Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 33 of 325
Found at i:12440497 original size:43 final size:44
Alignment explanation
Indices: 12440431--12440520 Score: 119
Period size: 43 Copynumber: 2.0 Consensus size: 44
12440421 TATGGTTTAG
* * *
12440431 GGTTCAATGGTACGTAGAATATATTTTAAGTTTATGGTTTAGGCC
1 GGTTCAATGGTAC-TAGAATATATATTAAGTTAATGGTATAGGCC
* *
12440476 GGTTCAATGGTA-TAGTATATATATTAAGTTAATGGTATGGGCC
1 GGTTCAATGGTACTAGAATATATATTAAGTTAATGGTATAGGCC
12440519 GG
1 GG
12440521 GTTTGTTATC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 28 0.70
45 12 0.30
ACGTcount: A:0.28, C:0.08, G:0.27, T:0.38
Consensus pattern (44 bp):
GGTTCAATGGTACTAGAATATATATTAAGTTAATGGTATAGGCC
Found at i:12441369 original size:7 final size:7
Alignment explanation
Indices: 12441359--12441408 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
12441349 ATTATTTACC
*
12441359 TAAATTT
1 TAAATAT
12441366 TAAATAT
1 TAAATAT
12441373 TAAATAT
1 TAAATAT
12441380 TAAATATT
1 TAAATA-T
*
12441388 TAAATAA
1 TAAATAT
*
12441395 TAATTAT
1 TAAATAT
*
12441402 TCAATAT
1 TAAATAT
12441409 AATTTAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
7 29 0.81
8 7 0.19
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (7 bp):
TAAATAT
Found at i:12441389 original size:22 final size:22
Alignment explanation
Indices: 12441359--12441408 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
12441349 ATTATTTACC
*
12441359 TAAAT-TTTAAATATTAAATAT
1 TAAATATTTAAATAATAAATAT
*
12441380 TAAATATTTAAATAATAATTAT
1 TAAATATTTAAATAATAAATAT
*
12441402 TCAATAT
1 TAAATAT
12441409 AATTTAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
TAAATATTTAAATAATAAATAT
Found at i:12445903 original size:23 final size:23
Alignment explanation
Indices: 12445873--12445922 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
12445863 AACATTAATC
12445873 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
12445896 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
12445919 AAAT
1 AAAT
12445923 AAACTTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGTATGAATTGCAGCCCTTT
Found at i:12446619 original size:9 final size:9
Alignment explanation
Indices: 12446596--12446722 Score: 119
Period size: 9 Copynumber: 13.6 Consensus size: 9
12446586 ATTGATCATT
*
12446596 ACTTAAATA
1 ACTTACATA
*
12446605 AATTACATA
1 ACTTACATA
12446614 ACTTACATA
1 ACTTACATA
* *
12446623 ACTCATATA
1 ACTTACATA
12446632 ACTTACATA
1 ACTTACATA
* *
12446641 ATTTACAAACA
1 ACTTAC--ATA
12446652 ACTTACATA
1 ACTTACATA
*
12446661 ACTCACATA
1 ACTTACATA
12446670 ACTTACATA
1 ACTTACATA
*
12446679 ATTTACATA
1 ACTTACATA
*
12446688 ACTCACATA
1 ACTTACATA
*
12446697 ACGTACATAACA
1 ACTTACAT---A
12446709 ACTTACATA
1 ACTTACATA
12446718 ACTTA
1 ACTTA
12446723 ACTAATACAT
Statistics
Matches: 94, Mismatches: 19, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
9 79 0.84
11 7 0.07
12 8 0.09
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:12446660 original size:38 final size:38
Alignment explanation
Indices: 12446613--12446685 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
12446603 TAAATTACAT
*
12446613 AACTTACATAACTCATATAACTTACATAATTTACAAAC
1 AACTTACATAACTCACATAACTTACATAATTTACAAAC
12446651 AACTTACATAACTCACATAACTTACATAATTTACA
1 AACTTACATAACTCACATAACTTACATAATTTACA
12446686 TAACTCACAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.32
Consensus pattern (38 bp):
AACTTACATAACTCACATAACTTACATAATTTACAAAC
Found at i:12452760 original size:43 final size:43
Alignment explanation
Indices: 12452713--12452802 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
12452703 TCTGCCAAAA
* *
12452713 TTAGCGGCG-TTTGT-AGAAAAAGCGGCGCTAAAAGCCTTGACCT
1 TTAGCGGCGCTTT-TCACAAAAA-CGCCGCTAAAAGCCTTGACCT
* *
12452756 TTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
1 TTAGCGGCGCTTTTCACAAAAACGCCGCTAAAAGCCTTGACCT
12452799 TTAG
1 TTAG
12452803 AAGCCTTGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 34 0.83
44 7 0.17
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (43 bp):
TTAGCGGCGCTTTTCACAAAAACGCCGCTAAAAGCCTTGACCT
Found at i:12452808 original size:16 final size:16
Alignment explanation
Indices: 12452787--12452818 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
12452777 ACGCCGCTAA
12452787 AAGCCTTGACCTTTAG
1 AAGCCTTGACCTTTAG
*
12452803 AAGCCTTGACTTTTAG
1 AAGCCTTGACCTTTAG
12452819 CGGCGTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGCCTTGACCTTTAG
Found at i:12453636 original size:23 final size:24
Alignment explanation
Indices: 12453602--12453652 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
12453592 ATCTTTTATC
* *
12453602 ATAATT-ATTTAAAGTCTATTTTA
1 ATAATTAATTAAAAATCTATTTTA
12453625 ATAATTAATTAAAAAATCTATTTTA
1 ATAATTAATT-AAAAATCTATTTTA
12453650 ATA
1 ATA
12453653 TCTATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 6 0.25
24 3 0.12
25 15 0.62
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (24 bp):
ATAATTAATTAAAAATCTATTTTA
Found at i:12455440 original size:25 final size:26
Alignment explanation
Indices: 12455398--12455449 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12455388 TTAAACTTTG
* *
12455398 ATTTATAAAATTTTAAAAATATTAAA
1 ATTTATAAAATTTAAAAAATAGTAAA
12455424 ATTTAT-AAATTTAAAAAATAGTAAA
1 ATTTATAAAATTTAAAAAATAGTAAA
12455449 A
1 A
12455450 ATTTGTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (26 bp):
ATTTATAAAATTTAAAAAATAGTAAA
Found at i:12455450 original size:26 final size:26
Alignment explanation
Indices: 12455398--12455453 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
12455388 TTAAACTTTG
* *
12455398 ATTTATAAAATTTTAAAAATATTAAA
1 ATTTATAAAATTTAAAAAATATAAAA
12455424 ATTTAT-AAATTTAAAAAATAGTAAAA
1 ATTTATAAAATTTAAAAAATA-TAAAA
12455450 ATTT
1 ATTT
12455454 GTTTTTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 13 0.48
26 14 0.52
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (26 bp):
ATTTATAAAATTTAAAAAATATAAAA
Found at i:12459960 original size:7 final size:7
Alignment explanation
Indices: 12459948--12459974 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
12459938 CGACATTGAC
12459948 TTTAAAA
1 TTTAAAA
12459955 TTTAAAA
1 TTTAAAA
12459962 TTTAAAA
1 TTTAAAA
12459969 TTTAAA
1 TTTAAA
12459975 CACGTGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
TTTAAAA
Found at i:12460978 original size:18 final size:18
Alignment explanation
Indices: 12460957--12460991 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12460947 GTAATATTCA
*
12460957 TTTATTCAGTATCAGTCG
1 TTTATTCAGTAACAGTCG
*
12460975 TTTATTCTGTAACAGTC
1 TTTATTCAGTAACAGTC
12460992 AATTATCCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (18 bp):
TTTATTCAGTAACAGTCG
Found at i:12464035 original size:47 final size:47
Alignment explanation
Indices: 12463928--12464118 Score: 186
Period size: 47 Copynumber: 3.9 Consensus size: 47
12463918 AATGTGATTT
* * * *
12463928 CCGTATAAGACCATAGCTGGGCTATGGCTTCGGACAAATGTGATATGTGCTT
1 CCGTATAAGACCATATCTGGGATATGGCATCGG-----TGTGATATGTGCTA
*
12463980 CCGTATAAGACCATATCCGGGATATGGCATCGGTGTGATATGTGCTA
1 CCGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTA
* * * *
12464027 CTGTATAAGACCATATTTGGGATATGGCATCAGTGTGATATGTGAT-
1 CCGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTA
* ** * *
12464073 CCGTGTAAGACCATGGCTGGGTTATGGCCTCGGTATGTGATATGTG
1 CCGTATAAGACCATATCTGGGATATGGCATCGG--TGTGATATGTG
12464119 ACTATGTGCA
Statistics
Matches: 119, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 25 0.21
47 54 0.45
48 11 0.09
52 29 0.24
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (47 bp):
CCGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTA
Found at i:12464151 original size:95 final size:93
Alignment explanation
Indices: 12463966--12464136 Score: 211
Period size: 93 Copynumber: 1.8 Consensus size: 93
12463956 TTCGGACAAA
* *
12463966 TGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGGTGTGATATGTGCTACTGT
1 TGTGATATGTGCATCCGTATAAGACCATAGCCGGGATATGGCATCGGTGTGATATGTGCTACTGT
*
12464031 ATAAGACCATATTTGGGATATGGCATCAG
66 ACAAGACCATATTT-GGATATGGCATCAG
* * * * *
12464060 TGTGATATGTG-ATCCGTGTAAGACCATGGCTGGGTTATGGCCTCGGTATGTGATATGTGACTA-
1 TGTGATATGTGCATCCGTATAAGACCATAGCCGGGATATGGCATCGG--TGTGATATGTG-CTAC
*
12464123 TGTGCAAGACCATA
63 TGTACAAGACCATA
12464137 GTTTTACTAT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
93 28 0.43
94 11 0.17
95 23 0.35
96 3 0.05
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.32
Consensus pattern (93 bp):
TGTGATATGTGCATCCGTATAAGACCATAGCCGGGATATGGCATCGGTGTGATATGTGCTACTGT
ACAAGACCATATTTGGATATGGCATCAG
Found at i:12472950 original size:3 final size:3
Alignment explanation
Indices: 12472942--12472976 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
12472932 TGATTGGTAC
