Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 40 of 325
Found at i:14740755 original size:43 final size:45
Alignment explanation
Indices: 14740672--14740766 Score: 149
Period size: 43 Copynumber: 2.2 Consensus size: 45
14740662 CAATAGCAGC
* * *
14740672 AACAGTATTCAACACACAAAGTGTTGAATCTGTAATAGTAACGGT
1 AACAGTATTCAACACACAAAGTGTCGAATCGGTAACAGTAACGGT
14740717 AACAGTATTCAACACACAAA-T-TCGAATCGGTAACAGTAACGGT
1 AACAGTATTCAACACACAAAGTGTCGAATCGGTAACAGTAACGGT
14740760 AACAGTA
1 AACAGTA
14740767 ACAGTAGTAG
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 26 0.55
44 1 0.02
45 20 0.43
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (45 bp):
AACAGTATTCAACACACAAAGTGTCGAATCGGTAACAGTAACGGT
Found at i:14740761 original size:12 final size:12
Alignment explanation
Indices: 14740744--14740768 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14740734 AAATTCGAAT
14740744 CGGTAACAGTAA
1 CGGTAACAGTAA
14740756 CGGTAACAGTAA
1 CGGTAACAGTAA
14740768 C
1 C
14740769 AGTAGTAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:14741840 original size:13 final size:13
Alignment explanation
Indices: 14741824--14741875 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
14741814 TCTTTTTTTA
*
14741824 CTTTGTTTTATTT
1 CTTTATTTTATTT
14741837 CTTTATTTTATTT
1 CTTTATTTTATTT
*
14741850 CATTTCTTTTA-TT
1 C-TTTATTTTATTT
14741863 CTTTTATTTTATT
1 C-TTTATTTTATT
14741876 AACTTTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
13 24 0.73
14 9 0.27
ACGTcount: A:0.13, C:0.10, G:0.02, T:0.75
Consensus pattern (13 bp):
CTTTATTTTATTT
Found at i:14742166 original size:20 final size:20
Alignment explanation
Indices: 14742143--14742208 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
14742133 GTCTTTATTT
14742143 TAATTTATTTTTAATAATAA
1 TAATTTATTTTTAATAATAA
* *
14742163 TAA-TCATAATTTAATAAT-A
1 TAATTTAT-TTTTAATAATAA
*
14742182 TAAATTATTATTTAATAGAATAA
1 TAATTTATT-TTTAAT--AATAA
14742205 TAAT
1 TAAT
14742209 AATAAATAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
19 7 0.20
20 21 0.60
22 3 0.09
23 4 0.11
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (20 bp):
TAATTTATTTTTAATAATAA
Found at i:14742267 original size:37 final size:35
Alignment explanation
Indices: 14742168--14742270 Score: 91
Period size: 36 Copynumber: 2.8 Consensus size: 35
14742158 AATAATAATC
* * *
14742168 ATAATTTAATAATATAAATTATTATTTAATAGAATAATA
1 ATAA-TTAATAAT-TAAATTA-TATATATTA-AATAAAA
* *
14742207 ATAATAAATAA-TAAATATCTATATACTTAAATAAAA
1 ATAATTAATAATTAAAT-TATATATA-TTAAATAAAA
14742243 AGTAATTAATAATTAAATTATATATATT
1 A-TAATTAATAATTAAATTATATATATT
14742271 TACATAATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
36 19 0.36
37 19 0.36
38 11 0.21
39 4 0.08
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (35 bp):
ATAATTAATAATTAAATTATATATATTAAATAAAA
Found at i:14742810 original size:31 final size:33
Alignment explanation
Indices: 14742774--14742840 Score: 102
Period size: 31 Copynumber: 2.1 Consensus size: 33
14742764 AGCGGTTAGA
*
14742774 GGATTTACTTAGGGTAT-TTTT-GCTGCTATGG
1 GGATTTACTTAGGGTATGTTTTGGCTACTATGG
*
14742805 GGATTTACTTAGGGTTTGTTTTGGCTACTATGG
1 GGATTTACTTAGGGTATGTTTTGGCTACTATGG
14742838 GGA
1 GGA
14742841 ATATTAAGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 16 0.50
32 4 0.12
33 12 0.38
ACGTcount: A:0.16, C:0.09, G:0.31, T:0.43
Consensus pattern (33 bp):
GGATTTACTTAGGGTATGTTTTGGCTACTATGG
Found at i:14743360 original size:19 final size:20
Alignment explanation
Indices: 14743336--14743377 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
14743326 GGTTAGATCA
14743336 TTGTTT-TAAAATTCA-TATT
1 TTGTTTATAAAA-TCATTATT
14743355 TTGTTTATAAAATCATTATT
1 TTGTTTATAAAATCATTATT
14743375 TTG
1 TTG
14743378 AAAGTCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57
Consensus pattern (20 bp):
TTGTTTATAAAATCATTATT
Found at i:14743538 original size:19 final size:20
Alignment explanation
Indices: 14743511--14743549 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
14743501 ATAAATAATT
* *
14743511 ATTTTTAAATTTAT-ATATG
1 ATTTATAAATCTATGATATG
14743530 ATTTATAAATCTATGATATG
1 ATTTATAAATCTATGATATG
14743550 TATGGTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTTATAAATCTATGATATG
Found at i:14744294 original size:128 final size:129
Alignment explanation
Indices: 14744135--14744370 Score: 377
Period size: 128 Copynumber: 1.8 Consensus size: 129
14744125 GAAGATTCAT
* * * *
14744135 TAAAACAAAGGCAATATTCGATGTTTGGAAATTCGGTGAATAGTGCCCTATCGTGCTGGGTTTCG
1 TAAAACAAAGGCAATATTCGATGTTTCGAAATTCGGGGAATAGCGCCCTATCGTACTGGGTTTCG
*
14744200 ATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTTTCTTGTGTTTTTCCAAACGC
66 ATTTCCCGTTTGTTCAAAAAAATCGAATATTCCTTTAGAATTTTTCTTGTGTTTTTCCAAACGC
*
14744264 TAAAAC-AAGGCAATA-TCTGATGTTTCGAAATTCGGGGAATAGCGCCCTATGGTACTGGGTTTC
1 TAAAACAAAGGCAATATTC-GATGTTTCGAAATTCGGGGAATAGCGCCCTATCGTACTGGGTTTC
* *
14744327 GATTTCTCGTTTGTTCAAAAAAATCGAATATTCCTTTGGAATTT
65 GATTTCCCGTTTGTTCAAAAAAATCGAATATTCCTTTAGAATTT
14744371 CACTCGTGTT
Statistics
Matches: 98, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
127 2 0.02
128 90 0.92
129 6 0.06
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (129 bp):
TAAAACAAAGGCAATATTCGATGTTTCGAAATTCGGGGAATAGCGCCCTATCGTACTGGGTTTCG
ATTTCCCGTTTGTTCAAAAAAATCGAATATTCCTTTAGAATTTTTCTTGTGTTTTTCCAAACGC
Found at i:14747202 original size:50 final size:51
Alignment explanation
Indices: 14747125--14747253 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
14747115 GACCATGGCA
* *
14747125 ACAAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
14747176 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
14747226 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
14747254 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:14747326 original size:62 final size:61
Alignment explanation
Indices: 14747229--14747464 Score: 304
Period size: 62 Copynumber: 3.9 Consensus size: 61
14747219 ACAAATGACA
*
14747229 AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCT-ATC
*
14747291 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCT-ATC
* * **
14747353 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTGGTAACTC---C-GGCTA-C
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCTATC
* * * * *
14747409 AGTAAAAAATGGTAGC-TCAGGCTACCTGATCAGTGAATAGTGGTAGCTTTAGCTAC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTAC
14747465 AAGTGACAAG
Statistics
Matches: 155, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
55 2 0.01
56 42 0.27
57 1 0.01
58 2 0.01
59 2 0.01
62 106 0.68
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (61 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCTAGCTACCTATC
Found at i:14747421 original size:25 final size:25
Alignment explanation
Indices: 14747383--14747433 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
14747373 GCTACCTGAT
* * *
14747383 CAGTGAAAAGTGGTAACTCCGGCTA
1 CAGTAAAAAATGGTAACTCAGGCTA
*
14747408 CAGTAAAAAATGGTAGCTCAGGCTA
1 CAGTAAAAAATGGTAACTCAGGCTA
14747433 C
1 C
14747434 CTGATCAGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (25 bp):
CAGTAAAAAATGGTAACTCAGGCTA
Found at i:14747464 original size:31 final size:31
Alignment explanation
Indices: 14747229--14747464 Score: 265
Period size: 31 Copynumber: 7.8 Consensus size: 31
14747219 ACAAATGACA
14747229 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
14747260 AGTGAAAAATGGTAGC-TCTAGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTC-AGCTACCTGATC
*
14747291 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
14747322 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-AGCTACCTGATC
*
14747353 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* **
14747384 AGTGAAAAGTGGTAAC-TC--C-GGCT-A-C
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
14747409 AGTAAAAAATGGTAGC-TCAGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCA-GCTACCTGATC
* *
14747440 AGTGAATAGTGGTAGCTTTAGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTAC
14747465 AAGTGACAAG
Statistics
Matches: 175, Mismatches: 19, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
25 16 0.09
26 1 0.01
27 2 0.01
28 2 0.01
29 2 0.01
30 7 0.04
31 139 0.79
32 6 0.03
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:14747560 original size:47 final size:47
Alignment explanation
Indices: 14747490--14747661 Score: 163
Period size: 47 Copynumber: 3.6 Consensus size: 47
14747480 AGTGATTTCC
* *
14747490 GTATAAGACCAT-GTCTGGCATATGGCATCGGTGTGATATATGATACT
1 GTATAAGACCATAG-CTGGGATATGGCATCGGTGTGATATGTGATACT
* * * *
14747537 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTC-
1 GTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACT
* * * *
14747583 GTGTAAGACCATAGATGGGCTATGGCATCGATATGTGATATGTGATTACAT
1 GTATAAGACCATAGCTGGGATATGGCATCG--GTGTGATATGTGA-TAC-T
* *
14747634 G--TAAGGCCATAGCTGGGCTATGGCATCG
1 GTATAAGACCATAGCTGGGATATGGCATCG
14747662 ATATATGAAT
Statistics
Matches: 103, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 25 0.24
47 39 0.38
