Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 6 of 325
Found at i:1842530 original size:42 final size:42
Alignment explanation
Indices: 1842482--1842609 Score: 141
Period size: 42 Copynumber: 3.0 Consensus size: 42
1842472 CTTCATTTAC
* * * *
1842482 TCGATGCTATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCACAT-A
* * *
1842525 T-GATGCCATAGCCCAGCTATAGTCTTACACATATTCATATA
1 TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCACATA
* ** *
1842566 TCGATGCCATGGTCCAGCTATGGTCTTACATGTAATCACATA
1 TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCACATA
1842608 TC
1 TC
1842610 ACATATCACA
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
41 2 0.03
42 67 0.96
43 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (42 bp):
TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCACATA
Found at i:1842643 original size:56 final size:56
Alignment explanation
Indices: 1842552--1842664 Score: 165
Period size: 56 Copynumber: 2.0 Consensus size: 56
1842542 TATAGTCTTA
* * * *
1842552 CACATATTCATATATCGATGCCATGGTCCAGCTATGGTCTTACATGTAATCACATAT
1 CACATATTCACATATCGATGCCATGGCCCAACTATGGTCTTACACG-AATCACATAT
*
1842609 CACATA-TCACATATCGATGCCATTGCCCAACTATGGTCTTACACGAATCACATAT
1 CACATATTCACATATCGATGCCATGGCCCAACTATGGTCTTACACGAATCACATAT
1842664 C
1 C
1842665 TCACTGATGC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 11 0.22
56 34 0.67
57 6 0.12
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (56 bp):
CACATATTCACATATCGATGCCATGGCCCAACTATGGTCTTACACGAATCACATAT
Found at i:1842690 original size:46 final size:47
Alignment explanation
Indices: 1842609--1842742 Score: 121
Period size: 47 Copynumber: 2.8 Consensus size: 47
1842599 AATCACATAT
* *
1842609 CACATATCACATATCGATGCCAT-TGCCCA-ACTATGGTCTTACAC-GAAT
1 CACATATCACACA--GATGCCATAT-CCCAGA-TATGGTCTTACACAGAAG
* * * *
1842657 CACATATCTCACTGATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACAGATGCCATATCCCAGATATGGTCTTACACAGAAG
* * **
1842704 CATATATCACACAGATGTCATATCTTAGATATGGTCTTA
1 CACATATCACACAGATGCCATATCCCAGATATGGTCTTA
1842743 TACGGAAATC
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
46 24 0.34
47 37 0.52
48 10 0.14
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (47 bp):
CACATATCACACAGATGCCATATCCCAGATATGGTCTTACACAGAAG
Found at i:1842813 original size:31 final size:31
Alignment explanation
Indices: 1842775--1842842 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
1842765 TAGCCGAATA
*
1842775 TTCACTGATCAGGTAGCCGAAGCTACCATTT
1 TTCACTGATCAGGTAGCCGAAGCTACCACTT
1842806 TTCACTGATCAGGTAGCCGAAGCTACCACTT
1 TTCACTGATCAGGTAGCCGAAGCTACCACTT
1842837 TTCACT
1 TTCACT
1842843 TTCACTTGTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (31 bp):
TTCACTGATCAGGTAGCCGAAGCTACCACTT
Found at i:1845584 original size:13 final size:13
Alignment explanation
Indices: 1845562--1845617 Score: 60
Period size: 13 Copynumber: 4.2 Consensus size: 13
1845552 AGAATATGAG
1845562 AAGAGAGAAAAATA
1 AAGA-AGAAAAATA
*
1845576 AAGGAGAAAAATA
1 AAGAAGAAAAATA
1845589 AGAGAATG-AAAATA
1 A-AGAA-GAAAAATA
*
1845603 AAGAAAAAAAATA
1 AAGAAGAAAAATA
1845616 AA
1 AA
1845618 AAAAGTACAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
13 22 0.61
14 13 0.36
15 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (13 bp):
AAGAAGAAAAATA
Found at i:1845591 original size:26 final size:26
Alignment explanation
Indices: 1845562--1845616 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
1845552 AGAATATGAG
* *
1845562 AAGAG-AGAAAAATAAAGGAGAAAAAT
1 AAGAGAAG-AAAATAAAGAAAAAAAAT
1845588 AAGAGAATGAAAATAAAGAAAAAAAAT
1 AAGAGAA-GAAAATAAAGAAAAAAAAT
1845615 AA
1 AA
1845617 AAAAAGTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.20
27 19 0.76
28 1 0.04
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (26 bp):
AAGAGAAGAAAATAAAGAAAAAAAAT
Found at i:1883545 original size:24 final size:24
Alignment explanation
Indices: 1883518--1883563 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
1883508 TTTAAATGTG
* *
1883518 ATTTTTTTACTATTTTTAATTAGA
1 ATTTATTTACAATTTTTAATTAGA
1883542 ATTTATTTACAATTTTTAATTA
1 ATTTATTTACAATTTTTAATTA
1883564 TAGTGTCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (24 bp):
ATTTATTTACAATTTTTAATTAGA
Found at i:1888807 original size:34 final size:32
Alignment explanation
Indices: 1888763--1888831 Score: 102
Period size: 32 Copynumber: 2.1 Consensus size: 32
1888753 TTTTTATTCT
*
1888763 TTTTGACAAAATACTTAAAATTATTAATAGCCTC
1 TTTTGAC-AAA-ACTTAAAACTATTAATAGCCTC
*
1888797 TTTTGTCAAAACTTAAAACTATTAATAGCCTC
1 TTTTGACAAAACTTAAAACTATTAATAGCCTC
1888829 TTT
1 TTT
1888832 CAACTCGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 24 0.73
33 3 0.09
34 6 0.18
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.41
Consensus pattern (32 bp):
TTTTGACAAAACTTAAAACTATTAATAGCCTC
Found at i:1915506 original size:13 final size:14
Alignment explanation
Indices: 1915490--1915525 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
1915480 CAATCTCATA
1915490 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
1915503 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
1915516 TCTC-ATTTCA
1 TCTCAATTTCA
1915526 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:1915515 original size:18 final size:19
Alignment explanation
Indices: 1915477--1915517 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
1915467 TGGTTCATGT
1915477 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
1915496 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
1915514 TTTC
1 TTTC
1915518 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:1915648 original size:23 final size:23
Alignment explanation
Indices: 1915622--1915679 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
1915612 GCAGATTCCT
*
1915622 CCCAAACACGCCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
1915645 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
1915668 CCCAAACACACC
1 CCCAAACACACC
1915680 CGGAATATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.45, C:0.43, G:0.05, T:0.07
Consensus pattern (23 bp):
CCCAAACACACCAGAATATCCAA
Found at i:1916069 original size:15 final size:15
Alignment explanation
Indices: 1916051--1916097 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
1916041 TATTATATAT
1916051 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
1916066 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
1916081 TTCAATCAATATAAA
1 TTCAATCAATATAAA
1916096 TT
1 TT
1916098 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:1916800 original size:19 final size:19
Alignment explanation
Indices: 1916778--1916819 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
1916768 CAAACCCTAA
1916778 TTCTCCCTT-TTTCTTTTCT
1 TTCTCCCTTCTTTC-TTTCT
*
1916797 TTCTCCTTTCTTTCTTTCT
1 TTCTCCCTTCTTTCTTTCT
1916816 TTCT
1 TTCT
1916820 TTCCATTGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (19 bp):
TTCTCCCTTCTTTCTTTCT
Found at i:1917081 original size:31 final size:32