12472942 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
12472977 GACAACAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:12475906 original size:47 final size:47
Alignment explanation
Indices: 12475797--12475907 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 47
12475787 CCGGGATAAG
* * *
12475797 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * * *
12475844 CATAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
12475891 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
12475908 ACTCAATGTC
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
46 1 0.02
47 49 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:12477426 original size:24 final size:25
Alignment explanation
Indices: 12477370--12477420 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
12477360 ATATTTTATT
*
12477370 AAAT-AAA-AAATTTAAAATATAAA
1 AAATCAAATAAATTTAAAACATAAA
12477393 AAATCAAATAAATTTAAAAACATAAA
1 AAATCAAATAAATTT-AAAACATAAA
12477419 AA
1 AA
12477421 CAAATATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 3 0.12
25 6 0.25
26 11 0.46
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.24
Consensus pattern (25 bp):
AAATCAAATAAATTTAAAACATAAA
Found at i:12480308 original size:2 final size:2
Alignment explanation
Indices: 12480301--12480333 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
12480291 TGTTTATTTG
12480301 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12480334 ACATGTTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12481919 original size:21 final size:22
Alignment explanation
Indices: 12481879--12481920 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
12481869 AATTTCATAA
*
12481879 ATTTTAAATAAATCACAATATT
1 ATTTTAAATAAATCAAAATATT
*
12481901 ATTTTAAA-AAATTAAAATAT
1 ATTTTAAATAAATCAAAATAT
12481921 AATCTTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTTTAAATAAATCAAAATATT
Found at i:12484354 original size:24 final size:23
Alignment explanation
Indices: 12484311--12484359 Score: 80
Period size: 24 Copynumber: 2.1 Consensus size: 23
12484301 TATATAAGTT
12484311 TTAATTTTATATAATTATACATA
1 TTAATTTTATATAATTATACATA
*
12484334 TTAATTTTAATTTAATTATACATA
1 TTAATTTT-ATATAATTATACATA
12484358 TT
1 TT
12484360 TAAAGAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 8 0.33
24 16 0.67
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (23 bp):
TTAATTTTATATAATTATACATA
Found at i:12504433 original size:137 final size:137
Alignment explanation
Indices: 12504270--12504537 Score: 475
Period size: 138 Copynumber: 2.0 Consensus size: 137
12504260 AGATGACACA
12504270 TTAGCTTTTAATTATTTTTAAATTTAAAAAAA-TTAAAAAAAAGTTTGTAATTTTTAAATAAATT
1 TTAGCTTTTAATTATTTTTAAATTTAAAAAAATTTAAAAAAAAGTTTGTAATTTTTAAATAAATT
*
12504334 TAATTCTTTCTCATTTTTAAAAATAGTTTTCATATTTTTTGAATTTTTAAATTTTAAAAAATTAA
66 TAATTCTTTCTCATTTTTAAAAATAGTTTTCATATTTTCTGAATTTTTAAATTTTAAAAAATTAA
12504399 TCCCACG
131 TCCCACG
* *
12504406 TTAGCTTTTTATTATTTTTTAAATTTAAAAAAATTTTAAAAAAAGTTTGTAATTTTTAAATAAAT
1 TTAGCTTTTAATTA-TTTTTAAATTTAAAAAAATTTAAAAAAAAGTTTGTAATTTTTAAATAAAT
* *
12504471 TTAATTCTTTTTCATTTTTTAAAATAGTTTTCATATTTTCTGAATTTTTAAATTTTAAAAAATTA
65 TTAATTCTTTCTCATTTTTAAAAATAGTTTTCATATTTTCTGAATTTTTAAATTTTAAAAAATTA
12504536 AT
130 AT
12504538 TGCTTACGTG
Statistics
Matches: 125, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
136 13 0.10
137 18 0.14
138 94 0.75
ACGTcount: A:0.40, C:0.05, G:0.04, T:0.51
Consensus pattern (137 bp):
TTAGCTTTTAATTATTTTTAAATTTAAAAAAATTTAAAAAAAAGTTTGTAATTTTTAAATAAATT
TAATTCTTTCTCATTTTTAAAAATAGTTTTCATATTTTCTGAATTTTTAAATTTTAAAAAATTAA
TCCCACG
Found at i:12505839 original size:14 final size:14
Alignment explanation
Indices: 12505820--12505847 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
12505810 AAATCCTACT
12505820 TAATATGATCGACA
1 TAATATGATCGACA
12505834 TAATATGATCGACA
1 TAATATGATCGACA
12505848 GATGAGATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
TAATATGATCGACA
Found at i:12521369 original size:13 final size:13
Alignment explanation
Indices: 12521297--12521368 Score: 101
Period size: 13 Copynumber: 5.5 Consensus size: 13
12521287 TTTAGCAATA
12521297 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
*
12521310 CTTTTGAAAAATG
1 CTTTTGAAAAGTG
12521323 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
*
12521336 C-TGTGCAAAAGTG
1 CTTTTG-AAAAGTG
*
12521349 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
12521362 CTTTTGA
1 CTTTTGA
12521369 GTGTTTAGCA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
12 3 0.06
13 46 0.88
14 3 0.06
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.38
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:12525846 original size:21 final size:21
Alignment explanation
Indices: 12525803--12525847 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
12525793 TATTTACATA
*
12525803 TTTAAATATAAATATATGATT
1 TTTAAATATAAATATAAGATT
*
12525824 TTTAAATATGAAATA-AAGTTT
1 TTTAAATAT-AAATATAAGATT
12525845 TTT
1 TTT
12525848 TAAGAGGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (21 bp):
TTTAAATATAAATATAAGATT
Found at i:12527114 original size:31 final size:31
Alignment explanation
Indices: 12527061--12527123 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
12527051 AACAAAAAAG
* *
12527061 CCATTTCCCCTCCCCCATTTTCTTTCTTTTT
1 CCATTTCCCCTCCCCCATTTTCTCTCTCTTT
* *
12527092 CCATTT-CCTTCCCCCTTCTTTCTCTCTCTTT
1 CCATTTCCCCTCCCCCAT-TTTCTCTCTCTTT
12527123 C
1 C
12527124 TCTCTCAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 9 0.33
31 18 0.67
ACGTcount: A:0.05, C:0.44, G:0.00, T:0.51
Consensus pattern (31 bp):
CCATTTCCCCTCCCCCATTTTCTCTCTCTTT
Found at i:12534356 original size:63 final size:63
Alignment explanation
Indices: 12534257--12534382 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
12534247 TTCAAACGAC
12534257 TTGATCAATTATAGAAAAGATGATAGCCATTCCTATGAGATTCTTAACAGCCATGAACAGCAT
1 TTGATCAATTATAGAAAAGATGATAGCCATTCCTATGAGATTCTTAACAGCCATGAACAGCAT
*
12534320 TTGATCAATTATAGAAAAGATGATAGCCATTTCTATGAGATTCTTAACAGCCATGAACAGCAT
1 TTGATCAATTATAGAAAAGATGATAGCCATTCCTATGAGATTCTTAACAGCCATGAACAGCAT
12534383 ACCTTCATCC
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (63 bp):
TTGATCAATTATAGAAAAGATGATAGCCATTCCTATGAGATTCTTAACAGCCATGAACAGCAT
Found at i:12549448 original size:18 final size:21
Alignment explanation
Indices: 12549425--12549464 Score: 59
Period size: 18 Copynumber: 2.0 Consensus size: 21
12549415 TTTTTTATAA
12549425 AATTAATT-CA-AAA-AATTT
1 AATTAATTACATAAATAATTT
12549443 AATTAATTACATAAATAATTT
1 AATTAATTACATAAATAATTT
12549464 A
1 A
12549465 TTTTTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
19 2 0.11
20 3 0.16
21 6 0.32
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
AATTAATTACATAAATAATTT
Found at i:12549872 original size:17 final size:18
Alignment explanation
Indices: 12549829--12549874 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
12549819 TTAACATTTT
12549829 TATATTTAAAATTTTTAAA
1 TATA-TTAAAATTTTTAAA
* *
12549848 TTTTTTAAAA-TTTTAAA
1 TATATTAAAATTTTTAAA
12549865 TATATTAAAA
1 TATATTAAAA
12549875 ATATTTTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 15 0.65
18 6 0.26
19 2 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TATATTAAAATTTTTAAA
Found at i:12549934 original size:17 final size:17
Alignment explanation
Indices: 12549908--12549953 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
12549898 AAATAGATTA
*
12549908 AATATA-TTAAAATTTT
1 AATATATTTAAAATTTC
*
12549924 AATTTATTTAAAATTTC
1 AATATATTTAAAATTTC
12549941 AATATATTTAAAA
1 AATATATTTAAAA
12549954 AATATATTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 5 0.19
17 21 0.81
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
AATATATTTAAAATTTC
Found at i:12550074 original size:79 final size:78
Alignment explanation
Indices: 12549954--12550103 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 78
12549944 ATATTTAAAA
* * **
12549954 AATATATTGAATATATTAAAATTTTAAAATGTTAAAGAAAATGT-TGAGTATAACTAATTTTAAA
1 AATATATTAAATATATTAAAATTTTAAAATATTAAAGAAAAT-TAAAAGTATAACTAATTTTAAA
*
12550018 TTTTTAATATACTT
65 ATTTTAATATACTT
*
12550032 AATATATTTAAATATATTAAAATTTTGAACATATTAAA-AAAATTAAAAGTATAACTAATTTTAA
1 AATATA-TTAAATATATTAAAATTTT-AAAATATTAAAGAAAATTAAAAGTATAACTAATTTTAA
12550096 AATTTTAA
64 AATTTTAA
12550104 AATATTTTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
78 7 0.11
79 47 0.75
80 9 0.14
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (78 bp):
AATATATTAAATATATTAAAATTTTAAAATATTAAAGAAAATTAAAAGTATAACTAATTTTAAAA
TTTTAATATACTT
Found at i:12551327 original size:21 final size:22
Alignment explanation
Indices: 12551281--12551328 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
12551271 AAAATTAACC
12551281 TAAAA-AATTTAATTAATTACA
1 TAAAATAATTTAATTAATTACA
**
12551302 T-AAATAATTTAATTTTTTA-A