48 11 0.11
49 27 0.26
51 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (47 bp):
GTATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACT
Found at i:14747644 original size:49 final size:48
Alignment explanation
Indices: 14747540--14747665 Score: 157
Period size: 49 Copynumber: 2.6 Consensus size: 48
14747530 TGATACTGTA
** * * * *
14747540 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGATGGGCTATGGCATCGATATGTGATATGTGATTCATG
14747586 TAAGACCATAGATGGGCTATGGCATCGATATGTGATATGTGATTACATG
1 TAAGACCATAGATGGGCTATGGCATCGATATGTGATATGTGATT-CATG
* *
14747635 TAAGGCCATAGCTGGGCTATGGCATCGATAT
1 TAAGACCATAGATGGGCTATGGCATCGATAT
14747666 ATGAATATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
46 23 0.33
47 1 0.01
48 13 0.19
49 32 0.46
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (48 bp):
TAAGACCATAGATGGGCTATGGCATCGATATGTGATATGTGATTCATG
Found at i:14747678 original size:42 final size:42
Alignment explanation
Indices: 14747632--14747729 Score: 126
Period size: 42 Copynumber: 2.3 Consensus size: 42
14747622 ATGTGATTAC
* *
14747632 ATGTAAGGCCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 ATGTAAGACCATAGCTAGGCTATGGCATC-ATTATATGAATAT
* * *
14747674 ATGTAAAACCATAGCTAGGTTATGGCATCATTATGTGAATAT
1 ATGTAAGACCATAGCTAGGCTATGGCATCATTATATGAATAT
*
14747716 GTGTAAGACCATAG
1 ATGTAAGACCATAG
14747730 TTGAACTATG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.02
42 47 0.98
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (42 bp):
ATGTAAGACCATAGCTAGGCTATGGCATCATTATATGAATAT
Found at i:14752486 original size:13 final size:13
Alignment explanation
Indices: 14752470--14752495 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14752460 CCTTTTCCCC
14752470 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
14752483 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
14752496 TCTCCCCTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTTCTTTCTTTT
Found at i:14754836 original size:19 final size:19
Alignment explanation
Indices: 14754812--14754849 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14754802 TTATATTATT
14754812 ATATTTTGAAATAAATTAA
1 ATATTTTGAAATAAATTAA
14754831 ATATTTTGAAATAAATTAA
1 ATATTTTGAAATAAATTAA
14754850 GAAAAGACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
ATATTTTGAAATAAATTAA
Found at i:14755192 original size:13 final size:13
Alignment explanation
Indices: 14755174--14755199 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14755164 GCAGAGGAGA
14755174 AAAAGAAAGAAAG
1 AAAAGAAAGAAAG
14755187 AAAAGAAAGAAAG
1 AAAAGAAAGAAAG
14755200 GGGAAAAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAAAGAAAGAAAG
Found at i:14760187 original size:50 final size:51
Alignment explanation
Indices: 14760110--14760238 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
14760100 GACCATGGCA
* * *
14760110 ACAAGTGATAAATGATAGTTTCGGCTACACTTATCTGATCAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
14760161 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
14760211 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
14760239 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 46 0.65
51 25 0.35
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:14760244 original size:45 final size:46
Alignment explanation
Indices: 14760112--14760255 Score: 114
Period size: 50 Copynumber: 3.0 Consensus size: 46
14760102 CCATGGCAAC
* * *
14760112 AAGTGATAAA-TGATAGTTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGA-AAAGTGATAGCTTCGGCTA-AC---TCTGATCAATGACAAATGA
*
14760162 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGA
1 AAGTGAAAAGTGATAGCTTCGGCTA-AC---TCTGATCAATGACAAATGA
* * *
14760212 CAAGTGAAAAGTGGTAGCTTCGGCT-AC-CTGATCAGTGAAAAATG
1 -AAGTGAAAAGTGATAGCTTCGGCTAACTCTGATCAATGACAAATG
14760256 GTAGCTCTAG
Statistics
Matches: 84, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
45 15 0.18
49 4 0.05
50 43 0.51
51 22 0.26
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (46 bp):
AAGTGAAAAGTGATAGCTTCGGCTAACTCTGATCAATGACAAATGA
Found at i:14760252 original size:31 final size:31
Alignment explanation
Indices: 14760214--14760517 Score: 463
Period size: 31 Copynumber: 9.8 Consensus size: 31
14760204 ACAAATGACA
14760214 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
14760245 AGTGAAAAATGGTAGC-TCTAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
14760276 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
14760307 AGTGAAAAATGGTAGC-TCTAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
14760338 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
14760369 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
14760400 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
14760431 AATGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
14760462 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
14760493 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
14760518 AAGTGACAAG
Statistics
Matches: 248, Mismatches: 17, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
30 7 0.03
31 233 0.94
32 8 0.03
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:14760696 original size:49 final size:48
Alignment explanation
Indices: 14760546--14760755 Score: 199
Period size: 47 Copynumber: 4.5 Consensus size: 48
14760536 GATTTCCGTA
* * * * * *
14760546 TAAGACCATATCTGGGATATGACATCG-GTGTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGAGTGTGATATGTGATTAC-GTG
* * *
14760593 TAAGATCATATCTGGGAC-ATGGCATC-AGTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGG-CTATGGCATCGAGTGTGATATGTGATTACGTG
14760639 TAAGACCATAGCTGGGCTATGGCATCGATGTGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-GTGTGATATGTGATTACGTG
* *
14760688 TAAGACCATAGCTGGGCTATGGCATCGA---T-ATA--TGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGAGTGTGATATGTGATTACGTG
* *
14760730 TAAGAGCATAGCTGGACTATGGCATC
1 TAAGACCATAGCTGGGCTATGGCATC
14760756 ATTATGTGAA
Statistics
Matches: 142, Mismatches: 14, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
42 32 0.23
44 3 0.02
45 2 0.01
46 24 0.17
47 34 0.24
48 15 0.11
49 32 0.23
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGAGTGTGATATGTGATTACGTG
Found at i:14760731 original size:42 final size:42
Alignment explanation
Indices: 14760685--14760801 Score: 155
Period size: 42 Copynumber: 2.8 Consensus size: 42
14760675 ATGTGATTAC
* *
14760685 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGACTATGGCATCGATATATGAAGAT
* *
14760727 GTGTAAGAGCATAGCTGGACTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGACTATGGCATCGA-TATATGAAGAT
* * *
14760769 GTGTAAGACCATAGTTGAACTATGACATCGATA
1 GTGTAAGACCATAGCTGGACTATGGCATCGATA
14760802 AAACGAAGTA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGACTATGGCATCGATATATGAAGAT
Found at i:14763142 original size:46 final size:46
Alignment explanation
Indices: 14763088--14763215 Score: 193
Period size: 46 Copynumber: 2.8 Consensus size: 46
14763078 ATTTGGGCAT
* *
14763088 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
14763134 TCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
14763180 CCGAGCTCATTGAGTTGAGTCCGAATTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14763216 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:14764733 original size:5 final size:5
Alignment explanation
Indices: 14764712--14764752 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
14764702 TGTTAAAATA
* *
14764712 TATAT TAAAT TATTAT TATAT TATAG TATAT TATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATAT TATAT
14764753 AAATAAGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:14766091 original size:18 final size:19
Alignment explanation
Indices: 14766068--14766106 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
14766058 ATATATAGAT
14766068 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
14766086 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
14766105 AT
1 AT
14766107 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:14766455 original size:39 final size:39
Alignment explanation
Indices: 14766345--14766479 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
14766335 GACCTCGAGT
* * * *
14766345 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
14766386 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
*
14766424 CGATGAGACACTGGGTGTCAAATATTGCTTCGAGCTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
14766463 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
14766480 CCATATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 18 0.24
39 35 0.47
40 5 0.07
41 16 0.22
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:14778410 original size:87 final size:87
Alignment explanation
Indices: 14778258--14778609 Score: 366
Period size: 87 Copynumber: 4.1 Consensus size: 87
14778248 CGGTGAATTC
* * *
14778258 ACAGATCTTGTCTCCCT-AA-AGTTACAGTGGAACAGATCAAAGACGGCAAGCCTTAACCCCTTA
1 ACAGATCTTGTCTCCCTAAACAG-T--AGTGGAACAAATCAAAGACAGCAAGCCTTAACCCCCTA
14778321 AGTAGTAGGGTAACAGGCTGAAGATT
63 AGTAGTAGGGTAACAGG-TGAAGATT
