Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 324 of 325
Found at i:102045032 original size:3 final size:3
Alignment explanation
Indices: 102045024--102045067 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
102045014 AGCAATTTTA
*
102045024 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT CAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT T
102045068 CTCATTATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:102045161 original size:28 final size:29
Alignment explanation
Indices: 102045097--102045161 Score: 66
Period size: 28 Copynumber: 2.3 Consensus size: 29
102045087 TATATTTGCT
102045097 TATGTA-ATTTTAAATATGTGTCTTATTA
1 TATGTATATTTTAAATATGTGTCTTATTA
* *
102045125 TAT-TAATATTATTATATATTTG-CTTA-TA
1 TATGT-ATATT-TTAAATATGTGTCTTATTA
102045153 TATGTATAT
1 TATGTATAT
102045162 ACATATATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
27 1 0.03
28 13 0.42
29 8 0.26
30 9 0.29
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (29 bp):
TATGTATATTTTAAATATGTGTCTTATTA
Found at i:102045408 original size:17 final size:17
Alignment explanation
Indices: 102045369--102045408 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
102045359 TGCACATTTT
*
102045369 TTTATATGTATATATTA
1 TTTATATGTATATAATA
* *
102045386 TATATATTTATATAATA
1 TTTATATGTATATAATA
102045403 TTTATA
1 TTTATA
102045409 CGCATTTGCG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TTTATATGTATATAATA
Found at i:102048813 original size:29 final size:28
Alignment explanation
Indices: 102048761--102048827 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
102048751 TAAAAAAGTT
*
102048761 ATTTTTAATAAAATTATTGAAATAAATTA
1 ATTTTTAA-AAAATTATTGAAATAAATCA
* *
102048790 ATTTTTAAAAAATT-TATGAGAATAGATCG
1 ATTTTTAAAAAATTAT-TGA-AATAAATCA
102048819 ATTTTTAAA
1 ATTTTTAAA
102048828 TTTAAATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 1 0.03
28 9 0.27
29 23 0.70
ACGTcount: A:0.48, C:0.01, G:0.07, T:0.43
Consensus pattern (28 bp):
ATTTTTAAAAAATTATTGAAATAAATCA
Found at i:102049077 original size:23 final size:23
Alignment explanation
Indices: 102049050--102049093 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
102049040 TATTTTTAAT
*
102049050 AAATTTATTATTAAAGATAATAC
1 AAATTTAATATTAAAGATAATAC
*
102049073 AAATTTAATATTAAATATAAT
1 AAATTTAATATTAAAGATAAT
102049094 TATTTATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
AAATTTAATATTAAAGATAATAC
Found at i:102052009 original size:21 final size:22
Alignment explanation
Indices: 102051983--102052027 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
102051973 TGATATTACA
102051983 TTATTATTATTTT-CTTTCTAT
1 TTATTATTATTTTCCTTTCTAT
* *
102052004 TTATTATTTTTTTCCTTTTTAT
1 TTATTATTATTTTCCTTTCTAT
102052026 TT
1 TT
102052028 TATTTTCGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.76
Consensus pattern (22 bp):
TTATTATTATTTTCCTTTCTAT
Found at i:102052770 original size:31 final size:32
Alignment explanation
Indices: 102052726--102052785 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 32
102052716 ATATTTCTTT
102052726 TTTAAATACTATATATAT-ATATGTATGTATA
1 TTTAAATACTATATATATGATATGTATGTATA
* * * *
102052757 TTTAGATATTATATGTATGATATTTATGT
1 TTTAAATACTATATATATGATATGTATGT
102052786 TATGTACATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 15 0.62
32 9 0.38
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.52
Consensus pattern (32 bp):
TTTAAATACTATATATATGATATGTATGTATA
Found at i:102052771 original size:23 final size:23
Alignment explanation
Indices: 102052738--102052782 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
102052728 TAAATACTAT
102052738 ATATATATATGTATGTATATTTAG
1 ATATATATATGTATG-ATATTTAG
102052762 ATAT-TATATGTATGATATTTA
1 ATATATATATGTATGATATTTA
102052783 TGTTATGTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.33
23 10 0.48
24 4 0.19
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (23 bp):
ATATATATATGTATGATATTTAG
Found at i:102052930 original size:17 final size:17
Alignment explanation
Indices: 102052908--102052970 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
102052898 TTAAATATTG
102052908 TATTTTTATTATGTATA
1 TATTTTTATTATGTATA
* * *
102052925 TATTTTTAATACGGATA
1 TATTTTTATTATGTATA
*
102052942 CATTTTTTATTACTCGTATA
1 TA-TTTTTATTA-T-GTATA
102052962 TATATTTTA
1 TAT-TTTTA
102052971 ATTTTGTATT
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
17 15 0.44
18 8 0.24
19 1 0.03
20 10 0.29
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.57
Consensus pattern (17 bp):
TATTTTTATTATGTATA
Found at i:102052982 original size:35 final size:33
Alignment explanation
Indices: 102052893--102052983 Score: 87
Period size: 35 Copynumber: 2.6 Consensus size: 33
102052883 TACTGTGTAA
102052893 ATATTTTAAATATTGTA-TTTTTATTATGTATAT
1 ATATTTT-AATATTGTATTTTTTATTATGTATAT
**
102052926 AT-TTTTAATACGGATACATTTTTTATTACTCGTATAT
1 ATATTTTAATATTG-T--ATTTTTTATTA-T-GTATAT
*
102052963 ATATTTTAATTTTGTATTTTT
1 ATATTTTAATATTGTATTTTT
102052984 ATTGTTATGC
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
31 5 0.11
32 5 0.11
33 2 0.04
34 1 0.02
35 15 0.33
36 1 0.02
37 9 0.20
38 8 0.17
ACGTcount: A:0.30, C:0.04, G:0.07, T:0.59
Consensus pattern (33 bp):
ATATTTTAATATTGTATTTTTTATTATGTATAT
Found at i:102053055 original size:24 final size:24
Alignment explanation
Indices: 102053009--102053055 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
102052999 CTTTAATACT
* *
102053009 ATATCATTTTTATTTTTATTTTTC
1 ATATCATTCTTATGTTTATTTTTC
102053033 ATATCA-TCTTATGTTTATGTTTT
1 ATATCATTCTTATGTTTAT-TTTT
102053056 TCAAACTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.21, C:0.09, G:0.04, T:0.66
Consensus pattern (24 bp):
ATATCATTCTTATGTTTATTTTTC
Found at i:102053322 original size:3 final size:3
Alignment explanation
Indices: 102053314--102053364 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
102053304 AATTTTACTT
* * * *
102053314 TTA TTA TTA CTA CTA -TA TTA TTA TTA TTA TCA TTA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
102053361 TTA T
1 TTA T
102053365 CATATTTTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:102058484 original size:34 final size:34
Alignment explanation
Indices: 102058445--102058514 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
102058435 AAACTTGATC
102058445 TTAAAATGTTTAGTTTTACCATGAAATACTAGAT
1 TTAAAATGTTTAGTTTTACCATGAAATACTAGAT
*
102058479 TTAAAATGTTTGGTTTTACCATGAAATACTAGAT
1 TTAAAATGTTTAGTTTTACCATGAAATACTAGAT
102058513 TT
1 TT
102058515 TTAGCTATGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.43
Consensus pattern (34 bp):
TTAAAATGTTTAGTTTTACCATGAAATACTAGAT
Found at i:102060977 original size:51 final size:51
Alignment explanation
Indices: 102060901--102061005 Score: 210
Period size: 51 Copynumber: 2.1 Consensus size: 51
102060891 GGCTAGTGTA
102060901 AGCCTTCTTTTCAAGCTGATTCATGTTAAGCATGAAACACTTATCAGCCGT
1 AGCCTTCTTTTCAAGCTGATTCATGTTAAGCATGAAACACTTATCAGCCGT
102060952 AGCCTTCTTTTCAAGCTGATTCATGTTAAGCATGAAACACTTATCAGCCGT
1 AGCCTTCTTTTCAAGCTGATTCATGTTAAGCATGAAACACTTATCAGCCGT
102061003 AGC
1 AGC
102061006 TACTAAGACC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (51 bp):
AGCCTTCTTTTCAAGCTGATTCATGTTAAGCATGAAACACTTATCAGCCGT
Found at i:102065515 original size:20 final size:20
Alignment explanation
Indices: 102065482--102065542 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
102065472 ATATCAGTGG
102065482 ATAATGAAACAATCGATTAAA
1 ATAA-GAAACAATCGATTAAA
* * *
102065503 ATAAGAAATAATCGGTTCAA
1 ATAAGAAACAATCGATTAAA
102065523 ATAAGAAAACAATCGATTAA
1 ATAAG-AAACAATCGATTAA
102065543 CCAAGAGTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.56, C:0.10, G:0.11, T:0.23
Consensus pattern (20 bp):
ATAAGAAACAATCGATTAAA
Found at i:102069551 original size:19 final size:19
Alignment explanation
Indices: 102069527--102069564 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
102069517 ATCCTTATGC
102069527 TTAAAGAGTGATAGTTTAA
1 TTAAAGAGTGATAGTTTAA
102069546 TTAAAGAGTGATAGTTTAA
1 TTAAAGAGTGATAGTTTAA
102069565 GTATGCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (19 bp):
TTAAAGAGTGATAGTTTAA
Found at i:102073194 original size:22 final size:22
Alignment explanation
Indices: 102073145--102073192 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
102073135 ATCCAATCTC
* *
102073145 ATTTTATTTTTACTTTTATATT
1 ATTTTATTTTTAATTTTATATA
102073167 ATTTTA-TTTTAATTTTATATA
1 ATTTTATTTTTAATTTTATATA
102073188 ATTTT
1 ATTTT
102073193 TAACATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (22 bp):
ATTTTATTTTTAATTTTATATA
Found at i:102078222 original size:11 final size:11
Alignment explanation
Indices: 102078208--102078257 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
102078198 ATATTCTTTG
102078208 AATTTTTTTAA
1 AATTTTTTTAA
* *
102078219 AA-TTATTTAT