1 TAAAATAATTTAATTAATTACA
12551322 TAAAATA
1 TAAAATA
12551329 TGTAAATGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
TAAAATAATTTAATTAATTACA
Found at i:12551696 original size:17 final size:17
Alignment explanation
Indices: 12551670--12551740 Score: 63
Period size: 17 Copynumber: 4.0 Consensus size: 17
12551660 ATACATTTTC
*
12551670 TTTAACATATTTAAAAT
1 TTTAATATATTTAAAAT
*
12551687 TTTAATATATTTAAATTTT
1 TTTAATATATTTAAA--AT
*
12551706 TTTAAGT-TTTTTAAAAT
1 TTTAA-TATATTTAAAAT
*
12551723 TTTAAATATATTAAAAAT
1 TTT-AATATATTTAAAAT
12551741 ATTTTTTCTC
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
17 19 0.44
18 10 0.23
19 13 0.30
20 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (17 bp):
TTTAATATATTTAAAAT
Found at i:12551938 original size:17 final size:18
Alignment explanation
Indices: 12551822--12551936 Score: 83
Period size: 17 Copynumber: 6.1 Consensus size: 18
12551812 ATTTAGTTTT
*
12551822 TTTAAATATATTAAATATA
1 TTTAAA-ATTTTAAATATA
12551841 -TTAAAATTTTAAATTAGTTA
1 TTTAAAATTTTAAA-TA--TA
*
12551861 TACTTAAAATTTTTTAATATA
1 T--TTAAAA-TTTTAAATATA
12551882 TTTAAAATTTT-AATATA
1 TTTAAAATTTTAAATATA
** * *
12551899 TTTAATTTTTTTAAGT-TT
1 TTTAA-AATTTTAAATATA
12551917 TTTAAAATTTTAAATATA
1 TTTAAAATTTTAAATATA
12551935 TT
1 TT
12551937 AAGAAAAATT
Statistics
Matches: 76, Mismatches: 10, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
17 25 0.33
18 24 0.32
19 8 0.11
20 2 0.03
21 3 0.04
23 8 0.11
24 6 0.08
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.55
Consensus pattern (18 bp):
TTTAAAATTTTAAATATA
Found at i:12552030 original size:19 final size:20
Alignment explanation
Indices: 12551998--12552036 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
12551988 AATTTTAAAA
*
12551998 TTAATTATACTTAACATTTT
1 TTAATTATACTTAAAATTTT
*
12552018 TTAA-TATATTTAAAATTTT
1 TTAATTATACTTAAAATTTT
12552037 AAAAAAACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (20 bp):
TTAATTATACTTAAAATTTT
Found at i:12554640 original size:6 final size:6
Alignment explanation
Indices: 12554626--12554661 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
12554616 ATTCTTTTCA
*
12554626 AAGTTG AAGTAG AAGTAG AAGTAG AAGTAG AAGTAG
1 AAGTAG AAGTAG AAGTAG AAGTAG AAGTAG AAGTAG
12554662 GACAACGTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.47, C:0.00, G:0.33, T:0.19
Consensus pattern (6 bp):
AAGTAG
Found at i:12555536 original size:23 final size:21
Alignment explanation
Indices: 12555499--12555584 Score: 72
Period size: 22 Copynumber: 4.0 Consensus size: 21
12555489 ATTATTTTTT
*
12555499 TATTGAAATT-TAT-TTTAAA
1 TATTAAAATTATATATTTAAA
12555518 TATATAAAATTATATATTTAAA
1 TAT-TAAAATTATATATTTAAA
*
12555540 T-TTATAATGATTATAT-TTTAAT
1 TATTA-AA--ATTATATATTTAAA
*
12555562 TATTATAGATTATATATTTAAA
1 TATTA-AAATTATATATTTAAA
12555584 T
1 T
12555585 TAAATAATTG
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
19 3 0.05
20 8 0.15
21 13 0.24
22 19 0.35
23 12 0.22
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (21 bp):
TATTAAAATTATATATTTAAA
Found at i:12555556 original size:21 final size:24
Alignment explanation
Indices: 12555512--12555585 Score: 88
Period size: 22 Copynumber: 3.3 Consensus size: 24
12555502 TGAAATTTAT
*
12555512 TTTAAATATATAA-A-ATTATATA
1 TTTAAATTTATAATAGATTATATA
12555534 TTTAAATTTATAAT-GATTATAT-
1 TTTAAATTTATAATAGATTATATA
*
12555556 TTT-AA-TTATTATAGATTATATA
1 TTTAAATTTATAATAGATTATATA
12555578 TTTAAATT
1 TTTAAATT
12555586 AAATAATTGA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
20 6 0.14
21 10 0.23
22 18 0.41
23 9 0.20
24 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (24 bp):
TTTAAATTTATAATAGATTATATA
Found at i:12558094 original size:20 final size:20
Alignment explanation
Indices: 12558062--12558099 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
12558052 TGTTTCACAT
12558062 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
12558082 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
12558100 ACTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:12558798 original size:39 final size:38
Alignment explanation
Indices: 12558731--12558824 Score: 91
Period size: 39 Copynumber: 2.4 Consensus size: 38
12558721 ACCAATATGG
*
12558731 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGCAA-AGTTGA
* * * *
12558770 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAAAGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGCAAAGTTGA
* * *
12558808 TACGCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
12558825 AATCTATCCG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
38 18 0.40
39 24 0.53
40 3 0.07
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGCAAAGTTGA
Found at i:12560149 original size:15 final size:14
Alignment explanation
Indices: 12560131--12560161 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
12560121 TTAATTTATT
12560131 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
12560146 TAATAATAATCTAA
1 TAATAATAATCTAA
12560160 TA
1 TA
12560162 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:12560172 original size:21 final size:20
Alignment explanation
Indices: 12560148--12560216 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
12560138 AATGCTAATA
12560148 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
12560169 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
12560188 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
12560209 ATAATAAT
1 ATAATAAT
12560217 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:12569954 original size:2 final size:2
Alignment explanation
Indices: 12569947--12569971 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12569937 AATATAAAAA
12569947 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
12569972 GTCTGGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:12572032 original size:18 final size:18
Alignment explanation
Indices: 12572009--12572047 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
12571999 TATTGTTTTC
* *
12572009 TTAAAAAAATGAAAAATA
1 TTAAAAAAATAAAAAAAA
*
12572027 TTAAAATAATAAAAAAAA
1 TTAAAAAAATAAAAAAAA
12572045 TTA
1 TTA
12572048 TTTTTATTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (18 bp):
TTAAAAAAATAAAAAAAA
Found at i:12573496 original size:6 final size:7
Alignment explanation
Indices: 12573477--12573502 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
12573467 TTTAACCCTT
12573477 TTAAAAA
1 TTAAAAA
12573484 TTAAAAA
1 TTAAAAA
12573491 TTAAAAA
1 TTAAAAA
12573498 TTAAA
1 TTAAA
12573503 TTGAAATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TTAAAAA
Found at i:12576037 original size:2 final size:2
Alignment explanation
Indices: 12576030--12576083 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
12576020 TCTTAATTAA
12576030 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
12576072 CT CT CT CT CT CT
1 CT CT CT CT CT CT
12576084 AGATTATAGG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:12597623 original size:12 final size:12
Alignment explanation
Indices: 12597606--12597630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12597596 TTTTTATGGT
12597606 ATTCTTATTTTC
1 ATTCTTATTTTC
12597618 ATTCTTATTTTC
1 ATTCTTATTTTC
12597630 A
1 A
12597631 AACATAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (12 bp):
ATTCTTATTTTC
Found at i:12604424 original size:13 final size:13
Alignment explanation
Indices: 12604408--12604473 Score: 64
Period size: 12 Copynumber: 5.1 Consensus size: 13
12604398 TAAACTAAAA
12604408 TTTTTTAAAATA-
1 TTTTTTAAAATAT
12604420 TTTTTTAAAGATAT
1 TTTTTTAAA-ATAT
* * *
12604434 TTTTTCACAACA-
1 TTTTTTAAAATAT
12604446 TTTTTTAAAGATAT
1 TTTTTTAAA-ATAT
*
12604460 TTTTTAAAAATAT
1 TTTTTTAAAATAT
12604473 T
1 T
12604474 GTCAAACTAG
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
12 16 0.37
13 12 0.28
14 15 0.35
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (13 bp):
TTTTTTAAAATAT
Found at i:12604437 original size:26 final size:26
Alignment explanation
Indices: 12604407--12604473 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
12604397 TTAAACTAAA
12604407 ATTTTTT-AAAATATTTTTTAAAGAT
1 ATTTTTTAAAAATATTTTTTAAAGAT
* * *
12604432 ATTTTTTCACAACATTTTTTAAAGAT
1 ATTTTTTAAAAATATTTTTTAAAGAT
12604458 ATTTTTTAAAAATATT
1 ATTTTTTAAAAATATT
12604474 GTCAAACTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
25 7 0.19
26 29 0.81
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (26 bp):
ATTTTTTAAAAATATTTTTTAAAGAT
Found at i:12606116 original size:19 final size:18
Alignment explanation
Indices: 12606072--12606129 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
12606062 AAGAGGACCA
*
12606072 TAATTATATAAGTTATA-
1 TAATTATATAAATTATAT
*
12606089 AAATATATATAAAATTATAT
1 TAAT-TATAT-AAATTATAT
*