Alignment explanation
Indices: 1917023--1917086 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
1917013 CATACATTTG
*
1917023 TCATAATTTAATATATTTATTACATAAAAATC
1 TCATAATATAATATATTTATTACATAAAAATC
*
1917055 TCATAATATAAT-TATTTAATTA-ATAAATATC
1 TCATAATATAATATATTT-ATTACATAAAAATC
1917086 T
1 T
1917087 TATTTAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 14 0.48
32 15 0.52
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (32 bp):
TCATAATATAATATATTTATTACATAAAAATC
Found at i:1917617 original size:13 final size:14
Alignment explanation
Indices: 1917599--1917627 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
1917589 GATTAACTTC
1917599 ATAAATATTTT-TA
1 ATAAATATTTTCTA
1917612 ATAAATATTTTCTA
1 ATAAATATTTTCTA
1917626 AT
1 AT
1917628 CTATTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
ATAAATATTTTCTA
Found at i:1923142 original size:15 final size:15
Alignment explanation
Indices: 1923122--1923151 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1923112 GATTTTATAG
1923122 GATGACCAAATGCAT
1 GATGACCAAATGCAT
*
1923137 GATGACCAATTGCAT
1 GATGACCAAATGCAT
1923152 TTACTTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (15 bp):
GATGACCAAATGCAT
Found at i:1929977 original size:21 final size:20
Alignment explanation
Indices: 1929931--1929978 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
1929921 ATTTAGCCTT
* *
1929931 TAAAGTTTTTTTTTTTAAAT
1 TAAATTTTTTTTTTTTAAAC
* *
1929951 TTAATTTTTATTTTTTTAAGC
1 TAAATTTTT-TTTTTTTAAAC
1929972 TAAATTT
1 TAAATTT
1929979 AGTCGTTAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (20 bp):
TAAATTTTTTTTTTTTAAAC
Found at i:1930184 original size:22 final size:23
Alignment explanation
Indices: 1930154--1930198 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
1930144 AATGAGCTTC
*
1930154 TTATATATAT-TTTTTGAATTTT
1 TTATATATATATTTTTCAATTTT
*
1930176 TTATTTATATATTTTTCAATTTT
1 TTATATATATATTTTTCAATTTT
1930199 AAATTATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (23 bp):
TTATATATATATTTTTCAATTTT
Found at i:1930205 original size:22 final size:24
Alignment explanation
Indices: 1930157--1930205 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 24
1930147 GAGCTTCTTA
* * *
1930157 TATATATTTTTTGAATTTTTTATT
1 TATATATTTTTTCAATTTTTAAAT
1930181 TATATA-TTTTTCAA-TTTTAAAT
1 TATATATTTTTTCAATTTTTAAAT
1930203 TAT
1 TAT
1930206 TTATCAACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 9 0.41
23 7 0.32
24 6 0.27
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (24 bp):
TATATATTTTTTCAATTTTTAAAT
Found at i:1930913 original size:19 final size:20
Alignment explanation
Indices: 1930871--1930920 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
1930861 AGATATGATC
1930871 AAAATCTAATTATTAAAAAAT
1 AAAAT-TAATTATTAAAAAAT
*
1930892 AAAA-TAATT-TTAAGAAATT
1 AAAATTAATTATTAA-AAAAT
1930911 AAAATTAATT
1 AAAATTAATT
1930921 CAATTAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 4 0.15
19 13 0.50
20 5 0.19
21 4 0.15
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATTAATTATTAAAAAAT
Found at i:1932824 original size:4 final size:4
Alignment explanation
Indices: 1932815--1932839 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
1932805 AAAATAGGAA
1932815 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
1932840 CAAATTAGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:1939112 original size:23 final size:22
Alignment explanation
Indices: 1939067--1939112 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
1939057 TTTGAAAATA
1939067 AATTTAAATTTCAAGTTAATTG
1 AATTTAAATTTCAAGTTAATTG
*
1939089 AATTTAATTATTT-AAGTTATTTG
1 AATTTAA--ATTTCAAGTTAATTG
1939112 A
1 A
1939113 TTTTTTTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 10 0.48
24 4 0.19
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (22 bp):
AATTTAAATTTCAAGTTAATTG
Found at i:1941116 original size:22 final size:22
Alignment explanation
Indices: 1941082--1941126 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
1941072 ATATATAATT
* * *
1941082 TTTTTCATATTTTATTATTATA
1 TTTTTAATATTTTAATAATATA
*
1941104 TTTTTAATTTTTTAATAATATA
1 TTTTTAATATTTTAATAATATA
1941126 T
1 T
1941127 ATATAAATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTTAATATTTTAATAATATA
Found at i:1950954 original size:17 final size:16
Alignment explanation
Indices: 1950932--1950979 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
1950922 TTTTTGTAAA
1950932 ATTATATTTTAAATAT
1 ATTATATTTTAAATAT
* *
1950948 GATTATATGTAAAATAT
1 -ATTATATTTTAAATAT
1950965 ATTTAATATTTTAAA
1 A-TT-ATATTTTAAA
1950980 CATAAGTCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 1 0.04
17 16 0.64
18 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (16 bp):
ATTATATTTTAAATAT
Found at i:1953437 original size:14 final size:13
Alignment explanation
Indices: 1953406--1953447 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
1953396 TTACGGTTAG
1953406 TTATTTTTTTAAT
1 TTATTTTTTTAAT
* *
1953419 ATATTTTTATTTAT
1 TTATTTTT-TTAAT
1953433 TTA-TTTTTTAAT
1 TTATTTTTTTAAT
1953445 TTA
1 TTA
1953448 ATCGTTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 7 0.29
13 11 0.46
14 6 0.25
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TTATTTTTTTAAT
Found at i:1955398 original size:30 final size:26
Alignment explanation
Indices: 1955373--1955424 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1955363 TTTTATTCAC
1955373 TTCA-CTAATAAAGTATATAGATTTA
1 TTCATCTAATAAAGTATATAGATTTA
*
1955398 TTGATCTAATAAAGTATATAGATTTA
1 TTCATCTAATAAAGTATATAGATTTA
1955424 T
1 T
1955425 CTGGTATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (26 bp):
TTCATCTAATAAAGTATATAGATTTA
Found at i:1963541 original size:2 final size:2
Alignment explanation
Indices: 1963534--1963569 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1963524 AACACTGAAC
1963534 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1963570 AAAAAAAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:1969451 original size:75 final size:75
Alignment explanation
Indices: 1969328--1969479 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
1969318 TGCAGATGTT
1969328 ATTGGTGGATAACACTTGCATTATTTTACAATAATTAAGATGGGGTGATCTAATTCCCCGAAACA
1 ATTGGTGGATAACACTTGCATTATTTTACAATAATTAAGATGGGGTGATCTAATTCCCCGAAACA
1969393 AGAGCAAGTG
66 AGAGCAAGTG
1969403 ATTGGTGGATAACACTTGCATTATTTTACAATAATTAAGATGGGGTGATCTAATTCCCCGAAACA
1 ATTGGTGGATAACACTTGCATTATTTTACAATAATTAAGATGGGGTGATCTAATTCCCCGAAACA
1969468 AGAGCAAGTG
66 AGAGCAAGTG
1969478 AT
1 AT
1969480 GATGAGAGTG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (75 bp):
ATTGGTGGATAACACTTGCATTATTTTACAATAATTAAGATGGGGTGATCTAATTCCCCGAAACA
AGAGCAAGTG
Found at i:1971524 original size:29 final size:30
Alignment explanation
Indices: 1971471--1971527 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1971461 TCCGAGCCTT
1971471 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGTAAAAGTTTA
* *