1 AATTTTTTTAA
102078229 AATTTTTTTAA
1 AATTTTTTTAA
* *
102078240 AAATTTTTTAT
1 AATTTTTTTAA
102078251 AATTTTT
1 AATTTTT
102078258 AAAAAAATAA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
10 8 0.26
11 23 0.74
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
AATTTTTTTAA
Found at i:102078232 original size:21 final size:22
Alignment explanation
Indices: 102078208--102078257 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
102078198 ATATTCTTTG
102078208 AATTTTTTT-AAAATTATTTAT
1 AATTTTTTTAAAAATTATTTAT
*
102078229 AATTTTTTTAAAAATTTTTTAT
1 AATTTTTTTAAAAATTATTTAT
102078251 AATTTTT
1 AATTTTT
102078258 AAAAAAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
AATTTTTTTAAAAATTATTTAT
Found at i:102078262 original size:21 final size:21
Alignment explanation
Indices: 102078208--102078263 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
102078198 ATATTCTTTG
*
102078208 AATTTTTTTAAAATTATTTAT
1 AATTTTTTAAAAATTATTTAT
*
102078229 AATTTTTTTAAAAATTTTTTAT
1 AA-TTTTTTAAAAATTATTTAT
*
102078251 AATTTTTAAAAAA
1 AATTTTTTAAAAA
102078264 ATAAATTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 12 0.39
22 19 0.61
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
AATTTTTTAAAAATTATTTAT
Found at i:102078474 original size:11 final size:12
Alignment explanation
Indices: 102078449--102078477 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
102078439 AACTTAAAAA
102078449 TTAAATTTATTT
1 TTAAATTTATTT
102078461 TTAAATTT-TTT
1 TTAAATTTATTT
102078472 TTAAAT
1 TTAAAT
102078478 CGAATCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
TTAAATTTATTT
Found at i:102078679 original size:6 final size:6
Alignment explanation
Indices: 102078668--102078696 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
102078658 AAGGTGTGTG
102078668 TTGCCT TTGCCT TTGCCT TTGCCT TTGCC
1 TTGCCT TTGCCT TTGCCT TTGCCT TTGCC
102078697 GGGTCTCTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.34, G:0.17, T:0.48
Consensus pattern (6 bp):
TTGCCT
Found at i:102081631 original size:19 final size:19
Alignment explanation
Indices: 102081590--102081634 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
102081580 TGTAATTTGA
* *
102081590 TTAAA-TTGAAAGTTTATG
1 TTAAATTTGAAAGTTGAGG
*
102081608 ATAAATTTGAAAGTTGAGG
1 TTAAATTTGAAAGTTGAGG
102081627 TTAAATTT
1 TTAAATTT
102081635 AATGATTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (19 bp):
TTAAATTTGAAAGTTGAGG
Found at i:102092143 original size:39 final size:39
Alignment explanation
Indices: 102092099--102092354 Score: 458
Period size: 39 Copynumber: 6.6 Consensus size: 39
102092089 GACTTTAGGC
*
102092099 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
102092138 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
* *
102092177 CCAGATATAATTCCAGCACATTGCCTGCGGACATGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
102092216 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
*
102092255 CCAGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
*
102092294 CCGGATATAATTCCAGCACATTGCCTGTGGACCTGAAGT
1 CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
*
102092333 CCGGATATAATTCTAGCACATT
1 CCGGATATAATTCCAGCACATT
102092355 TAATTATGAT
Statistics
Matches: 208, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 208 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATTGCCTGCGGACCTGAAGT
Found at i:102102309 original size:17 final size:17
Alignment explanation
Indices: 102102289--102102327 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
102102279 TAAAAAAAAA
*
102102289 TAATTTTTTTAAAAATT
1 TAATATTTTTAAAAATT
*
102102306 TAATATTTTTAATAATT
1 TAATATTTTTAAAAATT
102102323 TAATA
1 TAATA
102102328 ATGAACTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TAATATTTTTAAAAATT
Found at i:102106171 original size:13 final size:13
Alignment explanation
Indices: 102106153--102106177 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102106143 TATTCAAGTG
102106153 ATAAAGTGTTAAA
1 ATAAAGTGTTAAA
102106166 ATAAAGTGTTAA
1 ATAAAGTGTTAA
102106178 GTGTAAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (13 bp):
ATAAAGTGTTAAA
Found at i:102106397 original size:22 final size:22
Alignment explanation
Indices: 102106347--102106420 Score: 121
Period size: 23 Copynumber: 3.3 Consensus size: 22
102106337 GTGTTATTGA
*
102106347 TCAGTGGTAGCTTCGGCTACGTT
1 TCAGTGGTAGCTTCGGCTAC-AT
102106370 TCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
102106392 TCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
102106414 ATCAGTG
1 -TCAGTG
102106421 TGCACTTATG
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
22 23 0.47
23 26 0.53
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.32
Consensus pattern (22 bp):
TCAGTGGTAGCTTCGGCTACAT
Found at i:102113465 original size:17 final size:17
Alignment explanation
Indices: 102113443--102113480 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
102113433 TTTTATAAAT
*
102113443 TGTGAATTTAT-TTGATA
1 TGTGAATTAATATTGA-A
102113460 TGTGAATTAATATTGAA
1 TGTGAATTAATATTGAA
102113477 TGTG
1 TGTG
102113481 GAAGGAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (17 bp):
TGTGAATTAATATTGAA
Found at i:102113529 original size:13 final size:13
Alignment explanation
Indices: 102113511--102113535 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102113501 TATTCAAGTG
102113511 ATAAAGTGTTAAA
1 ATAAAGTGTTAAA
102113524 ATAAAGTGTTAA
1 ATAAAGTGTTAA
102113536 GTGTAAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (13 bp):
ATAAAGTGTTAAA
Found at i:102113731 original size:23 final size:23
Alignment explanation
Indices: 102113705--102113777 Score: 130
Period size: 23 Copynumber: 3.2 Consensus size: 23
102113695 GTGTTATTGA
102113705 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
102113728 TCAGTGGTAGCTTCGGCTACA-T
1 TCAGTGGTAGCTTCGGCTACATT
*
102113750 TCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
102113773 TCAGT
1 TCAGT
102113778 TGCACTTATG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
22 22 0.46
23 26 0.54
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:102115562 original size:12 final size:12
Alignment explanation
Indices: 102115545--102115573 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
102115535 TTGTGAGTGC
102115545 CAAGTGTTGTCA
1 CAAGTGTTGTCA
102115557 CAAGTGTTGTCA
1 CAAGTGTTGTCA
102115569 CAAGT
1 CAAGT
102115574 CTCACTACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (12 bp):
CAAGTGTTGTCA
Found at i:102118531 original size:30 final size:31
Alignment explanation
Indices: 102118483--102118540 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
102118473 TTATTAGCTA
* *
102118483 TTTTACTTTTTCATTTCTAGGTT-TAAGTGC
1 TTTTACTTTTTCACTTCTAAGTTGTAAGTGC
* *
102118513 TTTTATTTTTTCCCTTCTAAGTTGTAAG
1 TTTTACTTTTTCACTTCTAAGTTGTAAG
102118541 GTACCAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.17, C:0.14, G:0.12, T:0.57
Consensus pattern (31 bp):
TTTTACTTTTTCACTTCTAAGTTGTAAGTGC
Found at i:102127091 original size:23 final size:23
Alignment explanation
Indices: 102127065--102127115 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
102127055 TTCGCAGTTT
* *
102127065 GAGTTAA-TCGAATCGAGTTATTC
1 GAGTTAACTCGAAT-AAGTAATTC
*
102127088 GAGTCAACTCGAATAAGTAATTC
1 GAGTTAACTCGAATAAGTAATTC
102127111 GAGTT
1 GAGTT
102127116 TCGAGTTCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (23 bp):
GAGTTAACTCGAATAAGTAATTC
Found at i:102127268 original size:10 final size:11
Alignment explanation
Indices: 102127255--102127307 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 11
102127245 AATTCAAAAT
102127255 AATTT-TCAAA
1 AATTTATCAAA
102127265 AATTTA--AAA
1 AATTTATCAAA
*
102127274 TATTTAT-AAA
1 AATTTATCAAA
*
102127284 TATTTATCAAA
1 AATTTATCAAA
102127295 ATATTTATCAAA
1 A-ATTTATCAAA
102127307 A
1 A
102127308 TTGACTCTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
9 8 0.22
10 15 0.41
11 3 0.08
12 11 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (11 bp):
AATTTATCAAA
Found at i:102127298 original size:12 final size:12
Alignment explanation
Indices: 102127270--102127308 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
102127260 TCAAAAATTT
102127270 AAAATATTTAT-
1 AAAATATTTATC
102127281 -AAATATTTATC
1 AAAATATTTATC
102127292 AAAATATTTATC
1 AAAATATTTATC
102127304 AAAAT
1 AAAAT
102127309 TGACTCTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.38
12 16 0.62
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (12 bp):
AAAATATTTATC
Found at i:102129835 original size:20 final size:20
Alignment explanation
Indices: 102129803--102129849 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
102129793 TAATAAAATG
*
102129803 TTTTTAT-A-TTTTTAACTAA
1 TTTTTATAAGTTTTTAA-GAA
102129822 TTTTTATAAGTTTTTAAGAA
1 TTTTTATAAGTTTTTAAGAA