12606109 TAATTATAGTATATTATAT
1 TAATTATA-TAAATTATAT
12606128 TA
1 TA
12606130 TATATTATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
17 3 0.09
18 5 0.15
19 21 0.64
20 4 0.12
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
TAATTATATAAATTATAT
Found at i:12606121 original size:5 final size:5
Alignment explanation
Indices: 12606102--12606144 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
12606092 TATATATAAA
*
12606102 ATTAT ATTA- ATTAT AGTAT ATTAT ATTATAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT A-T-TAT ATTAT ATTAT AT
12606145 AAATAAGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 4 0.12
5 23 0.70
6 2 0.06
7 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (5 bp):
ATTAT
Found at i:12606133 original size:17 final size:19
Alignment explanation
Indices: 12606102--12606144 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 19
12606092 TATATATAAA
12606102 ATTATATTAATTATAGTAT
1 ATTATATTAATTATAGTAT
*
12606121 ATTATATT-A-TATATTAT
1 ATTATATTAATTATAGTAT
12606138 ATTATAT
1 ATTATAT
12606145 AAATAAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 14 0.61
18 1 0.04
19 8 0.35
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
ATTATATTAATTATAGTAT
Found at i:12606135 original size:12 final size:12
Alignment explanation
Indices: 12606118--12606145 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
12606108 TTAATTATAG
12606118 TATATTATATTA
1 TATATTATATTA
12606130 TATATTATATTA
1 TATATTATATTA
12606142 TATA
1 TATA
12606146 AATAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TATATTATATTA
Found at i:12607482 original size:18 final size:19
Alignment explanation
Indices: 12607459--12607497 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
12607449 ATATATAGAT
12607459 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
12607477 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
12607496 AT
1 AT
12607498 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:12607847 original size:39 final size:39
Alignment explanation
Indices: 12607737--12607871 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
12607727 GACCTCGAGT
* * * *
12607737 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
12607778 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
12607816 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
12607855 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
12607872 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:12608015 original size:18 final size:19
Alignment explanation
Indices: 12607994--12608034 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
12607984 AATGAAATGA
12607994 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
12608012 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
12608031 GAAA
1 GAAA
12608035 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:12622901 original size:48 final size:48
Alignment explanation
Indices: 12622840--12622933 Score: 179
Period size: 48 Copynumber: 2.0 Consensus size: 48
12622830 CTTTATGGAA
12622840 AAAATATAAAAACTAATTACATAATTTAACTTAAAATTTTTATTTATG
1 AAAATATAAAAACTAATTACATAATTTAACTTAAAATTTTTATTTATG
*
12622888 AAAATATAAAAACTAATTATATAATTTAACTTAAAATTTTTATTTA
1 AAAATATAAAAACTAATTACATAATTTAACTTAAAATTTTTATTTA
12622934 AAATAATAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (48 bp):
AAAATATAAAAACTAATTACATAATTTAACTTAAAATTTTTATTTATG
Found at i:12622922 original size:25 final size:25
Alignment explanation
Indices: 12622846--12622923 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
12622836 GGAAAAAATA
*
12622846 TAAAAACTAATTACATAATTTAACT
1 TAAAAACTAATTATATAATTTAACT
** * ** *
12622871 T-AAAA-TTTTTAT-TTATGAAAAT
1 TAAAAACTAATTATATAATTTAACT
12622893 ATAAAAACTAATTATATAATTTAACT
1 -TAAAAACTAATTATATAATTTAACT
12622919 TAAAA
1 TAAAA
12622924 TTTTTATTTA
Statistics
Matches: 36, Mismatches: 13, Indels: 8
0.63 0.23 0.14
Matches are distributed among these distances:
22 6 0.17
23 5 0.14
24 8 0.22
25 11 0.31
26 6 0.17
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (25 bp):
TAAAAACTAATTATATAATTTAACT
Found at i:12623050 original size:23 final size:22
Alignment explanation
Indices: 12623011--12623056 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
12623001 TAAATGTTAC
12623011 AACATAATAATATAAATATAAT
1 AACATAATAATATAAATATAAT
12623033 AACATAAATAAT-TAAAATATAAT
1 AACAT-AATAATAT-AAATATAAT
12623056 A
1 A
12623057 TTTTAAGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (22 bp):
AACATAATAATATAAATATAAT
Found at i:12623052 original size:29 final size:29
Alignment explanation
Indices: 12623019--12623078 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
12623009 ACAACATAAT
12623019 AATATAAATATAATAA-CATAAATAATTAA
1 AATAT-AATATAATAAGCATAAATAATTAA
**
12623048 AATATAATATTTTAAGCATAAATAATTAA
1 AATATAATATAATAAGCATAAATAATTAA
12623077 AA
1 AA
12623079 GAAACGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 8 0.29
29 20 0.71
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (29 bp):
AATATAATATAATAAGCATAAATAATTAA
Found at i:12633180 original size:294 final size:294
Alignment explanation
Indices: 12632651--12633240 Score: 1162
Period size: 294 Copynumber: 2.0 Consensus size: 294
12632641 GTCACATAAA
12632651 AACATTAATACTAGCAAACCCCTTCATGAGCTTAGTGTTTAGGATGTTATTTTCGGAACTTAGGC
1 AACATTAATACTAGCAAACCCCTTCATGAGCTTAGTGTTTAGGATGTTATTTTCGGAACTTAGGC
12632716 TATGTTTTCCCTTTCTTTAGTCACTTCATGGAGTTAAATATCTGTCAATTTCTATAGCATGTGCA
66 TATGTTTTCCCTTTCTTTAGTCACTTCATGGAGTTAAATATCTGTCAATTTCTATAGCATGTGCA
12632781 AGGTTTTAGTTCTACTTTGTTTTAAGTGAGTCAATATCATTCAAACTTTGGGTTTCTTTTGAAGA
131 AGGTTTTAGTTCTACTTTGTTTTAAGTGAGTCAATATCATTCAAACTTTGGGTTTCTTTTGAAGA
12632846 GTTCCAATGTAGAAATTTACCTTCTATTGCATCTTCATAAATAGAACAGAATATTTTCACTCATT
196 GTTCCAATGTAGAAATTTACCTTCTATTGCATCTTCATAAATAGAACAGAATATTTTCACTCATT
12632911 GTAGTGGCACCGTAAATGAAATTTCTTCTTTTGC
261 GTAGTGGCACCGTAAATGAAATTTCTTCTTTTGC
12632945 AACATTAATACTAGCAAACCCCTTCATGAGCTTAGTGTTTAGGATGTTATTTTCGGAACTTAGGC
1 AACATTAATACTAGCAAACCCCTTCATGAGCTTAGTGTTTAGGATGTTATTTTCGGAACTTAGGC
*
12633010 TATGTTTTCCCTTTCTTTAGTCACTTCATGGAGTTAAATGTCTGTCAATTTCTATAGCATGTGCA
66 TATGTTTTCCCTTTCTTTAGTCACTTCATGGAGTTAAATATCTGTCAATTTCTATAGCATGTGCA
12633075 AGGTTTTAGTTCTACTTTGTTTTAAGTGAGTCAATATCATTCAAACTTTGGGTTTCTTTTGAAGA
131 AGGTTTTAGTTCTACTTTGTTTTAAGTGAGTCAATATCATTCAAACTTTGGGTTTCTTTTGAAGA
12633140 GTTCCAATGTAGAAATTTACCTTCTATTGCATCTTCATAAATAGAACAGAATATTTTCACTCATT
196 GTTCCAATGTAGAAATTTACCTTCTATTGCATCTTCATAAATAGAACAGAATATTTTCACTCATT
*
12633205 GTAGTGGCACCGTAAATTAAATTTCTTCTTTTGC
261 GTAGTGGCACCGTAAATGAAATTTCTTCTTTTGC
12633239 AA
1 AA
12633241 TATATGTTTT
Statistics
Matches: 294, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
294 294 1.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.41
Consensus pattern (294 bp):
AACATTAATACTAGCAAACCCCTTCATGAGCTTAGTGTTTAGGATGTTATTTTCGGAACTTAGGC
TATGTTTTCCCTTTCTTTAGTCACTTCATGGAGTTAAATATCTGTCAATTTCTATAGCATGTGCA
AGGTTTTAGTTCTACTTTGTTTTAAGTGAGTCAATATCATTCAAACTTTGGGTTTCTTTTGAAGA
GTTCCAATGTAGAAATTTACCTTCTATTGCATCTTCATAAATAGAACAGAATATTTTCACTCATT
GTAGTGGCACCGTAAATGAAATTTCTTCTTTTGC
Found at i:12644423 original size:5 final size:5
Alignment explanation
Indices: 12644413--12644447 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
12644403 TTAAAGTTTC
12644413 ATCAT ATCAT ATCAT ATCAT ATCAT AT-AT AT-AT AT
1 ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT AT
12644448 ATCTTATGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 8 0.27
5 22 0.73
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (5 bp):
ATCAT
Found at i:12645223 original size:21 final size:21
Alignment explanation
Indices: 12645197--12645244 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
12645187 GTATGAACAT
12645197 ATTGAACCGGCTAAAAAATCA
1 ATTGAACCGGCTAAAAAATCA
*
12645218 ATTGAACTGGCTAAAAAATCA
1 ATTGAACCGGCTAAAAAATCA
*
12645239 GTTGAA
1 ATTGAA
12645245 TCGAGATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.23
Consensus pattern (21 bp):
ATTGAACCGGCTAAAAAATCA
Found at i:12652652 original size:24 final size:24
Alignment explanation
Indices: 12652625--12652672 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
12652615 ATTATAATTA
*
12652625 TATATTAAAATTAAT-ATTACAATG
1 TATA-TAAAATTAATAATTAAAATG
*
12652649 TATATCAAATTAATAATTAAAATG
1 TATATAAAATTAATAATTAAAATG
12652673 AACTCATGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (24 bp):
TATATAAAATTAATAATTAAAATG
Found at i:12657352 original size:15 final size:15
Alignment explanation
Indices: 12657332--12657362 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
12657322 AGGGTTCATT
*
12657332 AATTTAATAAATTTA
1 AATTTAAAAAATTTA
12657347 AATTTAAAAAATTTA
1 AATTTAAAAAATTTA
12657362 A
1 A