1971501 GGGGCAAAATTGTAATTTTG-AAAAGTT
1 GGGGCAAAAATGTAATTATGTAAAAGTT
1971528 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.32
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGTAAAAGTTTA
Found at i:1971757 original size:13 final size:13
Alignment explanation
Indices: 1971739--1971770 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
1971729 TTTCCAGCAA
1971739 TTATGAATTTATT
1 TTATGAATTTATT
1971752 TTATGAATTTATT
1 TTATGAATTTATT
*
1971765 TGATGA
1 TTATGA
1971771 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:1971978 original size:50 final size:50
Alignment explanation
Indices: 1971865--1972106 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
1971855 ATTTGGGTAA
* * *
1971865 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
1971921 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
1971971 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
1972021 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
1972071 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
1972107 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:1972054 original size:100 final size:103
Alignment explanation
Indices: 1971865--1972114 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
1971855 ATTTGGGTAA
1971865 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
1971930 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
1971971 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
1972033 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
1972071 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
1972115 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:1975779 original size:39 final size:37
Alignment explanation
Indices: 1975712--1975804 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
1975702 ACCAGAATGG
* *
1975712 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
1975751 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
1975788 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
1975805 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:1976168 original size:3 final size:3
Alignment explanation
Indices: 1976160--1976207 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
1976150 ATTCCCACTC
* * * *
1976160 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1976208 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:1976208 original size:18 final size:18
Alignment explanation
Indices: 1976161--1976209 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
1976151 TTCCCACTCA
*
1976161 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
1976179 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
1976197 TAATATTAATACT
1 TAATAATAATACT
1976210 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:1976209 original size:12 final size:12
Alignment explanation
Indices: 1976160--1976207 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
1976150 ATTCCCACTC
*
1976160 ATAATAATAATA
1 ATAATACTAATA
1976172 ATAATACTAATA
1 ATAATACTAATA
1976184 ATAATACTAATA
1 ATAATACTAATA
* *
1976196 CTAATATTAATA
1 ATAATACTAATA
1976208 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:1976942 original size:15 final size:15
Alignment explanation
Indices: 1976895--1976955 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
1976885 TCTCTGTTCC
*
1976895 TTTG-TTCTTTCTAT
1 TTTGTTTCTTTCTTT
* *
1976909 TCTGTTTCTTTTCTGT
1 TTTGTTTC-TTTCTTT
1976925 TTTGTTTCTTTCTTT
1 TTTGTTTCTTTCTTT
*
1976940 TTT-TTTATTTCCTTT
1 TTTGTTTCTTT-CTTT
1976955 T
1 T
1976956 ATTTAATTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 9 0.23
15 17 0.44
16 13 0.33
ACGTcount: A:0.03, C:0.15, G:0.07, T:0.75
Consensus pattern (15 bp):
TTTGTTTCTTTCTTT
Found at i:1977117 original size:31 final size:28
Alignment explanation
Indices: 1977081--1977148 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
1977071 TTGTCTTTAT
**
1977081 TTAATTTATTTCTTAATATAATATTTATAA
1 TTAATTTATTTAATAATAT-A-ATTTATAA
* *
1977111 TGTAATTAATTTAATAATATACTTTATAA
1 T-TAATTTATTTAATAATATAATTTATAA
1977140 TTAATTTAT
1 TTAATTTAT
1977149 ATATTTATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 8 0.25
30 2 0.06
31 15 0.47
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (28 bp):
TTAATTTATTTAATAATATAATTTATAA
Found at i:1977165 original size:21 final size:20
Alignment explanation
Indices: 1977127--1977165 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
1977117 TAATTTAATA
*
1977127 ATATACTTTATAATTAATTT
1 ATATACTTTATAAATAATTT
*
1977147 ATATATTTATATAAATAAT
1 ATATACTT-TATAAATAAT
1977166 AATATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATACTTTATAAATAATTT
Found at i:1982109 original size:21 final size:21
Alignment explanation
Indices: 1982067--1982109 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
1982057 TTCACTATAC
*
1982067 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
1982088 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
1982109 A
1 A
1982110 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:1983220 original size:39 final size:37
Alignment explanation
Indices: 1983153--1983245 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
1983143 ACCAGAATGG
* *
1983153 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
1983192 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
1983229 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
1983246 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:1983608 original size:3 final size:3
Alignment explanation
Indices: 1983600--1983647 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
1983590 ATTCCCACTC
* * * *
1983600 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1983648 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:1983648 original size:18 final size:18
Alignment explanation
Indices: 1983601--1983649 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
1983591 TTCCCACTCA
*
1983601 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
1983619 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
1983637 TAATATTAATACT
1 TAATAATAATACT
1983650 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:1983649 original size:12 final size:12
Alignment explanation
Indices: 1983600--1983647 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
1983590 ATTCCCACTC
*
1983600 ATAATAATAATA
1 ATAATACTAATA
1983612 ATAATACTAATA
1 ATAATACTAATA
1983624 ATAATACTAATA
1 ATAATACTAATA
* *
1983636 CTAATATTAATA
1 ATAATACTAATA
1983648 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:1984387 original size:20 final size:20
Alignment explanation
Indices: 1984353--1984392 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
1984343 TTCTATTCTG
*
1984353 TTTCTTTTCTGTTTTGTTTC
1 TTTCTTTTCTGTTTTATTTC
1984373 TTTCTTTTTCT-TTTTATTTC
1 TTTC-TTTTCTGTTTTATTTC
1984393 CTTTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTCTTTTCTGTTTTATTTC
Found at i:1984559 original size:31 final size:28
