Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 34 of 325
Found at i:12817830 original size:141 final size:141
Alignment explanation
Indices: 12817642--12817924 Score: 566
Period size: 141 Copynumber: 2.0 Consensus size: 141
12817632 AAAATAAAAA
12817642 GTATAAGAATTAAATTTTAATTTTATAAAAAATATAAGGACTTATAATATATTTTAACATAATAA
1 GTATAAGAATTAAATTTTAATTTTATAAAAAATATAAGGACTTATAATATATTTTAACATAATAA
12817707 TAATATTATTAAATTCTTGGAAAATACTACAACATGTTTGGTTGGGTGTATTGGCATAGCCAATA
66 TAATATTATTAAATTCTTGGAAAATACTACAACATGTTTGGTTGGGTGTATTGGCATAGCCAATA
12817772 CACCCCTAATC
131 CACCCCTAATC
12817783 GTATAAGAATTAAATTTTAATTTTATAAAAAATATAAGGACTTATAATATATTTTAACATAATAA
1 GTATAAGAATTAAATTTTAATTTTATAAAAAATATAAGGACTTATAATATATTTTAACATAATAA
12817848 TAATATTATTAAATTCTTGGAAAATACTACAACATGTTTGGTTGGGTGTATTGGCATAGCCAATA
66 TAATATTATTAAATTCTTGGAAAATACTACAACATGTTTGGTTGGGTGTATTGGCATAGCCAATA
12817913 CACCCCTAATC
131 CACCCCTAATC
12817924 G
1 G
12817925 GTGGGGCCTA
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 142 1.00
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.37
Consensus pattern (141 bp):
GTATAAGAATTAAATTTTAATTTTATAAAAAATATAAGGACTTATAATATATTTTAACATAATAA
TAATATTATTAAATTCTTGGAAAATACTACAACATGTTTGGTTGGGTGTATTGGCATAGCCAATA
CACCCCTAATC
Found at i:12820877 original size:15 final size:15
Alignment explanation
Indices: 12820842--12820893 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
12820832 TTAAGAATTT
*
12820842 TATTAAATTAT-ATA
1 TATTTAATTATAATA
12820856 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
12820870 TATTTAATAATAAT-
1 TATTTAATTATAATA
12820884 TATGTTAATT
1 TAT-TTAATT
12820894 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:12820922 original size:120 final size:120
Alignment explanation
Indices: 12820780--12821009 Score: 451
Period size: 120 Copynumber: 1.9 Consensus size: 120
12820770 TTTGAGTAAA
*
12820780 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATCATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
12820845 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
12820900 TTATAGTATCATATATCATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATCATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
12820965 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
12821010 TAAATATGAT
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 109 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (120 bp):
TTATAGTATCATATATCATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
Found at i:12820975 original size:61 final size:61
Alignment explanation
Indices: 12820790--12820977 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
12820780 TTATAGTATC
12820790 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
12820851 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
*
12820910 ATATATCATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
12820971 ATATATT
1 ATATATT
12820978 TTAATTATAA
Statistics
Matches: 95, Mismatches: 22, Indels: 20
0.69 0.16 0.15
Matches are distributed among these distances:
58 3 0.03
59 28 0.29
60 26 0.27
61 35 0.37
62 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.48
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:12820992 original size:16 final size:16
Alignment explanation
Indices: 12820971--12821012 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
12820961 TTATTAAATT
*
12820971 ATATATTTTAATTATA
1 ATATATTTTAATAATA
12820987 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
12821002 AT-TATGTTTAA
1 ATATAT-TTTAA
12821013 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:12820997 original size:15 final size:15
Alignment explanation
Indices: 12820962--12821003 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
12820952 TTAAGAATTT
*
12820962 TATTAAATTAT-ATA
1 TATTTAATTATAATA
12820976 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
12820990 TATTTAATAATAAT
1 TATTTAATTATAAT
12821004 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:12821206 original size:44 final size:45
Alignment explanation
Indices: 12821157--12821247 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
12821147 ACCTCTATTC
* *
12821157 CATTCAACCAAACACAAGA-TTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTTACTATTACACCTCTATTCCAATA
*** *
12821201 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCAATA
1 CATTCAACCAAACACAAGATTTACTATTACACCTCTATTCCAATA
12821246 CA
1 CA
12821248 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.31
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTTACTATTACACCTCTATTCCAATA
Found at i:12821238 original size:45 final size:43
Alignment explanation
Indices: 12821138--12821247 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
12821128 TTTTCTATTA
12821138 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
12821177 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
12821222 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
12821248 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:12821249 original size:16 final size:16
Alignment explanation
Indices: 12821228--12821279 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
12821218 GATTTGCTAT
*
12821228 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
12821244 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
12821260 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
12821276 TACA
1 TACA
12821280 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:12821892 original size:58 final size:58
Alignment explanation
Indices: 12821827--12821942 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
12821817 TTGATACCAT
12821827 GGTGCGTTGGGCCAAACACCAAGCTAATTTCTGTTCATCAAGGTATTTGAAGCCTTTG
1 GGTGCGTTGGGCCAAACACCAAGCTAATTTCTGTTCATCAAGGTATTTGAAGCCTTTG
*
12821885 GGTGCGTTGGGCCAAACACTAAGCTAATTTCTGTTCATCAAGGTATTTGAAGCCTTTG
1 GGTGCGTTGGGCCAAACACCAAGCTAATTTCTGTTCATCAAGGTATTTGAAGCCTTTG
12821943 AGAGATGGGA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (58 bp):
GGTGCGTTGGGCCAAACACCAAGCTAATTTCTGTTCATCAAGGTATTTGAAGCCTTTG
Found at i:12822986 original size:14 final size:14
Alignment explanation
Indices: 12822967--12822996 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
12822957 GAATTCCGGA
12822967 GGGTTCTCATGGGT
1 GGGTTCTCATGGGT
12822981 GGGTTCTCATGGGT
1 GGGTTCTCATGGGT
12822995 GG
1 GG
12822997 TTATACCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.13, G:0.47, T:0.33
Consensus pattern (14 bp):
GGGTTCTCATGGGT
Found at i:12825413 original size:18 final size:18
Alignment explanation
Indices: 12825390--12825654 Score: 108
Period size: 18 Copynumber: 14.3 Consensus size: 18
12825380 GAATAATTAT
12825390 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
12825408 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * **
12825426 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAG
*
12825444 TTATTCAGTATCGAACAATTGATCGG
1 TTATTCAG--T--AAC-A--G-TCAG
* *
12825470 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
12825488 TTATTCAGTGAA-A-TCAG
1 TTATTCAGT-AACAGTCAG
* * * * *
12825505 ATATGCAGTAATTATTAAG
1 TTATTCAGTAA-CAGTCAG
*
12825524 TTATTCAGTAGCAGTCA-
1 TTATTCAGTAACAGTCAG
* *
12825541 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAG
* *
12825560 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* * *
12825578 TTATTCAGTAATATTTAG
1 TTATTCAGTAACAGTCAG
12825596 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAGTC-AG
* * *
12825614 ATATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* * * *
12825632 TTATCCGGTAATAATCAG
1 TTATTCAGTAACAGTCAG
12825650 TTATT
1 TTATT
12825655 TTATACCTAT
Statistics
Matches: 180, Mismatches: 49, Indels: 36
0.68 0.18 0.14
Matches are distributed among these distances:
16 2 0.01
17 13 0.07
18 130 0.72
19 17 0.09
20 1 0.01
21 1 0.01
22 5 0.03
23 1 0.01
24 1 0.01
26 9 0.05
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:12825432 original size:36 final size:36
Alignment explanation
Indices: 12825390--12825654 Score: 126
Period size: 36 Copynumber: 7.1 Consensus size: 36
12825380 GAATAATTAT
*
12825390 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
* * ** *
12825426 TTATTCAATAATAACCAGTTATTCAGTATCGAA-CAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAAC-AATCAA
* *
12825462 TTGATCGGTTATCCAGTAACAGTCAATTATTCAGTGA-AATCAGA