12657363 TAGTATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AATTTAAAAAATTTA
Found at i:12658340 original size:29 final size:30
Alignment explanation
Indices: 12658294--12658355 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
12658284 TCAATTTTAT
*
12658294 TTTATGATTTATATATATTTTACAT-ATTA
1 TTTATGATTTATACATATTTTACATAATTA
*
12658323 TTTATG-TTTAATACATATTTTTCATAATTA
1 TTTATGATTT-ATACATATTTTACATAATTA
12658353 TTT
1 TTT
12658356 TAAACAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 3 0.10
29 19 0.66
30 7 0.24
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (30 bp):
TTTATGATTTATACATATTTTACATAATTA
Found at i:12661644 original size:22 final size:24
Alignment explanation
Indices: 12661607--12661654 Score: 82
Period size: 22 Copynumber: 2.1 Consensus size: 24
12661597 AACATAGATG
12661607 AAATGATTAATTTAGCTATGCAGA
1 AAATGATTAATTTAGCTATGCAGA
12661631 AAAT-ATT-ATTTAGCTATGCAGA
1 AAATGATTAATTTAGCTATGCAGA
12661653 AA
1 AA
12661655 TTGGACAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 17 0.71
23 3 0.12
24 4 0.17
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (24 bp):
AAATGATTAATTTAGCTATGCAGA
Found at i:12674100 original size:3 final size:3
Alignment explanation
Indices: 12674092--12674303 Score: 142
Period size: 3 Copynumber: 70.7 Consensus size: 3
12674082 AGTTGTTTCT
*
12674092 TGC TGC TGC TGC TGC TGC TG- TGGC TGC TGC TGC TG- TAAC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC T-GC TGC TGC TGC TGC T-GC TGC TGC
* * * * * ** ** **
12674137 TGC TGC AGC TGT TGT TGC TGA TGA TGC AAC TGC TGC TGC AAC TGC AAC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
* * * *
12674185 TGC TGC TGT TGT TGT TGC TGC TGC TGC TGC TGC TGC TGC AAG- TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC -TGC TGC
** * * *** **
12674230 AAC TGC TGC TGT TGT TGC TGC TGC TGC TGC AAT TGC AAC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
*
12674278 TGC TGC TGC TGC TGC TGT TGC TGC TG
1 TGC TGC TGC TGC TGC TGC TGC TGC TG
12674304 GTTCATGTAA
Statistics
Matches: 161, Mismatches: 42, Indels: 12
0.75 0.20 0.06
Matches are distributed among these distances:
2 3 0.02
3 155 0.96
4 3 0.02
ACGTcount: A:0.09, C:0.26, G:0.31, T:0.34
Consensus pattern (3 bp):
TGC
Found at i:12674141 original size:36 final size:36
Alignment explanation
Indices: 12674094--12674301 Score: 171
Period size: 36 Copynumber: 5.9 Consensus size: 36
12674084 TTGTTTCTTG
*
12674094 CTGCTGCTGCTGCTGCTG-TGGCTGCTGCTGCTGTAA
1 CTGCTGCTGCTGCTGCTGCT-GCTGCTGCTGCTGCAA
* * * * *
12674130 CTGCTGCTGCTGCAGCTGTTGTTGCTGATGATGCAA
1 CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAA
** **
12674166 CTGCTGCTGCAACTGCAACTGCTGCTG-T--TG---
1 CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAA
* * *
12674196 TTGTTGCTGCTGCTGCTGCTGCTGCTGCAAG-TGCAA
1 CTGCTGCTGCTGCTGCTGCTGCTGCTGC-TGCTGCAA
* * ***
12674232 CTGCTGCTGTTGTTGCTGCTGCTGCTGCAATTGCAA
1 CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAA
*
12674268 CTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGC
1 CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
12674302 TGGTTCATGT
Statistics
Matches: 134, Mismatches: 30, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
30 21 0.16
33 4 0.03
35 2 0.01
36 106 0.79
37 1 0.01
ACGTcount: A:0.09, C:0.27, G:0.30, T:0.34
Consensus pattern (36 bp):
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAA
Found at i:12674180 original size:48 final size:48
Alignment explanation
Indices: 12674092--12674303 Score: 192
Period size: 48 Copynumber: 4.4 Consensus size: 48
12674082 AGTTGTTTCT
* * ** * **
12674092 TGCTGCTGCTGCTGCTGCTG-TGGCTGCTGCTGCTGTAACTGCTGCTGC
1 TGCTGCTGTTGTTGCTGCTGCT-GCAACTGCTGCTGCAACTGCAACTGC
* * *
12674140 TGCAGCTGTTGTTGCTGATGATGCAACTGCTGCTGCAACTGCAACTGC
1 TGCTGCTGTTGTTGCTGCTGCTGCAACTGCTGCTGCAACTGCAACTGC
* ** *
12674188 TGCTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCAAGTGCAACTGC
1 TGCTGCTGTTGTTGCTGCTGCTGCAACTGCTGCTGCAACTGCAACTGC
* * * ** ** **
12674236 TGCTGTTGTTGCTGCTGCTGCTGCAATTGCAACTGCTGCTGCTGCTGC
1 TGCTGCTGTTGTTGCTGCTGCTGCAACTGCTGCTGCAACTGCAACTGC
*
12674284 TGCTGCTGCTGTTGCTGCTG
1 TGCTGCTGTTGTTGCTGCTG
12674304 GTTCATGTAA
Statistics
Matches: 133, Mismatches: 30, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
48 132 0.99
49 1 0.01
ACGTcount: A:0.09, C:0.26, G:0.31, T:0.34
Consensus pattern (48 bp):
TGCTGCTGTTGTTGCTGCTGCTGCAACTGCTGCTGCAACTGCAACTGC
Found at i:12674802 original size:21 final size:21
Alignment explanation
Indices: 12674769--12674832 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
12674759 TCATTTTCCT
*
12674769 CTGCATTTGCTGCTGCTGCTG
1 CTGCAATTGCTGCTGCTGCTG
*
12674790 -TG--GTTGCTGCTGCTGCTG
1 CTGCAATTGCTGCTGCTGCTG
* *
12674808 TTGCAATTGCCGCTGCTGCTG
1 CTGCAATTGCTGCTGCTGCTG
12674829 CTGC
1 CTGC
12674833 TGTTGCATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 15 0.42
19 2 0.06
20 2 0.06
21 17 0.47
ACGTcount: A:0.05, C:0.28, G:0.31, T:0.36
Consensus pattern (21 bp):
CTGCAATTGCTGCTGCTGCTG
Found at i:12674810 original size:15 final size:15
Alignment explanation
Indices: 12674779--12674834 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
12674769 CTGCATTTGC
12674779 TGCTGCTGCTG-TGGT
1 TGCTGCTGCTGCT-GT
12674794 TGCTGCTGCTGCTGT
1 TGCTGCTGCTGCTGT
* *
12674809 TGCAATTGCCGCTGCTGC
1 TGC---TGCTGCTGCTGT
12674827 TGCTGCTG
1 TGCTGCTG
12674835 TTGCATCATC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
15 20 0.59
16 1 0.03
18 13 0.38
ACGTcount: A:0.04, C:0.27, G:0.34, T:0.36
Consensus pattern (15 bp):
TGCTGCTGCTGCTGT
Found at i:12674838 original size:21 final size:21
Alignment explanation
Indices: 12674777--12674838 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
12674767 CTCTGCATTT
*
12674777 GCTGCTGCTGCTG-TGGTTGCT
1 GCTGCTGCTGCTGCT-GTTGCC
* **
12674798 GCTGCTGCTGTTGCAATTGCC
1 GCTGCTGCTGCTGCTGTTGCC
12674819 GCTGCTGCTGCTGCTGTTGC
1 GCTGCTGCTGCTGCTGTTGC
12674839 ATCATCTGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.03, C:0.27, G:0.34, T:0.35
Consensus pattern (21 bp):
GCTGCTGCTGCTGCTGTTGCC
Found at i:12694488 original size:20 final size:20
Alignment explanation
Indices: 12694421--12694492 Score: 51
Period size: 20 Copynumber: 3.6 Consensus size: 20
12694411 AACTTCTAAA
*
12694421 TTTTATTCT-TTTAAAAATAT
1 TTTTATT-TATTTTAAAATAT
*
12694441 TTTGT-TATTATTTTAAAAAAT
1 TTT-TAT-TTATTTTAAAATAT
***
12694462 CAATATTTATTTTAAAATAT
1 TTTTATTTATTTTAAAATAT
12694482 TTTTA-TTATTT
1 TTTTATTTATTT
12694493 GATTATTTTC
Statistics
Matches: 39, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
19 6 0.15
20 21 0.54
21 12 0.31
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (20 bp):
TTTTATTTATTTTAAAATAT
Found at i:12694527 original size:29 final size:27
Alignment explanation
Indices: 12694465--12694528 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
12694455 AAAAAATCAA
12694465 TATTTATTTTAAAATATTTTTATTATT
1 TATTTATTTTAAAATATTTTTATTATT
* * *
12694492 TGA-TTATTTTCATAATTTTTTTCGTTATT
1 T-ATTTATTTT-AAAATATTTTT-ATTATT
12694521 TATTTATT
1 TATTTATT
12694529 GCTGATAGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 8 0.27
28 11 0.37
29 11 0.37
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (27 bp):
TATTTATTTTAAAATATTTTTATTATT
Found at i:12704118 original size:61 final size:61
Alignment explanation
Indices: 12704053--12704246 Score: 177
Period size: 61 Copynumber: 3.2 Consensus size: 61
12704043 TTATAGTATC
12704053 ATATATTATAATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATAATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * *
12704114 ATATATTTTAATTAT-AATATATTTA-ATAATAATTATGTTAA--ATT-A-TATTTTA-TAGTAT
1 ATATATTATAATT-TGAGTAAATTCATATAAGAA-TA--TTAATTATTAAGAATTTTATTA-AAT
*
12704172 C
61 T
* * **
12704173 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTACAAAGAATTTTATTAAATT
1 ATATATTATAATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
*
12704234 ATATATTTTAATT
1 ATATATTATAATT
12704247 ATAATATATT
Statistics
Matches: 99, Mismatches: 22, Indels: 24
0.68 0.15 0.17
Matches are distributed among these distances:
57 3 0.03
58 3 0.03
59 29 0.29
60 14 0.14
61 43 0.43
62 3 0.03
63 4 0.04
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (61 bp):
ATATATTATAATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:12704135 original size:16 final size:16
Alignment explanation
Indices: 12704114--12704160 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
12704104 TTATTAAATT
12704114 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
12704130 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
12704145 AT-TATGTTAAATTATA
1 ATATAT-TTTAATTATA
12704161 TTTTATAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:12704177 original size:120 final size:120
Alignment explanation
Indices: 12704020--12704277 Score: 453