Alignment explanation
Indices: 1984523--1984590 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
1984513 TTGTCTTTAT
**
1984523 TTAATTTATTTCTTAATATAATATTTATAA
1 TTAATTTATTTAATAATAT-A-ATTTATAA
* *
1984553 TGTAATTAATTTAATAATATACTTTATAA
1 T-TAATTTATTTAATAATATAATTTATAA
1984582 TTAATTTAT
1 TTAATTTAT
1984591 ATATTTATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 8 0.25
30 2 0.06
31 15 0.47
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (28 bp):
TTAATTTATTTAATAATATAATTTATAA
Found at i:1984607 original size:21 final size:20
Alignment explanation
Indices: 1984569--1984607 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
1984559 TAATTTAATA
*
1984569 ATATACTTTATAATTAATTT
1 ATATACTTTATAAATAATTT
*
1984589 ATATATTTATATAAATAAT
1 ATATACTT-TATAAATAAT
1984608 AATATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATACTTTATAAATAATTT
Found at i:1989212 original size:29 final size:30
Alignment explanation
Indices: 1989153--1989210 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1989143 TCCGAGCCTT
*
1989153 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
1989183 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
1989211 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:1989440 original size:13 final size:13
Alignment explanation
Indices: 1989422--1989453 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
1989412 TTTCCAGCAA
1989422 TTATGAATTTATT
1 TTATGAATTTATT
1989435 TTATGAATTTATT
1 TTATGAATTTATT
*
1989448 TGATGA
1 TTATGA
1989454 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:1989661 original size:50 final size:50
Alignment explanation
Indices: 1989548--1989789 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
1989538 ATTTGGGTAA
* * *
1989548 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
1989604 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
1989654 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
1989704 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
1989754 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
1989790 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:1989737 original size:100 final size:103
Alignment explanation
Indices: 1989548--1989797 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
1989538 ATTTGGGTAA
1989548 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
1989613 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
1989654 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
1989716 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
1989754 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
1989798 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:1999958 original size:24 final size:24
Alignment explanation
Indices: 1999913--1999959 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
1999903 ATTATACCCT
*
1999913 ATATTACAGGATGGCCGTAATGTG
1 ATATTACAGGATGGCCGGAATGTG
* **
1999937 ATATTATAGGATGGTTGGAATGT
1 ATATTACAGGATGGCCGGAATGT
1999960 TGAAATCCAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.06, G:0.30, T:0.34
Consensus pattern (24 bp):
ATATTACAGGATGGCCGGAATGTG
Found at i:2001590 original size:14 final size:14
Alignment explanation
Indices: 2001568--2001607 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
2001558 AACCATAAAA
* *
2001568 AAATACAAAACTTT
1 AAATCCAAAACCTT
2001582 AAATCCAAAACCTT
1 AAATCCAAAACCTT
*
2001596 AAATCTAAAACC
1 AAATCCAAAACC
2001608 CAAAAACCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (14 bp):
AAATCCAAAACCTT
Found at i:2022408 original size:24 final size:25
Alignment explanation
Indices: 2022381--2022427 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
2022371 TAATTAAATT
*
2022381 TTATAAATAATTAATATT-TATTAG
1 TTATAAATAATTAAAATTATATTAG
*
2022405 TTATAAATATTTAAAATTATATT
1 TTATAAATAATTAAAATTATATT
2022428 TCATATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
TTATAAATAATTAAAATTATATTAG
Found at i:2022511 original size:19 final size:19
Alignment explanation
Indices: 2022466--2022516 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
2022456 ATAATAATTT
*
2022466 TTTAAAT-ATATTTACTAA
1 TTTAAATAATATTAACTAA
**
2022484 AATACAATAATATTAACTAA
1 TTTA-AATAATATTAACTAA
2022504 TTTAAATAATATT
1 TTTAAATAATATT
2022517 TAAATGCATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 2 0.08
19 12 0.46
20 12 0.46
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (19 bp):
TTTAAATAATATTAACTAA
Found at i:2022519 original size:20 final size:20
Alignment explanation
Indices: 2022466--2022519 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
2022456 ATAATAATTT
2022466 TTTAAAT-ATATTT-ACTAA
1 TTTAAATAATATTTAACTAA
**
2022484 AATACAATAATA-TTAACTAA
1 TTTA-AATAATATTTAACTAA
2022504 TTTAAATAATATTTAA
1 TTTAAATAATATTTAA
2022520 ATGCATATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
18 2 0.07
19 12 0.43
20 14 0.50
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.43
Consensus pattern (20 bp):
TTTAAATAATATTTAACTAA
Found at i:2024863 original size:5 final size:5
Alignment explanation
Indices: 2024853--2024885 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
2024843 AATAATTAAG
2024853 TATAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TAT
2024886 TATATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:2034327 original size:19 final size:19
Alignment explanation
Indices: 2034295--2034347 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
2034285 CTCTTTCAAC
2034295 AAAAATTACAAAATAATTT-T
1 AAAAATT-CAAAAT-ATTTAT
*
2034315 TAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
2034334 AAAAATTTCAAAAT
1 AAAAA-TTCAAAAT
2034348 TTGTGGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 4 0.14
19 11 0.38
20 14 0.48
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:2034534 original size:16 final size:16
Alignment explanation
Indices: 2034515--2034545 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2034505 TTGAAAAAGT
2034515 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
2034531 TTTCAAATTTATATG
1 TTTCAAATATATATG
2034546 CTAATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:2035272 original size:21 final size:22
Alignment explanation
Indices: 2035247--2035297 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
2035237 GAACCAACTC
*
2035247 AAGATG-TGCAGTCAACTGAGG
1 AAGATGCTACAGTCAACTGAGG
*
2035268 AAGATGCCTATAGTCAACTGAGG
1 AAGATG-CTACAGTCAACTGAGG
2035291 AAGATGC
1 AAGATGC
2035298 CTATCAGCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 6 0.23
22 1 0.04
23 19 0.73
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (22 bp):
AAGATGCTACAGTCAACTGAGG
Found at i:2035284 original size:23 final size:23
Alignment explanation
Indices: 2035256--2035301 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
2035246 CAAGATGTGC
2035256 AGTCAACTGAGGAAGATGCCTAT
1 AGTCAACTGAGGAAGATGCCTAT
2035279 AGTCAACTGAGGAAGATGCCTAT
1 AGTCAACTGAGGAAGATGCCTAT