1 TT-A-----T-T-CAGTAACAGTCAGTTATTCAGTAACAATCA-A
* * * * * *
12825506 -TATGCAGTAATTATTAAGTTATTCAGTAGCAGTC-A
1 TTATTCAGTAA-CAGTCAGTTATTCAGTAACAATCAA
* * **
12825541 TTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
* * * *
12825578 TTATTCAGTAATATTTAGTTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATC-AA
* * * * * *
12825615 -TATCCAGTAACAGTCAATTATCCGGTAATAATCAG
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
12825650 TTATT
1 TTATT
12825655 TTATACCTAT
Statistics
Matches: 163, Mismatches: 48, Indels: 36
0.66 0.19 0.15
Matches are distributed among these distances:
35 8 0.05
36 110 0.67
37 19 0.12
42 4 0.02
43 4 0.02
44 18 0.11
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (36 bp):
TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
Found at i:12825539 original size:54 final size:55
Alignment explanation
Indices: 12825469--12825588 Score: 156
Period size: 54 Copynumber: 2.2 Consensus size: 55
12825459 CAATTGATCG
* * *
12825469 GTTATCCAGTAACAGTCAATT-ATTCAGTGA-AATCAGATATGCAGTAATTATTAA
1 GTTATTCAGTAACAGTC-ATTCATTCAGTGACAATCAGATATGCAGTAATGATCAA
* * *
12825523 GTTATTCAGTAGCAGTCATTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 GTTATTCAGTAACAGTCATTCATTCAGTGACAATCAGATATGCAGTAATGATCAA
12825578 -TTATTCAGTAA
1 GTTATTCAGTAA
12825589 TATTTAGTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 3 0.05
54 34 0.60
55 20 0.35
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (55 bp):
GTTATTCAGTAACAGTCATTCATTCAGTGACAATCAGATATGCAGTAATGATCAA
Found at i:12825643 original size:72 final size:71
Alignment explanation
Indices: 12825471--12825654 Score: 194
Period size: 72 Copynumber: 2.5 Consensus size: 71
12825461 ATTGATCGGT
*
12825471 TATCCAGTAACAGTCAATTATTCAGTGAA-ATCAGA-TATGCAGTAATTATTAAGTTATTCAGTA
1 TATCCAGTAACAGTCAATTATTCAGT-AATATCA-ATTATTCAGTAATTATTAAGTTATTCAGTA
* *
12825534 GCAGTCAT
64 ACAGTCAA
* * * * *
12825542 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAA-TATTTAGTTATTCAGTA
1 T-ATCCAGTAACAGTCAATTATTCAGTAAT-ATCAATTATTCAGTAATTATTAAGTTATTCAGTA
12825606 ACAGTCTAA
64 ACAGTC-AA
* * *
12825615 TATCCAGTAACAGTCAATTATCCGGTAATAATCAGTTATT
1 TATCCAGTAACAGTCAATTATTCAGTAAT-ATCAATTATT
12825655 TTATACCTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
71 3 0.03
72 74 0.80
73 15 0.16
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36
Consensus pattern (71 bp):
TATCCAGTAACAGTCAATTATTCAGTAATATCAATTATTCAGTAATTATTAAGTTATTCAGTAAC
AGTCAA
Found at i:12847489 original size:40 final size:40
Alignment explanation
Indices: 12847434--12847510 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
12847424 GGCACTCTTT
12847434 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATCATG
1 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATCATG
12847474 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATC
1 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATC
12847511 TTGTTGAGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (40 bp):
CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATCATG
Found at i:12852684 original size:39 final size:39
Alignment explanation
Indices: 12852641--12852747 Score: 196
Period size: 39 Copynumber: 2.7 Consensus size: 39
12852631 TTTTATTGAT
*
12852641 TGGTTAACGGGAAGATGATGTCATAGATTTTAAAATTAA
1 TGGTTAACAGGAAGATGATGTCATAGATTTTAAAATTAA
*
12852680 TGGTTAACAGGAAGATGATGTCGTAGATTTTAAAATTAA
1 TGGTTAACAGGAAGATGATGTCATAGATTTTAAAATTAA
12852719 TGGTTAACAGGAAGATGATGTCATAGATT
1 TGGTTAACAGGAAGATGATGTCATAGATT
12852748 ACATAATAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.33
Consensus pattern (39 bp):
TGGTTAACAGGAAGATGATGTCATAGATTTTAAAATTAA
Found at i:12856291 original size:25 final size:25
Alignment explanation
Indices: 12856263--12856313 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
12856253 TCATCTTTTC
*
12856263 ATTAACTATATAATTGTTGGTGATA
1 ATTAACTATATAATTGTTGGAGATA
*
12856288 ATTAACTATTTAATTGTTGGAGATA
1 ATTAACTATATAATTGTTGGAGATA
12856313 A
1 A
12856314 AAATATAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.16, T:0.43
Consensus pattern (25 bp):
ATTAACTATATAATTGTTGGAGATA
Found at i:12856718 original size:29 final size:28
Alignment explanation
Indices: 12856686--12856741 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
12856676 ACCTCTTCTC
* *
12856686 TGAAATTAACCAATAAAGAAAAAAAAAGG
1 TGAAATTAACAAACAAA-AAAAAAAAAGG
* *
12856715 TGAATTTGACAAACAAAAAAAAAAAAG
1 TGAAATTAACAAACAAAAAAAAAAAAG
12856742 CTGTAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 10 0.43
29 13 0.57
ACGTcount: A:0.66, C:0.07, G:0.12, T:0.14
Consensus pattern (28 bp):
TGAAATTAACAAACAAAAAAAAAAAAGG
Found at i:12859627 original size:3 final size:3
Alignment explanation
Indices: 12859619--12859645 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
12859609 AGATGCAAAT
12859619 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
12859646 TCTGTTTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:12863757 original size:15 final size:15
Alignment explanation
Indices: 12863739--12863771 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
12863729 AACAACCTGA
12863739 ATGGTTCATTGGTGC
1 ATGGTTCATTGGTGC
12863754 ATGGTTCATTGGTGC
1 ATGGTTCATTGGTGC
12863769 ATG
1 ATG
12863772 CATGATAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.33, T:0.39
Consensus pattern (15 bp):
ATGGTTCATTGGTGC
Found at i:12869238 original size:21 final size:22
Alignment explanation
Indices: 12869196--12869237 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
12869186 TTTAGTCAAC
12869196 GTAAAATTATCTTTGTATTTTT
1 GTAAAATTATCTTTGTATTTTT
*
12869218 GTAAAA-TATC-TTGTCTTTTT
1 GTAAAATTATCTTTGTATTTTT
12869238 TTTTTTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 4 0.21
22 6 0.32
ACGTcount: A:0.26, C:0.07, G:0.10, T:0.57
Consensus pattern (22 bp):
GTAAAATTATCTTTGTATTTTT
Found at i:12869238 original size:22 final size:22
Alignment explanation
Indices: 12869196--12869239 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
12869186 TTTAGTCAAC
*
12869196 GTAAAATTATCTTTGTATTTTT
1 GTAAAATTATCTTTCTATTTTT
*
12869218 GTAAAA-TATCTTGTCTTTTTTT
1 GTAAAATTATCTT-TCTATTTTT
12869240 TTTTGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.25, C:0.07, G:0.09, T:0.59
Consensus pattern (22 bp):
GTAAAATTATCTTTCTATTTTT
Found at i:12869495 original size:20 final size:19
Alignment explanation
Indices: 12869457--12869500 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
12869447 ATAATTACAT
12869457 ATAAAAAATAATAAAATAA
1 ATAAAAAATAATAAAATAA
* *
12869476 ATAAACAATACATGAAATAA
1 ATAAAAAATA-ATAAAATAA
12869496 A-AAAA
1 ATAAAA
12869501 TAACTCTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (19 bp):
ATAAAAAATAATAAAATAA
Found at i:12876434 original size:51 final size:51
Alignment explanation
Indices: 12876374--12876474 Score: 134
Period size: 51 Copynumber: 2.0 Consensus size: 51
12876364 AAATTTAAAT
* * *
12876374 TTAACTCTC-AACTTT-TACATATTACATCAATTTAATCATAATTTTAAAAAA
1 TTAACTCTCAAAATTTATAAATATT-C-TCAATTTAATCATAATTCTAAAAAA
*
12876425 TTAACTCTCAAAATTTATAAATATTCTCAATTTAATCTTAATTCTAAAAA
1 TTAACTCTCAAAATTTATAAATATTCTCAATTTAATCATAATTCTAAAAA
12876475 CTTTAAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
51 31 0.70
52 6 0.14
53 7 0.16
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.42
Consensus pattern (51 bp):
TTAACTCTCAAAATTTATAAATATTCTCAATTTAATCATAATTCTAAAAAA
Found at i:12877155 original size:17 final size:17
Alignment explanation
Indices: 12877135--12877169 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
12877125 TTGTTATTAG
*
12877135 TGGTATTTCAATTATTC
1 TGGTACTTCAATTATTC
12877152 TGGTACTTCAATTATTC
1 TGGTACTTCAATTATTC
12877169 T
1 T
12877170 TCCATTATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.14, G:0.11, T:0.51
Consensus pattern (17 bp):
TGGTACTTCAATTATTC
Found at i:12881825 original size:18 final size:18
Alignment explanation
Indices: 12881798--12881840 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
12881788 TTCGAAAAAG
12881798 AAAA-AAAAATACAAATA
1 AAAATAAAAATACAAATA
* *
12881815 AAAATAAAAATGCAATTA
1 AAAATAAAAATACAAATA
12881833 ATAAATAA
1 A-AAATAA
12881841 TGTTGCATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 4 0.18
18 12 0.55
19 6 0.27