102129842 TTTTTATA
1 TTTTTATA
102129850 CGCTTTTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 7 0.28
20 11 0.44
21 7 0.28
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (20 bp):
TTTTTATAAGTTTTTAAGAA
Found at i:102129856 original size:20 final size:20
Alignment explanation
Indices: 102129820--102129857 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
102129810 ATTTTTAACT
*
102129820 AATTTTTATAAGTTTTTAAG
1 AATTTTTATAAGCTTTTAAG
*
102129840 AATTTTTATACGCTTTTA
1 AATTTTTATAAGCTTTTA
102129858 TAAAATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.05, G:0.08, T:0.55
Consensus pattern (20 bp):
AATTTTTATAAGCTTTTAAG
Found at i:102129856 original size:21 final size:19
Alignment explanation
Indices: 102129803--102129866 Score: 60
Period size: 21 Copynumber: 3.2 Consensus size: 19
102129793 TAATAAAATG
102129803 TTTTTAT-A-TTTTTAACTAA
1 TTTTTATAAGTTTTTAA--AA
102129822 TTTTTATAAGTTTTTAAGAA
1 TTTTTATAAGTTTTTAA-AA
*
102129842 TTTTTATACGCTTTTATAAAA
1 TTTTTATAAG-TTTT-TAAAA
102129863 TTTT
1 TTTT
102129867 AAATATTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 7 0.18
20 12 0.31
21 17 0.44
22 3 0.08
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTTATAAGTTTTTAAAA
Found at i:102129975 original size:19 final size:18
Alignment explanation
Indices: 102129928--102129975 Score: 51
Period size: 21 Copynumber: 2.5 Consensus size: 18
102129918 GTTTTATGGA
* *
102129928 TTTTTAGATTTTTAATTT
1 TTTTTATATTTTTAAGTT
102129946 TTTTATAATATTTTATAAGTT
1 TTTT-T-ATATTTT-TAAGTT
102129967 TTTTTATAT
1 TTTTTATAT
102129976 AATTTTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 4 0.16
19 5 0.20
20 7 0.28
21 9 0.36
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (18 bp):
TTTTTATATTTTTAAGTT
Found at i:102129982 original size:23 final size:23
Alignment explanation
Indices: 102129943--102129990 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
102129933 AGATTTTTAA
102129943 TTTTTTTATAATATTTTATAAGT
1 TTTTTTTATAATATTTTATAAGT
102129966 TTTTTTATATAAT-TTTTATAAGT
1 TTTTTT-TATAATATTTTATAAGT
102129989 TT
1 TT
102129991 ATATCAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTTTTTATAATATTTTATAAGT
Found at i:102130010 original size:19 final size:19
Alignment explanation
Indices: 102129968--102130043 Score: 65
Period size: 19 Copynumber: 4.3 Consensus size: 19
102129958 TTATAAGTTT
*
102129968 TTTTATATAATTTTTATAA
1 TTTTATATAATTTTAATAA
*
102129987 GTTTATATCAATTTTAAT-A
1 TTTTATAT-AATTTTAATAA
102130006 TTTTA-AT--TTTTAATAA
1 TTTTATATAATTTTAATAA
* *
102130022 ATTTATA-AATTATAAT-A
1 TTTTATATAATTTTAATAA
102130039 TTTTA
1 TTTTA
102130044 AATATTTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
15 7 0.15
16 5 0.11
17 6 0.13
18 8 0.17
19 12 0.26
20 8 0.17
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (19 bp):
TTTTATATAATTTTAATAA
Found at i:102130018 original size:7 final size:8
Alignment explanation
Indices: 102129997--102130051 Score: 51
Period size: 8 Copynumber: 6.6 Consensus size: 8
102129987 GTTTATATCA
102129997 ATTTTAAT
1 ATTTTAAT
102130005 ATTTTAAT
1 ATTTTAAT
102130013 -TTTTAAT
1 ATTTTAAT
102130020 AAATTTATAA-
1 --ATTT-TAAT
*
102130030 ATTATAAT
1 ATTTTAAT
102130038 ATTTTAAAT
1 ATTTT-AAT
102130047 ATTTT
1 ATTTT
102130052 TTATGATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
7 10 0.26
8 15 0.38
9 8 0.21
10 3 0.08
11 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
ATTTTAAT
Found at i:102130018 original size:15 final size:15
Alignment explanation
Indices: 102129996--102130046 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
102129986 AGTTTATATC
102129996 AATTTTAATATTTTA
1 AATTTTAATATTTTA
*
102130011 ATTTTTAATAAATTTATA
1 AATTTTAAT--ATTT-TA
*
102130029 AATTATAATATTTTA
1 AATTTTAATATTTTA
102130044 AAT
1 AAT
102130047 ATTTTTTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 13 0.43
16 4 0.13
17 4 0.13
18 9 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTTAATATTTTA
Found at i:102130042 original size:33 final size:33
Alignment explanation
Indices: 102129975--102130044 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
102129965 TTTTTTTATA
* *
102129975 TAATTTTTATAAGTTTATATCAATTTTAATATTT
1 TAATTTTTATAAATTTATA-CAATTATAATATTT
102130009 TAATTTTTAATAAATTTATA-AATTATAATATTT
1 TAATTTTT-ATAAATTTATACAATTATAATATTT
102130042 TAA
1 TAA
102130045 ATATTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 15 0.45
34 8 0.24
35 10 0.30
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (33 bp):
TAATTTTTATAAATTTATACAATTATAATATTT
Found at i:102132366 original size:35 final size:35
Alignment explanation
Indices: 102132294--102132398 Score: 176
Period size: 35 Copynumber: 3.0 Consensus size: 35
102132284 ACAACCCACT
* *
102132294 AACCCCCTAACACCCAAATACAACCCCAATTATCCA
1 AACCCCCTAAAACCCAAATACAA-CCCAATTACCCA
102132330 AACCCCCTAAAACCCAAATACAACCCAATTACCCA
1 AACCCCCTAAAACCCAAATACAACCCAATTACCCA
102132365 AACCCCCTAAAACCCAAATACAACCCAA-TACCCA
1 AACCCCCTAAAACCCAAATACAACCCAATTACCCA
102132399 TTAAAACCCT
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
34 6 0.09
35 39 0.58
36 22 0.33
ACGTcount: A:0.45, C:0.44, G:0.00, T:0.11
Consensus pattern (35 bp):
AACCCCCTAAAACCCAAATACAACCCAATTACCCA
Found at i:102132416 original size:35 final size:35
Alignment explanation
Indices: 102132298--102132418 Score: 138
Period size: 35 Copynumber: 3.4 Consensus size: 35
102132288 CCCACTAACC
* * **
102132298 CCCTAACACCCAAATACAACCCCAATTATCCAAACC
1 CCCTAAAACCCAAATACAA-CCCAATTACCCAAAAA
**
102132334 CCCTAAAACCCAAATACAACCCAATTACCCAAACC
1 CCCTAAAACCCAAATACAACCCAATTACCCAAAAA
102132369 CCCTAAAACCCAAATACAACCCAA-TACCCATTAAAA
1 CCCTAAAACCCAAATACAACCCAATTACCCA--AAAA
*
102132405 CCCT-AAGCCCAAAT
1 CCCTAAAACCCAAAT
102132419 CAGAAAAAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
34 6 0.08
35 48 0.62
36 24 0.31
ACGTcount: A:0.45, C:0.41, G:0.01, T:0.13
Consensus pattern (35 bp):
CCCTAAAACCCAAATACAACCCAATTACCCAAAAA
Found at i:102133636 original size:18 final size:19
Alignment explanation
Indices: 102133613--102133652 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
102133603 ATATAGTATG
102133613 ATTTTTAAT-TACTTTATT
1 ATTTTTAATATACTTTATT
* *
102133631 ATTTTTATTATATTTTATT
1 ATTTTTAATATACTTTATT
102133650 ATT
1 ATT
102133653 CTTTTTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTTAATATACTTTATT
Found at i:102133641 original size:3 final size:3
Alignment explanation
Indices: 102133626--102133708 Score: 73
Period size: 3 Copynumber: 28.3 Consensus size: 3
102133616 TTTAATTACT
* * * *
102133626 TTA TTA TTT TTA TTA -TA TT- TTA TTA TTC TTT TTT TGTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* **
102133669 ATA TTA TTA CCA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
102133709 CATTGTTAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
2 6 0.09
3 57 0.88
4 2 0.03
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:102134124 original size:21 final size:21
Alignment explanation
Indices: 102134100--102134175 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
102134090 ACTATTATTT
* *
102134100 TATTTATTTTTATTCCTAGTA
1 TATTTATTTTTAATACTAGTA
* *
102134121 TATTTATTATTAATATTAGTA
1 TATTTATTTTTAATACTAGTA
* *
102134142 TATGTATTTTATTATACTTA-TA
1 TATTTATTTT-TAATAC-TAGTA
*
102134164 TATATATTTTTA
1 TATTTATTTTTA
102134176 TAAATAGTAT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
21 26 0.60
22 15 0.35
23 2 0.05
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (21 bp):
TATTTATTTTTAATACTAGTA
Found at i:102134171 original size:22 final size:23
Alignment explanation
Indices: 102134119--102134173 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 23
102134109 TTATTCCTAG
102134119 TATAT-TTATTATTAATATTAGTA
1 TATATATT-TTATTAATATTAGTA
*
102134142 TATGTATTTTATT-ATACTTA-TA
1 TATATATTTTATTAATA-TTAGTA
102134164 TATATATTTT
1 TATATATTTT
102134174 TATAAATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 14 0.50
23 12 0.43
24 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (23 bp):
TATATATTTTATTAATATTAGTA
Found at i:102134174 original size:23 final size:24
Alignment explanation
Indices: 102134119--102134181 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 24
102134109 TTATTCCTAG
102134119 TATATTTATTATTAATATTAGTATA
1 TATATTT-TTATTAATATTAGTATA
*
102134144 TGTA-TTTTATT-ATACTTA-TATA
1 TATATTTTTATTAATA-TTAGTATA
*
102134166 TATATTTTTATAAATA
1 TATATTTTTATTAATA
102134182 GTATTATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
22 10 0.31
23 14 0.44
24 5 0.16
25 3 0.09
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (24 bp):
TATATTTTTATTAATATTAGTATA
Found at i:102139845 original size:86 final size:86
Alignment explanation
Indices: 102139700--102139949 Score: 270
Period size: 86 Copynumber: 2.9 Consensus size: 86