Period size: 120 Copynumber: 2.1 Consensus size: 120
12704010 AGCAGTTGTC
* *
12704020 TAATATTTATGTTAAATTATCTTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAAGA
**
12704085 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTACAAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
*
12704140 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAAGA
*
12704205 ATATTGATTACAAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTACAAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
12704260 TAATAATTATGTTTAAAT
1 TAATAATTATG-TTAAAT
12704278 ATGATTAAAT
Statistics
Matches: 131, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
120 125 0.95
121 6 0.05
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAAGA
ATATTAATTACAAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
Found at i:12704255 original size:16 final size:16
Alignment explanation
Indices: 12704234--12704275 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
12704224 TTATTAAATT
*
12704234 ATATATTTTAATTATA
1 ATATATTTTAATAATA
12704250 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
12704265 AT-TATGTTTAA
1 ATATAT-TTTAA
12704276 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:12704260 original size:15 final size:15
Alignment explanation
Indices: 12704225--12704266 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
12704215 CAAAGAATTT
*
12704225 TATTAAATTAT-ATA
1 TATTTAATTATAATA
12704239 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
12704253 TATTTAATAATAAT
1 TATTTAATTATAAT
12704267 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:12704470 original size:16 final size:16
Alignment explanation
Indices: 12704450--12704513 Score: 101
Period size: 16 Copynumber: 4.0 Consensus size: 16
12704440 TACTATTACG
* *
12704450 CCTCTATTCCATTACA
1 CCTCTAATCCAATACA
*
12704466 TCTCTAATCCAATACA
1 CCTCTAATCCAATACA
12704482 CCTCTAATCCAATACA
1 CCTCTAATCCAATACA
12704498 CCTCTAATCCAATACA
1 CCTCTAATCCAATACA
12704514 GCGAACCAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.34, C:0.36, G:0.00, T:0.30
Consensus pattern (16 bp):
CCTCTAATCCAATACA
Found at i:12705452 original size:14 final size:14
Alignment explanation
Indices: 12705433--12705464 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
12705423 TCCAATCACC
12705433 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
12705447 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
12705461 GGGC
1 GGGC
12705465 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:12710563 original size:14 final size:14
Alignment explanation
Indices: 12710544--12710575 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
12710534 TCCAATCACC
12710544 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
12710558 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
12710572 GGGC
1 GGGC
12710576 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:12711352 original size:39 final size:39
Alignment explanation
Indices: 12711297--12711383 Score: 151
Period size: 39 Copynumber: 2.3 Consensus size: 39
12711287 ATGGAAGTAG
*
12711297 TTTTT-AA-CACCGTTCAATTTCGACTAACAAACATTAT
1 TTTTTGAACCACCATTCAATTTCGACTAACAAACATTAT
12711334 TTTTTGAACCACCATTCAATTTCGACTAACAAACATTAT
1 TTTTTGAACCACCATTCAATTTCGACTAACAAACATTAT
12711373 TTTTTGAACCA
1 TTTTTGAACCA
12711384 TAATTACATT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
37 5 0.11
38 2 0.04
39 40 0.85
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (39 bp):
TTTTTGAACCACCATTCAATTTCGACTAACAAACATTAT
Found at i:12711370 original size:21 final size:21
Alignment explanation
Indices: 12711309--12711370 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 21
12711299 TTTAACACCG
12711309 TTCAATTTCGACTAACAAACA
1 TTCAATTTCGACTAACAAACA
** * *
12711330 TT--ATTT--TTTGAACCACCA
1 TTCAATTTCGACT-AACAAACA
12711348 TTCAATTTCGACTAACAAACA
1 TTCAATTTCGACTAACAAACA
12711369 TT
1 TT
12711371 ATTTTTTGAA
Statistics
Matches: 28, Mismatches: 8, Indels: 10
0.61 0.17 0.22
Matches are distributed among these distances:
17 1 0.04
18 8 0.29
19 4 0.14
20 4 0.14
21 10 0.36
22 1 0.04
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (21 bp):
TTCAATTTCGACTAACAAACA
Found at i:12720668 original size:11 final size:11
Alignment explanation
Indices: 12720654--12720698 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
12720644 AGATAAATAT
12720654 TATTTTATTAA
1 TATTTTATTAA
*
12720665 TATTTTAATAATA
1 TATTTT-ATTA-A
*
12720678 TATTTTATTAT
1 TATTTTATTAA
12720689 TATTTTATTA
1 TATTTTATTA
12720699 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:12720681 original size:24 final size:24
Alignment explanation
Indices: 12720649--12720704 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
12720639 TAATTAGATA
12720649 AATATTATTTTATTAATATTTTAAT
1 AATA-TATTTTATTAATATTTTAAT
* *
12720674 AATATATTTTATTATTATTTTATT
1 AATATATTTTATTAATATTTTAAT
*
12720698 AGTATAT
1 AATATAT
12720705 AAAGAAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AATATATTTTATTAATATTTTAAT
Found at i:12722887 original size:46 final size:46
Alignment explanation
Indices: 12722834--12723010 Score: 230
Period size: 46 Copynumber: 3.8 Consensus size: 46
12722824 GCTCTCTGAT
**
12722834 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
*
12722880 ATGAAATGAATAAGATCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* *
12722926 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAA-GATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG-TGAC
** * * * * *
12722972 AAAAAATGAGTAAGACCATAGTTGAGAGACACTATGGCA
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
12723011 TCATGTCAAA
Statistics
Matches: 116, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
45 1 0.01
46 115 0.99
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
Found at i:12723116 original size:13 final size:13
Alignment explanation
Indices: 12723098--12723154 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
12723088 ATCAGATGAC
12723098 AAATGGTTATATG
1 AAATGGTTATATG
* *
12723111 AAATGGTTGTGTG
1 AAATGGTTATATG
* *
12723124 AAATGTTTATAAG
1 AAATGGTTATATG
* *
12723137 AACTGGTCATATGG
1 AAATGGTTATAT-G
12723151 AAAT
1 AAAT
12723155 ATATGTGCAA
Statistics
Matches: 32, Mismatches: 11, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
13 28 0.88
14 4 0.12
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.35
Consensus pattern (13 bp):
AAATGGTTATATG
Found at i:12728563 original size:37 final size:37
Alignment explanation
Indices: 12728522--12728596 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
12728512 AGACATCTCA
12728522 AGTTGCCAAGTTTTACCTTTATTAACGATCAGGAAAT
1 AGTTGCCAAGTTTTACCTTTATTAACGATCAGGAAAT
12728559 AGTTGCCAAGTTTTACCTTTATTAACGATCAGGAAAT
1 AGTTGCCAAGTTTTACCTTTATTAACGATCAGGAAAT
12728596 A
1 A
12728597 TATTAAACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (37 bp):
AGTTGCCAAGTTTTACCTTTATTAACGATCAGGAAAT
Found at i:12735367 original size:30 final size:30
Alignment explanation
Indices: 12735307--12735367 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
12735297 ATCATTTTAA
*
12735307 TTTTAATTTTAAAAATTCAATAAATTTAAT
1 TTTTAATTTTAAAAATTCAATAAATCTAAT
* **
12735337 TTTTAATATTTACAAATTTTAT-AATCTAAT
1 TTTTAAT-TTTAAAAATTCAATAAATCTAAT
12735367 T
1 T
12735368 ATAAAAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (30 bp):
TTTTAATTTTAAAAATTCAATAAATCTAAT
Found at i:12739032 original size:17 final size:17
Alignment explanation
Indices: 12739010--12739043 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
12739000 ATCCACTAAT
*
12739010 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
12739027 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
12739044 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:12743671 original size:17 final size:17
Alignment explanation
Indices: 12743649--12743682 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
12743639 ATCCACTAAT
*
12743649 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
12743666 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
12743683 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:12751356 original size:16 final size:16
Alignment explanation
Indices: 12751335--12751366 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
12751325 TAGAGGGTTT
12751335 GCCTCCATGGGAAACA
1 GCCTCCATGGGAAACA
12751351 GCCTCCATGGGAAACA
1 GCCTCCATGGGAAACA
12751367 AACACTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.31, G:0.25, T:0.12
Consensus pattern (16 bp):
GCCTCCATGGGAAACA
Found at i:12753443 original size:29 final size:28
Alignment explanation
Indices: 12753408--12753464 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
12753398 AATTTAACAA
*
12753408 AAAAATTTAATAATATTA-AAAATTAAAATT
1 AAAATTTTAA-AAT-TTATAAAA-TAAAATT