*
14778347 ACAGATCTTGTCTCCCTAAACAGTAGTGGAGCAAATCAAAGA-AGCAAGCCTTAACCCCCTAAGT
1 ACAGATCTTGTCTCCCTAAACAGTAGTGGAACAAATCAAAGACAGCAAGCCTTAACCCCCTAAGT
14778411 AGTAGGGTAACAGGCTGAAGATT
66 AGTAGGGTAACAGG-TGAAGATT
** * * * * * **
14778434 GTAGATCTTGTCTCCCTGAAGCA--ACGTGGAATAGATCAAACAAAGTGAGCCTTAACCCCCTAA
1 ACAGATCTTGTCTCCCT-AAACAGTA-GTGGAACAAATCAAAGACAGCAAGCCTTAACCCCCTAA
*
14778497 GTAGTAGGGTAACAGGT--TG--T
64 GTAGTAGGGTAACAGGTGAAGATT
* * * * **
14778517 --AGATCTTGTCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAACCCCCTAAGT
1 ACAGATCTTGTCTCCCTAAACAGTAGTGGAACAAATCAAAGACAGCAAGCCTTAACCCCCTAAGT
14778580 AGTAGGGTAACAGGTCGAAGATT
66 AGTAGGGTAACAGGT-GAAGATT
14778603 AGCAGAT
1 A-CAGAT
14778610 TTTATCTTCC
Statistics
Matches: 226, Mismatches: 22, Indels: 30
0.81 0.08 0.11
Matches are distributed among these distances:
80 5 0.02
81 63 0.28
82 1 0.00
83 1 0.00
84 1 0.00
85 1 0.00
86 2 0.01
87 72 0.32
88 54 0.24
89 21 0.09
90 3 0.01
91 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (87 bp):
ACAGATCTTGTCTCCCTAAACAGTAGTGGAACAAATCAAAGACAGCAAGCCTTAACCCCCTAAGT
AGTAGGGTAACAGGTGAAGATT
Found at i:14778544 original size:81 final size:81
Alignment explanation
Indices: 14778432--14778594 Score: 231
Period size: 81 Copynumber: 2.0 Consensus size: 81
14778422 AGGCTGAAGA
* *
14778432 TTGTAGATCTTGTCTCCCTGAAGCAACGTGGAATAGATCAAACAAAGTGAGCCTTAACCCCCTAA
1 TTGTAGATCTTGTCTCCCTGAAGCAACGTGGAACAAATCAAACAAAGTGAGCCTTAACCCCCTAA
14778497 GTAGTAGGGTAACAGG
66 GTAGTAGGGTAACAGG
* * * **
14778513 TTGTAGATCTTGTCTCCCT-AAGCAGTA-GTGGAGCAAATCGAAGACGGTGAGCCTTAACCCCCT
1 TTGTAGATCTTGTCTCCCTGAAGCA--ACGTGGAACAAATCAAACAAAGTGAGCCTTAACCCCCT
14778576 AAGTAGTAGGGTAACAGG
64 AAGTAGTAGGGTAACAGG
14778594 T
1 T
14778595 CGAAGATTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 5 0.07
81 67 0.92
82 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (81 bp):
TTGTAGATCTTGTCTCCCTGAAGCAACGTGGAACAAATCAAACAAAGTGAGCCTTAACCCCCTAA
GTAGTAGGGTAACAGG
Found at i:14778712 original size:45 final size:45
Alignment explanation
Indices: 14778612--14778727 Score: 137
Period size: 45 Copynumber: 2.6 Consensus size: 45
14778602 TAGCAGATTT
* * * *
14778612 TATCTTCCTGAAGTTACAGTGGAGC-GGATCAAAATCACAATCCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGGATCAAAATCACAAACCA
* * * *
14778656 TATCTCTCTGAAGCTGCAGTAGAGCAGGAT-AAAATAGACAAACCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGGATCAAAAT-CACAAACCA
14778701 TATCTCCCTGAAGTTGCAGTGGAGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAG
14778728 TTGCAGTAGA
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 25 0.42
45 34 0.58
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (45 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGGATCAAAATCACAAACCA
Found at i:14778731 original size:14 final size:14
Alignment explanation
Indices: 14778712--14778741 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14778702 ATCTCCCTGA
*
14778712 AGTTGCAGTGGAGC
1 AGTTGCAGTAGAGC
14778726 AGTTGCAGTAGAGC
1 AGTTGCAGTAGAGC
14778740 AG
1 AG
14778742 ACTGAAGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.40, T:0.20
Consensus pattern (14 bp):
AGTTGCAGTAGAGC
Found at i:14779384 original size:16 final size:17
Alignment explanation
Indices: 14779363--14779395 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14779353 AAGAAAACAA
*
14779363 TTTTTTTTCT-TTTTCG
1 TTTTTTCTCTGTTTTCG
14779379 TTTTTTCTCTGTTTTCG
1 TTTTTTCTCTGTTTTCG
14779396 GCTATAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.00, C:0.15, G:0.09, T:0.76
Consensus pattern (17 bp):
TTTTTTCTCTGTTTTCG
Found at i:14780389 original size:20 final size:19
Alignment explanation
Indices: 14780349--14780390 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
14780339 GGTTAGATGA
*
14780349 TTGTTTTAAAATTCATCTT
1 TTGTTTTAAAATTCATATT
14780368 TTGTTTATAAAA-TCATTATT
1 TTGTTT-TAAAATTCA-TATT
14780388 TTG
1 TTG
14780391 AAAGTCATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (19 bp):
TTGTTTTAAAATTCATATT
Found at i:14780551 original size:19 final size:20
Alignment explanation
Indices: 14780524--14780562 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
14780514 TTAAATAATT
* *
14780524 ATTTTTAAATTTAT-ATATG
1 ATTTATAAATCTATGATATG
14780543 ATTTATAAATCTATGATATG
1 ATTTATAAATCTATGATATG
14780563 TATGGTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTTATAAATCTATGATATG
Found at i:14780607 original size:15 final size:14
Alignment explanation
Indices: 14780583--14780612 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
14780573 CTCCCTAGAT
14780583 TATATTTCATTATA
1 TATATTTCATTATA
14780597 TATATTTTCATTATA
1 TATA-TTTCATTATA
14780612 T
1 T
14780613 TTTCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (14 bp):
TATATTTCATTATA
Found at i:14781299 original size:128 final size:129
Alignment explanation
Indices: 14781134--14781381 Score: 392
Period size: 128 Copynumber: 1.9 Consensus size: 129
14781124 GAAGATTCGT
** * *
14781134 TAAAACAAAGGCAATATTCGATGTTTGGAAATTCGGGGAATAGTGCCCTATCGTTCTGGGTTTCG
1 TAAAACAAAGGCAATATTCGATGTTTCAAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTTCA
* * *
14781199 ATTTCCCGTTTGTTCAAAATAATCAAATATTCCTTTAGAATTTTACTCGTGTTTTTCCAAACGA
66 ATTTCCCGTTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTCGTATTTTTCCAAACGA
14781263 TAAAAC-AAGGCAATA-TCTGATGTTTCAAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTTC
1 TAAAACAAAGGCAATATTC-GATGTTTCAAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTTC
* *
14781326 AATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTGGAATTTCACTCGTATTTT
65 AATTTCCCGTTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTCGTATTTT
14781382 CTAAAGCAAG
Statistics
Matches: 109, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
127 2 0.02
128 101 0.93
129 6 0.06
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (129 bp):
TAAAACAAAGGCAATATTCGATGTTTCAAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTTCA
ATTTCCCGTTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTCGTATTTTTCCAAACGA
Found at i:14781976 original size:18 final size:19
Alignment explanation
Indices: 14781922--14781978 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 19
14781912 TTCGACACAT
*
14781922 ATATTTAAT-ATTAAATAG
1 ATATTTATTAATTAAATAG
* *
14781940 ATATTTATTATTTTATAAAAG
1 ATATTTATTA-ATTA-AATAG
14781961 ATATTTATTAATTAAATA
1 ATATTTATTAATTAAATA
14781979 ATTATATTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 8 0.26
19 3 0.10
20 6 0.19
21 14 0.45
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (19 bp):
ATATTTATTAATTAAATAG
Found at i:14783717 original size:46 final size:46
Alignment explanation
Indices: 14783660--14784024 Score: 410
Period size: 46 Copynumber: 8.0 Consensus size: 46
14783650 AGTGTGCTCT
* * *
14783660 CTGAAATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
14783706 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
14783752 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
14783798 ATGAAATAAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
14783844 GTGACATGAAAAGAATAAGACTATGGTTGAAAGATACTATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * * *
14783890 ATGA-CGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
14783935 GTAATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGTAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
14783981 CTGACA-GAAAATGAGTAAGACAATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
14784025 TCATGTCGAA
Statistics
Matches: 276, Mismatches: 41, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
45 37 0.13
46 239 0.87
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:14784062 original size:137 final size:137
Alignment explanation
Indices: 14783661--14784054 Score: 364
Period size: 137 Copynumber: 2.9 Consensus size: 137
14783651 GTGTGCTCTC
* ** * * * * **
14783661 TGAAATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGA
1 TGAAATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGA
* * * * * ** * *** **
14783726 CCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCA
66 CAATAGTTGAAAGACACTATGGCAACATGA-CGAGAATAAATAAGACCATGAATGAAAGATACCA
14783791 TGGCAACA
130 TGGCAACA
** * *
14783799 TGAAATAAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACGTGACATGAAAAGAATAAGA
1 TGAAATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGA
* * * * * **
14783864 CTATGGTTGAAAGATACTATGGCAACATGACGGGAATGAATAAGACCATGGTTGAAAGATACCAT
66 CAATAGTTGAAAGACACTATGGCAACATGACGAGAATAAATAAGACCATGAATGAAAGATACCAT
14783929 GGC-A-A
131 GGCAACA
* * *
14783934 TGTAATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGTAACCTGACA-GAAAATGAGTA
1 TG-AA-ATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAA-GAATA
* * *
14783998 AGACAATAGTTGAAAGACACTATGGCATCATGTCGA-AGATAAATAAGACCCTGAATG
63 AGACAATAGTTGAAAGACACTATGGCAACATGACGAGA-ATAAATAAGACCATGAATG
14784055 GGAGATACTA
Statistics
Matches: 217, Mismatches: 35, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
135 3 0.01
136 9 0.04
137 122 0.56