102139690 CAAACAAGTG
* * * *
102139700 GTGGCTTGTCCACAAAATCCAGTAGCAGA-TTGTTTAATCTGCAAATATGTTGTGCACTCACCAC
1 GTGGCTTGTCCACAAAACCCAGTAG-AAATTTGTTTAATCTTCAAATATGTTGTGCACTCACAAC
* *
102139764 AAGTGGTAGTAACTATAAATAC
65 AAGTGGCAGTAACTACAAATAC
* * * *
102139786 GTGGCTTGTCCACAAAACCCAGTCGAAATTTGTTCAATCTTCAAATATGTTGTGAACTCACAAAA
1 GTGGCTTGTCCACAAAACCCAGTAGAAATTTGTTTAATCTTCAAATATGTTGTGCACTCACAACA
* *
102139851 AGTGACAGTAATTACAAATAC
66 AGTGGCAGTAACTACAAATAC
* ** * * * * * **
102139872 ATGGCTCATCCATAAAACTCAGTGGTAGTTTGTTTAAT-TTGCAACCATGTTGTGCACTCACAAC
1 GTGGCTTGTCCACAAAACCCAGTAGAAATTTGTTTAATCTT-CAAATATGTTGTGCACTCACAAC
102139936 AAGTGGCAGTAACT
65 AAGTGGCAGTAACT
102139950 GAAAATGATT
Statistics
Matches: 135, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
85 4 0.03
86 131 0.97
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (86 bp):
GTGGCTTGTCCACAAAACCCAGTAGAAATTTGTTTAATCTTCAAATATGTTGTGCACTCACAACA
AGTGGCAGTAACTACAAATAC
Found at i:102141415 original size:27 final size:27
Alignment explanation
Indices: 102141290--102141443 Score: 163
Period size: 28 Copynumber: 5.6 Consensus size: 27
102141280 AAAAATTTTC
102141290 TCGCACACTTAGTGCTCAAGAACCGATT
1 TCGCACACTTAGTGCTCAAG-ACCGATT
*
102141318 TCGCACACTTAGTGCTCGGAA-ATCCAATT
1 TCGCACACTTAGTGCTC--AAGA-CCGATT
* * * * *
102141347 T-GCACACTTAATGCTTAAAACCAACT
1 TCGCACACTTAGTGCTCAAGACCGATT
*
102141373 T-GCACACTTAATGCTCAATGACCGATT
1 TCGCACACTTAGTGCTCAA-GACCGATT
102141400 TCGCACA-TTAGTGCTCAATGACCGATT
1 TCGCACACTTAGTGCTCAA-GACCGATT
102141427 TCGCACACTTAGTGCTC
1 TCGCACACTTAGTGCTC
102141444 TGTATCAAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
26 24 0.22
27 33 0.30
28 45 0.41
29 6 0.05
30 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCGCACACTTAGTGCTCAAGACCGATT
Found at i:102148262 original size:28 final size:28
Alignment explanation
Indices: 102148222--102148376 Score: 192
Period size: 28 Copynumber: 5.6 Consensus size: 28
102148212 AAAAATTTTC
102148222 TCGCACACTTAGTGCTCAATAACCGATT
1 TCGCACACTTAGTGCTCAATAACCGATT
*
102148250 TCGCACACTTAGTGCTCGAA-AATCCAATT
1 TCGCACACTTAGTGCTC-AATAA-CCGATT
* * * * *
102148279 T-GCACACTTAATGTTTAA-AACCAACT
1 TCGCACACTTAGTGCTCAATAACCGATT
*
102148305 T-GCACACTTAGTGCTCAATGACCGATT
1 TCGCACACTTAGTGCTCAATAACCGATT
*
102148332 TCGCACACTTAGTGCTCAATGACCGATT
1 TCGCACACTTAGTGCTCAATAACCGATT
102148360 TCGCACACTTAGTGCTC
1 TCGCACACTTAGTGCTC
102148377 GGTATCAAAT
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
26 20 0.18
27 10 0.09
28 74 0.66
29 8 0.07
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCAATAACCGATT
Found at i:102151316 original size:29 final size:30
Alignment explanation
Indices: 102151254--102151316 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
102151244 AGAAATTAAA
* *
102151254 AAATACTTAGAAATTTAAAAATAAAAAATT
1 AAATACTTAGAAATATAAAAATAAAAAATG
* *
102151284 AAATACTTAGAAA-ATAAAAGTAAAGAATG
1 AAATACTTAGAAATATAAAAATAAAAAATG
102151313 AAAT
1 AAAT
102151317 GTAGTCCAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.25
Consensus pattern (30 bp):
AAATACTTAGAAATATAAAAATAAAAAATG
Found at i:102158307 original size:12 final size:12
Alignment explanation
Indices: 102158285--102158315 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
102158275 AAATATAGAC
102158285 AAAAG-AAAAAA
1 AAAAGAAAAAAA
102158296 AAAAGAAAAAAA
1 AAAAGAAAAAAA
102158308 AAAAGAAA
1 AAAAGAAA
102158316 GATAAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:102158309 original size:16 final size:16
Alignment explanation
Indices: 102158285--102158323 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
102158275 AAATATAGAC
*
102158285 AAAAGAAAAAAAAAAG
1 AAAAAAAAAAAAAAAG
*
102158301 AAAAAAAAAAAGAAAG
1 AAAAAAAAAAAAAAAG
102158317 ATAAAAA
1 A-AAAAA
102158324 CTTATCGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (16 bp):
AAAAAAAAAAAAAAAG
Found at i:102160302 original size:27 final size:28
Alignment explanation
Indices: 102160271--102160325 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
102160261 TGCTTAGAGT
*
102160271 TCTATTAAA-TAA-TAACTTTATTTTACA
1 TCTATAAAATTAACTAACTTT-TTTTACA
102160298 TCTATAAAATTAACGTAACTTTTTTTAC
1 TCTATAAAATTAAC-TAACTTTTTTTAC
102160326 TTCAAATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 8 0.33
28 3 0.12
29 6 0.25
30 7 0.29
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (28 bp):
TCTATAAAATTAACTAACTTTTTTTACA
Found at i:102162046 original size:291 final size:290
Alignment explanation
Indices: 102161516--102162104 Score: 946
Period size: 291 Copynumber: 2.0 Consensus size: 290
102161506 CACATGCTAC
*
102161516 TTTGTTATTAATTATTAAAATAATTTAGAAGTTTTAAAAATGTAATTGAATTGGGAAGGGAATGG
1 TTTGTTATTAATTATTAAAATAATTTAGAAGTTTCAAAAATGTAATTGAATTGGGAAGGGAATGG
** * **
102161581 GAATTGGATTCTTGGGTATAACGGTTACTTGGGGAAATATTTAGGGTTTTATGTTGAATTATGGG
66 GAATTGGATTCTTGGGTATAACAATTACTTGGGGAAATATTCAGGGTTTTATACTGAATTATGGG
* * * *
102161646 TTATTTTGGATGGACTAATTCTGCTACAAAGATAAGGGTTCGATAGGGTGGTGATACAATCTAAC
131 TTATTTTGGATGGACTAATTCTGCTACAAAGATAAGGGTACAATAAGGTGATGATACAATCTAAC
* * * *
102161711 AACTTACAAGTGGCCATAGCTATCCAAGATGGTACATTGGTGGATCTGAGATCTGTTTTGCTTAG
196 AACTTACAAGTGGCCATAGCTATCCAAGATAGTACATCGGTGGATCTAAGATCTGTTTTGCTAAG
102161776 GCGGATCCAACAATTTTTGTTGCATGAAGGA
261 GCGGATCCAACAA-TTTTGTTGCATGAAGGA
102161807 TTTGTTATTAATTATTAAAATAATTTAGAAGTTTCAAAAATGTAATTGAATTGGGAAGGGAATGG
1 TTTGTTATTAATTATTAAAATAATTTAGAAGTTTCAAAAATGTAATTGAATTGGGAAGGGAATGG
* * *
102161872 GAATTGGATTCTTGGGTATAACAATTATTTGGGTAAGTATTCAGGGTTTTATACTGAATTATGGG
66 GAATTGGATTCTTGGGTATAACAATTACTTGGGGAAATATTCAGGGTTTTATACTGAATTATGGG
* * *
102161937 TTATTTTGGATGGACTAATTCTTCTACAAAGATAAGGGTACAATAAGGTGATGATTCAATTTAAC
131 TTATTTTGGATGGACTAATTCTGCTACAAAGATAAGGGTACAATAAGGTGATGATACAATCTAAC
* * * *
102162002 AGCTTACAAGTGGCTATAGCTATCCAAGATAGTACATCGGTGGATTTAAGGTCTGTTTTGCTAAG
196 AACTTACAAGTGGCCATAGCTATCCAAGATAGTACATCGGTGGATCTAAGATCTGTTTTGCTAAG
102162067 GCGGATCCAACAATTTTGTTGCATGAAGGA
261 GCGGATCCAACAATTTTGTTGCATGAAGGA
102162097 -TTGTTATT
1 TTTGTTATT
102162105 TCTAGAACAT
Statistics
Matches: 274, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
289 8 0.03
290 17 0.06
291 249 0.91
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (290 bp):
TTTGTTATTAATTATTAAAATAATTTAGAAGTTTCAAAAATGTAATTGAATTGGGAAGGGAATGG
GAATTGGATTCTTGGGTATAACAATTACTTGGGGAAATATTCAGGGTTTTATACTGAATTATGGG
TTATTTTGGATGGACTAATTCTGCTACAAAGATAAGGGTACAATAAGGTGATGATACAATCTAAC
AACTTACAAGTGGCCATAGCTATCCAAGATAGTACATCGGTGGATCTAAGATCTGTTTTGCTAAG
GCGGATCCAACAATTTTGTTGCATGAAGGA
Found at i:102167102 original size:13 final size:13
Alignment explanation
Indices: 102167076--102167109 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
102167066 CTATAATATG
102167076 TTTTTATTCATTTC
1 TTTTT-TTCATTTC
*
102167090 TTTTTTTCTTTTC
1 TTTTTTTCATTTC
102167103 TTTTTTT
1 TTTTTTT
102167110 TTTAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTTTCATTTC
Found at i:102168490 original size:13 final size:13
Alignment explanation
Indices: 102168472--102168497 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102168462 CTTCTTTCTC
102168472 ATATAAAACATGA
1 ATATAAAACATGA
102168485 ATATAAAACATGA
1 ATATAAAACATGA
102168498 GGTATGAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (13 bp):
ATATAAAACATGA
Found at i:102168853 original size:41 final size:40
Alignment explanation
Indices: 102168792--102168994 Score: 212
Period size: 41 Copynumber: 5.0 Consensus size: 40
102168782 ACGCCACTAT
*
102168792 AAGTC-GAGAAATAGCGGCGTTTTCGGAAAAACGCCGCCAA
1 AAGTCTGAGAATTAGCGGCGTTTTC-GAAAAACGCCGCCAA
* *
102168832 AAGTCCGAGAATTAGCGGCGTTTTTC-AAGAAACGCCGCAAA
1 AAGTCTGAGAATTAGCGGCG-TTTTCGAA-AAACGCCGCCAA
* * * *
102168873 AAGTCTAAGAATTCGCGGCATTTTTCCAAAAACGCCGCCAA
1 AAGTCTGAGAATTAGCGGC-GTTTTCGAAAAACGCCGCCAA
* * *
102168914 AAGTCTGAGCATTAGCGGCATTTTTAGAAAAACGCCGCCAA
1 AAGTCTGAGAATTAGCGGC-GTTTTCGAAAAACGCCGCCAA
* * **
102168955 AGGTCTGAGCATTAGCGGCGTTTTTATAAAAACGCCGCCA
1 AAGTCTGAGAATTAGCGGCG-TTTTCGAAAAACGCCGCCA
102168995 TTTATAAAAA
Statistics
Matches: 142, Mismatches: 15, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
40 7 0.05
41 128 0.90
42 7 0.05
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (40 bp):
AAGTCTGAGAATTAGCGGCGTTTTCGAAAAACGCCGCCAA
Found at i:102169000 original size:18 final size:18
Alignment explanation
Indices: 102168977--102169012 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
102168967 TAGCGGCGTT
102168977 TTTATAAAAACGCCGCCA
1 TTTATAAAAACGCCGCCA
102168995 TTTATAAAAACGCCGCCA
1 TTTATAAAAACGCCGCCA
102169013 AAAGTCTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.11, T:0.22
Consensus pattern (18 bp):
TTTATAAAAACGCCGCCA
Found at i:102169038 original size:59 final size:59
Alignment explanation
Indices: 102168936--102169053 Score: 173