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (18 bp):
AAAATAAAAATACAAATA
Found at i:12889840 original size:18 final size:17
Alignment explanation
Indices: 12889814--12889848 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
12889804 AATATTAAGA
*
12889814 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
12889831 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
12889849 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:12889860 original size:120 final size:120
Alignment explanation
Indices: 12889707--12889990 Score: 446
Period size: 120 Copynumber: 2.4 Consensus size: 120
12889697 TAATTGAAAA
* * *
12889707 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
* *
12889771 TTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAAT
* * *
12889826 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
*
12889891 TTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
12889946 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
12889991 ATGATTAAAT
Statistics
Matches: 150, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
119 14 0.09
120 131 0.87
121 5 0.03
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
TTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:12889962 original size:18 final size:17
Alignment explanation
Indices: 12889934--12889968 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
12889924 ATTATTAAGA
*
12889934 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
12889951 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
12889969 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:12889968 original size:16 final size:16
Alignment explanation
Indices: 12889934--12889988 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
12889924 ATTATTAAGA
12889934 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
12889951 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
12889967 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
12889981 ATGTTTAA
1 AT-TTTAA
12889989 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:12890225 original size:16 final size:16
Alignment explanation
Indices: 12890204--12890271 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
12890194 GATTTGCTAT
12890204 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
12890220 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
12890236 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
12890252 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
12890268 TACA
1 TACA
12890272 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:12897447 original size:25 final size:24
Alignment explanation
Indices: 12897412--12897460 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
12897402 ATATTAAAAT
*
12897412 TTATATAAATATTAAATAAATATAA
1 TTATATAAATATTAAAGAAA-ATAA
*
12897437 TTATATTAATATTAAAGAAAATAA
1 TTATATAAATATTAAAGAAAATAA
12897461 GAATCCCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
TTATATAAATATTAAAGAAAATAA
Found at i:12900722 original size:12 final size:12
Alignment explanation
Indices: 12900705--12900729 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12900695 TCTTTCTCCC
12900705 ACCCTAAGTTTG
1 ACCCTAAGTTTG
12900717 ACCCTAAGTTTG
1 ACCCTAAGTTTG
12900729 A
1 A
12900730 TTAAAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (12 bp):
ACCCTAAGTTTG
Found at i:12908626 original size:21 final size:21
Alignment explanation
Indices: 12908588--12908639 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
12908578 GAAGAAAAAA
*
12908588 AAATCAATACCTAACATCAATC
1 AAATCAA-ACCCAACATCAATC
12908610 AAATCAAACCCAACATCAATC
1 AAATCAAACCCAACATCAATC
12908631 AAATCAAAC
1 AAATCAAAC
12908640 AAAAGAAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 22 0.76
22 7 0.24
ACGTcount: A:0.54, C:0.29, G:0.00, T:0.17
Consensus pattern (21 bp):
AAATCAAACCCAACATCAATC
Found at i:12914392 original size:26 final size:26
Alignment explanation
Indices: 12914362--12914420 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
12914352 AGGTGGAAAA
*
12914362 TGTAATTAAATCCACAGTATAAATTT
1 TGTAATTAAATCCACAGTAAAAATTT
*
12914388 TGTAATTAAATCCATAGTAAAAATTT
1 TGTAATTAAATCCACAGTAAAAATTT
*
12914414 TGGAATT
1 TGTAATT
12914421 TATTAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.39
Consensus pattern (26 bp):
TGTAATTAAATCCACAGTAAAAATTT
Found at i:12916210 original size:31 final size:31
Alignment explanation
Indices: 12916175--12916268 Score: 79
Period size: 31 Copynumber: 3.1 Consensus size: 31
12916165 TTAAAAAAAT
*
12916175 TATATGATTAAATT-AAAATTAAAATTTAATA
1 TATAT-ATTAAATTCAAAATCAAAATTTAATA
* * * *
12916206 TATATAGTAGATTCATAATCAAAATTTTATA
1 TATATATTAAATTCAAAATCAAAATTTAATA
* *
12916237 TATATAATTACA--CCAAATCAAAATTT-ATA
1 TATAT-ATTAAATTCAAAATCAAAATTTAATA
12916266 TAT
1 TAT
12916269 CAAATTCATA
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
29 6 0.12
30 18 0.35
31 24 0.46
32 4 0.08
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.40
Consensus pattern (31 bp):
TATATATTAAATTCAAAATCAAAATTTAATA
Found at i:12940163 original size:3 final size:3
Alignment explanation
Indices: 12940155--12940184 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
12940145 GGTAAGCATT
12940155 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
12940185 CTGTTTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:12944562 original size:26 final size:28
Alignment explanation
Indices: 12944527--12944594 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
12944517 TTTATTTGAG
*
12944527 TTTTAGATTTTTTTTATGAATT-G-AAAT
1 TTTTA-ATTTTTTATATGAATTGGTAAAT
* * *
12944554 TTTTAATTTTTTATATTATTTGGTAAGT
1 TTTTAATTTTTTATATGAATTGGTAAAT
12944582 TTTTAATTTTTTA
1 TTTTAATTTTTTA
12944595 AAATATTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 13 0.37
27 6 0.17
28 16 0.46
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (28 bp):
TTTTAATTTTTTATATGAATTGGTAAAT
Found at i:12946341 original size:12 final size:13
Alignment explanation
Indices: 12946282--12946342 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
12946272 GTCATACATT
12946282 ATAAAAGAAAAAA
1 ATAAAAGAAAAAA
*
12946295 A-AAGAGGAAAAAA
1 ATAA-AAGAAAAAA
12946308 ATAAAGAGAAAAATA
1 ATAAA-AGAAAAA-A
12946323 ACGTAAAAG-AAAAA
1 A--TAAAAGAAAAAA
12946337 ATAAAA
1 ATAAAA
12946343 TAAATTTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
12 7 0.17
13 11 0.28
14 10 0.25
15 6 0.15
16 2 0.05
17 4 0.10
ACGTcount: A:0.77, C:0.02, G:0.13, T:0.08
Consensus pattern (13 bp):
ATAAAAGAAAAAA
Found at i:12946346 original size:17 final size:18
Alignment explanation
Indices: 12946284--12946346 Score: 53
Period size: 17 Copynumber: 3.7 Consensus size: 18
12946274 CATACATTAT
* *
12946284 AAAAGAAAAAAAAAGAG-
1 AAAATAAAATAAAAGAGA
*
12946301 GAAA-AAAAT-AAAGAGA
1 AAAATAAAATAAAAGAGA
**
12946317 AAAATAACGTAAAAGA-A
1 AAAATAAAATAAAAGAGA
12946334 AAAATAAAATAAA
1 AAAATAAAATAAA
12946347 TTTAAAAATA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
15 6 0.17
16 7 0.19
17 18 0.50
18 5 0.14
ACGTcount: A:0.78, C:0.02, G:0.13, T:0.08
Consensus pattern (18 bp):
AAAATAAAATAAAAGAGA
Found at i:12959655 original size:47 final size:48
Alignment explanation
Indices: 12959548--12959738 Score: 208
Period size: 47 Copynumber: 3.9 Consensus size: 48
12959538 AGTGTGATTT
* * * *
12959548 CCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAAATGTGATTTGTGCTT
1 CCGTATAAGACCATAGCTGGGATATGGCATC-G-G--ATGTGATATGTGCTA
*
12959600 CCGTATAAGACCATATCTGGGATATGGCATCGG-TGTGATATGTGCTA
1 CCGTATAAGACCATAGCTGGGATATGGCATCGGATGTGATATGTGCTA
* * * *
12959647 CTGTATAAGACCATATCTGGGATATGGCATCAG-TGTGATATGTGAT-
1 CCGTATAAGACCATAGCTGGGATATGGCATCGGATGTGATATGTGCTA
* * *
12959693 CCGTATAAGACCATGGCTGGGCTATGGCCTCGGTATGTGATATGTG
1 CCGTATAAGACCATAGCTGGGATATGGCATCGG-ATGTGATATGTG
12959739 ACTATGTGCA
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
46 27 0.22
47 55 0.45
48 11 0.09
50 1 0.01
51 1 0.01
52 28 0.23
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (48 bp):
CCGTATAAGACCATAGCTGGGATATGGCATCGGATGTGATATGTGCTA
Found at i:12963490 original size:46 final size:47
Alignment explanation
Indices: 12963378--12963591 Score: 191
Period size: 46 Copynumber: 4.4 Consensus size: 47
12963368 TGGTTGGACC
* * * * *
12963378 ATGGCAGCA-TGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCT
1 ATGGCATCAGTGTGATATGTG-CTTCCGTATAAGACCATATCTGGGAT
* *
12963425 ATGGCTTCGGAGAAATGTGATTTGTGCTTCCGTATAAGACCATATC-GGGAT
1 ATGGCATC--AG---TGTGATATGTGCTTCCGTATAAGACCATATCTGGGAT
* * *
12963476 ATGGCATCGGTGTGATATGTGCTACTGTATAAGACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGTGCTTCCGTATAAGACCATATCTGGGAT
* ** *
12963523 ATGGCATCAGTGTGATATGTG-ATCCGTATAAGACCATGGCTGGGCT
1 ATGGCATCAGTGTGATATGTGCTTCCGTATAAGACCATATCTGGGAT
* *
12963569 ATGGCCTCGGTATGTGATATGTG
1 ATGGCATCAG--TGTGATATGTG
12963592 ACTATGTGCA
Statistics
Matches: 137, Mismatches: 21, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
46 55 0.40
47 31 0.23
48 11 0.08
49 2 0.01
51 11 0.08
52 18 0.13
53 9 0.07
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGGCATCAGTGTGATATGTGCTTCCGTATAAGACCATATCTGGGAT
Found at i:12982788 original size:7 final size:7
Alignment explanation
Indices: 12982776--12982810 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
12982766 TGGATAGTAG
12982776 AATATTT
1 AATATTT
12982783 AATATTT
1 AATATTT
12982790 AATATTT
1 AATATTT
12982797 AATATTT
1 AATATTT
12982804 AATATTT
1 AATATTT
12982811 TAGATATTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATATTT
Found at i:12988212 original size:40 final size:40
Alignment explanation
Indices: 12988168--12988248 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
12988158 TTTGTGGTCC
12988168 TCCAATTAATAAATTAACTTCAGTTGTCTAGCATGCATCA
1 TCCAATTAATAAATTAACTTCAGTTGTCTAGCATGCATCA
12988208 TCCAATTAATAAATTAACTTCAGTTGTCTAGCATGCATCA
1 TCCAATTAATAAATTAACTTCAGTTGTCTAGCATGCATCA
12988248 T
1 T
12988249 TGAATGGTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.36
Consensus pattern (40 bp):
TCCAATTAATAAATTAACTTCAGTTGTCTAGCATGCATCA
Found at i:12997758 original size:8 final size:8
Alignment explanation
Indices: 12997745--12997773 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
12997735 TTATGTTTAG
12997745 TATATTAT
1 TATATTAT
12997753 TATATTAT
1 TATATTAT
12997761 TATATTAT
1 TATATTAT
12997769 TATAT
1 TATAT
12997774 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:12997806 original size:5 final size:5
Alignment explanation
Indices: 12997796--12997832 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
12997786 TTATGTTTTA
12997796 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
12997833 ATAAACTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:12999135 original size:15 final size:15
Alignment explanation
Indices: 12999115--12999171 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
12999105 CGATGAATTT
12999115 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
12999130 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
12999145 ATTGAATTTATATTG
1 ATTGAATTTATATTG
12999160 ATTGAA-TTATAT
1 ATTGAATTTATAT
12999172 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:12999574 original size:23 final size:23
Alignment explanation
Indices: 12999544--12999630 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
12999534 GCTTTATCGA
* *
12999544 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
12999567 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
12999588 TCAGGCACCTCGTGTGTC-T-TT
1 TCAGGCACCTCATGTGTCGTATT
* * *
12999609 TTAGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
12999631 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
20 1 0.02
21 32 0.60
22 1 0.02
23 19 0.36
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.39
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:12999591 original size:21 final size:22
Alignment explanation
Indices: 12999556--12999605 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
12999546 AGGCACTTTA
12999556 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA-TTCAGGCACCTCG
12999579 TGTGTCGTA-TCAGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
12999600 TGTGTC
1 TGTGTC
12999606 TTTTTAGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 18 0.67
23 9 0.33
ACGTcount: A:0.12, C:0.26, G:0.28, T:0.34
Consensus pattern (22 bp):
TGTGTCGTATTCAGGCACCTCG
Found at i:13001345 original size:19 final size:19
Alignment explanation
Indices: 13001321--13001358 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
13001311 AGTTCAATGA
13001321 CTTAAAATAAAAACTTTCG
1 CTTAAAATAAAAACTTTCG
*
13001340 CTTAAAATGAAAACTTTCG
1 CTTAAAATAAAAACTTTCG
13001359 AATAGTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (19 bp):
CTTAAAATAAAAACTTTCG
Found at i:13004295 original size:50 final size:50
Alignment explanation
Indices: 13004236--13004412 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
13004226 CCATGGAAAC
13004236 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
13004286 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
13004336 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
13004386 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
13004413 CTGATCAGTG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 89 0.79
51 24 0.21
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:13004428 original size:31 final size:31
Alignment explanation
Indices: 13004390--13004560 Score: 252
Period size: 31 Copynumber: 5.5 Consensus size: 31
13004380 AAATGACAAC
13004390 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
13004421 TGAAAAGTGGTAGTTTCCGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
13004452 TGAAAAGTGGTAGCTTCGGCTACCTGATTAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
13004483 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* **
13004514 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
13004545 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
13004561 TGACTACAAG
Statistics
Matches: 126, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 126 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:13004578 original size:7 final size:7
Alignment explanation
Indices: 13004566--13004594 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
13004556 AGCTTTGACT
13004566 ACAAGTG
1 ACAAGTG
13004573 ACAAGTG
1 ACAAGTG
13004580 ACAAGTG
1 ACAAGTG
13004587 ACAAGTG
1 ACAAGTG
13004594 A
1 A
13004595 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:13004667 original size:47 final size:48
Alignment explanation
Indices: 13004598--13004723 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 48
13004588 CAAGTGATTT
* *
13004598 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
13004645 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
13004693 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
13004724 TTATGTAAAG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 66 0.96
48 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:13009783 original size:583 final size:583
Alignment explanation
Indices: 13008677--13009846 Score: 2340
Period size: 583 Copynumber: 2.0 Consensus size: 583
13008667 AAGATGTTCC
13008677 TCAAACCAGTTCCAGGTCAGTGTTTTTTACTTATTTATGACAGATGGAAAAATACATATTTTAAC
1 TCAAACCAGTTCCAGGTCAGTGTTTTTTACTTATTTATGACAGATGGAAAAATACATATTTTAAC
13008742 TAATATCTGAAACATTGGTTCTCCAGCAACGAATTTCATGCAAAAACCAGTTCCTGGGGTGAAGT
66 TAATATCTGAAACATTGGTTCTCCAGCAACGAATTTCATGCAAAAACCAGTTCCTGGGGTGAAGT
13008807 CAGTCCTCTTATTGGCACTGGTAATACTGAAGATCCTAAGGGTAAAGGCATAGCCATGGATGATG
131 CAGTCCTCTTATTGGCACTGGTAATACTGAAGATCCTAAGGGTAAAGGCATAGCCATGGATGATG
13008872 ACTGGTTGCTGGTCTCTAAATTGAAATCCCAAAGCAGGGGTGGAAACAGTGCTGACAAACAGCGG
196 ACTGGTTGCTGGTCTCTAAATTGAAATCCCAAAGCAGGGGTGGAAACAGTGCTGACAAACAGCGG
13008937 GTTAAACTCGGGCATCCTAATCATTTAAAGGGTTCAAAAGATGACGACACAAATGCTGTTCACGA
261 GTTAAACTCGGGCATCCTAATCATTTAAAGGGTTCAAAAGATGACGACACAAATGCTGTTCACGA
13009002 CGATGATTGCGATTCCTTGGATGATGAGGATGACTTTGATTCCGATGATAGTCAAAAGAGCCAAG
326 CGATGATTGCGATTCCTTGGATGATGAGGATGACTTTGATTCCGATGATAGTCAAAAGAGCCAAG
13009067 AGAGTCGCAAGAAGAGCAAATGGTTTAAGGAATTTTTTGAGAGAATGGACGCCTTGAATGCAGAG
391 AGAGTCGCAAGAAGAGCAAATGGTTTAAGGAATTTTTTGAGAGAATGGACGCCTTGAATGCAGAG
13009132 GAGATTGATCAAACCCTGTGGCACTGTCCAGCATGCCAAGGTGGTCCAGGTGCCATCAAATGGTA
456 GAGATTGATCAAACCCTGTGGCACTGTCCAGCATGCCAAGGTGGTCCAGGTGCCATCAAATGGTA
13009197 CAGAAGCATTAGTGACCTGATAGCACATTCCAAAAAGATTGGATCGAGAAGGGTGAAGTTACA
521 CAGAAGCATTAGTGACCTGATAGCACATTCCAAAAAGATTGGATCGAGAAGGGTGAAGTTACA
13009260 TCAAACCAGTTCCAGGTCAGTGTTTTTTACTTATTTATGACAGATGGAAAAATACATATTTTAAC