138 83 0.38
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (137 bp):
TGAAATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGA
CAATAGTTGAAAGACACTATGGCAACATGACGAGAATAAATAAGACCATGAATGAAAGATACCAT
GGCAACA
Found at i:14786365 original size:17 final size:17
Alignment explanation
Indices: 14786328--14786366 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
14786318 TTATTTATTC
*
14786328 TATTGTTGGAATTGAAT
1 TATTGTTGGAATTGAAA
14786345 TATTGTTGGAATT-ATAA
1 TATTGTTGGAATTGA-AA
14786362 TATTG
1 TATTG
14786367 AATTGAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (17 bp):
TATTGTTGGAATTGAAA
Found at i:14797349 original size:46 final size:46
Alignment explanation
Indices: 14797122--14797348 Score: 321
Period size: 46 Copynumber: 4.9 Consensus size: 46
14797112 TTTGACATAA
* * * * *
14797122 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * *
14797168 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
14797214 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14797260 TGCCATCGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
14797306 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
14797349 GAGAGCACAC
Statistics
Matches: 167, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 163 0.98
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:14799417 original size:11 final size:11
Alignment explanation
Indices: 14799401--14799448 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
14799391 CTTTATATAC
14799401 TAATAAAATAA
1 TAATAAAATAA
14799412 TAATAAAATATA
1 TAATAAAATA-A
* *
14799424 TTATTAAAATAT
1 -TAATAAAATAA
14799436 TAATAAAATAA
1 TAATAAAATAA
14799447 TA
1 TA
14799449 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 21 0.68
12 1 0.03
13 9 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:14799431 original size:24 final size:24
Alignment explanation
Indices: 14799395--14799450 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
14799385 TTCTTTCTTT
*
14799395 ATATACTAATAAAATAATAATAAA
1 ATATATTAATAAAATAATAATAAA
* *
14799419 ATATATTATTAAAATATTAATAAA
1 ATATATTAATAAAATAATAATAAA
14799443 ATAATATT
1 AT-ATATT
14799451 TATCTAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
ATATATTAATAAAATAATAATAAA
Found at i:14816932 original size:11 final size:11
Alignment explanation
Indices: 14816916--14816944 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
14816906 TATAACTAAA
14816916 ATATTTTTTAT
1 ATATTTTTTAT
14816927 ATATTTTTTAT
1 ATATTTTTTAT
14816938 AT-TTTTT
1 ATATTTTT
14816945 GAATTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
ATATTTTTTAT
Found at i:14817253 original size:17 final size:17
Alignment explanation
Indices: 14817231--14817275 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
14817221 CATTTTAATT
*
14817231 TGTATGAATTCTTGTTA
1 TGTATGGATTCTTGTTA
14817248 TGTATGGATTCTTGTTA
1 TGTATGGATTCTTGTTA
14817265 TGTATGGATTC
1 TGTATGGATTC
14817276 AAACCCGTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.20, C:0.07, G:0.22, T:0.51
Consensus pattern (17 bp):
TGTATGGATTCTTGTTA
Found at i:14822246 original size:21 final size:20
Alignment explanation
Indices: 14822213--14822251 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
14822203 TTTTGAGCTT
*
14822213 TTTAATGAGAATTTCTAAATA
1 TTTAATGAAAATTT-TAAATA
*
14822234 TTTAATTAAAATTTTAAA
1 TTTAATGAAAATTTTAAA
14822252 AAATTTCCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (20 bp):
TTTAATGAAAATTTTAAATA
Found at i:14827230 original size:5 final size:5
Alignment explanation
Indices: 14827220--14827253 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
14827210 TTGACAAAAC
14827220 CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCT
1 CTCTT CTCTT CTCTT CTCTT CTCTT CTCTT CTCT
14827254 GCTTTTCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (5 bp):
CTCTT
Found at i:14827261 original size:15 final size:15
Alignment explanation
Indices: 14827220--14827261 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
14827210 TTGACAAAAC
*
14827220 CTCTTCTCTTCTCTT
1 CTCTGCTCTTCTCTT
*
14827235 CTCTTCTCTTCTCTT
1 CTCTGCTCTTCTCTT
*
14827250 CTCTGCTTTTCT
1 CTCTGCTCTTCT
14827262 TACTTTTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.00, C:0.38, G:0.02, T:0.60
Consensus pattern (15 bp):
CTCTGCTCTTCTCTT
Found at i:14832388 original size:60 final size:60
Alignment explanation
Indices: 14832315--14832434 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
14832305 CAAGATAAGC
14832315 GTTTTTAACACTCCCAATTTTCAACTTGTGGAATAGTTAATCTATGATGGGATCCATCTG
1 GTTTTTAACACTCCCAATTTTCAACTTGTGGAATAGTTAATCTATGATGGGATCCATCTG
14832375 GTTTTTAACACTCCCAATTTTCAACTTGTGGAATAGTTAATCTATGATGGGATCCATCTG
1 GTTTTTAACACTCCCAATTTTCAACTTGTGGAATAGTTAATCTATGATGGGATCCATCTG
14832435 AGAAATTTTC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (60 bp):
GTTTTTAACACTCCCAATTTTCAACTTGTGGAATAGTTAATCTATGATGGGATCCATCTG
Found at i:14837306 original size:15 final size:16
Alignment explanation
Indices: 14837288--14837326 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
14837278 CATTCCCAGC
14837288 AATCATATTCCAGT-G
1 AATCATATTCCAGTGG
* *
14837303 AATCACATTCCATTGG
1 AATCATATTCCAGTGG
14837319 AATCATAT
1 AATCATAT
14837327 CATAGAAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (16 bp):
AATCATATTCCAGTGG
Found at i:14837323 original size:16 final size:15
Alignment explanation
Indices: 14837269--14837314 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
14837259 TTAACTTCCT
14837269 CAGT-AATCACATTCC
1 CAGTGAATCACATT-C
* *
14837284 CAG-CAATCATATTC
1 CAGTGAATCACATTC
14837298 CAGTGAATCACATTC
1 CAGTGAATCACATTC
14837313 CA
1 CA
14837315 TTGGAATCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 22 0.85
ACGTcount: A:0.35, C:0.30, G:0.09, T:0.26
Consensus pattern (15 bp):
CAGTGAATCACATTC
Found at i:14838805 original size:29 final size:30
Alignment explanation
Indices: 14838771--14838832 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
14838761 ATTTATTTTA
14838771 TTGTTAA-TTTTTTATTATTTTA-AAGACAT
1 TTGTTAATTTTTTTATTATTTTAGAAG-CAT
14838800 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTTTTATTATTTTAGAAGCAT
14838830 TTG
1 TTG
14838833 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 7 0.23
30 21 0.68
31 3 0.10
ACGTcount: A:0.27, C:0.03, G:0.10, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTTTTATTATTTTAGAAGCAT
Found at i:14842811 original size:16 final size:16
Alignment explanation
Indices: 14842774--14842812 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
14842764 AACCGAATAA
14842774 AATTTTAATTTTTTAT
1 AATTTTAATTTTTTAT
14842790 AA-TTT-ATATTTTTAT
1 AATTTTAAT-TTTTTAT
14842805 AATTTTAA
1 AATTTTAA
14842813 AAAATTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
14 2 0.10
15 12 0.60
16 5 0.25
17 1 0.05
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
AATTTTAATTTTTTAT
Found at i:14842845 original size:29 final size:30
Alignment explanation
Indices: 14842789--14842860 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
14842779 TAATTTTTTA
*
14842789 TAAT-TTATATTTTTATAATTTTAAAAAATT
1 TAATATTAAATTTTTATAATTTTAAAAAA-T
14842819 TAA-ATTAAATTTTTATAATTTT-AAAAAT
1 TAATATTAAATTTTTATAATTTTAAAAAAT
*
14842847 TAATATTTAATTTT
1 TAATATTAAATTTT
14842861 ATCTTAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
28 4 0.11
29 14 0.37
30 20 0.53
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (30 bp):
TAATATTAAATTTTTATAATTTTAAAAAAT
Found at i:14850024 original size:102 final size:102
Alignment explanation
Indices: 14849848--14850051 Score: 390
Period size: 102 Copynumber: 2.0 Consensus size: 102
14849838 ACCATGCCCC
*
14849848 TTGGACTCCATAATATTACTACCATCTGCATTGAAGGAAAACTCAATCAAAATGACAAGAAATAA
1 TTGGACTCCATAATATTACTACCATCTGCATTGAAGAAAAACTCAATCAAAATGACAAGAAATAA
14849913 CCATCATTTCCGGTCAGACTATGAAATAGCCTTTAAT
66 CCATCATTTCCGGTCAGACTATGAAATAGCCTTTAAT
14849950 TTGGACTCCATAATATTACTACCATCTGCATTGAAGAAAAACTCAATCAAAATGACAAGAAATAA
1 TTGGACTCCATAATATTACTACCATCTGCATTGAAGAAAAACTCAATCAAAATGACAAGAAATAA
*
14850015 CCATCATTTCTGGTCAGACTATGAAATAGCCTTTAAT
66 CCATCATTTCCGGTCAGACTATGAAATAGCCTTTAAT
14850052 CAGATCTTAT
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (102 bp):
TTGGACTCCATAATATTACTACCATCTGCATTGAAGAAAAACTCAATCAAAATGACAAGAAATAA
CCATCATTTCCGGTCAGACTATGAAATAGCCTTTAAT
Found at i:14853487 original size:22 final size:22
Alignment explanation
Indices: 14853459--14853527 Score: 120
Period size: 22 Copynumber: 3.1 Consensus size: 22
14853449 TTTGAGATTT
*
14853459 ATTAGGCACTAGAATGCCTTTG
1 ATTAGGCATTAGAATGCCTTTG
14853481 ATTAGGCATTAGAATGCCTTTG
1 ATTAGGCATTAGAATGCCTTTG
*
14853503 ATTAGGCATTAGAATGCCTCTG
1 ATTAGGCATTAGAATGCCTTTG
14853525 ATT
1 ATT
14853528 GGGGCGTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (22 bp):
ATTAGGCATTAGAATGCCTTTG
Found at i:14859993 original size:44 final size:44
Alignment explanation
Indices: 14859913--14860046 Score: 189
Period size: 44 Copynumber: 3.0 Consensus size: 44
14859903 ATCCCGTCTT
* * *
14859913 TGTAA-CTTAACCATGTTTACGTGAAAAGTAATGGAGCCCATTAC