Period size: 59 Copynumber: 2.0 Consensus size: 59
102168926 TAGCGGCATT
* *
102168936 TTTAGAAAAACGCCGCCAAAGGTCTGAGCATTAGCGGCGTTTTTATAAAAACGCCGCCA
1 TTTAGAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCCGCCA
* * * * *
102168995 TTTATAAAAACGCCGCCAAAAGTCTGAGTATTAGCGGCTTTTTTGGGAAAACGCCGCCA
1 TTTAGAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCCGCCA
102169054 AAAGTCTAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (59 bp):
TTTAGAAAAACGCCGCCAAAAGTCTGAGCATTAGCGGCGTTTTTAGAAAAACGCCGCCA
Found at i:102169081 original size:25 final size:25
Alignment explanation
Indices: 102169047--102169098 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
102169037 TTGGGAAAAC
*
102169047 GCCGCCAAAAGTCTAAGTATTAGCG
1 GCCGCAAAAAGTCTAAGTATTAGCG
*
102169072 GCCGCAAAAAGTCTGAGTATTAGCG
1 GCCGCAAAAAGTCTAAGTATTAGCG
102169097 GC
1 GC
102169099 GTTTTTGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (25 bp):
GCCGCAAAAAGTCTAAGTATTAGCG
Found at i:102169112 original size:66 final size:66
Alignment explanation
Indices: 102169006--102169139 Score: 205
Period size: 66 Copynumber: 2.0 Consensus size: 66
102168996 TTATAAAAAC
* * * * *
102169006 GCCGCCAAAAGTCTGAGTATTAGCGGCTTTTTTGGGAAAACGCCGCCAAAAGTCTAAGTATTAGC
1 GCCGCAAAAAGTCTGAGTATTAGCGGCGTTTTTGGAAAAACGCCGCAAAAAGTCTAAGCATTAGC
102169071 G
66 G
* *
102169072 GCCGCAAAAAGTCTGAGTATTAGCGGCGTTTTTGGAAAAACGTCGCAAAAAGTCTGAGCATTAGC
1 GCCGCAAAAAGTCTGAGTATTAGCGGCGTTTTTGGAAAAACGCCGCAAAAAGTCTAAGCATTAGC
102169137 G
66 G
102169138 GC
1 GC
102169140 GTTTTTGGAG
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (66 bp):
GCCGCAAAAAGTCTGAGTATTAGCGGCGTTTTTGGAAAAACGCCGCAAAAAGTCTAAGCATTAGC
G
Found at i:102170532 original size:21 final size:21
Alignment explanation
Indices: 102170506--102170546 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
102170496 TAAGGTTAGG
* *
102170506 GGTTTATGGTTTAGAGTTTAA
1 GGTTTAAGATTTAGAGTTTAA
*
102170527 GGTTTAAGATTTAGGGTTTA
1 GGTTTAAGATTTAGAGTTTA
102170547 GGGTCTGATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.46
Consensus pattern (21 bp):
GGTTTAAGATTTAGAGTTTAA
Found at i:102173973 original size:9 final size:9
Alignment explanation
Indices: 102173910--102174046 Score: 103
Period size: 9 Copynumber: 14.6 Consensus size: 9
102173900 ATTGATCATT
*
102173910 ACTTAAATA
1 ACTTACATA
*
102173919 AGTTACATA
1 ACTTACATA
* **
102173928 ACTCATGTA
1 ACTTACATA
102173937 ACTTACATA
1 ACTTACATA
*
102173946 ATTTACATAACA
1 ACTTACAT---A
*
102173958 ACCTACATA
1 ACTTACATA
102173967 ACTTACATA
1 ACTTACATA
102173976 ACTTACATA
1 ACTTACATA
* *
102173985 ATTTATATA
1 ACTTACATA
*
102173994 ACTCACATA
1 ACTTACATA
* *
102174003 ACGTATATAACA
1 AC-T-TA-CATA
102174015 ACTTACATA
1 ACTTACATA
*
102174024 ACTCACATA
1 ACTTACATA
102174033 ACTTACATA
1 ACTTACATA
102174042 ACTTA
1 ACTTA
102174047 ACTAATACAT
Statistics
Matches: 97, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
9 81 0.84
10 3 0.03
11 2 0.02
12 11 0.11
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.32
Consensus pattern (9 bp):
ACTTACATA
Found at i:102173984 original size:57 final size:57
Alignment explanation
Indices: 102173910--102174044 Score: 171
Period size: 57 Copynumber: 2.4 Consensus size: 57
102173900 ATTGATCATT
* * * * **
102173910 ACTTAAATAAGTTACATAACTCATGTAACTTACATAATTTACATAACAACCTACATA
1 ACTTACATAACTTACATAACTCATATAACTCACATAACGTACATAACAACCTACATA
* * * *
102173967 ACTTACATAACTTACATAATTTATATAACTCACATAACGTATATAACAACTTACATA
1 ACTTACATAACTTACATAACTCATATAACTCACATAACGTACATAACAACCTACATA
*
102174024 ACTCACATAACTTACATAACT
1 ACTTACATAACTTACATAACT
102174045 TAACTAATAC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 66 1.00
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.32
Consensus pattern (57 bp):
ACTTACATAACTTACATAACTCATATAACTCACATAACGTACATAACAACCTACATA
Found at i:102177469 original size:47 final size:47
Alignment explanation
Indices: 102177400--102177520 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 47
102177390 TTCGGAGAAA
*
102177400 TGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCAG
1 TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
* * *
102177447 TGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGTATCAG
1 TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
* * *
102177494 TGTGATACGTGAT-CCGTGTAAGACCAT
1 TGTGATATGTGCTACCGTATAAGACCAT
102177521 GGCTGGGCTA
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
46 12 0.18
47 54 0.82
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (47 bp):
TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
Found at i:102183846 original size:43 final size:42
Alignment explanation
Indices: 102183669--102184111 Score: 254
Period size: 43 Copynumber: 10.3 Consensus size: 42
102183659 AATCTGTAAA
* * *
102183669 TTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAGGACTCTACT
1 TTTAGCGGC-TTTTTGGGTAAAGCGCCGCTAAAGGTCTGTACT
* * * *
102183712 TTTGGCGGCATTTGTGGATAAAGCGCCGTTAAAAGGTCTGTACT
1 TTTAGCGGC-TTTTTGGGTAAAGCGCCGCT-AAAGGTCTGTACT
* * * * * **
102183756 TTTGGCGGCATTTTTGGTGT-AAGTGCCGCTATAGGTTTATAAA
1 TTTAGCGGC-TTTTTGG-GTAAAGCGCCGCTAAAGGTCTGTACT
* *
102183799 TTTAGCGGTTTTTTGGGCTAAAGCTCCGCTAAAGGTCTGTACT
1 TTTAGCGGCTTTTTGGG-TAAAGCGCCGCTAAAGGTCTGTACT
** *** * * *
102183842 TTTAGCGGCGCTTTGCAAACAAACGCCGCTAAAGGTCCGCACT
1 TTTAGCGGCTTTTTGGGTA-AAGCGCCGCTAAAGGTCTGTACT
*** ** *
102183885 TTTAGCGGCGCTTTCCCCGG-AAA-CGCCGCTAAAGGTCTACACC
1 TTTAGC-G-GCTTT-TTGGGTAAAGCGCCGCTAAAGGTCTGTACT
* * * * * *
102183928 TTTAGTGGCGTTTGTGGATAAAACGCCGCTAAAGGTCTGCACC
1 TTTAGCGGC-TTTTTGGGTAAAGCGCCGCTAAAGGTCTGTACT
*
102183971 TTTAGCGGCGTTTTTTGGGT-AA-CGCCGCTAAAGGTATGTGA-T
1 TTTAGCGGC--TTTTTGGGTAAAGCGCCGCTAAAGGTCTGT-ACT
* * * *
102184013 TTTAGTGGCGTTTGTTTGCT-AAGCGCCGCTAAAGGTCTATACT
1 TTTAGCGGC-TTT-TTGGGTAAAGCGCCGCTAAAGGTCTGTACT
* * * * *
102184056 ATTAGCGGCGTTTAT-GGTAATGCGCCGCTAAAGGTATCTACT
1 TTTAGCGGC-TTTTTGGGTAAAGCGCCGCTAAAGGTCTGTACT
*
102184098 TTTAGCGGCGTTTT
1 TTTAGCGGCTTTTT
102184112 CCGTTCAAAC
Statistics
Matches: 308, Mismatches: 75, Indels: 36
0.74 0.18 0.09
Matches are distributed among these distances:
41 12 0.04
42 75 0.24
43 171 0.56
44 45 0.15
45 5 0.02
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (42 bp):
TTTAGCGGCTTTTTGGGTAAAGCGCCGCTAAAGGTCTGTACT
Found at i:102184024 original size:85 final size:83
Alignment explanation
Indices: 102183862--102184110 Score: 227
Period size: 85 Copynumber: 2.9 Consensus size: 83
102183852 CTTTGCAAAC
* * *** * * *
102183862 AAACGCCGCTAAAGGTCCGCACTTTTAGCGGCGCTTTCCCCGGAAACGCCGCTAAAGGTCTACAC
1 AAACGCCGCTAAAGGTCTGCACCTTTAGCGGCG-TTT-TATGGTAACGCCGCTAAAGGTAT-TAC
*
102183927 CTTTAGTGGCGTTTG-TGGAT
63 TTTTAGTGGCGTTTGTTGGAT
*
102183947 AAAACGCCGCTAAAGGTCTGCACCTTTAGCGGCGTTTTTTGGGTAACGCCGCTAAAGGTATGTGA
1 -AAACGCCGCTAAAGGTCTGCACCTTTAGCGGCGTTTTAT-GGTAACGCCGCTAAAGGTAT-T-A
* *
102184012 -TTTTAGTGGCGTTTGTTTGCT
62 CTTTTAGTGGCGTTTGTTGGAT
* **
102184033 AAGCGCCGCTAAAGGTCTATA-CTATTAGCGGCG-TTTATGGTAATGCGCCGCTAAAGGTATCTA
1 AAACGCCGCTAAAGGTCTGCACCT-TTAGCGGCGTTTTATGGTAA--CGCCGCTAAAGGTAT-TA
*
102184096 CTTTTAGCGGCGTTT
62 CTTTTAGTGGCGTTT
102184111 TCCGTTCAAA
Statistics
Matches: 138, Mismatches: 18, Indels: 15
0.81 0.11 0.09
Matches are distributed among these distances:
83 5 0.04
84 7 0.05
85 91 0.66
86 35 0.25
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (83 bp):
AAACGCCGCTAAAGGTCTGCACCTTTAGCGGCGTTTTATGGTAACGCCGCTAAAGGTATTACTTT
TAGTGGCGTTTGTTGGAT
Found at i:102184125 original size:85 final size:85
Alignment explanation
Indices: 102183948--102184130 Score: 205
Period size: 85 Copynumber: 2.2 Consensus size: 85
102183938 TTTGTGGATA
* * *
102183948 AAACGCCGCTAAAGGTCTGCACCTTTAGCGGCGTTTTTTGGGTAACGCCGCTAAAGGTATGTGAT
1 AAACGCCGCTAAAGGTCTACACCTTTAGCGGCGTTTTATGGGTAACGCCGCTAAAGGTATCTGAT
* **
102184013 TTTAGTGGCGTTTGTTTGCT
66 TTTAGCGGCGTTTGTCCGCT
* *
102184033 AAGCGCCGCTAAAGGTCTATA-CTATTAGCGGCG-TTTAT-GGTAATGCGCCGCTAAAGGTATCT
1 AAACGCCGCTAAAGGTCTACACCT-TTAGCGGCGTTTTATGGGTAA--CGCCGCTAAAGGTATCT
*
102184095 -ACTTTTAGCGGCGTTT-TCCGTT
63 GA-TTTTAGCGGCGTTTGTCCGCT
102184117 CAAACGCCGCTAAA
1 -AAACGCCGCTAAA
102184131 AGTGATGACT
Statistics
Matches: 83, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
83 5 0.06
84 10 0.12
85 68 0.82
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (85 bp):
AAACGCCGCTAAAGGTCTACACCTTTAGCGGCGTTTTATGGGTAACGCCGCTAAAGGTATCTGAT
TTTAGCGGCGTTTGTCCGCT
Found at i:102185456 original size:34 final size:34
Alignment explanation
Indices: 102185402--102185479 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 34
102185392 CTTAAACTTA
102185402 AATATAATAAATAATTTTC-AAT-TCAAAATTTAAT
1 AATATAATAAATAATTTTCAAATGTC--AATTTAAT
*
102185436 AATAAAATAAA-AATTATTCAAATGTCAATTTAAT
1 AATATAATAAATAATT-TTCAAATGTCAATTTAAT
102185470 AATATAATAA