1 TCAAACCAGTTCCAGGTCAGTGTTTTTTACTTATTTATGACAGATGGAAAAATACATATTTTAAC
13009325 TAATATCTGAAACATTGGTTCTCCAGCAACGAATTTCATGCAAAAACCAGTTCCTGGGGTGAAGT
66 TAATATCTGAAACATTGGTTCTCCAGCAACGAATTTCATGCAAAAACCAGTTCCTGGGGTGAAGT
13009390 CAGTCCTCTTATTGGCACTGGTAATACTGAAGATCCTAAGGGTAAAGGCATAGCCATGGATGATG
131 CAGTCCTCTTATTGGCACTGGTAATACTGAAGATCCTAAGGGTAAAGGCATAGCCATGGATGATG
13009455 ACTGGTTGCTGGTCTCTAAATTGAAATCCCAAAGCAGGGGTGGAAACAGTGCTGACAAACAGCGG
196 ACTGGTTGCTGGTCTCTAAATTGAAATCCCAAAGCAGGGGTGGAAACAGTGCTGACAAACAGCGG
13009520 GTTAAACTCGGGCATCCTAATCATTTAAAGGGTTCAAAAGATGACGACACAAATGCTGTTCACGA
261 GTTAAACTCGGGCATCCTAATCATTTAAAGGGTTCAAAAGATGACGACACAAATGCTGTTCACGA
13009585 CGATGATTGCGATTCCTTGGATGATGAGGATGACTTTGATTCCGATGATAGTCAAAAGAGCCAAG
326 CGATGATTGCGATTCCTTGGATGATGAGGATGACTTTGATTCCGATGATAGTCAAAAGAGCCAAG
13009650 AGAGTCGCAAGAAGAGCAAATGGTTTAAGGAATTTTTTGAGAGAATGGACGCCTTGAATGCAGAG
391 AGAGTCGCAAGAAGAGCAAATGGTTTAAGGAATTTTTTGAGAGAATGGACGCCTTGAATGCAGAG
13009715 GAGATTGATCAAACCCTGTGGCACTGTCCAGCATGCCAAGGTGGTCCAGGTGCCATCAAATGGTA
456 GAGATTGATCAAACCCTGTGGCACTGTCCAGCATGCCAAGGTGGTCCAGGTGCCATCAAATGGTA
13009780 CAGAAGCATTAGTGACCTGATAGCACATTCCAAAAAGATTGGATCGAGAAGGGTGAAGTTACA
521 CAGAAGCATTAGTGACCTGATAGCACATTCCAAAAAGATTGGATCGAGAAGGGTGAAGTTACA
13009843 TCAA
1 TCAA
13009847 GAGTTCGCGA
Statistics
Matches: 587, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
583 587 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (583 bp):
TCAAACCAGTTCCAGGTCAGTGTTTTTTACTTATTTATGACAGATGGAAAAATACATATTTTAAC
TAATATCTGAAACATTGGTTCTCCAGCAACGAATTTCATGCAAAAACCAGTTCCTGGGGTGAAGT
CAGTCCTCTTATTGGCACTGGTAATACTGAAGATCCTAAGGGTAAAGGCATAGCCATGGATGATG
ACTGGTTGCTGGTCTCTAAATTGAAATCCCAAAGCAGGGGTGGAAACAGTGCTGACAAACAGCGG
GTTAAACTCGGGCATCCTAATCATTTAAAGGGTTCAAAAGATGACGACACAAATGCTGTTCACGA
CGATGATTGCGATTCCTTGGATGATGAGGATGACTTTGATTCCGATGATAGTCAAAAGAGCCAAG
AGAGTCGCAAGAAGAGCAAATGGTTTAAGGAATTTTTTGAGAGAATGGACGCCTTGAATGCAGAG
GAGATTGATCAAACCCTGTGGCACTGTCCAGCATGCCAAGGTGGTCCAGGTGCCATCAAATGGTA
CAGAAGCATTAGTGACCTGATAGCACATTCCAAAAAGATTGGATCGAGAAGGGTGAAGTTACA
Found at i:13013179 original size:39 final size:37
Alignment explanation
Indices: 13013112--13013204 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
13013102 ACCAGAATGG
* *
13013112 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
13013151 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
13013188 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
13013205 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:13013399 original size:24 final size:26
Alignment explanation
Indices: 13013348--13013408 Score: 76
Period size: 24 Copynumber: 2.4 Consensus size: 26
13013338 ACATATATTC
13013348 TCAATTCAATCACACTTTTTCACACTT
1 TCAATTCAAT-ACACTTTTTCACACTT
13013375 TCAATTCAAT-CA-TTTTTC-CACCTT
1 TCAATTCAATACACTTTTTCACA-CTT
13013399 TCAA-TCAATA
1 TCAATTCAATA
13013409 ATTAATCCGC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
23 7 0.22
24 13 0.41
25 2 0.06
27 10 0.31
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (26 bp):
TCAATTCAATACACTTTTTCACACTT
Found at i:13013601 original size:18 final size:18
Alignment explanation
Indices: 13013559--13013602 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
13013549 ATTCCCACTC
*
13013559 ATAATAATAATACTAATA
1 ATAATACTAATACTAATA
13013577 ATAATACTAATACTAATA
1 ATAATACTAATACTAATA
*
13013595 TTAATACT
1 ATAATACT
13013603 TACCTCACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAATACTAATACTAATA
Found at i:13013602 original size:12 final size:12
Alignment explanation
Indices: 13013560--13013600 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
13013550 TTCCCACTCA
13013560 TAATAATAATAC
1 TAATAATAATAC
13013572 TAATAATAATAC
1 TAATAATAATAC
* *
13013584 TAATACTAATAT
1 TAATAATAATAC
13013596 TAATA
1 TAATA
13013601 CTTACCTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (12 bp):
TAATAATAATAC
Found at i:13014327 original size:16 final size:16
Alignment explanation
Indices: 13014308--13014342 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
13014298 TTCTTTGTTC
13014308 TTTCTATTCTGTTTCT
1 TTTCTATTCTGTTTCT
* *
13014324 TTTCTGTTTTGTTTCT
1 TTTCTATTCTGTTTCT
13014340 TTT
1 TTT
13014343 ATATATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.14, G:0.09, T:0.74
Consensus pattern (16 bp):
TTTCTATTCTGTTTCT
Found at i:13014416 original size:28 final size:29
Alignment explanation
Indices: 13014345--13014408 Score: 76
Period size: 31 Copynumber: 2.2 Consensus size: 29
13014335 TTTCTTTTAT
*
13014345 ATATAATAATATAATATTTATAATGTAATTA
1 ATATAATAATAT-A-CTTTATAATGTAATTA
* *
13014376 ATTTAATAATATACTTTATAAT-TAATTT
1 ATATAATAATATACTTTATAATGTAATTA
13014404 ATATA
1 ATATA
13014409 TTTATATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 9 0.31
29 8 0.28
30 1 0.03
31 11 0.38
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (29 bp):
ATATAATAATATACTTTATAATGTAATTA
Found at i:13019358 original size:21 final size:21
Alignment explanation
Indices: 13019316--13019358 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
13019306 TTCACTATAC
*
13019316 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
13019337 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
13019358 A
1 A
13019359 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:13020467 original size:39 final size:37
Alignment explanation
Indices: 13020400--13020492 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
13020390 ACCAGAATGG
* *
13020400 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
13020439 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
13020476 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
13020493 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:13020686 original size:24 final size:25
Alignment explanation
Indices: 13020636--13020695 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 25
13020626 ACATATATTC
13020636 TCAATTCAATCACACTTTTCACACTT
1 TCAATTCAAT-ACACTTTTCACACTT
*
13020662 TCAATTCAAT-CATTTTTC-CACCTT
1 TCAATTCAATACACTTTTCACA-CTT
13020686 TCAA-TCAATA
1 TCAATTCAATA
13020696 ATTAATCCGC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
23 7 0.23
24 14 0.45
26 10 0.32
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (25 bp):
TCAATTCAATACACTTTTCACACTT
Found at i:13020888 original size:18 final size:18
Alignment explanation
Indices: 13020846--13020889 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
13020836 ATTCCCACTC
*
13020846 ATAATAATAATACTAATA
1 ATAATACTAATACTAATA
13020864 ATAATACTAATACTAATA
1 ATAATACTAATACTAATA
*
13020882 TTAATACT
1 ATAATACT
13020890 TACCTCACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAATACTAATACTAATA
Found at i:13020889 original size:12 final size:12
Alignment explanation
Indices: 13020847--13020887 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
13020837 TTCCCACTCA
13020847 TAATAATAATAC
1 TAATAATAATAC
13020859 TAATAATAATAC
1 TAATAATAATAC
* *
13020871 TAATACTAATAT
1 TAATAATAATAC
13020883 TAATA
1 TAATA
13020888 CTTACCTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (12 bp):
TAATAATAATAC
Found at i:13021610 original size:16 final size:16
Alignment explanation
Indices: 13021591--13021625 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
13021581 TTCTTTGTTC
13021591 TTTCTATTCTGTTTCT
1 TTTCTATTCTGTTTCT
* *
13021607 TTTCTGTTTTGTTTCT
1 TTTCTATTCTGTTTCT
13021623 TTT
1 TTT
13021626 ATATATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.14, G:0.09, T:0.74
Consensus pattern (16 bp):
TTTCTATTCTGTTTCT
Found at i:13021697 original size:28 final size:28
Alignment explanation
Indices: 13021633--13021698 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
13021623 TTTATATATA
13021633 ATAA-TATATATTTATAATGTAATTAAT
1 ATAATTATATATTTATAATGTAATTAAT
* * *
13021660 TTAATAATATACTTTATAAT-TAATTTAT
1 ATAATTATATA-TTTATAATGTAATTAAT
*
13021688 ATATTTATATA
1 ATAATTATATA
13021699 AATAATAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 3 0.10
28 20 0.65
29 8 0.26
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (28 bp):
ATAATTATATATTTATAATGTAATTAAT
Found at i:13023022 original size:50 final size:51
Alignment explanation
Indices: 13022958--13023094 Score: 177
Period size: 51 Copynumber: 2.7 Consensus size: 51
13022948 ATCTGGTACG
* *