1 TGTAATCTTAACCATATTTACGT-AAAACTAACGGAGCCCATTAC
* *
14859957 TGTAATCTTAACCGTATTTAAGTAAAACTAACGGAGCCCATTAC
1 TGTAATCTTAACCATATTTACGTAAAACTAACGGAGCCCATTAC
* *
14860001 TGTAATCTCAACCATATTTACGTAAAACTAACGGAGCCAATTAC
1 TGTAATCTTAACCATATTTACGTAAAACTAACGGAGCCCATTAC
14860045 TG
1 TG
14860047 ATTTTAACAG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
44 66 0.82
45 14 0.17
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (44 bp):
TGTAATCTTAACCATATTTACGTAAAACTAACGGAGCCCATTAC
Found at i:14870349 original size:32 final size:32
Alignment explanation
Indices: 14870291--14870354 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
14870281 AAAAAATTCA
* * *
14870291 TTGTTGTTTTGTTGCTATTTGCTGTTATTTTG
1 TTGTTGTCTTGTTGCGATTTGATGTTATTTTG
14870323 TTGTTGTCTT-TTGCGATTTTGATGTTATTTTG
1 TTGTTGTCTTGTTGCGA-TTTGATGTTATTTTG
14870355 CTGCCGTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.08, C:0.06, G:0.22, T:0.64
Consensus pattern (32 bp):
TTGTTGTCTTGTTGCGATTTGATGTTATTTTG
Found at i:14874401 original size:52 final size:47
Alignment explanation
Indices: 14874306--14874512 Score: 161
Period size: 47 Copynumber: 4.3 Consensus size: 47
14874296 CCATGGCAAC
* * *
14874306 ATGTGAAATGTGATTTCCGTATAAGACCATAGTTGGGCA-ATGGCTTCGGAG
1 ATGTGATATGTG-CTTCCGTATAAGACCATA-TTGGG-ATATGGCATC-G-G
*
14874357 AAATGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
1 --ATGTGATATGTGCTTCCGTATAAGACCATAT-TGGGATATGGCATCGG
* * *
14874407 -TGTGATATGTGCTACTGTATAAGACCATATATGGGATATGGCATCAG
1 ATGTGATATGTGCTTCCGTATAAGACCATAT-TGGGATATGGCATCGG
* * * ** * *
14874454 -TGTGATACGTG-ATCCGTGTAAGACCATGGCTGGGCTATGGCCTCGG
1 ATGTGATATGTGCTTCCGTATAAGACCAT-ATTGGGATATGGCATCGG
14874500 TATGTGATATGTG
1 -ATGTGATATGTG
14874513 ACTATGTGCA
Statistics
Matches: 129, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
46 25 0.19
47 52 0.40
48 10 0.08
50 1 0.01
51 3 0.02
52 27 0.21
53 11 0.09
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATATGTGCTTCCGTATAAGACCATATTGGGATATGGCATCGG
Found at i:14874429 original size:47 final size:47
Alignment explanation
Indices: 14874360--14874512 Score: 173
Period size: 47 Copynumber: 3.2 Consensus size: 47
14874350 TTCGGAGAAA
* *
14874360 TGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
1 TGTGATATGTGCTACCGTATAAGACCATATCTGGGATATGGCATCGG
* * *
14874407 TGTGATATGTGCTACTGTATAAGACCATATATGGGATATGGCATCAG
1 TGTGATATGTGCTACCGTATAAGACCATATCTGGGATATGGCATCGG
* * * ** * *
14874454 TGTGATACGTGAT-CCGTGTAAGACCATGGCTGGGCTATGGCCTCGG
1 TGTGATATGTGCTACCGTATAAGACCATATCTGGGATATGGCATCGG
14874500 TATGTGATATGTG
1 --TGTGATATGTG
14874513 ACTATGTGCA
Statistics
Matches: 88, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
46 25 0.28
47 53 0.60
48 10 0.11
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (47 bp):
TGTGATATGTGCTACCGTATAAGACCATATCTGGGATATGGCATCGG
Found at i:14878356 original size:47 final size:47
Alignment explanation
Indices: 14878248--14878357 Score: 125
Period size: 47 Copynumber: 2.3 Consensus size: 47
14878238 CGGGATAAGA
* * *
14878248 ACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTAC
1 ACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTAC
* * * *
14878295 ACAAAGTACTTCATCGGAACAAATCTGAAACTTTAACAGTAGTCG-AC
1 ACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTAC
14878342 ACATAGTG-TCTCATCG
1 ACATAGTGCT-TCATCG
14878358 ACTCAATGTC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.02
47 49 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (47 bp):
ACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTAC
Found at i:14884295 original size:16 final size:15
Alignment explanation
Indices: 14884270--14884307 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
14884260 ACAAAATTTG
14884270 AAAGAAAAAGAAAGAA
1 AAAGAAAAAG-AAGAA
*
14884286 AAAGAGAAAGAAGAA
1 AAAGAAAAAGAAGAA
14884301 AAAGAAA
1 AAAGAAA
14884308 GAGACCCGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAGAAGAA
Found at i:14884301 original size:19 final size:18
Alignment explanation
Indices: 14884272--14884311 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
14884262 AAAATTTGAA
14884272 AGAAAAAGAAAGAA-AAAG
1 AGAAAAAGAAA-AAGAAAG
14884290 AGAAAGAAGAAAAAGAAAG
1 AGAAA-AAGAAAAAGAAAG
14884309 AGA
1 AGA
14884312 CCCGTGGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (18 bp):
AGAAAAAGAAAAAGAAAG
Found at i:14885719 original size:21 final size:21
Alignment explanation
Indices: 14885693--14885735 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
14885683 GCAGGTTAGG
14885693 TACTTAACTTTTAATCACCGA
1 TACTTAACTTTTAATCACCGA
14885714 TACTTAACTTTTAATCACCGA
1 TACTTAACTTTTAATCACCGA
14885735 T
1 T
14885736 TCAGCATCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (21 bp):
TACTTAACTTTTAATCACCGA
Found at i:14893567 original size:13 final size:13
Alignment explanation
Indices: 14893549--14893575 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14893539 GATATAGGAT
14893549 CACTTATGTTCGC
1 CACTTATGTTCGC
14893562 CACTTATGTTCGC
1 CACTTATGTTCGC
14893575 C
1 C
14893576 TAAATGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.15, T:0.37
Consensus pattern (13 bp):
CACTTATGTTCGC
Found at i:14907213 original size:26 final size:25
Alignment explanation
Indices: 14907184--14907243 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
14907174 TCATACATCT
*
14907184 TTTAATATCATT-TTAAATAATAATAA
1 TTTAATAT-ATTATTAAAAAATAA-AA
14907210 TTTAATATATTAATTAAAAAATAAAA
1 TTTAATATATT-ATTAAAAAATAAAA
*
14907236 TTAAATAT
1 TTTAATAT
14907244 GAAAAAAGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 3 0.10
26 17 0.57
27 10 0.33
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (25 bp):
TTTAATATATTATTAAAAAATAAAA
Found at i:14911263 original size:13 final size:13
Alignment explanation
Indices: 14911230--14911256 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14911220 CCAGTCAATC
14911230 ATTCAAAGCATAA
1 ATTCAAAGCATAA
14911243 ATTCAAAGCATAA
1 ATTCAAAGCATAA
14911256 A
1 A
14911257 ATTAAAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (13 bp):
ATTCAAAGCATAA
Found at i:14915664 original size:30 final size:30
Alignment explanation
Indices: 14915625--14915681 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
14915615 TTTTATAAGT
14915625 AATTAATATTT-A-TTACTTTAAAATATTTAA
1 AATTAATATTTCATTTA--TTAAAATATTTAA
*
14915655 AATTTATATTTCATTTATTAAAATATT
1 AATTAATATTTCATTTATTAAAATATT
14915682 AACAACAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 20 0.83
31 1 0.04
32 3 0.12
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (30 bp):
AATTAATATTTCATTTATTAAAATATTTAA
Found at i:14921953 original size:26 final size:26
Alignment explanation
Indices: 14921910--14922016 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14921900 TGGTACAAAT
14921910 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14921935 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14921961 TAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14921987 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14922013 TGAT
1 TGAT
14922017 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
25 7 0.09
26 68 0.91
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14923725 original size:54 final size:54
Alignment explanation
Indices: 14923638--14923777 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 54
14923628 GGAAGCGTCT
*
14923638 TGGTGGCTATGCCACGATTATCTGATCTAGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
*
14923692 TGGTGCCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
* *
14923746 TGGTGGCTCTGCCAC-AATATCTGTATCTGGTG
1 TGGTGGCTATGCCACGATTATCTG-ATCTGGTG
14923778 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
TGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
Found at i:14923773 original size:32 final size:27
Alignment explanation
Indices: 14923638--14923777 Score: 178
Period size: 27 Copynumber: 5.2 Consensus size: 27
14923628 GGAAGCGTCT
*
14923638 TGGTGGCTATGCCACGAT-TATCTGATC
1 TGGTGGCTCTGCCAC-ATATATCTGATC
* *
14923665 TAGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACATATATCTGATC
* *
14923692 TGGTGCCTATGCCACGAT-TATCTGATC
1 TGGTGGCTCTGCCAC-ATATATCTGATC
*
14923719 TGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACATATATCTGATC
14923746 TGGTGGCTCTGCCACA-ATATCTGTATC
1 TGGTGGCTCTGCCACATATATCTG-ATC
14923773 TGGTG
1 TGGTG
14923778 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 11 0.11
27 85 0.87
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (27 bp):
TGGTGGCTCTGCCACATATATCTGATC
Found at i:14923788 original size:27 final size:27
Alignment explanation
Indices: 14923638--14923794 Score: 162
Period size: 27 Copynumber: 5.8 Consensus size: 27
14923628 GGAAGCGTCT
* *
14923638 TGGTGGCTATGCCACGATTATCTG-ATC
1 TGGTGGCTCTGCCAC-AATATCTGTATC
*
14923665 TAGTGGCTCTGCCACATATATCTGT-TC
1 TGGTGGCTCTGCCACA-ATATCTGTATC
* * *
14923692 TGGTGCCTATGCCACGATTATCTG-ATC
1 TGGTGGCTCTGCCAC-AATATCTGTATC
14923719 TGGTGGCTCTGCCACATATATCTGT-TC