1 AATATAATAA
102185480 TTAAATAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
33 4 0.10
34 30 0.77
35 3 0.08
36 2 0.05
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.37
Consensus pattern (34 bp):
AATATAATAAATAATTTTCAAATGTCAATTTAAT
Found at i:102186944 original size:16 final size:18
Alignment explanation
Indices: 102186918--102186950 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
102186908 CTGTCACTTT
102186918 TTTTCTCTGTT-GTTCTC
1 TTTTCTCTGTTGGTTCTC
102186935 TTTTCT-TGTTGGTTCT
1 TTTTCTCTGTTGGTTCT
102186951 ATTTCTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.00, C:0.18, G:0.15, T:0.67
Consensus pattern (18 bp):
TTTTCTCTGTTGGTTCTC
Found at i:102189829 original size:18 final size:18
Alignment explanation
Indices: 102189783--102189831 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
102189773 TTAAAAAATC
* *
102189783 AATTTTTTAGAATTTTTA
1 AATTTTTTATAATTTCTA
*
102189801 AATAATTTTTATAATTTCTG
1 AAT--TTTTTATAATTTCTA
102189821 AATTTTTTATA
1 AATTTTTTATA
102189832 CTTTTAAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 11 0.42
20 15 0.58
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (18 bp):
AATTTTTTATAATTTCTA
Found at i:102189951 original size:12 final size:12
Alignment explanation
Indices: 102189920--102189967 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
102189910 ATTCCAGATG
*
102189920 TATTTTTTATTAAT
1 TATTTTTTA--AAA
102189934 TATTTTTTAAAA
1 TATTTTTTAAAA
102189946 -ACTTTTTTAAAA
1 TA-TTTTTTAAAA
102189958 TATTTTTTAA
1 TATTTTTTAA
102189968 TTTACTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
11 1 0.03
12 20 0.65
13 1 0.03
14 9 0.29
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTTTTTAAAA
Found at i:102197593 original size:32 final size:32
Alignment explanation
Indices: 102197548--102197613 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
102197538 TGACATACAC
*
102197548 AAGATTAGGTAAGCTATTTACAAATACAAAAG
1 AAGATTAGATAAGCTATTTACAAATACAAAAG
*
102197580 AAGATTAGATAAGCTATTTACAAATACGAAAG
1 AAGATTAGATAAGCTATTTACAAATACAAAAG
102197612 AA
1 AA
102197614 CTTAGGGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.52, C:0.09, G:0.15, T:0.24
Consensus pattern (32 bp):
AAGATTAGATAAGCTATTTACAAATACAAAAG
Found at i:102198660 original size:82 final size:82
Alignment explanation
Indices: 102198516--102198681 Score: 206
Period size: 82 Copynumber: 2.0 Consensus size: 82
102198506 AAGACCAAAT
* * **
102198516 TATGTTAGAAATTAAAGTACATGAATTAAATCTCAAATTTAATCATATTAGAAAGACCAAAACCA
1 TATGTTAGAAATTAAACTACAAGAATTAAATCTCAAATTTAAGAATATTAGAAAGACCAAAACCA
*
102198581 AAAACTAACCATTTTTA
66 AAAACTAACCACTTTTA
* * * * * * *
102198598 TATGTTAGAGATTAAACTATAAGGATTATATCTCAAATTTAAGAATATTAGAAGGACTAAAACTA
1 TATGTTAGAAATTAAACTACAAGAATTAAATCTCAAATTTAAGAATATTAGAAAGACCAAAACCA
* *
102198663 AAAATTAATCACTTTTA
66 AAAACTAACCACTTTTA
102198680 TA
1 TA
102198682 AAATATATAA
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
82 70 1.00
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.33
Consensus pattern (82 bp):
TATGTTAGAAATTAAACTACAAGAATTAAATCTCAAATTTAAGAATATTAGAAAGACCAAAACCA
AAAACTAACCACTTTTA
Found at i:102205285 original size:27 final size:24
Alignment explanation
Indices: 102205255--102205325 Score: 52
Period size: 27 Copynumber: 2.7 Consensus size: 24
102205245 TGATCCCTTA
* *
102205255 AAAATAATAAAAATTTTATAATCTTTT
1 AAAATAATAAAAA---TATAAACTATT
*
102205282 AAAATTATTATAAAAATATAAACTATT
1 AAAA-TAATA-AA-AATATAAACTATT
*
102205309 AAAATAATAAAATTATA
1 AAAATAATAAAAATATA
102205326 TTTTTATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
24 5 0.14
25 2 0.06
26 4 0.11
27 17 0.47
28 4 0.11
29 2 0.06
30 2 0.06
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (24 bp):
AAAATAATAAAAATATAAACTATT
Found at i:102205956 original size:21 final size:21
Alignment explanation
Indices: 102205931--102205971 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
102205921 CCAAAATATA
102205931 AAAATA-TAAAAAATTATATTT
1 AAAATAGTAAAAAATT-TATTT
*
102205952 AAAATAGTAAAATATTTATT
1 AAAATAGTAAAAAATTTATT
102205972 ATATTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
AAAATAGTAAAAAATTTATTT
Found at i:102210780 original size:21 final size:21
Alignment explanation
Indices: 102210755--102210803 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
102210745 TCATGATTCG
*
102210755 AGATTCAAAATTTATGATTTA
1 AGATTCAAAATTTAGGATTTA
* * *
102210776 TGATTTAAAGTTTAGGATTTA
1 AGATTCAAAATTTAGGATTTA
102210797 AGATTCA
1 AGATTCA
102210804 GAGGTCAAGG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.04, G:0.14, T:0.43
Consensus pattern (21 bp):
AGATTCAAAATTTAGGATTTA
Found at i:102217519 original size:12 final size:11
Alignment explanation
Indices: 102217490--102217523 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
102217480 AATTAAATCG
102217490 ATTTTTT-ATA
1 ATTTTTTAATA
102217500 ATTTTTTAATA
1 ATTTTTTAATA
102217511 ATTTATTTAATA
1 ATTT-TTTAATA
102217523 A
1 A
102217524 AAAATAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 7 0.32
11 7 0.32
12 8 0.36
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTTTTTAATA
Found at i:102221031 original size:2 final size:2
Alignment explanation
Indices: 102221024--102221053 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
102221014 TTTCAGACCC
102221024 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102221054 GCCCACATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102221680 original size:22 final size:22
Alignment explanation
Indices: 102221655--102221696 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
102221645 GATGTTTTGC
*
102221655 TGTTGTTTTCCCATTATTTTAT
1 TGTTATTTTCCCATTATTTTAT
* *
102221677 TGTTATTTTCTCATTGTTTT
1 TGTTATTTTCCCATTATTTT
102221697 GCTACTATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.10, T:0.67
Consensus pattern (22 bp):
TGTTATTTTCCCATTATTTTAT
Found at i:102224166 original size:33 final size:34
Alignment explanation
Indices: 102224123--102224198 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 34
102224113 ATTTTAACAG
*
102224123 AGTTAACATTTTTCTATAAAAATTCTTGTTTACT
1 AGTTAACATTTTTCTATAAAAATTATTGTTTACT
102224157 -GTTAACATTTTTCTATAAAAATTATTGTTTACT
1 AGTTAACATTTTTCTATAAAAATTATTGTTTACT
*
102224190 ATTTAACAT
1 AGTTAACAT
102224199 AATTAATCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
33 32 0.82
34 7 0.18
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (34 bp):
AGTTAACATTTTTCTATAAAAATTATTGTTTACT
Found at i:102225245 original size:22 final size:22
Alignment explanation
Indices: 102225194--102225250 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 22
102225184 ATAAGTTTTA
**
102225194 ATTAATA-AAAAATATTTAAAT
1 ATTAATATAAAAATATAAAAAT
*
102225215 -TGAAT-TAAAAATATAAAAAT
1 ATTAATATAAAAATATAAAAAT
102225235 ATTAATATAAAAATAT
1 ATTAATATAAAAATAT
102225251 TTATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 16 0.55
21 4 0.14
22 9 0.31
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
ATTAATATAAAAATATAAAAAT
Found at i:102225258 original size:22 final size:21
Alignment explanation
Indices: 102225194--102225258 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
102225184 ATAAGTTTTA
102225194 ATTAATA-AAAAATATTTAA-
1 ATTAATATAAAAATATTTAAT
**
102225213 ATTGAAT-TAAAAATATAAAAAT
1 ATT-AATATAAAAATAT-TTAAT
102225235 ATTAATATAAAAATATTTATAT
1 ATTAATATAAAAATATTTA-AT
102225257 AT
1 AT
102225259 ATATATTACA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
19 3 0.08
20 11 0.31
21 6 0.17
22 16 0.44
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
ATTAATATAAAAATATTTAAT
Found at i:102225265 original size:14 final size:14
Alignment explanation
Indices: 102225224--102225257 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
102225214 TTGAATTAAA
102225224 AATATAAAAATATT
1 AATATAAAAATATT
102225238 AATATAAAAATATT
1 AATATAAAAATATT
*
102225252 TATATA
1 AATATA
102225258 TATATATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AATATAAAAATATT
Found at i:102227317 original size:19 final size:19
Alignment explanation
Indices: 102227255--102227323 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
102227245 GACACTACTT
*
102227255 ATTAAGTATAATTAATAGTTAA
1 ATTAAGT-TAATTAAT--TTAG
* * *
102227277 ATTATGTTAA-TAAATCATG
1 ATTAAGTTAATTAATTTA-G
102227296 ATTAAGTTAATTAATTTAG
1 ATTAAGTTAATTAATTTAG
102227315 ATTAA-TTAA
1 ATTAAGTTAA
102227324 GGATTAATGT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
18 6 0.16
19 15 0.39
20 8 0.21
21 3 0.08
22 6 0.16
ACGTcount: A:0.46, C:0.01, G:0.09, T:0.43
Consensus pattern (19 bp):
ATTAAGTTAATTAATTTAG
Found at i:102229685 original size:21 final size:21
Alignment explanation
Indices: 102229660--102229728 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
102229650 TATAATGATT