13022958 CATAGTAGCTTGCACTTAGTACTACACACGTGACCTAA-CCATCTACTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGACTACA
* * * ** ** *
13023008 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGACTACA
13023059 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
13023095 CACAATAGAT
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 34 0.47
51 39 0.53
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGACTACA
Found at i:13023083 original size:51 final size:50
Alignment explanation
Indices: 13022946--13023093 Score: 197
Period size: 50 Copynumber: 2.9 Consensus size: 50
13022936 GTAGCCAAAG
* *
13022946 CTATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
* ** * * *
13022996 CCATCTACTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
* *
13023046 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 -CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
13023094 TCACAATAGA
Statistics
Matches: 81, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 42 0.52
51 39 0.48
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (50 bp):
CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
Found at i:13025090 original size:6 final size:6
Alignment explanation
Indices: 13025079--13025104 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
13025069 TTCAATGCAA
13025079 TTAATT TTAATT TTAATT TTAATT TT
1 TTAATT TTAATT TTAATT TTAATT TT
13025105 GTGTAAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTAATT
Found at i:13030710 original size:18 final size:18
Alignment explanation
Indices: 13030668--13030711 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
13030658 AATTCCCCTC
*
13030668 ATAATAATAATACTAATA
1 ATAATACTAATACTAATA
13030686 ATAATACTAATACTAATA
1 ATAATACTAATACTAATA
*
13030704 TTAATACT
1 ATAATACT
13030712 TACCTCACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAATACTAATACTAATA
Found at i:13030711 original size:12 final size:12
Alignment explanation
Indices: 13030669--13030709 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
13030659 ATTCCCCTCA
13030669 TAATAATAATAC
1 TAATAATAATAC
13030681 TAATAATAATAC
1 TAATAATAATAC
* *
13030693 TAATACTAATAT
1 TAATAATAATAC
13030705 TAATA
1 TAATA
13030710 CTTACCTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (12 bp):
TAATAATAATAC
Found at i:13031505 original size:28 final size:27
Alignment explanation
Indices: 13031460--13031514 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
13031450 TCTTTTATAT
13031460 ATAATAATATAATATTATAATGTAATTA
1 ATAATAATATAATATTATAAT-TAATTA
*
13031488 ATAATTAATATACT-TTATAATTAATTA
1 ATAA-TAATATAATATTATAATTAATTA
13031515 TATATTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 6 0.24
28 11 0.44
29 8 0.32
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (27 bp):
ATAATAATATAATATTATAATTAATTA
Found at i:13031527 original size:16 final size:19
Alignment explanation
Indices: 13031489--13031533 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 19
13031479 ATGTAATTAA
13031489 TAATTAATATACTTTATAAT
1 TAATTAATATACTTTAT-AT
13031509 TAATT-ATATA-TTTAT-T
1 TAATTAATATACTTTATAT
*
13031525 TAAATAATA
1 TAATTAATA
13031534 ATATAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 5 0.22
17 3 0.13
18 5 0.22
19 5 0.22
20 5 0.22
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATTAATATACTTTATAT
Found at i:13031532 original size:20 final size:19
Alignment explanation
Indices: 13031487--13031538 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
13031477 TAATGTAATT
13031487 AATAATTAATATACTTTATA
1 AATAATT-ATATACTTTATA
*
13031507 ATTAATTATATA-TTTATTTA
1 AATAATTATATACTTTA--TA
*
13031527 AATAATAATATA
1 AATAATTATATA
13031539 AAAATCTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 4 0.15
19 5 0.19
20 18 0.67
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATTATATACTTTATA
Found at i:13032837 original size:50 final size:51
Alignment explanation
Indices: 13032773--13032902 Score: 154
Period size: 51 Copynumber: 2.6 Consensus size: 51
13032763 TTCTGGTACG
* * * *
13032773 CATAGTAGCTTGCACTTAGTACTACACACGTGACCTAA-CCATCTACTACA
1 CATAGTAGCCTGCACTTAGTACTACACACCTGACCGAAGCCATCGACTACA
* * ** ** *
13032823 CGTAGTAGCCTGCACTTAGTACTACACACCTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACCTGACCGAAGCCATCGACTACA
13032874 CATAGTAGCCTGCACTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
13032903 TGGACCTCAC
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 33 0.49
51 34 0.51
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACACCTGACCGAAGCCATCGACTACA
Found at i:13032894 original size:51 final size:50
Alignment explanation
Indices: 13032767--13032902 Score: 164
Period size: 50 Copynumber: 2.7 Consensus size: 50
13032757 CAAAGCTTCT
* * * *
13032767 GGTACGCATAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACCTGACCGAACCATCG
** * * * **
13032817 ACTACACGTAGTAGCCTGCACTTAGTACTACACACCTGATCGAAGTTATCG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACCTGACCGAA-CCATCG
13032868 GGTACGCATAGTAGCCTGCACTTAGTACTACACAC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACAC
13032903 TGGACCTCAC
Statistics
Matches: 70, Mismatches: 15, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
50 36 0.51
51 34 0.49
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (50 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACACCTGACCGAACCATCG
Found at i:13038993 original size:21 final size:21
Alignment explanation
Indices: 13038951--13038993 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
13038941 TTCACTATAC
*
13038951 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
13038972 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
13038993 A
1 A
13038994 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:13040100 original size:39 final size:37
Alignment explanation
Indices: 13040033--13040125 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
13040023 ACCAGAATGG
* *
13040033 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
13040072 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
13040109 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
13040126 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:13040303 original size:25 final size:24
Alignment explanation
Indices: 13040269--13040330 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 24
13040259 ACATATATTC
13040269 TCAATTCAATCACATTTT-CACACTT
1 TCAATTCAATCA-ATTTTCCAC-CTT
*
13040294 TCAATTCAATCATTTTTCCACCTT
1 TCAATTCAATCAATTTTCCACCTT
13040318 TCAA-TCAAT-AATT
1 TCAATTCAATCAATT
13040331 AATCCGCAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
22 3 0.09
23 5 0.15
24 11 0.32
25 15 0.44
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.42
Consensus pattern (24 bp):
TCAATTCAATCAATTTTCCACCTT
Found at i:13040325 original size:23 final size:25
Alignment explanation
Indices: 13040269--13040326 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
13040259 ACATATATTC
13040269 TCAATTCAATCACATTTTCACACTT
1 TCAATTCAATCACATTTTCACACTT
*
13040294 TCAATTCAATCA-TTTTTC-CACCTT
1 TCAATTCAATCACATTTTCACA-CTT
13040318 TCAA-TCAAT
1 TCAATTCAAT
13040327 AATTAATCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 7 0.23
24 12 0.39
25 12 0.39
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (25 bp):
TCAATTCAATCACATTTTCACACTT
Found at i:13040518 original size:18 final size:18
Alignment explanation
Indices: 13040476--13040519 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
13040466 ATTCCCACTC
*
13040476 ATAATAATAATACTAATA
1 ATAATACTAATACTAATA
13040494 ATAATACTAATACTAATA
1 ATAATACTAATACTAATA
*
13040512 TTAATACT
1 ATAATACT
13040520 TACCTCACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAATACTAATACTAATA
Found at i:13040519 original size:12 final size:12
Alignment explanation
Indices: 13040477--13040517 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
13040467 TTCCCACTCA
13040477 TAATAATAATAC
1 TAATAATAATAC
13040489 TAATAATAATAC
1 TAATAATAATAC
* *
13040501 TAATACTAATAT
1 TAATAATAATAC
13040513 TAATA
1 TAATA
13040518 CTTACCTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (12 bp):
TAATAATAATAC
Found at i:13041244 original size:16 final size:16
Alignment explanation
Indices: 13041225--13041259 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
13041215 TTCTTTGTTC