1 TGGTGGCTCTGCCACA-ATATCTGTATC
14923746 TGGTGGCTCTGCCACAATATCTGTATC
1 TGGTGGCTCTGCCACAATATCTGTATC
* *
14923773 TGGTGACT-TCGTCACAATATCT
1 TGGTGGCTCT-GCCACAATATCT
14923795 AGCAGCCTCG
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
26 11 0.10
27 98 0.89
28 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATATCTGTATC
Found at i:14930384 original size:7 final size:7
Alignment explanation
Indices: 14930372--14930397 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14930362 ATCATCTCCT
14930372 TCATCAC
1 TCATCAC
14930379 TCATCAC
1 TCATCAC
14930386 TCATCAC
1 TCATCAC
14930393 TCATC
1 TCATC
14930398 TGAAAGCAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.42, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCAC
Found at i:14937662 original size:20 final size:21
Alignment explanation
Indices: 14937624--14937663 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14937614 AATAATATTA
*
14937624 TTAAAAAAATAATTACAAAAT
1 TTAAAAAAATAATCACAAAAT
*
14937645 TTAAAAAAA-AATCGCAAAA
1 TTAAAAAAATAATCACAAAA
14937664 CATATATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.68, C:0.07, G:0.03, T:0.23
Consensus pattern (21 bp):
TTAAAAAAATAATCACAAAAT
Found at i:14937978 original size:22 final size:23
Alignment explanation
Indices: 14937942--14937995 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
14937932 AGATTTGACG
*
14937942 TTTAAA-AAATATTA-TGTTAATA
1 TTTAAATAAATATTATTATTAA-A
*
14937964 TTTATATAAAT-TTATTATTAAA
1 TTTAAATAAATATTATTATTAAA
14937986 TTTAAATAAA
1 TTTAAATAAA
14937996 ATAACTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TTTAAATAAATATTATTATTAAA
Found at i:14968413 original size:38 final size:39
Alignment explanation
Indices: 14968329--14968463 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
14968319 ACCAATATGG
*
14968329 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
14968368 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
14968406 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
14968447 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
14968464 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:14970726 original size:11 final size:11
Alignment explanation
Indices: 14970712--14970752 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
14970702 TATTTTCTCC
14970712 CTATTTTGCTA
1 CTATTTTGCTA
*
14970723 CTATTTTACTA
1 CTATTTTGCTA
* *
14970734 TTATGTTGCTA
1 CTATTTTGCTA
14970745 CTATTTTG
1 CTATTTTG
14970753 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:14970824 original size:30 final size:30
Alignment explanation
Indices: 14970789--14970851 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
14970779 TTTTATTTTA
*
14970789 TTGTTAATTTTTTTATTATTTTA-AACACAT
1 TTGTTAATTTTGTTATTATTTTAGAA-ACAT
14970819 TTGTTAATTTTGTTATTATTTTAGAAACAT
1 TTGTTAATTTTGTTATTATTTTAGAAACAT
14970849 TTG
1 TTG
14970852 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAAACAT
Found at i:14983631 original size:29 final size:31
Alignment explanation
Indices: 14983575--14983633 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 31
14983565 AATACATGTA
* *
14983575 TGTATTTGTTTATTATTTAAGTAAATATTAG
1 TGTATTTGATTATTATTTAAATAAATATTAG
*
14983606 TGTATTT-ATTATT-TTTAAATTAATATTA
1 TGTATTTGATTATTATTTAAATAAATATTA
14983634 TATGATAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 13 0.52
30 5 0.20
31 7 0.28
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (31 bp):
TGTATTTGATTATTATTTAAATAAATATTAG
Found at i:14983787 original size:21 final size:21
Alignment explanation
Indices: 14983727--14983775 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
14983717 ATGCTTGTAT
* *
14983727 TTAAGTATTAAAAGATATTTA
1 TTAATTATAAAAAGATATTTA
14983748 TTAATTATAAAAAGATATTTA
1 TTAATTATAAAAAGATATTTA
14983769 TTAATTA
1 TTAATTA
14983776 AATAATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (21 bp):
TTAATTATAAAAAGATATTTA
Found at i:14984020 original size:20 final size:18
Alignment explanation
Indices: 14983987--14984031 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
14983977 AACGAAAAGC
14983987 AGGG-AAAGAAAGAAAGAA
1 AGGGAAAAGAAAG-AAGAA
*
14984005 AGGAGAAAAGAGAGAAGAA
1 AGG-GAAAAGAAAGAAGAA
14984024 AGGGAAAA
1 AGGGAAAA
14984032 TTGAAGGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.33
19 9 0.38
20 7 0.29
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (18 bp):
AGGGAAAAGAAAGAAGAA
Found at i:14986227 original size:24 final size:22
Alignment explanation
Indices: 14986176--14986308 Score: 133
Period size: 22 Copynumber: 5.8 Consensus size: 22
14986166 GACTTCAGCA
14986176 TGCTCTCTGATTAGCACATTTG
1 TGCTCTCTGATTAGCACATTTG
14986198 TGCTCTCTGATTAGCACATTTG
1 TGCTCTCTGATTAGCACATTTG
****
14986220 TGCTCTCTGATATTTAGCACGCCAG
1 TGCTCTCTG--A-TTAGCACATTTG
* **
14986245 TGCTCTCTGATATTTAGCACGTCAG
1 TGCTCTCTG--A-TTAGCACATTTG
14986270 TGCTCTCTGATTAGCACATTTG
1 TGCTCTCTGATTAGCACATTTG
14986292 TGCTCTCTG-TATAGCAC
1 TGCTCTCTGAT-TAGCAC
14986309 TTCAGTGCTC
Statistics
Matches: 99, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
21 1 0.01
22 55 0.56
23 1 0.01
24 1 0.01
25 41 0.41
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.38
Consensus pattern (22 bp):
TGCTCTCTGATTAGCACATTTG
Found at i:14986277 original size:27 final size:25
Alignment explanation
Indices: 14986219--14986280 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
14986209 TAGCACATTT
14986219 GTGCTCTCTGATATTTAGCACGCCA
1 GTGCTCTCTGATATTTAGCACGCCA
*
14986244 GTGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATATTTAGCACGCCA
14986269 GTGCTCTCTGAT
1 GTGCTCTCTGAT
14986281 TAGCACATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (25 bp):
GTGCTCTCTGATATTTAGCACGCCA
Found at i:14986316 original size:22 final size:22
Alignment explanation
Indices: 14986167--14986319 Score: 116
Period size: 22 Copynumber: 6.6 Consensus size: 22
14986157 ATGTTAAGGG
14986167 ACTTCAGCATGCTCTCTGATTAGC
1 ACTTCAG--TGCTCTCTGATTAGC
*
14986191 ACATT-TGTGCTCTCTGATTAGC
1 AC-TTCAGTGCTCTCTGATTAGC
*
14986213 ACATT-TGTGCTCTCTGATATTTAGC
1 AC-TTCAGTGCTCTCTG--A-TTAGC
**
14986238 ACGCCAGTGCTCTCTGATATTTAGC
1 ACTTCAGTGCTCTCTG--A-TTAGC
*
14986263 ACGTCAGTGCTCTCTGATTAGC
1 ACTTCAGTGCTCTCTGATTAGC
*
14986285 ACATT-TGTGCTCTCTG-TATAGC
1 AC-TTCAGTGCTCTCTGAT-TAGC
14986307 ACTTCAGTGCTCT
1 ACTTCAGTGCTCT
14986320 TTGTTCATTA
Statistics
Matches: 113, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
21 3 0.03
22 61 0.54
23 2 0.02
24 4 0.04
25 43 0.38
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.37
Consensus pattern (22 bp):
ACTTCAGTGCTCTCTGATTAGC
Found at i:14988977 original size:29 final size:31
Alignment explanation
Indices: 14988922--14988980 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 31
14988912 AATACATGTA
* *
14988922 TGTATTTGCTTATTATTTAAGTAAATATTAG
1 TGTATTTGATTATTATTTAAATAAATATTAG
*
14988953 TGTATTT-ATTATT-TTTAAATTAATATTA
1 TGTATTTGATTATTATTTAAATAAATATTA
14988981 TATGATAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 13 0.52
30 5 0.20
31 7 0.28
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.56
Consensus pattern (31 bp):
TGTATTTGATTATTATTTAAATAAATATTAG
Found at i:14989111 original size:20 final size:20
Alignment explanation
Indices: 14989082--14989121 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
14989072 ATTTAAGTAT
*
14989082 TAAAATATATTTATTAATTA
1 TAAAAGATATTTATTAATTA
14989102 TAAAAGATATTTATTAATTA
1 TAAAAGATATTTATTAATTA
14989122 AATAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAAAAGATATTTATTAATTA
Found at i:14989365 original size:20 final size:18
Alignment explanation
Indices: 14989332--14989376 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
14989322 AACGAAAAGC
14989332 AGGG-AAAGAAAGAAAGAA
1 AGGGAAAAGAAAG-AAGAA
*
14989350 AGGAGAAAAGAGAGAAGAA
1 AGG-GAAAAGAAAGAAGAA
14989369 AGGGAAAA
1 AGGGAAAA
14989377 TTGAAGGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.33
19 9 0.38
20 7 0.29
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (18 bp):
AGGGAAAAGAAAGAAGAA
Found at i:14992634 original size:46 final size:48
Alignment explanation
Indices: 14992561--14992680 Score: 129
Period size: 48 Copynumber: 2.5 Consensus size: 48
14992551 GACAGGACAG
* * *
14992561 GACAGAAATGAACCATGTAAGTCCATA-T-CAGATATATGGCTTTGGA
1 GACAGGAATGAACCATGTAAGCCCATATTACAGATATATGGCATTGGA
* * * *
14992607 GATAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAACCATGTAAGCCCATATTACAGATATATGGCATTGGA
* *
14992655 GACAGGAAT-AATTCATGTAAGTCCAT
1 GACAGGAATGAA-CCATGTAAGCCCAT
14992681 GTCGAAGACA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 23 0.38
47 2 0.03
48 35 0.58
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
GACAGGAATGAACCATGTAAGCCCATATTACAGATATATGGCATTGGA
Found at i:14994470 original size:27 final size:26
Alignment explanation
Indices: 14994410--14994471 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
14994400 ATTTTATTTT
14994410 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * *
14994436 ATAATTATTAGGATTATTCAA-ATTTAGG
1 AT-TTTATTAGGATAATT-AATA-TTAAG