102229660 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
102229681 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
102229701 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
102229721 ATTATTAT
1 ATTATTAT
102229729 TAGCATTATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:102230149 original size:18 final size:19
Alignment explanation
Indices: 102230108--102230150 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
102230098 GGAAGCAGGG
102230108 GAGAAAAGAGAAAGAAAAA
1 GAGAAAAGAGAAAGAAAAA
102230127 G-GAAAAGA-AAA-ATAAAA
1 GAGAAAAGAGAAAGA-AAAA
102230144 GAGAAAA
1 GAGAAAA
102230151 CTAAGAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 1 0.05
17 8 0.36
18 12 0.55
19 1 0.05
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.02
Consensus pattern (19 bp):
GAGAAAAGAGAAAGAAAAA
Found at i:102234333 original size:19 final size:19
Alignment explanation
Indices: 102234271--102234339 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
102234261 GGCACTACCT
*
102234271 ATTAAGTATAATTAATAGTTAA
1 ATTAAGT-TAATTAAT--TTAG
* * *
102234293 ATTATGTTAA-TAAATCATG
1 ATTAAGTTAATTAATTTA-G
102234312 ATTAAGTTAATTAATTTAG
1 ATTAAGTTAATTAATTTAG
102234331 ATTAA-TTAA
1 ATTAAGTTAA
102234340 AGATCAATGC
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
18 6 0.16
19 15 0.39
20 8 0.21
21 3 0.08
22 6 0.16
ACGTcount: A:0.46, C:0.01, G:0.09, T:0.43
Consensus pattern (19 bp):
ATTAAGTTAATTAATTTAG
Found at i:102237027 original size:23 final size:23
Alignment explanation
Indices: 102236979--102237023 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
102236969 AAGATTTAAA
*
102236979 TTTTAGAGTTTAACAATCTAGTG
1 TTTTAGAGTTTAACAATCTAGGG
* *
102237002 TTTTAGGGTTTAA-AATTTAGGG
1 TTTTAGAGTTTAACAATCTAGGG
102237024 GTTTGAGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.29, C:0.04, G:0.22, T:0.44
Consensus pattern (23 bp):
TTTTAGAGTTTAACAATCTAGGG
Found at i:102246525 original size:5 final size:5
Alignment explanation
Indices: 102246515--102246545 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
102246505 TTTGAAGTTG
*
102246515 GGGAA GGGAA GGGAA GGGAA CGGAA GGGAA G
1 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA G
102246546 AAAAAAGAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.39, C:0.03, G:0.58, T:0.00
Consensus pattern (5 bp):
GGGAA
Found at i:102247990 original size:109 final size:109
Alignment explanation
Indices: 102247799--102248020 Score: 390
Period size: 109 Copynumber: 2.0 Consensus size: 109
102247789 ATCATGAGAA
* * * * *
102247799 AAGGTGAAATTGGATAACCAGTCCTTGAGGATTCGACCTTACTGCCCTATATTTCAATTTACTAT
1 AAGGTGAAATTGAATAACCAATCCCTAAGGATTCGACCTTACTACCCTATATTTCAATTTACTAT
*
102247864 TATTTTGTCATAGAAATTTGTATTTGGTGGTTTCAATGCCCATC
66 TATTTTGTCATAGAAATTTGTATTTAGTGGTTTCAATGCCCATC
102247908 AAGGTGAAATTGAATAACCAATCCCTAAGGATTCGACCTTACTACCCTATATTTCAATTTACTAT
1 AAGGTGAAATTGAATAACCAATCCCTAAGGATTCGACCTTACTACCCTATATTTCAATTTACTAT
102247973 TATTTTGTCATAGAAATTTGTATTTAGTGGTTTCAATGCCCATC
66 TATTTTGTCATAGAAATTTGTATTTAGTGGTTTCAATGCCCATC
102248017 AAGG
1 AAGG
102248021 AGCCTAGTGG
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
109 107 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (109 bp):
AAGGTGAAATTGAATAACCAATCCCTAAGGATTCGACCTTACTACCCTATATTTCAATTTACTAT
TATTTTGTCATAGAAATTTGTATTTAGTGGTTTCAATGCCCATC
Found at i:102250246 original size:28 final size:28
Alignment explanation
Indices: 102250215--102250271 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
102250205 TAAGAGACAG
102250215 TAATAAAGGTTTATGATCATATTTCAAT
1 TAATAAAGGTTTATGATCATATTTCAAT
102250243 TAATAAAGGTTTATGATCATATTTCAAT
1 TAATAAAGGTTTATGATCATATTTCAAT
102250271 T
1 T
102250272 TAGGGAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.44
Consensus pattern (28 bp):
TAATAAAGGTTTATGATCATATTTCAAT
Found at i:102257562 original size:50 final size:50
Alignment explanation
Indices: 102257487--102257663 Score: 275
Period size: 50 Copynumber: 3.5 Consensus size: 50
102257477 CCATGGCAAC
102257487 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
102257537 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
102257587 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
102257637 CAAGTGAAAAGTGGTAGTTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
102257664 CTGATCAGTG
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
50 93 0.79
51 24 0.21
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:102257677 original size:31 final size:31
Alignment explanation
Indices: 102257639--102257811 Score: 256
Period size: 31 Copynumber: 5.6 Consensus size: 31
102257629 GCAAATGACA
*
102257639 AGTGAAAAGTGGTAGTTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
102257670 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
102257701 AGTGAAAAGTGGTAGCTTCTGCTACCTGATA
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
102257732 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* ** *
102257763 AGTGAAAAATGGTAGCACCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
102257794 AGTGAATAGTGGTAGCTT
1 AGTGAAAAGTGGTAGCTT
102257812 TGGGTACAAG
Statistics
Matches: 130, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 130 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:102257913 original size:47 final size:46
Alignment explanation
Indices: 102257843--102258056 Score: 202
Period size: 47 Copynumber: 4.7 Consensus size: 46
102257833 AAGTGATTTC
* * *
102257843 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATA
* * ** *
102257889 CTGTATAAGACCATATCTGGGATATGGCATCAGTAAGATATGTGATT
1 C-GTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATA
* * *
102257936 CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTA
1 CGTATAAGACCATAGCTGGGATATGGCATCG--GTGTGATATGTGA-TA
* * * *
102257985 CGTGTAAGACCATAGCTGGGCTATGGCATC-G-AT-ATATG-AATA
1 CGTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATA
* * *
102258027 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATAGCTGGGATATGGCATC
102258057 ATTATGTGAA
Statistics
Matches: 146, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
42 31 0.21
43 1 0.01
44 5 0.03
45 1 0.01
46 27 0.18
47 40 0.27
48 10 0.07
49 31 0.21
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATA
Found at i:102257998 original size:49 final size:48
Alignment explanation
Indices: 102257847--102258100 Score: 220
Period size: 42 Copynumber: 5.6 Consensus size: 48
102257837 GATTTCCGTA
* * * * * * *
102257847 TAAGACCATATCTGGGATATGGCATCG--GTGTGATATATGCTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTC-GTG
* * *
102257894 TAAGACCATATCTGGGATATGGCATC-AGTA--AGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGATATGTGATTCGTG
102257940 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT-CGTG
*
102257989 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
102258031 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA-A---GA-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGATATGTGATTCGTG
* **
102258073 TAAGACCATAGTTGAACTATGGCATCGA
1 TAAGACCATAGCTGGGCTATGGCATCGA
102258101 GAAAACGAAG
Statistics
Matches: 183, Mismatches: 14, Indels: 24
0.83 0.06 0.11
Matches are distributed among these distances:
41 1 0.01
42 64 0.35
43 1 0.01
44 1 0.01
45 1 0.01
46 29 0.16
47 36 0.20
48 12 0.07
49 38 0.21
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
Found at i:102259676 original size:38 final size:40
Alignment explanation
Indices: 102259625--102259706 Score: 107
Period size: 38 Copynumber: 2.1 Consensus size: 40
102259615 TTTAAACTCA
*
102259625 GATATAATACCAGCACTA-GGCCTGCGGG-ATTTAA-CCCG
1 GATATAATACCAGCA-TATAGCCTGCGGGTATTTAAGCCCG
* *
102259663 GATATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATACCAGCATATAGCCTGCGGGTATTTAAGCCCG
102259703 GATA
1 GATA
102259707 CACATCAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 2 0.05
38 23 0.61
39 5 0.13
40 8 0.21
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (40 bp):
GATATAATACCAGCATATAGCCTGCGGGTATTTAAGCCCG
Found at i:102260063 original size:26 final size:26
Alignment explanation
Indices: 102260027--102260078 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
102260017 ATACGGCATA
102260027 GTTTATTCATTGTAACACTCATTTAG
1 GTTTATTCATTGTAACACTCATTTAG
*
102260053 GTTTATTCATTGTAATACTCATTTAG
1 GTTTATTCATTGTAACACTCATTTAG
102260079 TGCATCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.13, G:0.12, T:0.48
Consensus pattern (26 bp):
GTTTATTCATTGTAACACTCATTTAG
Found at i:102265074 original size:11 final size:12
Alignment explanation
Indices: 102265044--102265076 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
102265034 ATTAATTTGT
102265044 GTATTATTTTAA
1 GTATTATTTTAA
*
102265056 GAATTATTTT-A
1 GTATTATTTTAA
102265067 GTATTATTTT
1 GTATTATTTT
