT
99914015 CTATCAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:99918348 original size:24 final size:23
Alignment explanation
Indices: 99918289--99918350 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
99918279 TCGAATTCTC
* *
99918289 TTATTTTCCC-CTCTTTTTCTTT
1 TTATTTTCCCACTTTTTTTATTT
* *
99918311 TGATTTTTCTCACTTTATTTTATTT
1 TTA-TTTTCCCACTTT-TTTTATTT
99918336 TTATTTTCCCACTTT
1 TTATTTTCCCACTTT
99918351 CTTCCTTTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
22 2 0.06
23 6 0.19
24 14 0.45
25 9 0.29
ACGTcount: A:0.11, C:0.21, G:0.02, T:0.66
Consensus pattern (23 bp):
TTATTTTCCCACTTTTTTTATTT
Found at i:99926732 original size:38 final size:39
Alignment explanation
Indices: 99926679--99926752 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 39
99926669 TTGGTTTTAG
*
99926679 CTTCATCTAATCATAAACAACAAACTAATT-AGAGATGA
1 CTTCATCTAAACATAAACAACAAACTAATTAAGAGATGA
* *
99926717 CTTCATCTAAACATAATCAATAAACTAATTAAGAGA
1 CTTCATCTAAACATAAACAACAAACTAATTAAGAGA
99926753 GAATTTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 27 0.84
39 5 0.16
ACGTcount: A:0.49, C:0.18, G:0.07, T:0.27
Consensus pattern (39 bp):
CTTCATCTAAACATAAACAACAAACTAATTAAGAGATGA
Found at i:99930503 original size:42 final size:42
Alignment explanation
Indices: 99930444--99930528 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
99930434 CTAGGTGAAG
99930444 GGACCAAGAGCGAGTTTTAGGAGGATAGAGAATGGAAGAATA
1 GGACCAAGAGCGAGTTTTAGGAGGATAGAGAATGGAAGAATA
99930486 GGACCAAGAGCGAGTTTTAGGAGGATAGAGAATGGAAGAATA
1 GGACCAAGAGCGAGTTTTAGGAGGATAGAGAATGGAAGAATA
99930528 G
1 G
99930529 AAAAAAAGGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.40, C:0.07, G:0.36, T:0.16
Consensus pattern (42 bp):
GGACCAAGAGCGAGTTTTAGGAGGATAGAGAATGGAAGAATA
Found at i:99931609 original size:14 final size:14
Alignment explanation
Indices: 99931590--99931643 Score: 58
Period size: 14 Copynumber: 3.8 Consensus size: 14
99931580 GTCATTTATG
99931590 AAATATCTA-AAAAT
1 AAATAT-TATAAAAT
99931604 AAATATTATAAAAT
1 AAATATTATAAAAT
*
99931618 AAA-ATTGATATAAT
1 AAATATT-ATAAAAT
99931632 AAAATATTATAA
1 -AAATATTATAA
99931644 TAAAAATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 5 0.15
14 20 0.59
15 6 0.18
16 3 0.09
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (14 bp):
AAATATTATAAAAT
Found at i:99932081 original size:46 final size:46
Alignment explanation
Indices: 99932014--99932101 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
99932004 AATGATTTTT
* *
99932014 GCATTAATTTTATCAAAGAGCTTAGAAGTGTCATCGCAACCTATGA
1 GCATTAATCTTATCAAAGAGCTTAGAAGTGTCATCCCAACCTATGA
* *
99932060 GCATTAATCTTCTCAAGGAGCTTAGAAGTGTCATCCCAACCT
1 GCATTAATCTTATCAAAGAGCTTAGAAGTGTCATCCCAACCT
99932102 TTCAGGAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (46 bp):
GCATTAATCTTATCAAAGAGCTTAGAAGTGTCATCCCAACCTATGA
Found at i:99933483 original size:14 final size:15
Alignment explanation
Indices: 99933466--99933498 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
99933456 ACCTTAGCTT
99933466 TAAATACT-TAAAAA
1 TAAATACTATAAAAA
*
99933480 TAAATATTATAAAAA
1 TAAATACTATAAAAA
99933495 TAAA
1 TAAA
99933499 ATTGACATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATACTATAAAAA
Found at i:99952457 original size:53 final size:55
Alignment explanation
Indices: 99952366--99952481 Score: 166
Period size: 53 Copynumber: 2.1 Consensus size: 55
99952356 TTGACGAAAA
* *
99952366 ATATGCGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT-
1 ATATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATG
* *
99952420 A-ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATG
1 ATATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGATATGGCATCGGTATG
99952474 ATATGTGA
1 ATATGTGA
99952482 ACCGTGTAAG
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
52 1 0.02
53 46 0.84
54 2 0.04
55 6 0.11
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (55 bp):
ATATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATG
Found at i:99954354 original size:25 final size:24
Alignment explanation
Indices: 99954325--99954439 Score: 112
Period size: 22 Copynumber: 4.8 Consensus size: 24
99954315 TTGTTCCTGG
99954325 CGTGCTAAATATCAGAGAGCACAAA
1 CGTGCT-AATATCAGAGAGCACAAA
* ***
99954350 TGTGCT-A-ATCAGAGAGCACTGG
1 CGTGCTAATATCAGAGAGCACAAA
99954372 CGTGCTAAATATCAGAGAGCACAAA
1 CGTGCT-AATATCAGAGAGCACAAA
* **
99954397 TGTGCT-A-ATCAGAGAGCACTGA
1 CGTGCTAATATCAGAGAGCACAAA
99954419 CGTGCTAATATTCAGAGAGCA
1 CGTGCTAATA-TCAGAGAGCA
99954440 TGCTGAAGTC
Statistics
Matches: 72, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
22 35 0.49
23 3 0.04
24 2 0.03
25 32 0.44
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (24 bp):
CGTGCTAATATCAGAGAGCACAAA
Found at i:99954390 original size:47 final size:47
Alignment explanation
Indices: 99954321--99954439 Score: 213
Period size: 47 Copynumber: 2.5 Consensus size: 47
99954311 AGGTTTGTTC
99954321 CTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCA
1 CTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCA
99954368 CTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCA
1 CTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCA
*
99954415 CTGACGTGCT-AATATTCAGAGAGCA
1 CTGGCGTGCTAAATA-TCAGAGAGCA
99954440 TGCTGAAGTC
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
46 4 0.06
47 66 0.94
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (47 bp):
CTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCA
Found at i:99962739 original size:26 final size:26
Alignment explanation
Indices: 99962710--99962760 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
99962700 TGTCTTGGCA
99962710 GACTA-CCATTGTTTATAGTCCCAACG
1 GACTACCCATT-TTTATAGTCCCAACG
*
99962736 GACTACCCCATTTTTATTGTCCCAA
1 GACTA-CCCATTTTTATAGTCCCAA
99962761 TAGACTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 5 0.23
27 12 0.55
28 5 0.23
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (26 bp):
GACTACCCATTTTTATAGTCCCAACG
Done.