14994464 ATTTTATT
1 ATTTTATT
14994472 TTAATTATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 19 0.66
28 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:14996080 original size:22 final size:23
Alignment explanation
Indices: 14996055--14996100 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
14996045 CAACCAAACC
14996055 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
14996077 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
14996100 A
1 A
14996101 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:14996106 original size:23 final size:23
Alignment explanation
Indices: 14996062--14996106 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14996052 ACCAATTCAA
*
14996062 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
14996085 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
14996107 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:15005179 original size:12 final size:12
Alignment explanation
Indices: 15005164--15005261 Score: 56
Period size: 12 Copynumber: 8.2 Consensus size: 12
15005154 CTTCGTCGGG
15005164 GGCTGAGTTGGA
1 GGCTGAGTTGGA
*
15005176 GGCTTG-GTTGGT
1 GGC-TGAGTTGGA
* * *
15005188 GGCTTAGTCGGG
1 GGCTGAGTTGGA
*
15005200 GGCTGAGTTGGT
1 GGCTGAGTTGGA
* * *
15005212 GGCTTAGTCGGG
1 GGCTGAGTTGGA
*
15005224 GGTTGAGTTGGA
1 GGCTGAGTTGGA
* *
15005236 GGTTTG-GTTGGT
1 GG-CTGAGTTGGA
*
15005248 GGCTTAGTTGGA
1 GGCTGAGTTGGA
15005260 GG
1 GG
15005262 TTGAACTGGT
Statistics
Matches: 64, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
11 2 0.03
12 57 0.89
13 5 0.08
ACGTcount: A:0.09, C:0.08, G:0.50, T:0.33
Consensus pattern (12 bp):
GGCTGAGTTGGA
Found at i:15005186 original size:36 final size:36
Alignment explanation
Indices: 15005146--15005216 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
15005136 TGGTGGGTGT
*
15005146 GTTGGTGGCTTCGTCGGGGGCTGAGTTGGAGGCTTG
1 GTTGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTTG
*
15005182 GTTGGTGGCTTAGTCGGGGGCTGAGTTGGTGGCTT
1 GTTGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTT
15005217 AGTCGGGGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.06, C:0.13, G:0.49, T:0.32
Consensus pattern (36 bp):
GTTGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTTG
Found at i:15005191 original size:24 final size:24
Alignment explanation
Indices: 15005136--15005309 Score: 93
Period size: 24 Copynumber: 7.2 Consensus size: 24
15005126 GAGGATGAGA
* * *
15005136 TGGTGGGTGTGTTGGTGGCTTCGT
1 TGGTGGCTGAGTTGGTGGCTTGGT
* * *
15005160 CGGGGGCTGAGTTGGAGGCTTGGT
1 TGGTGGCTGAGTTGGTGGCTTGGT
* * *
15005184 TGGTGGCTTAGTCGGGGGC-TGAGT
1 TGGTGGCTGAGTTGGTGGCTTG-GT
* * *
15005208 TGGTGGCTTAGTCGG-GGGTTGAGT
1 TGGTGGCTGAGTTGGTGGCTTG-GT
* * *
15005232 TGGAGGTTTG-GTTGGTGGCTTAGT
1 TGGTGG-CTGAGTTGGTGGCTTGGT
* * ** *
15005256 TGGAGGTTGAACTGGTGGCTTGGG
1 TGGTGGCTGAGTTGGTGGCTTGGT
* **
15005280 TGGTGGGTGAACTGGTGGCTTGGT
1 TGGTGGCTGAGTTGGTGGCTTGGT
15005304 TGGTGG
1 TGGTGG
15005310 TTGCACTGGC
Statistics
Matches: 120, Mismatches: 25, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
23 7 0.06
24 108 0.90
25 5 0.04
ACGTcount: A:0.07, C:0.09, G:0.51, T:0.33
Consensus pattern (24 bp):
TGGTGGCTGAGTTGGTGGCTTGGT
Found at i:15005272 original size:60 final size:60
Alignment explanation
Indices: 15005148--15005276 Score: 186
Period size: 60 Copynumber: 2.1 Consensus size: 60
15005138 GTGGGTGTGT
* * **
15005148 TGGTGGCTTCGTCGGGGGCTGAGTTGGAGGCTTGGTTGGTGGCTTAGTCGGGGGCTGAGT
1 TGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
* * * *
15005208 TGGTGGCTTAGTCGGGGGTTGAGTTGGAGGTTTGGTTGGTGGCTTAGTTGGAGGTTGAAC
1 TGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
15005268 TGGTGGCTT
1 TGGTGGCTT
15005277 GGGTGGTGGG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.09, C:0.10, G:0.48, T:0.33
Consensus pattern (60 bp):
TGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
Found at i:15005284 original size:36 final size:36
Alignment explanation
Indices: 15005208--15005285 Score: 93
Period size: 36 Copynumber: 2.2 Consensus size: 36
15005198 GGGGCTGAGT
* ** * *
15005208 TGGTGGCTTAGTCGGGGGTTGAGTTGGAGGTTTGGT
1 TGGTGGCTTAGTCGGAGGTTGAACTGGAGGCTTGGG
* *
15005244 TGGTGGCTTAGTTGGAGGTTGAACTGGTGGCTTGGG
1 TGGTGGCTTAGTCGGAGGTTGAACTGGAGGCTTGGG
15005280 TGGTGG
1 TGGTGG
15005286 GTGAACTGGT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.09, C:0.06, G:0.50, T:0.35
Consensus pattern (36 bp):
TGGTGGCTTAGTCGGAGGTTGAACTGGAGGCTTGGG
Found at i:15005299 original size:48 final size:48
Alignment explanation
Indices: 15005244--15005342 Score: 144
Period size: 48 Copynumber: 2.1 Consensus size: 48
15005234 GAGGTTTGGT
* * *
15005244 TGGTGGCTTAGTTGGAGGTTGAACTGGTGGCTTGGGTGGTGGGTGAAC
1 TGGTGGCTTAGTTGGAGGTTGAACTGGCGCCTTGGGTGGTGGATGAAC
* * *
15005292 TGGTGGCTTGGTTGGTGGTTGCACTGGCGCCTTGGGTGGTGGATGAAC
1 TGGTGGCTTAGTTGGAGGTTGAACTGGCGCCTTGGGTGGTGGATGAAC
15005340 TGG
1 TGG
15005343 AGGAGGAGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.10, C:0.11, G:0.47, T:0.31
Consensus pattern (48 bp):
TGGTGGCTTAGTTGGAGGTTGAACTGGCGCCTTGGGTGGTGGATGAAC
Found at i:15005303 original size:60 final size:60
Alignment explanation
Indices: 15005148--15005309 Score: 166
Period size: 60 Copynumber: 2.7 Consensus size: 60
15005138 GTGGGTGTGT
* * ** * **
15005148 TGGTGGCTTCGTCGGGGGCTGAGTTGGAGGCTTGGTTGGTGGCTTAGTCGGGGGCTGAGT
1 TGGTGGCTTAGTCGGGGGTTGAACTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
** * * *
15005208 TGGTGGCTTAGTCGGGGGTTGAGTTGGAGGTTTGGTTGGTGGCTTAGTTGGAGGTTGAAC
1 TGGTGGCTTAGTCGGGGGTTGAACTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
* *
15005268 TGGTGGCTTGGGT-GGTGGG-TGAACTGGTGGCTTGGTTGGTGG
1 TGGTGGCTT-AGTCGG-GGGTTGAACTGGAGGCTTGGTTGGTGG
15005310 TTGCACTGGC
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
60 82 0.94
61 5 0.06
ACGTcount: A:0.08, C:0.09, G:0.50, T:0.33
Consensus pattern (60 bp):
TGGTGGCTTAGTCGGGGGTTGAACTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
Found at i:15005317 original size:24 final size:24
Alignment explanation
Indices: 15005244--15005342 Score: 117
Period size: 24 Copynumber: 4.1 Consensus size: 24
15005234 GAGGTTTGGT
* * *
15005244 TGGTGGCTTAGTTGGAGGTTGAAC
1 TGGTGGCTTGGGTGGTGGTTGAAC
*
15005268 TGGTGGCTTGGGTGGTGGGTGAAC
1 TGGTGGCTTGGGTGGTGGTTGAAC
* *
15005292 TGGTGGCTTGGTTGGTGGTTGCAC
1 TGGTGGCTTGGGTGGTGGTTGAAC
* * *
15005316 TGGCGCCTTGGGTGGTGGATGAAC
1 TGGTGGCTTGGGTGGTGGTTGAAC
15005340 TGG
1 TGG
15005343 AGGAGGAGTG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.10, C:0.11, G:0.47, T:0.31
Consensus pattern (24 bp):
TGGTGGCTTGGGTGGTGGTTGAAC
Found at i:15005414 original size:12 final size:12
Alignment explanation
Indices: 15005371--15005424 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
15005361 GGGCTTAGTG
*
15005371 GGTGGATGAGGAT
1 GGTGG-TGAGGGT
*
15005384 GGGGGTGAGGGT
1 GGTGGTGAGGGT
15005396 GAG-GGTGAGGGT
1 G-GTGGTGAGGGT
*
15005408 GGTGGTGATGGT
1 GGTGGTGAGGGT
15005420 GGTGG
1 GGTGG
15005425 GTTGGTGGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 1 0.03
12 30 0.83
13 5 0.14
ACGTcount: A:0.13, C:0.00, G:0.65, T:0.22
Consensus pattern (12 bp):
GGTGGTGAGGGT
Found at i:15013143 original size:21 final size:21
Alignment explanation
Indices: 15013117--15013157 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15013107 ATCTGCTCAA
* *
15013117 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
15013138 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
15013158 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:15017708 original size:9 final size:9
Alignment explanation
Indices: 15017694--15017727 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
15017684 GACGAAATTG
15017694 AAAAGAAGA
1 AAAAGAAGA
15017703 AAAAGAAGA
1 AAAAGAAGA
15017712 AAAAGAAGA
1 AAAAGAAGA
*
15017721 AGAAGAA
1 AAAAGAA
15017728 CAACAACAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (9 bp):
AAAAGAAGA
Found at i:15018152 original size:29 final size:31
Alignment explanation
Indices: 15018120--15018186 Score: 93
Period size: 29 Copynumber: 2.2 Consensus size: 31
15018110 CCATCGTAAT
** *
15018120 TTTAAAAAAAATATT-GTAATTAACTT-GAA
1 TTTAAAAAAAATATTAACAATTAACTTAAAA
15018149 TTTAAAAAAAATATTAACAATTAACTTAAAA
1 TTTAAAAAAAATATTAACAATTAACTTAAAA
15018180 TTTAAAA
1 TTTAAAA
15018187 TTTAAAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 15 0.45
30 9 0.27
31 9 0.27
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.36
Consensus pattern (31 bp):
TTTAAAAAAAATATTAACAATTAACTTAAAA
Found at i:15018657 original size:18 final size:18
Alignment explanation
Indices: 15018634--15018669 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15018624 GTTGTTTTGA
15018634 ATGCTAATAATGCATGAT
1 ATGCTAATAATGCATGAT
15018652 ATGCTAATAATGCATGAT
1 ATGCTAATAATGCATGAT
15018670 TTGGGGACCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (18 bp):
ATGCTAATAATGCATGAT
Found at i:15018811 original size:21 final size:20
Alignment explanation