102265077 TATTTGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (12 bp):
GTATTATTTTAA
Found at i:102265092 original size:21 final size:21
Alignment explanation
Indices: 102265062--102265117 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
102265052 TTAAGAATTA
*
102265062 TTTTAGTATTATTTTTAT-TT
1 TTTTAATATTATTTTTATGTT
*
102265082 GTTTTAATATTTGTTTTTATGTT
1 -TTTTAATA-TTATTTTTATGTT
102265105 TTTTAATA-TATTT
1 TTTTAATATTATTT
102265118 GATTTATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 4 0.13
21 7 0.23
22 17 0.57
23 2 0.07
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.71
Consensus pattern (21 bp):
TTTTAATATTATTTTTATGTT
Found at i:102267605 original size:47 final size:47
Alignment explanation
Indices: 102267533--102267695 Score: 159
Period size: 47 Copynumber: 3.4 Consensus size: 47
102267523 TGGTTGGACC
* * *
102267533 ATGGCAACA-TGTGATACGTGATTTCTGTATAAGACCATAGCTGGGCT
1 ATGGCATCAGTGTGATATGTG-TTTCTGTGTAAGACCATAGCTGGGCT
* ** * * *
102267580 ATGGTATTGGTGTGATATGTGTTTCTATGTAAGACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGTGTTTCTGTGTAAGACCATAGCTGGGCT
* * * *
102267627 ATGGCATCAGTGTGATATATG-ATCCGTGTAAGACCATGGCTGGGCT
1 ATGGCATCAGTGTGATATGTGTTTCTGTGTAAGACCATAGCTGGGCT
*
102267673 ATGGCTTCAGTGTGTGATATGTG
1 ATGGCATCA--GTGTGATATGTG
102267696 ACTATGTACA
Statistics
Matches: 92, Mismatches: 21, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
46 27 0.29
47 44 0.48
48 21 0.23
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (47 bp):
ATGGCATCAGTGTGATATGTGTTTCTGTGTAAGACCATAGCTGGGCT
Found at i:102267676 original size:46 final size:47
Alignment explanation
Indices: 102267562--102267694 Score: 144
Period size: 46 Copynumber: 2.9 Consensus size: 47
102267552 GATTTCTGTA
* ** * * *
102267562 TAAGACCATAGCTGGGCTATGGTATTGGTGTGATATGTGTTTCTATG
1 TAAGACCATAGCTGGGCTATGGCATCAGTGTGATATATGTATCCATG
* * *
102267609 TAAGACCATATCTGGGATATGGCATCAGTGTGATATATG-ATCCGTG
1 TAAGACCATAGCTGGGCTATGGCATCAGTGTGATATATGTATCCATG
* *
102267655 TAAGACCATGGCTGGGCTATGGCTTCAGTGTG-TGATATGT
1 TAAGACCATAGCTGGGCTATGGCATCAGTGTGAT-ATATGT
102267695 GACTATGTAC
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
45 1 0.01
46 37 0.52
47 33 0.46
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCAGTGTGATATATGTATCCATG
Found at i:102270989 original size:20 final size:20
Alignment explanation
Indices: 102270964--102271002 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
102270954 GATGTTTCCA
102270964 AAGTCAACAATAAAAATGCC
1 AAGTCAACAATAAAAATGCC
* *
102270984 AAGTCAATAATAAAGATGC
1 AAGTCAACAATAAAAATGC
102271003 AAACCTGCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.15, G:0.13, T:0.18
Consensus pattern (20 bp):
AAGTCAACAATAAAAATGCC
Found at i:102280064 original size:21 final size:21
Alignment explanation
Indices: 102280038--102280079 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
102280028 CAATCAATTA
*
102280038 CAAAAAGCATCGATACCTTTT
1 CAAAAAGCATCGATACATTTT
* *
102280059 CAAAAAGTATTGATACATTTT
1 CAAAAAGCATCGATACATTTT
102280080 ACCATATATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (21 bp):
CAAAAAGCATCGATACATTTT
Found at i:102287062 original size:195 final size:196
Alignment explanation
Indices: 102286716--102287095 Score: 575
Period size: 195 Copynumber: 1.9 Consensus size: 196
102286706 AAAGTGCAAG
* * *
102286716 CACATTCCATTGTCATTTCAAGTGGTTTCAATCCAACGCAATTTGACCTATAATAATTAGTAATA
1 CACATTCCATTGTCATCTCAAGTGGTTTCAATCCAACACAACTTGACCTATAATAATTAGTAATA
* * *
102286781 TAAGATATCCTTCCAAGAAATCATGTCAAGATACATTTAGTATGTGTTATCTCTCCATCCCTTGA
66 TAAGATATCCTTCCAAGAAATCACGTCAAGATACATTTAGTATGTGTTACCTCTCCATCCCTAGA
**
102286846 GCACAAGTAAGCTTAAAGTGAATTAAACACAACCACAAGAATGTC-TTTTATACAAAAAACACAA
131 GCACAAGTAAGCTTAAAGTGAACCAAACACAACCACAAGAATGTCTTTTTATACAAAAAACACAA
102286910 A
196 A
* *
102286911 CACATTCCATTTTCATCTCAAGTGGTTTCAATCCGACACAACTTGACCTATAATAATTAGTAATA
1 CACATTCCATTGTCATCTCAAGTGGTTTCAATCCAACACAACTTGACCTATAATAATTAGTAATA
* * * * *
102286976 TAAGATATCCTTCCAAGAAATTACGTCATGGTGCATTTAGTATGTGTTCCCTCTCCATCCCTAGA
66 TAAGATATCCTTCCAAGAAATCACGTCAAGATACATTTAGTATGTGTTACCTCTCCATCCCTAGA
* * *
102287041 GCACAAAG-AAGTTTTAAGTGAACCAAACTCAACCACAAGAATGTCTTTTTATACA
131 GCAC-AAGTAAGCTTAAAGTGAACCAAACACAACCACAAGAATGTCTTTTTATACA
102287096 GAAAGTCCAA
Statistics
Matches: 165, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
195 153 0.93
196 12 0.07
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (196 bp):
CACATTCCATTGTCATCTCAAGTGGTTTCAATCCAACACAACTTGACCTATAATAATTAGTAATA
TAAGATATCCTTCCAAGAAATCACGTCAAGATACATTTAGTATGTGTTACCTCTCCATCCCTAGA
GCACAAGTAAGCTTAAAGTGAACCAAACACAACCACAAGAATGTCTTTTTATACAAAAAACACAA
A
Found at i:102289351 original size:10 final size:11
Alignment explanation
Indices: 102289328--102289361 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
102289318 GTAATTGATT
*
102289328 AATTTTTAAAA
1 AATTATTAAAA
*
102289339 AAATATTAAAA
1 AATTATTAAAA
102289350 AATTATTAAAA
1 AATTATTAAAA
102289361 A
1 A
102289362 CACTTAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AATTATTAAAA
Found at i:102294264 original size:39 final size:37
Alignment explanation
Indices: 102294197--102294289 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
102294187 ACCAGAATGG
* *
102294197 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
102294236 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
102294273 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
102294290 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:102294653 original size:3 final size:3
Alignment explanation
Indices: 102294645--102294692 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
102294635 ATTCCCACTC
* * * *
102294645 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
102294693 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:102294693 original size:18 final size:18
Alignment explanation
Indices: 102294646--102294694 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
102294636 TTCCCACTCA
*
102294646 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
102294664 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
102294682 TAATATTAATACT
1 TAATAATAATACT
102294695 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:102294694 original size:12 final size:12
Alignment explanation
Indices: 102294645--102294692 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
102294635 ATTCCCACTC
*
102294645 ATAATAATAATA
1 ATAATACTAATA
102294657 ATAATACTAATA
1 ATAATACTAATA
102294669 ATAATACTAATA
1 ATAATACTAATA
* *
102294681 CTAATATTAATA
1 ATAATACTAATA
102294693 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:102296051 original size:23 final size:23
Alignment explanation
Indices: 102296001--102296060 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
102295991 TTATATATAA
102296001 TAATAATATAATATAATATACTTATT
1 TAATAA-ATAA-AT-ATATACTTATT
* * *
102296027 TATTAAATAAATATATATTTTTT
1 TAATAAATAAATATATACTTATT
*
102296050 TAATCAATAAA
1 TAATAAATAAA
102296061 ATCTTTGATA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 18 0.62
24 2 0.07
25 4 0.14
26 5 0.17
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (23 bp):
TAATAAATAAATATATACTTATT
Found at i:102300989 original size:21 final size:21
Alignment explanation
Indices: 102300947--102300989 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
102300937 TTCAGTATAC
*
102300947 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
102300968 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
102300989 A
1 A
102300990 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:102306171 original size:23 final size:23
Alignment explanation
Indices: 102306136--102306180 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
102306126 TATCAAAGAT
*
102306136 TTTATTGATTAAAAAAATATATA
1 TTTATTGAATAAAAAAATATATA
* * *
102306159 TTTATTTAATAAATAAGTATAT
1 TTTATTGAATAAAAAAATATAT
102306181 TATATTATAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (23 bp):
TTTATTGAATAAAAAAATATATA
Found at i:102306271 original size:31 final size:30
Alignment explanation
Indices: 102306236--102306296 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
102306226 GAAACAGAAT
*
102306236 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
102306267 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
102306297 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:102307525 original size:18 final size:18
Alignment explanation
Indices: 102307502--102307550 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
102307492 ATGTGAGGTA
*
102307502 AGTATTAATATTAGTATT
1 AGTATTATTATTAGTATT
102307520 AGTATTATTATTAGTATT
1 AGTATTATTATTAGTATT
*
102307538 ATTATTATTATTA
1 AGTATTATTATTA
102307551 TTATGAGTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (18 bp):
AGTATTATTATTAGTATT
Done.