13041225 TTTCTATTCTGTTTCT
1 TTTCTATTCTGTTTCT
* *
13041241 TTTCTGTTTTGTTTCT
1 TTTCTATTCTGTTTCT
13041257 TTT
1 TTT
13041260 ATATATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.14, G:0.09, T:0.74
Consensus pattern (16 bp):
TTTCTATTCTGTTTCT
Found at i:13041333 original size:28 final size:29
Alignment explanation
Indices: 13041262--13041325 Score: 76
Period size: 31 Copynumber: 2.2 Consensus size: 29
13041252 TTTCTTTTAT
*
13041262 ATATAATAATATAATATTTATAATGTAATTA
1 ATATAATAATAT-A-CTTTATAATGTAATTA
* *
13041293 ATTTAATAATATACTTTATAAT-TAATTT
1 ATATAATAATATACTTTATAATGTAATTA
13041321 ATATA
1 ATATA
13041326 TTTATATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 9 0.31
29 8 0.28
30 1 0.03
31 11 0.38
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (29 bp):
ATATAATAATATACTTTATAATGTAATTA
Found at i:13042657 original size:50 final size:51
Alignment explanation
Indices: 13042593--13042729 Score: 177
Period size: 51 Copynumber: 2.7 Consensus size: 51
13042583 ATCTGGTACG
* *
13042593 CATAGTAGCTTGCACTTAGTACTACACACGTGACCTAA-CCATCTACTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGACTACA
* * * ** ** *
13042643 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGACTACA
13042694 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
13042730 CACAATAGAT
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 34 0.47
51 39 0.53
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGACTACA
Found at i:13042718 original size:51 final size:50
Alignment explanation
Indices: 13042581--13042728 Score: 197
Period size: 50 Copynumber: 2.9 Consensus size: 50
13042571 GTAGCCAAAG
* *
13042581 CTATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
* ** * * *
13042631 CCATCTACTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
* *
13042681 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 -CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
13042729 TCACAATAGA
Statistics
Matches: 81, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 42 0.52
51 39 0.48
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (50 bp):
CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
Found at i:13044729 original size:6 final size:6
Alignment explanation
Indices: 13044718--13044743 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
13044708 TTCAATGCAA
13044718 TTAATT TTAATT TTAATT TTAATT TT
1 TTAATT TTAATT TTAATT TTAATT TT
13044744 GTGTAAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTAATT
Found at i:13056585 original size:22 final size:22
Alignment explanation
Indices: 13056544--13056586 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
13056534 CTATATATAC
* *
13056544 CTATAAGTGAAAAACGGTGCTA
1 CTATAAGGGAAAAACAGTGCTA
*
13056566 CTATAAGGGAAAAATAGTGCT
1 CTATAAGGGAAAAACAGTGCT
13056587 TGTGCTTCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (22 bp):
CTATAAGGGAAAAACAGTGCTA
Found at i:13068468 original size:4 final size:4
Alignment explanation
Indices: 13068459--13068484 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
13068449 AGAATAAAAA
13068459 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
13068485 TCAACGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:13072623 original size:6 final size:6
Alignment explanation
Indices: 13072612--13072636 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
13072602 AATTAATTAA
13072612 TTATGG TTATGG TTATGG TTATGG T
1 TTATGG TTATGG TTATGG TTATGG T
13072637 GGAGGGAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (6 bp):
TTATGG
Found at i:13074593 original size:3 final size:3
Alignment explanation
Indices: 13074585--13074627 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
13074575 GCATACTTCC
* * * *
13074585 TAA TAA TAA TGA TAA TGA TGA TAA TAA TAG TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
13074628 GTGTTCCTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:13078051 original size:35 final size:35
Alignment explanation
Indices: 13078005--13078080 Score: 152
Period size: 35 Copynumber: 2.2 Consensus size: 35
13077995 CTTTTCGTGT
13078005 ATATTGTATTGGGCTAATATAATATTTAATATATG
1 ATATTGTATTGGGCTAATATAATATTTAATATATG
13078040 ATATTGTATTGGGCTAATATAATATTTAATATATG
1 ATATTGTATTGGGCTAATATAATATTTAATATATG
13078075 ATATTG
1 ATATTG
13078081 ATTTTAAATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (35 bp):
ATATTGTATTGGGCTAATATAATATTTAATATATG
Found at i:13078118 original size:12 final size:12
Alignment explanation
Indices: 13078094--13078143 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
13078084 TTAAATGCTT
13078094 AATTTGATATTTA
1 AATTT-ATATTTA
*
13078107 AATTTATTTTTA
1 AATTTATATTTA
**
13078119 AATTGGTATTTA
1 AATTTATATTTA
*
13078131 AATTTAAATTTA
1 AATTTATATTTA
13078143 A
1 A
13078144 TGTTTAATTT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
12 25 0.83
13 5 0.17
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (12 bp):
AATTTATATTTA
Found at i:13078142 original size:24 final size:24
Alignment explanation
Indices: 13078083--13078143 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
13078073 TGATATTGAT
*
13078083 TTTAAATGCTTAATTTGATATTTAAA
1 TTTAAAT--TTAAATTGATATTTAAA
** *
13078109 TTTATTTTTAAATTGGTATTTAAA
1 TTTAAATTTAAATTGATATTTAAA
13078133 TTTAAATTTAA
1 TTTAAATTTAA
13078144 TGTTTAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 24 0.83
26 5 0.17
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.54
Consensus pattern (24 bp):
TTTAAATTTAAATTGATATTTAAA
Found at i:13078650 original size:9 final size:9
Alignment explanation
Indices: 13078636--13078669 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
13078626 TTAATGATAC
13078636 AATCAATTT
1 AATCAATTT
13078645 AATCAATTT
1 AATCAATTT
* *
13078654 AATAAATTA
1 AATCAATTT
13078663 AATCAAT
1 AATCAAT
13078670 AAAAAATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (9 bp):
AATCAATTT
Found at i:13078678 original size:16 final size:16
Alignment explanation
Indices: 13078667--13078702 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
13078657 AAATTAAATC
13078667 AATAAAAAATTATAAA
1 AATAAAAAATTATAAA
13078683 AATAAAAAATATATATAA
1 AATAAAAAAT-TATA-AA
13078701 AA
1 AA
13078703 AATTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.56
17 4 0.22
18 4 0.22
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (16 bp):
AATAAAAAATTATAAA
Found at i:13082730 original size:95 final size:95
Alignment explanation
Indices: 13082616--13082793 Score: 277
Period size: 95 Copynumber: 1.9 Consensus size: 95
13082606 CTTTTTTATA
* * * *
13082616 AACACACTCGGTGCCATTCACGACTACAAC-AAAGAATGAATTATTCTTCATTTTAAATTCAATG
1 AACACACTCGGTCCCATTCACGACTACAACAAAAGAACGAATTATTCTT-AATATAAATTCAATG
13082680 CAAACGCAACGCATCTTCAGGAGATTCATAG
65 CAAACGCAACGCATCTTCAGGAGATTCATAG
* * *
13082711 AACACATTCGGTCCCATTCACGAGTACGACAAAAGAACGAATTATTCTTAATATAAATTCAATGC
1 AACACACTCGGTCCCATTCACGACTACAACAAAAGAACGAATTATTCTTAATATAAATTCAATGC
13082776 AAACGCAACGCATCTTCA
66 AAACGCAACGCATCTTCA
13082794 TCAGATATAT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
95 58 0.77
96 17 0.23
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25
Consensus pattern (95 bp):
AACACACTCGGTCCCATTCACGACTACAACAAAAGAACGAATTATTCTTAATATAAATTCAATGC
AAACGCAACGCATCTTCAGGAGATTCATAG
Found at i:13084778 original size:17 final size:16
Alignment explanation
Indices: 13084752--13084791 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
13084742 TATCATTAGT
13084752 AATTTAAAATTTTATA
1 AATTTAAAATTTTATA
*
13084768 AATTATAAAATTTTATC
1 AATT-TAAAATTTTATA
13084785 AATTTAA
1 AATTTAA
13084792 GAGGTCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
AATTTAAAATTTTATA
Found at i:13097085 original size:21 final size:21
Alignment explanation
Indices: 13097046--13097086 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
13097036 CCACAAGAAA
* * *
13097046 CCTCTTTATAAATATATTTCT
1 CCTCTTTACAAAGAGATTTCT
13097067 CCTCTTTACAAAGAGATTTC
1 CCTCTTTACAAAGAGATTTC
13097087 ATAGGGAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44
Consensus pattern (21 bp):
CCTCTTTACAAAGAGATTTCT
Found at i:13098699 original size:23 final size:23
Alignment explanation
Indices: 13098673--13098724 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
13098663 AATTAAAAAG
13098673 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