Indices: 15018773--15018811 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15018763 ATATGTTAGA
*
15018773 TAAAAAATTGATTTTTTTGT
1 TAAAAAATTGATTATTTTGT
*
15018793 TAAAAAATTTATTCATTTT
1 TAAAAAATTGATT-ATTTT
15018812 TACTGTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (20 bp):
TAAAAAATTGATTATTTTGT
Found at i:15019908 original size:64 final size:65
Alignment explanation
Indices: 15019807--15019936 Score: 226
Period size: 65 Copynumber: 2.0 Consensus size: 65
15019797 ACTTCAATGT
*
15019807 TAAATTAATGTAAGTTTACACTTTTTTATAA-ATTTTTTGTATGATTGATATTTTAACAATCAAG
1 TAAATTAAAGTAAGTTTACACTTTTTTATAATATTTTTTGTATGATTGATATTTTAACAATCAAG
* *
15019871 TAAATTAAAGTAAGTTTACACTTTTTTATTATTTTTTTTGTATGATTGATATTTTAACAATCAAG
1 TAAATTAAAGTAAGTTTACACTTTTTTATAATATTTTTTGTATGATTGATATTTTAACAATCAAG
15019936 T
1 T
15019937 CCTTAAACAT
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
64 29 0.47
65 33 0.53
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (65 bp):
TAAATTAAAGTAAGTTTACACTTTTTTATAATATTTTTTGTATGATTGATATTTTAACAATCAAG
Found at i:15028288 original size:18 final size:17
Alignment explanation
Indices: 15028253--15028285 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15028243 CTTTTTATTC
15028253 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
15028270 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
15028286 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:15028469 original size:29 final size:31
Alignment explanation
Indices: 15028414--15028471 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
15028404 TTATTTAACA
*
15028414 AATAAAAATCTTATAATATTAACATTTAATT
1 AATAAAAATCTTATAATATTAAAATTTAATT
* *
15028445 AATAAATATCTT-TAA-CTTAAAATTTAA
1 AATAAAAATCTTATAATATTAAAATTTAA
15028472 GTAAATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.42
30 3 0.12
31 11 0.46
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (31 bp):
AATAAAAATCTTATAATATTAAAATTTAATT
Found at i:15030945 original size:28 final size:28
Alignment explanation
Indices: 15030905--15030983 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
15030895 GCAATCAAAT
* * *
15030905 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
15030933 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
15030961 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
15030984 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:15031781 original size:28 final size:28
Alignment explanation
Indices: 15031741--15031819 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
15031731 GCAATCAAAT
* * * *
15031741 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAAA
*
15031769 ATGGCACTTAGTGTGCGAGATATTGAAA
1 ATGGCACTTAGTGTGCGAAATATTGAAA
* *
15031797 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
15031820 CGAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAAA
Found at i:15048510 original size:19 final size:19
Alignment explanation
Indices: 15048488--15048526 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
15048478 TTTTAAATAG
*
15048488 ATACACATGTATTAATAAT
1 ATACACATGTATAAATAAT
15048507 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
15048526 A
1 A
15048527 AATAAGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:15049401 original size:15 final size:15
Alignment explanation
Indices: 15049378--15049427 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
15049368 TTTATCAAAT
15049378 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* *
15049393 TTATTTTGATTGAAT
1 TTATATTGATTGAAA
15049408 TTATATTGATTGAAA
1 TTATATTGATTGAAA
15049423 -TATAT
1 TTATAT
15049428 AATATATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 5 0.16
15 26 0.84
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:15049820 original size:23 final size:23
Alignment explanation
Indices: 15049792--15049849 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
15049782 TAATATTCCA
15049792 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
15049815 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
15049838 GGTGTGTTTGGG
1 GGTGTGTTTGGG
15049850 AGGAATCCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.07, C:0.03, G:0.43, T:0.47
Consensus pattern (23 bp):
GGTGTGTTTGGGTTGGATATTCT
Found at i:15049977 original size:18 final size:19
Alignment explanation
Indices: 15049954--15049994 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
15049944 AATGAAATGA
15049954 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
15049972 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
15049991 GAAA
1 GAAA
15049995 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:15049992 original size:13 final size:13
Alignment explanation
Indices: 15049942--15049981 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
15049932 TTGAGCTATT
15049942 AGAA-TGAAA-TG
1 AGAATTGAAATTG
15049953 AGAAATTG-AATTG
1 AG-AATTGAAATTG
15049966 AGAATTGAAATTG
1 AGAATTGAAATTG
15049979 AGA
1 AGA
15049982 TATGAGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.08
12 9 0.36
13 14 0.56
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (13 bp):
AGAATTGAAATTG
Found at i:15057528 original size:4 final size:4
Alignment explanation
Indices: 15057510--15057556 Score: 60
Period size: 4 Copynumber: 11.8 Consensus size: 4
15057500 TCTGGGAGGG
* *
15057510 TTCT TT-T TCTCT TTCT TTCT TTCT TTCT TTCT ATCT CTCT TTCT TTC
1 TTCT TTCT T-TCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC
15057557 AAGTTCTAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
3 2 0.05
4 34 0.89
5 2 0.05
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (4 bp):
TTCT
Found at i:15063629 original size:10 final size:10
Alignment explanation
Indices: 15063614--15063651 Score: 51
Period size: 9 Copynumber: 3.7 Consensus size: 10
15063604 AAGTTAGTCC
15063614 AATTTTTTTT
1 AATTTTTTTT
15063624 AA-TTTTTTT
1 AATTTTTTTT
15063633 AATTTTTTAGTT
1 AATTTTTT--TT
15063645 AATTTTT
1 AATTTTT
15063652 CGTCTCTACC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.36
10 7 0.28
12 9 0.36
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (10 bp):
AATTTTTTTT
Found at i:15068164 original size:167 final size:167
Alignment explanation
Indices: 15067888--15068388 Score: 1002
Period size: 167 Copynumber: 3.0 Consensus size: 167
15067878 ATCTCCAAAT
15067888 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
1 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
15067953 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
66 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
15068018 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
131 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
15068055 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
1 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
15068120 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
66 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
15068185 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
131 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
15068222 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
1 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
15068287 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
66 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
15068352 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
131 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
15068389 GATTCTTTTT
Statistics
Matches: 334, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
167 334 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (167 bp):
TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
Found at i:15085124 original size:176 final size:175
Alignment explanation
Indices: 15084824--15085155 Score: 472
Period size: 176 Copynumber: 1.9 Consensus size: 175
15084814 ATCTTCCCCC
* * * *
15084824 TACCACCGCCCCTCTTCTCTCCCTCGTCTCTGCAAATCAGTTTTTTTTTTCTTCTCATCTCAGTT
1 TACCACCGCCCCTCTTCTCTCCCTCGTATCTACAAATCAGTTTTTATTCTCTTCTCATCTCAGTT
* * * *
15084889 CTCGCCCACCGCCGTCTCCGCTGATTTTTTCTGGATCTGACCCGTATTCCGTGTCGGATCGTGTT
66 CTAGCCCACCGCCG-CTCCGCTGATTTTTGCCGGATCTGACCCGTATTCCGTGTCGGATCGTGTC
*
15084954 GACACAGGTACTGCACCCCAAATTGCCGAGTCAGGGTAACGAAGCT
130 GACACAAGTACTGCACCCCAAATTGCCGAGTCAGGGTAACGAAGCT
* * *
15085000 TACCATCGCCCCTCTTCTCTCTCTCGTATCTACATATCAGGTTTCTTCATTCTCTTCTCATCTCA
1 TACCACCGCCCCTCTTCTCTCCCTCGTATCTACAAATCA-GTTT-TT-ATTCTCTTCTCATCTCA
*
15085065 GTTCTAGCCCACCG-C-CTCCGCTGGTTTTTGCCGGATCTGACCCGTA-TCGCGTGTCGGATCGT
63 GTTCTAGCCCACCGCCGCTCCGCTGATTTTTGCCGGATCTGACCCGTATTC-CGTGTCGGATCGT
*
15085127 GTCGACACAAGTACTGCATCCCAAATTGC
127 GTCGACACAAGTACTGCACCCCAAATTGC
15085156 TCCGAGCCCG
Statistics
Matches: 138, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
175 2 0.01
176 101 0.73
177 4 0.03
178 3 0.02
179 28 0.20
ACGTcount: A:0.16, C:0.34, G:0.17, T:0.33
Consensus pattern (175 bp):
TACCACCGCCCCTCTTCTCTCCCTCGTATCTACAAATCAGTTTTTATTCTCTTCTCATCTCAGTT
CTAGCCCACCGCCGCTCCGCTGATTTTTGCCGGATCTGACCCGTATTCCGTGTCGGATCGTGTCG
ACACAAGTACTGCACCCCAAATTGCCGAGTCAGGGTAACGAAGCT
Done.