2035302 CAGCCTTGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTCAACTGAGGAAGATGCCTAT
Found at i:2040131 original size:14 final size:14
Alignment explanation
Indices: 2040112--2040158 Score: 67
Period size: 14 Copynumber: 3.2 Consensus size: 14
2040102 CCTGCAAGCC
2040112 ATATATGTCAATATAT
1 ATATATGTC--TATAT
2040128 ATATATGTCTATAT
1 ATATATGTCTATAT
*
2040142 ATATGTGTCTATAT
1 ATATATGTCTATAT
2040156 ATA
1 ATA
2040159 ATTTTAAGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 21 0.70
16 9 0.30
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (14 bp):
ATATATGTCTATAT
Found at i:2043322 original size:21 final size:21
Alignment explanation
Indices: 2043298--2043339 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
2043288 CCAGCAATCT
2043298 TCATTTTCGTTGACTTCAATA
1 TCATTTTCGTTGACTTCAATA
2043319 TCATTTTCGTTGACTTCAATA
1 TCATTTTCGTTGACTTCAATA
2043340 AACTACGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.19, G:0.10, T:0.48
Consensus pattern (21 bp):
TCATTTTCGTTGACTTCAATA
Found at i:2058432 original size:21 final size:21
Alignment explanation
Indices: 2058406--2058446 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
2058396 ATCTGCTCAA
* *
2058406 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
2058427 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
2058447 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:2089773 original size:36 final size:36
Alignment explanation
Indices: 2089727--2089918 Score: 156
Period size: 36 Copynumber: 5.5 Consensus size: 36
2089717 GGGGGTGACA
2089727 GTGGTGGTGGTGGAGGTGAATGGTAAATAACTGAAG
1 GTGGTGGTGGTGGAGGTGAATGGTAAATAACTGAAG
* * *
2089763 GTGGTGGTGGTGGTGGTG-A-GG-AATATGTTAC--AAC
1 GTGGTGGTGGTGGAGGTGAATGGTAA-A--TAACTGAAG
2089797 G-GGTGGTGGTGGAGGTGAATGGTAAATAACTGAAG
1 GTGGTGGTGGTGGAGGTGAATGGTAAATAACTGAAG
* * *
2089832 GTGGTGGTGGTGGTGGTG-A-GG-AATATGTTAC--AAC
1 GTGGTGGTGGTGGAGGTGAATGGTAA-A--TAACTGAAG
* *
2089866 G-GGTGGTGGTGGAGGCGAATGGTAAATAACTGGAG
1 GTGGTGGTGGTGGAGGTGAATGGTAAATAACTGAAG
* *
2089901 GCGGTGGTGGTGGTGGTG
1 GTGGTGGTGGTGGAGGTG
2089919 GTGAGGAATA
Statistics
Matches: 122, Mismatches: 16, Indels: 36
0.70 0.09 0.21
Matches are distributed among these distances:
33 39 0.32
34 14 0.11
35 13 0.11
36 56 0.46
ACGTcount: A:0.22, C:0.05, G:0.47, T:0.26
Consensus pattern (36 bp):
GTGGTGGTGGTGGAGGTGAATGGTAAATAACTGAAG
Found at i:2089848 original size:72 final size:69
Alignment explanation
Indices: 2089729--2089949 Score: 379
Period size: 69 Copynumber: 3.2 Consensus size: 69
2089719 GGGTGACAGT
2089729 GGTGGTGGTGGAGGTGAATGGTAAATAACTGAAGGTGGTGGTGGTGGTGGTGAGGAATATGTTAC
1 GGTGGTGGTGGAGGTGAATGGTAAATAACTGAAGGTGGTGGTGGTGGTGGTGAGGAATATGTTAC
2089794 AACG
66 AACG
2089798 GGTGGTGGTGGAGGTGAATGGTAAATAACTGAAGGTGGTGGTGGTGGTGGTGAGGAATATGTTAC
1 GGTGGTGGTGGAGGTGAATGGTAAATAACTGAAGGTGGTGGTGGTGGTGGTGAGGAATATGTTAC
2089863 AACG
66 AACG
* *
2089867 GGTGGTGGTGGAGGCGAATGGTAAATAACTGGAGGCGGTGGTGGTGGTGGTGGTGAGGAATATGT
1 GGTGGTGGTGGAGGTGAATGGTAAATAACT-GA--AGGTGGTGGTGGTGGTGGTGAGGAATATGT
*
2089932 TACAAAG
63 TACAACG
*
2089939 GGTGGCGGTGG
1 GGTGGTGGTGG
2089950 TGAAGGTGAT
Statistics
Matches: 145, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
69 98 0.68
70 2 0.01
72 45 0.31
ACGTcount: A:0.23, C:0.05, G:0.47, T:0.25
Consensus pattern (69 bp):
GGTGGTGGTGGAGGTGAATGGTAAATAACTGAAGGTGGTGGTGGTGGTGGTGAGGAATATGTTAC
AACG
Found at i:2090216 original size:21 final size:21
Alignment explanation
Indices: 2090192--2090243 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
2090182 GGAGAACGTG
*
2090192 GTGGGGGTGGGGGTGAATGAT
1 GTGGCGGTGGGGGTGAATGAT
2090213 GTGGCGGTGGGGGTGAATGAT
1 GTGGCGGTGGGGGTGAATGAT
*
2090234 GTGGTGGTGG
1 GTGGCGGTGG
2090244 AGGAGAGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.12, C:0.02, G:0.62, T:0.25
Consensus pattern (21 bp):
GTGGCGGTGGGGGTGAATGAT
Found at i:2090395 original size:39 final size:39
Alignment explanation
Indices: 2090356--2090498 Score: 187
Period size: 39 Copynumber: 3.7 Consensus size: 39
2090346 TGGCGCAGGT
* * * * * * * *
2090356 GGTGAGGGTGAAGGGGGCGGTGGTAACGGATAAGTAGGT
1 GGTGGGGGTGAAGGAGGTGGAGGTGATGGATATGTAGGG
* *
2090395 GGCGGGGGTGAAGGCGGTGGAGGTGATGGATATGTAGGG
1 GGTGGGGGTGAAGGAGGTGGAGGTGATGGATATGTAGGG
2090434 GGTGGGGGTGAAGGAGGTGGAGGTGATGGATATGTAGGG
1 GGTGGGGGTGAAGGAGGTGGAGGTGATGGATATGTAGGG
*
2090473 GGTGGGGGTGAAGGAGGTGGTGGTGA
1 GGTGGGGGTGAAGGAGGTGGAGGTGA
2090499 GGGCGGTGGA
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.20, C:0.03, G:0.59, T:0.19
Consensus pattern (39 bp):
GGTGGGGGTGAAGGAGGTGGAGGTGATGGATATGTAGGG
Found at i:2090497 original size:15 final size:15
Alignment explanation
Indices: 2090473--2090525 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
2090463 ATATGTAGGG
*
2090473 GGTGGGGGTGAAGGA
1 GGTGGAGGTGAAGGA
* * *
2090488 GGTGGTGGTGAGGGC
1 GGTGGAGGTGAAGGA
* *
2090503 GGTGGAGGTGATGGT
1 GGTGGAGGTGAAGGA
2090518 GGTGGAGG
1 GGTGGAGG
2090526 AGGTGGAGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.13, C:0.02, G:0.66, T:0.19
Consensus pattern (15 bp):
GGTGGAGGTGAAGGA
Found at i:2092280 original size:102 final size:102
Alignment explanation
Indices: 2092148--2092352 Score: 365
Period size: 102 Copynumber: 2.0 Consensus size: 102
2092138 GTTTGAGGAG
* *
2092148 AGAGACAAGGGGATGAAAGGGTGTTTTTCTAGTAGGAATTGTAGGGCATGTGCTTGTGTGAGAGA
1 AGAGACAAAGGGATGAAAGGGTGTTTTTCTAGTAGGAATTGTAGGGCATGTGCTTGTGTAAGAGA
* *
2092213 AATGAAAATAACAATAATAAAAAGAAGGAGAAGAAAA
66 AAGGAAAAAAACAATAATAAAAAGAAGGAGAAGAAAA
2092250 AGAGACAAAGGGATGAAAGGGTGTTTTTCTAGTAGGAATTGTAGGGCATGTGCTTGTGTAAGAGA
1 AGAGACAAAGGGATGAAAGGGTGTTTTTCTAGTAGGAATTGTAGGGCATGTGCTTGTGTAAGAGA
*
2092315 AAGGAAAAAAACAATAATAAAAAGGAGGAGAAGAAAA
66 AAGGAAAAAAACAATAATAAAAAGAAGGAGAAGAAAA
2092352 A
1 A
2092353 AAGAAATAAT
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 98 1.00
ACGTcount: A:0.44, C:0.05, G:0.30, T:0.20
Consensus pattern (102 bp):
AGAGACAAAGGGATGAAAGGGTGTTTTTCTAGTAGGAATTGTAGGGCATGTGCTTGTGTAAGAGA
AAGGAAAAAAACAATAATAAAAAGAAGGAGAAGAAAA
Found at i:2096752 original size:19 final size:20
Alignment explanation
Indices: 2096714--2096752 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
2096704 AAATATTTAC
*
2096714 AAATATCAAATAATAAAATT
1 AAATATCAAAAAATAAAATT
*
2096734 AAATAT-AAAAAATATAATT
1 AAATATCAAAAAATAAAATT
2096753 TTGGTTAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (20 bp):
AAATATCAAAAAATAAAATT
Found at i:2104745 original size:15 final size:15
Alignment explanation
Indices: 2104725--2104753 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
2104715 TCTATTTCCA
2104725 AAAATATATTATTAC
1 AAAATATATTATTAC
2104740 AAAATATATTATTA
1 AAAATATATTATTA
2104754 ATACTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAATATATTATTAC
Found at i:2110882 original size:50 final size:50
Alignment explanation
Indices: 2110758--2111006 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
2110748 GATAATAACA
* * ** * *