13098696 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
13098719 ATGAAA
1 ATGAAA
13098725 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:13106468 original size:28 final size:28
Alignment explanation
Indices: 13106413--13106469 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
13106403 TTAACTTATA
* * *
13106413 AAATTATATATCATCAATTCATTGATAT
1 AAATTATATATCATAAATTCAATAATAT
13106441 AAATCTATATAT-ATAAATTCAATAATAT
1 AAAT-TATATATCATAAATTCAATAATAT
13106469 A
1 A
13106470 TATCCAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 18 0.72
29 7 0.28
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (28 bp):
AAATTATATATCATAAATTCAATAATAT
Found at i:13107039 original size:7 final size:7
Alignment explanation
Indices: 13107012--13107051 Score: 64
Period size: 7 Copynumber: 5.7 Consensus size: 7
13107002 TCCATCTTCA
13107012 TGTGATGG
1 TGTGA-GG
13107020 TGTGAGG
1 TGTGAGG
13107027 -GTGAGG
1 TGTGAGG
13107033 TGTGAGG
1 TGTGAGG
13107040 TGTGAGG
1 TGTGAGG
13107047 TGTGA
1 TGTGA
13107052 ATTAAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.19
7 20 0.65
8 5 0.16
ACGTcount: A:0.15, C:0.00, G:0.55, T:0.30
Consensus pattern (7 bp):
TGTGAGG
Found at i:13107043 original size:20 final size:22
Alignment explanation
Indices: 13107012--13107051 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
13107002 TCCATCTTCA
13107012 TGTGATGGTGTGAGG-GTGAGG
1 TGTGATGGTGTGAGGTGTGAGG
13107033 TGTGA-GGTGTGAGGTGTGA
1 TGTGATGGTGTGAGGTGTGA
13107052 ATTAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.15, C:0.00, G:0.55, T:0.30
Consensus pattern (22 bp):
TGTGATGGTGTGAGGTGTGAGG
Found at i:13109021 original size:22 final size:22
Alignment explanation
Indices: 13108961--13109072 Score: 90
Period size: 22 Copynumber: 5.0 Consensus size: 22
13108951 GGGATGTGGG
*
13108961 TTTTTGGTTTTTTGGAGAAGGAT
1 TTTTTTGTTTTTTGGAGAAGG-T
*
13108984 TGTTCTTTG--TTTTGGAGGAGGT
1 T-TT-TTTGTTTTTTGGAGAAGGT
13109006 TTTTTTGTTTTTTGGAG--GTGT
1 TTTTTTGTTTTTTGGAGAAG-GT
13109027 TTTTTTGTTTTTTTGGAAAGAAGGT
1 TTTTTTG-TTTTTTGG--AGAAGGT
*
13109052 TATTTTTGTTTCTTGGA-AAGG
1 T-TTTTTGTTTTTTGGAGAAGG
13109073 CTAATTTTTG
Statistics
Matches: 75, Mismatches: 3, Indels: 23
0.74 0.03 0.23
Matches are distributed among these distances:
20 5 0.07
21 11 0.15
22 22 0.29
23 13 0.17
24 4 0.05
25 13 0.17
26 7 0.09
ACGTcount: A:0.14, C:0.02, G:0.29, T:0.55
Consensus pattern (22 bp):
TTTTTTGTTTTTTGGAGAAGGT
Found at i:13109024 original size:19 final size:21
Alignment explanation
Indices: 13108993--13109039 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
13108983 TTGTTCTTTG
*
13108993 TTTTGGAGGAGGTTTTTTTGTT
1 TTTTGGAGG-TGTTTTTTTGTT
13109015 TTTTGGAGGTGTTTTTTTGTT
1 TTTTGGAGGTGTTTTTTTGTT
13109036 TTTT
1 TTTT
13109040 TGGAAAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.06, C:0.00, G:0.28, T:0.66
Consensus pattern (21 bp):
TTTTGGAGGTGTTTTTTTGTT
Found at i:13109038 original size:20 final size:21
Alignment explanation
Indices: 13108969--13109038 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 21
13108959 GGTTTTTGGT
*
13108969 TTTTTGGAGAAGGATTGTTCTTTG
1 TTTTTGGAGGAGG-TT-TT-TTTG
13108993 -TTTTGGAGGAGGTTTTTTTG
1 TTTTTGGAGGAGGTTTTTTTG
*
13109013 TTTTTTGGAGG-TGTTTTTTTG
1 -TTTTTGGAGGAGGTTTTTTTG
13109034 TTTTT
1 TTTTT
13109039 TTGGAAAGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
20 9 0.21
21 11 0.26
22 11 0.26
23 11 0.26
ACGTcount: A:0.10, C:0.01, G:0.29, T:0.60
Consensus pattern (21 bp):
TTTTTGGAGGAGGTTTTTTTG
Found at i:13109384 original size:3 final size:3
Alignment explanation
Indices: 13109370--13109455 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
13109360 GAGCTTTGTT
* *
13109370 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
13109414 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
13109456 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:13109408 original size:27 final size:27
Alignment explanation
Indices: 13109369--13109455 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
13109359 AGAGCTTTGT
13109369 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
13109396 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
13109421 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
13109447 -TTATATTAT
1 TTTATATTAT
13109456 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:13109430 original size:21 final size:18
Alignment explanation
Indices: 13109370--13109459 Score: 92
Period size: 18 Copynumber: 4.7 Consensus size: 18
13109360 GAGCTTTGTT
*
13109370 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
13109390 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
13109408 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
13109429 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
13109447 TTA-TATTATATAT
1 TTATTATT-TATAT
13109460 GCCCTCTCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.43
19 9 0.15
20 10 0.16
21 12 0.20
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:13111831 original size:5 final size:5
Alignment explanation
Indices: 13111810--13111862 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
13111800 TGTTAAAATA
* *
13111810 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
13111858 TATAT
1 TATAT
13111863 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:13111841 original size:10 final size:9
Alignment explanation
Indices: 13111807--13111863 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
13111797 ATGTGTTAAA
13111807 ATATATATT
1 ATATATATT
*
13111816 AAAT-TATT
1 ATATATATT
13111824 AT-TATATT
1 ATATATATT
13111832 ATAGTATATT
1 ATA-TATATT
13111842 ATAT-TA-T
1 ATATATATT
13111849 ATATTATATT
1 ATA-TATATT
13111859 ATATA
1 ATATA
13111864 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Found at i:13111853 original size:12 final size:12
Alignment explanation
Indices: 13111808--13111863 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
13111798 TGTGTTAAAA
*
13111808 TATATATTAAAT
1 TATATATTATAT
13111820 TAT-TATTATATT
1 TATATATTATA-T
13111832 ATAGTATATTATAT
1 -TA-TATATTATAT
13111846 TATATATTATAT
1 TATATATTATAT
13111858 TATATA
1 TATATA
13111864 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:13113201 original size:18 final size:19
Alignment explanation
Indices: 13113178--13113216 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
13113168 ATATATAGAT
13113178 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
13113196 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
13113215 AT
1 AT
13113217 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:13113566 original size:39 final size:39
Alignment explanation
Indices: 13113456--13113590 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
13113446 GACCTCGAGT
* * * *
13113456 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
13113497 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
13113535 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
13113574 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
13113591 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:13113734 original size:18 final size:19
Alignment explanation
Indices: 13113713--13113753 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
13113703 AATGAAATGA
13113713 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
13113731 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
13113750 GAAA
1 GAAA
13113754 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:13118273 original size:5 final size:5
Alignment explanation
Indices: 13118252--13118304 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
13118242 TGTTAAAATA
* *
13118252 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
13118300 TATAT
1 TATAT
13118305 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:13118283 original size:10 final size:9
Alignment explanation
Indices: 13118249--13118305 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
13118239 ATGTGTTAAA
13118249 ATATATATT
1 ATATATATT
*
13118258 AAAT-TATT
1 ATATATATT
13118266 AT-TATATT
1 ATATATATT
13118274 ATAGTATATT
1 ATA-TATATT
13118284 ATAT-TA-T
1 ATATATATT
13118291 ATATTATATT
1 ATA-TATATT
13118301 ATATA
1 ATATA
13118306 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Done.