12753438 AAAATTTTAAAATTTATAAAATAAAAT
1 AAAATTTTAAAATTTATAAAATAAAAT
12753465 ATTTAAATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 9 0.36
29 7 0.28
30 9 0.36
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (28 bp):
AAAATTTTAAAATTTATAAAATAAAATT
Found at i:12753447 original size:30 final size:31
Alignment explanation
Indices: 12753408--12753480 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 31
12753398 AATTTAACAA
* *
12753408 AAAAATTTAATAATATTA-AAAATTAAA-ATT
1 AAAATTTTAA-AATATTATAAAATAAAATATT
12753438 AAAATTTTAAAAT-TTATAAAATAAAATATT
1 AAAATTTTAAAATATTATAAAATAAAATATT
*
12753468 TAAATTCTTAAAA
1 AAAATT-TTAAAA
12753481 ATAAAAGTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 3 0.08
29 11 0.30
30 17 0.46
31 6 0.16
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (31 bp):
AAAATTTTAAAATATTATAAAATAAAATATT
Found at i:12753481 original size:23 final size:21
Alignment explanation
Indices: 12753423--12753486 Score: 74
Period size: 23 Copynumber: 2.9 Consensus size: 21
12753413 TTTAATAATA
* *
12753423 TTAAAAATTAAAATTAAAATT
1 TTAAAATTTAAAAATAAAATT
12753444 TTAAAATTTATAAAATAAAATAT
1 TTAAAATTTA-AAAATAAAAT-T
*
12753467 TTAAATTCTTAAAAATAAAA
1 TTAAAAT-TTAAAAATAAAA
12753487 GTAAAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 9 0.24
22 9 0.24
23 16 0.43
24 3 0.08
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
TTAAAATTTAAAAATAAAATT
Found at i:12754442 original size:4 final size:4
Alignment explanation
Indices: 12754435--12754469 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
12754425 TGTTTTACCC
*
12754435 AATA AATA AATA AATA AATA AATA AACA AATA AAT
1 AATA AATA AATA AATA AATA AATA AATA AATA AAT
12754470 CAAAATCTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:12756938 original size:3 final size:3
Alignment explanation
Indices: 12756920--12757026 Score: 117
Period size: 3 Copynumber: 35.3 Consensus size: 3
12756910 AGGTATAAAT
* * * * * * *
12756920 ATA ATG ATA GTA ATA ATA ATA GTA GTA ATA ATA CTA ACA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
12756968 A-A GATA ATA ATA GTAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
12757014 ATA ATA ATA ATA A
1 ATA ATA ATA ATA A
12757027 AATTAACAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
2 1 0.01
3 83 0.95
4 3 0.03
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:12758529 original size:45 final size:45
Alignment explanation
Indices: 12758478--12758617 Score: 126
Period size: 44 Copynumber: 3.2 Consensus size: 45
12758468 GCAAGGTTTG
12758478 TGTCTTCGACCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTTT
1 TGTCTTCGACCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTTT
* * ** * * * * *
12758523 TGTCTTCAACCAGC-TCTA-TCACAACCGAAAG-AGGCAAGGT-TTG
1 TGTCTTCGACCTGCTTC-ACTGTCAA-TGCAGGAAGGCAAGATCTTT
* * *
12758566 TGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTT
1 TGTCTTCGACCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTTT
12758611 TGTCTTC
1 TGTCTTC
12758618 AACCAGCTCC
Statistics
Matches: 68, Mismatches: 21, Indels: 12
0.67 0.21 0.12
Matches are distributed among these distances:
43 15 0.22
44 28 0.41
45 25 0.37
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (45 bp):
TGTCTTCGACCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTTT
Found at i:12758646 original size:44 final size:44
Alignment explanation
Indices: 12758510--12758648 Score: 133
Period size: 44 Copynumber: 3.2 Consensus size: 44
12758500 CAATGCAGGA
*
12758510 AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
1 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAAG
* * * * * ** *
12758554 AGGCAAGGT-TTGTGTCTTCGATCTGCTTCGC-TGTCAA-TGCAGAA-
1 AGGCAAGATCTTTTGTCTTCAACCAGC-TC-CATCACAACCG-A-AAG
12758598 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAAG
1 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAAG
12758642 AGGCAAG
1 AGGCAAG
12758649 GTTTGTGTTT
Statistics
Matches: 70, Mismatches: 17, Indels: 16
0.68 0.17 0.16
Matches are distributed among these distances:
43 17 0.24
44 37 0.53
45 16 0.23
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (44 bp):
AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAAG
Found at i:12758696 original size:88 final size:88
Alignment explanation
Indices: 12758356--12758675 Score: 425
Period size: 88 Copynumber: 3.7 Consensus size: 88
12758346 TGTAACCTTT
* ** * * *
12758356 AACCAGCTCCAAT-GCAACCGATGGAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGCTGTTAATG
1 AACCAGCTCC-ATCACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATG
* ** *
12758418 CAGGAAGGTAAGATCTGCT-TCTTT
64 CAGGAAGGCAAGATCTTTTGTCTTC
* * *
12758442 AACCAGCTCCA-CTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGC
1 AACCAGCTCCATC-ACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
12758506 AGGAAGGCAAGATCTTTTGTCTTC
65 AGGAAGGCAAGATCTTTTGTCTTC
*
12758530 AACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
*
12758595 GAAAGGCAAGATCTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
* *
12758618 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTTTTCGATCTGCTCCGCTGT
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGT
12758676 AATCTCGGGG
Statistics
Matches: 208, Mismatches: 20, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
85 6 0.03
86 27 0.13
87 34 0.16
88 140 0.67
89 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (88 bp):
AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
GGAAGGCAAGATCTTTTGTCTTC
Found at i:12758764 original size:46 final size:46
Alignment explanation
Indices: 12758711--12759001 Score: 193
Period size: 46 Copynumber: 6.6 Consensus size: 46
12758701 CTTCAATTTG
* *
12758711 CTCCACTGTAACTTCAGGGGGATAAGATCTGCAATTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGCAATTCTTCGATCTA
* * * *
12758757 CTCCACTGTAACCTCAGAGAGATAAGACCTG--A---TGCGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGCAATTCTTCGATCTA
* * ** * **
12758798 CTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATT-TT-AATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGAT-CTGCAATTCTTCGATCTA
* * * * *
12758842 CTCCACTGTAACTTCAGGGAGATAGGAT-TACTA-TCTTTGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGCAATTCTTCGATCTA
* * * *
12758886 CTCCGCTGTAACCTCAGGGAGACAAGATCTGCAATTCTTCGGTC-A
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGCAATTCTTCGATCTA
* * *
12758931 GCTCCACTGTAA-TCTCAGGGAGATAAGACCTG--A-T-GT-GATCTT
1 -CTCCACTGTAACT-TCAGGGAGATAAGATCTGCAATTCTTCGATCTA
* *
12758973 CTCTACTGTAACTTCAGAGAGATAAGATC
1 CTCCACTGTAACTTCAGGGAGATAAGATC
12759002 CTTTAATCCG
Statistics
Matches: 193, Mismatches: 38, Indels: 33
0.73 0.14 0.12
Matches are distributed among these distances:
41 59 0.31
42 6 0.03
43 6 0.03
44 58 0.30
45 4 0.02
46 60 0.31
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (46 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCTGCAATTCTTCGATCTA
Found at i:12758979 original size:175 final size:170
Alignment explanation
Indices: 12758709--12759085 Score: 578
Period size: 175 Copynumber: 2.2 Consensus size: 170
12758699 GGCTTCAATT
* * *
12758709 TGCTCCACTGTAACTTCAGGGGGATAAGATCTGCAATTCTTCGGTCTACTCCACTGTAACCTCAG
1 TGCTCCGCTGTAACCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTACTCCACTGTAACCTCAG
12758774 AGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT
66 AGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCC-----TTTAAT
*
12758839 CCGCTCCACTGTAA-CTTCAGGGAGATAGGATTACTATCTTTGATC
126 CCGCTCCACTGTAATC-TCAAGGAGATAGGATTACTATCTTTGATC
* *
12758884 TGCTCCGCTGTAACCTCAGGGAGACAAGATCTGCAATTCTTCGGTC-AGCTCCACTGTAATCTCA
1 TGCTCCGCTGTAACCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTA-CTCCACTGTAACCTCA
* * *
12758948 GGGAGATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGC
65 GAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGC
*
12759013 TCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATC
130 TCCACTGTAATCTCAAGGAGATAGGATTACTATCTTTGATC
*
12759054 TGCTCCGCTGTAATCTCAGGGAGATAAGATCT
1 TGCTCCGCTGTAACCTCAGGGAGATAAGATCT
12759086 CTGGCTTCAA
Statistics
Matches: 188, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
170 77 0.41
171 1 0.01
174 1 0.01
175 109 0.58
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (170 bp):
TGCTCCGCTGTAACCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTACTCCACTGTAACCTCAG
AGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCT
CCACTGTAATCTCAAGGAGATAGGATTACTATCTTTGATC
Found at i:12759099 original size:44 final size:42
Alignment explanation
Indices: 12758658--12759104 Score: 232
Period size: 44 Copynumber: 10.3 Consensus size: 42
12758648 GGTTTGTGTT
* *
12758658 TTCGATCTGCTCCGCTGTAATCTCGGGGAGATAAGATCTCTGGC
1 TTCGATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCT-GC
* * * *