2110758 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
2110809 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
2110859 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
2110909 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
2110964 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
2111007 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:2110936 original size:100 final size:104
Alignment explanation
Indices: 2110757--2111006 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
2110747 TGATAATAAC
**
2110757 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
2110822 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
2110859 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
2110922 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
2110964 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
2111007 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:2111122 original size:13 final size:13
Alignment explanation
Indices: 2111101--2111132 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2111091 GCTTGGATCA
*
2111101 TCATCAAATAAAT
1 TCATAAAATAAAT
2111114 TCATAAAATAAAT
1 TCATAAAATAAAT
2111127 TCATAA
1 TCATAA
2111133 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:2111379 original size:30 final size:30
Alignment explanation
Indices: 2111344--2111401 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
2111334 CCTCGACTCT
*
2111344 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
2111374 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
2111402 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:2115628 original size:22 final size:22
Alignment explanation
Indices: 2115602--2115654 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
2115592 TAATACCAAA
2115602 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
2115624 CCCCATACCTCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
2115646 TCCCATACC
1 CCCCATACC
2115655 GTCTGACACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.30, C:0.53, G:0.04, T:0.13
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:2116696 original size:20 final size:20
Alignment explanation
Indices: 2116671--2116708 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2116661 ATTTGTTATT
*
2116671 TTAGTTATTTTATCATTAAA
1 TTAGTTATTTTAACATTAAA
2116691 TTAGTTATTTTAACATTA
1 TTAGTTATTTTAACATTA
2116709 TTATTACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (20 bp):
TTAGTTATTTTAACATTAAA
Found at i:2116767 original size:16 final size:16
Alignment explanation
Indices: 2116748--2116778 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2116738 TATTGTTATC
*
2116748 TATTTATTTATATTTA
1 TATTTATTTAAATTTA
2116764 TATTTATTTAAATTT
1 TATTTATTTAAATTT
2116779 TCGGTACATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTATTTAAATTTA
Found at i:2120802 original size:50 final size:50
Alignment explanation
Indices: 2120678--2120926 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
2120668 GATAATAACA
* * ** * *
2120678 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
2120729 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
2120779 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
2120829 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
2120884 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
2120927 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:2120856 original size:100 final size:104
Alignment explanation
Indices: 2120677--2120926 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
2120667 TGATAATAAC
**
2120677 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
2120742 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
2120779 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
2120842 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
2120884 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
2120927 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:2121042 original size:13 final size:13
Alignment explanation
Indices: 2121021--2121052 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2121011 GCTTGGATCA
*
2121021 TCATCAAATAAAT
1 TCATAAAATAAAT
2121034 TCATAAAATAAAT
1 TCATAAAATAAAT
2121047 TCATAA
1 TCATAA
2121053 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:2121299 original size:30 final size:30
Alignment explanation
Indices: 2121264--2121321 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
2121254 CCTCGACTCT
*
2121264 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
2121294 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
2121322 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:2128309 original size:27 final size:28
Alignment explanation
Indices: 2128270--2128338 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
2128260 TTCCCAAACA
2128270 CGACCTTGACCTTTT-CTAGGGTTT-GAC
1 CGACCTTGACCTTTTACTA-GGTTTCGAC
* *
2128297 CGACCTTGGCCTTTTACTAGGTTTCGGC
1 CGACCTTGACCTTTTACTAGGTTTCGAC
2128325 CGACCTTGACCTTT
1 CGACCTTGACCTTT
2128339 AGCGTATGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 19 0.51
28 18 0.49
ACGTcount: A:0.13, C:0.29, G:0.22, T:0.36
Consensus pattern (28 bp):
CGACCTTGACCTTTTACTAGGTTTCGAC
Found at i:2131177 original size:20 final size:20
Alignment explanation
Indices: 2131125--2131167 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
2131115 ATTAGTATTC
2131125 TTATCCTGAATTTTAGAATT
1 TTATCCTGAATTTTAGAATT
*
2131145 TTATCCTGAATTTTAGTATT
1 TTATCCTGAATTTTAGAATT
2131165 TTA
1 TTA
2131168 ATTTGAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.53
Consensus pattern (20 bp):
TTATCCTGAATTTTAGAATT
Found at i:2133076 original size:103 final size:104
Alignment explanation
Indices: 2132833--2133097 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 104
2132823 GTTGTACATA
** *
2132833 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
2132898 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
2132937 GAGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
2133001 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
2133039 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
2133098 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
102 55 0.37
103 70 0.47
104 24 0.16
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:2140434 original size:26 final size:26
Alignment explanation
Indices: 2140399--2140449 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2140389 AATGTGAAAG
*
2140399 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
2140425 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
2140450 TTCATTGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:2140471 original size:102 final size:103
Alignment explanation
Indices: 2140320--2140583 Score: 415
Period size: 102 Copynumber: 2.6 Consensus size: 103
2140310 GTTGTACATA
** *
2140320 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
2140385 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCC
66 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
2140423 GAGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
2140487 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
2140525 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
2140584 AATAACGGTT
Statistics
Matches: 148, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
101 24 0.16
102 72 0.49
103 52 0.35
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:2141799 original size:12 final size:12
Alignment explanation
Indices: 2141784--2141808 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2141774 GAATACGAGT
2141784 AAGGGGTGTTAC
1 AAGGGGTGTTAC
2141796 AAGGGGTGTTAC
1 AAGGGGTGTTAC
2141808 A
1 A
2141809 TGATATTTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.40, T:0.24
Consensus pattern (12 bp):
AAGGGGTGTTAC
Found at i:2148971 original size:30 final size:30
Alignment explanation
Indices: 2148932--2149014 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 30
2148922 TAAGTACTTG
*
2148932 TACTCTTTATAAATTTAAAATTTAGT-CCTT
1 TACT-TTTATAATTTTAAAATTTAGTCCCTT
2148962 ATACTTTTAT--TTTTAATAATTTAGTCCCTT
1 -TACTTTTATAATTTTAA-AATTTAGTCCCTT
*
2148992 TAATTTT-TAGATTTTAAAATTTA
1 TACTTTTATA-ATTTTAAAATTTA
2149015 AGTTCATTAC
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
28 6 0.13
29 14 0.31
30 15 0.33
31 10 0.22
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.54
Consensus pattern (30 bp):
TACTTTTATAATTTTAAAATTTAGTCCCTT
Found at i:2150542 original size:23 final size:23
Alignment explanation
Indices: 2150516--2150559 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
2150506 TCTAGTAGTG
*
2150516 ATTTAATTAACATGCATGAATAT
1 ATTTAATTAAAATGCATGAATAT
* *
2150539 ATTTATTTAAAATGCGTGAAT
1 ATTTAATTAAAATGCATGAAT
2150560 GTAATAGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (23 bp):
ATTTAATTAAAATGCATGAATAT
Found at i:2150716 original size:22 final size:22
Alignment explanation
Indices: 2150670--2150716 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
2150660 GCTTCCAACA
* * * *
2150670 ATATATTTTGATTTTTTTATTC
1 ATATATTTTGAATCTTTGATGC
2150692 ATATATTTTGAATCTTTGATGC
1 ATATATTTTGAATCTTTGATGC
2150714 ATA
1 ATA
2150717 CATAATTACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.06, G:0.09, T:0.57
Consensus pattern (22 bp):
ATATATTTTGAATCTTTGATGC
Found at i:2151063 original size:17 final size:17
Alignment explanation
Indices: 2151041--2151096 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
2151031 AATACTAATC
2151041 TTAAATATACCCTCTAA
1 TTAAATATACCCTCTAA
* *
2151058 TT-AA-AT-GCCTATAA
1 TTAAATATACCCTCTAA
2151072 TTTTAAATATACCCTCTAA
1 --TTAAATATACCCTCTAA
2151091 TTAAAT
1 TTAAAT
2151097 GCCTATAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
14 6 0.20
15 2 0.07
16 4 0.13
17 10 0.33
18 2 0.07
19 6 0.20
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (17 bp):
TTAAATATACCCTCTAA
Found at i:2151078 original size:33 final size:33
Alignment explanation
Indices: 2151036--2151106 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
2151026 GTTGAAATAC
*
2151036 TAATCTTAAATATACCCTCTAATTAAATGCCTA
1 TAATTTTAAATATACCCTCTAATTAAATGCCTA
2151069 TAATTTTAAATATACCCTCTAATTAAATGCCTA
1 TAATTTTAAATATACCCTCTAATTAAATGCCTA
2151102 TAATT
1 TAATT
2151107 AGGGTTGGGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (33 bp):
TAATTTTAAATATACCCTCTAATTAAATGCCTA
Found at i:2156433 original size:44 final size:44
Alignment explanation
Indices: 2156370--2156458 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
2156360 TTCCATTTAC
2156370 AAAACCATAAAAACTTTAAAAACCGATCCATTTAATAAAGAAAA
1 AAAACCATAAAAACTTTAAAAACCGATCCATTTAATAAAGAAAA
2156414 AAAACCATAAAAACTTTAAAAACCGATCCATTTAATAAAGAAAA
1 AAAACCATAAAAACTTTAAAAACCGATCCATTTAATAAAGAAAA
2156458 A
1 A
2156459 GGACTAATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.60, C:0.16, G:0.04, T:0.20
Consensus pattern (44 bp):
AAAACCATAAAAACTTTAAAAACCGATCCATTTAATAAAGAAAA
Found at i:2161991 original size:29 final size:30
Alignment explanation
Indices: 2161937--2161993 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
2161927 AAGAACATAC
* **
2161937 AGAAAACAGTTTAAAACTTTCCCAAATTAA
1 AGAAAACAGTTAAAAACTTTAACAAATTAA
2161967 AGAAAA-AGTTAAAAACTTTAACAAATT
1 AGAAAACAGTTAAAAACTTTAACAAATT
2161994 TCAGCATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.26
Consensus pattern (30 bp):
AGAAAACAGTTAAAAACTTTAACAAATTAA
Found at i:2166654 original size:15 final size:16
Alignment explanation
Indices: 2166634--2166672 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
2166624 AATTTTTTAA
2166634 AAATTATAAAAAT-AT
1 AAATTATAAAAATAAT
*
2166649 AAATTATTAAAATAAT
1 AAATTATAAAAATAAT
2166665 AAATTATA
1 AAATTATA
2166673 TTTTTATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATTATAAAAATAAT
Found at i:2166702 original size:24 final size:24
Alignment explanation
Indices: 2166623--2166702 Score: 58
Period size: 24 Copynumber: 3.3 Consensus size: 24
2166613 AATTTTGATT
*
2166623 TAATTTTTTAAAAATTATAAAAATATA
1 TAATTTATT-AAAA-TA-AAAAATATA
*
2166650 -AA-TTATTAAAATAATAAAT-TA
1 TAATTTATTAAAATAAAAAATATA
* **
2166671 TATTTTTATTATCATAAAAAATATA
1 TA-ATTTATTAAAATAAAAAATATA
2166696 TAATTTA
1 TAATTTA
2166703 ATTTCTACTG
Statistics
Matches: 42, Mismatches: 7, Indels: 11
0.70 0.12 0.18
Matches are distributed among these distances:
21 2 0.05
22 6 0.14
23 2 0.05
24 22 0.52
25 8 0.19
26 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (24 bp):
TAATTTATTAAAATAAAAAATATA
Found at i:2167872 original size:20 final size:21
Alignment explanation
Indices: 2167837--2167876 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
2167827 TTCAAAGTTC
*
2167837 AATTTAAAATTTAAGATTCAG
1 AATTTAAAATTCAAGATTCAG
2167858 AATTT-AAATTCAAGATTCA
1 AATTTAAAATTCAAGATTCA
2167877 AGGTTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.38
Consensus pattern (21 bp):
AATTTAAAATTCAAGATTCAG
Found at i:2177073 original size:21 final size:22
Alignment explanation
Indices: 2177049--2177131 Score: 75
Period size: 22 Copynumber: 3.8 Consensus size: 22
2177039 TATAACTCTA
2177049 AAAATAAAAATATATTT-TAAT
1 AAAATAAAAATATATTTATAAT
* *
2177070 AAAA-ACAAAATATTTTTTGTAAT
1 AAAATA-AAAATA-TATTTATAAT
*
2177093 AAAAT-AAAATCTATTTAATAAT
1 AAAATAAAAATATATTT-ATAAT
*
2177115 AAAAT-AAAATCTATTTA
1 AAAATAAAAATATATTTA
2177132 ATCTTTAGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
20 1 0.02
21 15 0.28
22 29 0.55
23 8 0.15
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (22 bp):
AAAATAAAAATATATTTATAAT
Found at i:2177124 original size:22 final size:22
Alignment explanation
Indices: 2177089--2177133 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
2177079 ATATTTTTTG
2177089 TAATAAAATAAAATCTATTTAA
1 TAATAAAATAAAATCTATTTAA
2177111 TAATAAAATAAAATCTATTTAA
1 TAATAAAATAAAATCTATTTAA
2177133 T
1 T
2177134 CTTTAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
TAATAAAATAAAATCTATTTAA
Found at i:2177656 original size:30 final size:30