12758702 TTCAATTTGCTCCACTGTAACTTCAGGGGGATAAGATCTGCAATTC
1 TTCGATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCT-C--TGC
* * * *
12758748 TTCGGTCTACTCCACTGTAACCTCAGAGAGATAAGA-C-CTGA
1 TTCGATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTGC
* * * * * **
12758789 TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAT
1 TTCGATCTGCTCCACTGTAAC-TCAGGGAGATAAGAT-CTCTGC
** * * *
12758833 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-TACTATC
1 TTCGATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCT-CT-GC
* * * *
12758877 TTTGATCTGCTCCGCTGTAACCTCAGGGAGACAAGATCTGCAATTC
1 TTCGATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT-C--TGC
* * *
12758923 TTCGGTCAGCTCCACTGTAATCTCAGGGAGATAAGA-C-CTGA
1 TTCGATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTGC
* * *
12758964 TGT-GATCTTCTCTACTGTAACTTCAGAGAGATAAGATC-CT--
1 T-TCGATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTCTGC
* * * * * *
12759004 TT-AATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-TACTATC
1 TTCGATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT-CT-GC
* *
12759047 TTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
1 TTCGATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCT-GC
*
12759091 TTCAATCTGCTCCA
1 TTCGATCTGCTCCA
12759105 ATGCAACCGA
Statistics
Matches: 308, Mismatches: 69, Indels: 52
0.72 0.16 0.12
Matches are distributed among these distances:
39 25 0.08
40 6 0.02
41 60 0.19
42 5 0.02
43 7 0.02
44 134 0.44
45 7 0.02
46 61 0.20
47 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (42 bp):
TTCGATCTGCTCCACTGTAACTCAGGGAGATAAGATCTCTGC
Found at i:12760524 original size:1 final size:1
Alignment explanation
Indices: 12760520--12760546 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
12760510 TCTTCTTCTC
12760520 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
12760547 GAATCAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:12761417 original size:7 final size:8
Alignment explanation
Indices: 12761392--12761421 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
12761382 CTATTTTGAC
12761392 TTTGATTTT
1 TTTGA-TTT
12761401 TTTGATTT
1 TTTGATTT
12761409 TTTGATTT
1 TTTGATTT
12761417 TTTGA
1 TTTGA
12761422 ATTCATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (8 bp):
TTTGATTT
Found at i:12766331 original size:3 final size:3
Alignment explanation
Indices: 12766313--12766413 Score: 105
Period size: 3 Copynumber: 33.3 Consensus size: 3
12766303 AGGTATAAAT
* * * * * * *
12766313 ATA ATG ATA GTA ATA ATA ATA GTA GTA ATA ATA CTA ACA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
12766361 A-A GATA ATA ATA GTAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
12766407 ATA ATA A
1 ATA ATA A
12766414 AATTAACAAA
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
2 1 0.01
3 77 0.95
4 3 0.04
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:12779693 original size:21 final size:21
Alignment explanation
Indices: 12779667--12779707 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
12779657 AAAGGGAACG
12779667 AATATGATATTTTTCACTAAA
1 AATATGATATTTTTCACTAAA
12779688 AATATGATATTTTTCACTAA
1 AATATGATATTTTTCACTAA
12779708 CCATAAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (21 bp):
AATATGATATTTTTCACTAAA
Found at i:12780514 original size:18 final size:19
Alignment explanation
Indices: 12780470--12780516 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
12780460 TCATACCTAA
*
12780470 ATATAA-ATATTTTAAAAT
1 ATATAACATATGTTAAAAT
* *
12780488 TTATTACATATGTT-AAAT
1 ATATAACATATGTTAAAAT
12780506 ATATAACATAT
1 ATATAACATAT
12780517 ATATTATTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (19 bp):
ATATAACATATGTTAAAAT
Found at i:12793388 original size:20 final size:21
Alignment explanation
Indices: 12793345--12793388 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
12793335 TTAGTCCCTT
12793345 TAGGTTGACTCCAGCTATGCCC
1 TAGGTTGACTCCA-CTATGCCC
12793367 TAGGTTGACATCCA-TA-GCCC
1 TAGGTTGAC-TCCACTATGCCC
12793387 TA
1 TA
12793389 TCACGACACT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.29
21 2 0.10
22 9 0.43
23 4 0.19
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (21 bp):
TAGGTTGACTCCACTATGCCC
Found at i:12804090 original size:17 final size:19
Alignment explanation
Indices: 12804068--12804105 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
12804058 AATTTTTATC
12804068 TTAAATT-ATC-AAAAATA
1 TTAAATTAATCAAAAAATA
12804085 TTAAATTAATCAAAAAATA
1 TTAAATTAATCAAAAAATA
12804104 TT
1 TT
12804106 TTTCAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 3 0.16
19 9 0.47
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TTAAATTAATCAAAAAATA
Found at i:12807222 original size:2 final size:2
Alignment explanation
Indices: 12807215--12807265 Score: 68
Period size: 2 Copynumber: 25.5 Consensus size: 2
12807205 GGGTATCCTT
* *
12807215 TA TA TA TA TA TA TA TA TA TA TCC TT TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA
12807258 TA T- TA TA T
1 TA TA TA TA T
12807266 CTGGTCATGA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
1 1 0.02
2 42 0.95
3 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:12807236 original size:25 final size:25
Alignment explanation
Indices: 12807208--12807260 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
12807198 ATATGATGGG
12807208 TATCCTTTATATATATATATATATA
1 TATCCTTTATATATATATATATATA
12807233 TATCCTTTATATATATATATATATA
1 TATCCTTTATATATATATATATATA
12807258 TAT
1 TAT
12807261 TATATCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.53
Consensus pattern (25 bp):
TATCCTTTATATATATATATATATA
Found at i:12808316 original size:25 final size:28
Alignment explanation
Indices: 12808284--12808335 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 28
12808274 AAAATTAGAA
12808284 AAAATTAAATTT-AT-TAA-ATATTTAC
1 AAAATTAAATTTGATATAACATATTTAC
12808309 AAAATTAAATTTGATATAACATATTTA
1 AAAATTAAATTTGATATAACATATTTA
12808336 AACTATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.50
26 2 0.08
27 3 0.12
28 7 0.29
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (28 bp):
AAAATTAAATTTGATATAACATATTTAC
Found at i:12808370 original size:20 final size:19
Alignment explanation
Indices: 12808345--12808409 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 19
12808335 AAACTATTTA
12808345 AAAATTTATAAAAACGTATT
1 AAAATTTATAAAAA-GTATT
*
12808365 AAAATTCTATAAAAA-TCATG
1 AAAATT-TATAAAAAGT-ATT
*
12808385 AAAA-TTATACAAAGGTATT
1 AAAATTTATA-AAAAGTATT
12808404 AAAATT
1 AAAATT
12808410 GATATACACT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
18 4 0.11
19 11 0.30
20 14 0.38
21 8 0.22
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (19 bp):
AAAATTTATAAAAAGTATT
Found at i:12808928 original size:21 final size:19
Alignment explanation
Indices: 12808880--12808937 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 19
12808870 AGTTGATATC
12808880 AATTTTAATATTTTTTTAA
1 AATTTTAATATTTTTTTAA
*
12808899 TATTTTAATATTTTTTTTAA
1 AATTTTAATA-TTTTTTTAA
* *
12808919 GAATTCTAATACTTTTTTA
1 -AATTTTAATATTTTTTTA
12808938 GAAAAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 9 0.27
20 16 0.48
21 8 0.24
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (19 bp):
AATTTTAATATTTTTTTAA
Found at i:12809108 original size:13 final size:12
Alignment explanation
Indices: 12809068--12809110 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
12809058 AATTATTTTA
12809068 TATTTTT-ATAT
1 TATTTTTAATAT
* *
12809079 CAATTTTAATAT
1 TATTTTTAATAT
12809091 TATTTTTAATATT
1 TATTTTTAATA-T
12809104 TATTTTT
1 TATTTTT
12809111 TTTCTGATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 5 0.19
12 13 0.50
13 8 0.31
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (12 bp):
TATTTTTAATAT
Found at i:12809110 original size:25 final size:25
Alignment explanation
Indices: 12809082--12809129 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
12809072 TTTATATCAA
*
12809082 TTTTAATATTATTTTTAATATTTAT
1 TTTTAATATGATTTTTAATATTTAT
** *
12809107 TTTTTTTCTGATTTTTAATATTT
1 TTTTAATATGATTTTTAATATTT
12809130 TTCATAAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (25 bp):
TTTTAATATGATTTTTAATATTTAT
Found at i:12817660 original size:29 final size:29
Alignment explanation
Indices: 12817589--12817661 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 29
12817579 TTAACAACGC
* *
12817589 AATTTAATTTTAAAATCTGAAAAATATAG
1 AATTAAATTTTAAAATATGAAAAATATAG
12817618 AGATTAAATTTTTAAAA-AT-AAAAAGTATAAG
1 A-ATTAAA-TTTTAAAATATGAAAAA-TAT-AG
12817649 AATTAAATTTTAA
1 AATTAAATTTTAA
12817662 TTTTATAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
29 12 0.32
30 15 0.39
31 11 0.29
ACGTcount: A:0.55, C:0.01, G:0.07, T:0.37
Consensus pattern (29 bp):
AATTAAATTTTAAAATATGAAAAATATAG
Done.