Alignment explanation
Indices: 2177622--2177681 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
2177612 CCACAACACA
*
2177622 GTCAACAAACAAATGAACCCAGGAGAACCT
1 GTCAACAAACAAATGAACCCAAGAGAACCT
2177652 GTCAACAAACAAATGAACCCAAGAGAACCT
1 GTCAACAAACAAATGAACCCAAGAGAACCT
2177682 TTCTGCTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.48, C:0.27, G:0.15, T:0.10
Consensus pattern (30 bp):
GTCAACAAACAAATGAACCCAAGAGAACCT
Found at i:2182303 original size:16 final size:16
Alignment explanation
Indices: 2182267--2182297 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2182257 TAACTATGAA
2182267 AATAAAAATATATTTT
1 AATAAAAATATATTTT
2182283 AATAAAAATA-ATTTT
1 AATAAAAATATATTTT
2182298 TTATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATAAAAATATATTTT
Found at i:2182323 original size:19 final size:19
Alignment explanation
Indices: 2182265--2182324 Score: 50
Period size: 19 Copynumber: 3.1 Consensus size: 19
2182255 TATAACTATG
2182265 AAAATAAAAATATATTTTAAT
1 AAAAT-AAAATATA-TTTAAT
* * *
2182286 AAAA-ATAATTTTTTATAAT
1 AAAATAAAATATATT-TAAT
*
2182305 AAAATAAAATCTATTTAAT
1 AAAATAAAATATATTTAAT
2182324 A
1 A
2182325 TTTAGAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
18 2 0.06
19 18 0.58
20 7 0.23
21 4 0.13
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAATAAAATATATTTAAT
Found at i:2190827 original size:21 final size:21
Alignment explanation
Indices: 2190775--2190829 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
2190765 TTCAAAACAA
2190775 AATTAACTTA-TT-AATTATT
1 AATTAACTTATTTAAATTATT
*
2190794 AATTAA-TAAATTTAAATTATT
1 AATTAACT-TATTTAAATTATT
2190815 AATTAACTTATTTAA
1 AATTAACTTATTTAA
2190830 GTATGAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 1 0.03
19 7 0.23
20 2 0.07
21 19 0.63
22 1 0.03
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
AATTAACTTATTTAAATTATT
Found at i:2190899 original size:14 final size:14
Alignment explanation
Indices: 2190880--2190909 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2190870 TTGAACTCAA
2190880 AATTTAAATAATTT
1 AATTTAAATAATTT
*
2190894 AATTTAATTAATTT
1 AATTTAAATAATTT
2190908 AA
1 AA
2190910 AATTTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTTAAATAATTT
Found at i:2201187 original size:40 final size:40
Alignment explanation
Indices: 2201143--2201366 Score: 326
Period size: 40 Copynumber: 5.7 Consensus size: 40
2201133 GACTTAAGGT
*
2201143 CCGCAGGCTTTGTGCTGGAATTGTATCTGGGCTTAAAGAC
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * *
2201183 CCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* **
2201223 CCGCAGGCTTTGTGCTGGAATTGTATCCGGACTT-AAGGT
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
2201262 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * *
2201302 CCACAGGCTTCGTGCTGGAATTGTATCTGAGCTTAAAGA-
1 CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
*
2201341 CCGCAGGCTTCGTGCTGGAATTGTAT
1 CCGCAGGCTTTGTGCTGGAATTGTAT
2201367 TCAGACTAGA
Statistics
Matches: 165, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 61 0.37
40 104 0.63
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (40 bp):
CCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGAC
Found at i:2201284 original size:119 final size:118
Alignment explanation
Indices: 2201127--2201366 Score: 392
Period size: 119 Copynumber: 2.0 Consensus size: 118
2201117 ATTTGATGTA
* *
2201127 TATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCT
* *
2201192 AT-ATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTG
66 -TCATGCTGGAATTATATCCGAGCTTAAAGA-CCGCAGGCTTCGTGCTGGAATTG
2201246 TATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCT
* * *
2201311 TCGTGCTGGAATTGTATCTGAGCTTAAAGACCGCAGGCTTCGTGCTGGAATTG
66 TCATGCTGGAATTATATCCGAGCTTAAAGACCGCAGGCTTCGTGCTGGAATTG
2201364 TAT
1 TAT
2201367 TCAGACTAGA
Statistics
Matches: 113, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
118 26 0.23
119 87 0.77
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (118 bp):
TATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCCGGGCTTAAAGACCCACAGGCT
TCATGCTGGAATTATATCCGAGCTTAAAGACCGCAGGCTTCGTGCTGGAATTG
Found at i:2201363 original size:79 final size:77
Alignment explanation
Indices: 2201146--2201366 Score: 316
Period size: 79 Copynumber: 2.8 Consensus size: 77
2201136 TTAAGGTCCG
* *
2201146 CAGGCTTTGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCC
1 CAGGCTTTGTGCTGGAATTGTATCT-GGCTTAAAGA-CCGCAGGCT-TGTGCTGGAATTGTATCC
*
2201211 GGGCTTAAAGACCCG
63 GGGCTTAAAGACCCA
* * *
2201226 CAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCCG
1 CAGGCTTTGTGCTGGAATTGTATCTGG-CTTAAAGACCGCAGGC-TTGTGCTGGAATTGTATCCG
2201291 GGCTTAAAGACCCA
64 GGCTTAAAGACCCA
*
2201305 CAGGCTTCGTGCTGGAATTGTATCTGAGCTTAAAGACCGCAGGCTTCGTGCTGGAATTGTAT
1 CAGGCTTTGTGCTGGAATTGTATCTG-GCTTAAAGACCGCAGGCTT-GTGCTGGAATTGTAT
2201367 TCAGACTAGA
Statistics
Matches: 127, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
78 2 0.02
79 93 0.73
80 32 0.25
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (77 bp):
CAGGCTTTGTGCTGGAATTGTATCTGGCTTAAAGACCGCAGGCTTGTGCTGGAATTGTATCCGGG
CTTAAAGACCCA
Found at i:2205422 original size:48 final size:46
Alignment explanation
Indices: 2205362--2205539 Score: 157
Period size: 47 Copynumber: 3.8 Consensus size: 46
2205352 TGGTTTAGCA
2205362 TCCGAAACTCGTTGAGTTGAGTCCGAGCTTCACTTATGGATGCGGAATG
1 TCCG-AACTCGTTGAGTTGAGTCCGAG-TTCACTTATGGATGCGGAA-G
*** * * *
2205411 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACT-AGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGGAAG
* **
2205458 TCCGAGCTCGTTGAGTTGAGTCCGAG-TCACTTAT-GATGCAAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGAA-G
* *
2205503 CCCGAGCTCGTTGAGTTGAGTTCCGAGTTCACTTATG
1 TCCGAACTCGTTGAGTTGAG-TCCGAGTTCACTTATG
2205540 TCGGTTACAT
Statistics
Matches: 104, Mismatches: 16, Indels: 19
0.75 0.12 0.14
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
45 22 0.21
46 8 0.08
47 36 0.35
48 26 0.25
49 8 0.08
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGAAG
Found at i:2205523 original size:92 final size:96
Alignment explanation
Indices: 2205359--2205532 Score: 257
Period size: 92 Copynumber: 1.8 Consensus size: 96
2205349 GGATGGTTTA
** * *
2205359 GCATCCGAAACTCGTTGAGTTGAGTCCGAGCTTCACTTATGGATGCGGAATGTCCGAACTCGTTG
1 GCATCCGAAACTCGTTGAGTTGAGTCCGAGC-TCACTTATGGATGCAAAACGCCCGAACTCGTTG
2205424 AGTTGAG-TCCGAGTTCGAGAGATGTAACTAG
65 AGTTGAGTTCCGAGTTCGAGAGATGTAACTAG
* *
2205455 GCATCCG-AGCTCGTTGAGTTGAGTCCGAG-TCACTTAT-GATGCAAAACGCCCGAGCTCGTTGA
1 GCATCCGAAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCAAAACGCCCGAACTCGTTGA
2205517 GTTGAGTTCCGAGTTC
66 GTTGAGTTCCGAGTTC
2205533 ACTTATGTCG
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
92 26 0.37
93 17 0.24
95 21 0.30
96 7 0.10
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (96 bp):
GCATCCGAAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCAAAACGCCCGAACTCGTTGA
GTTGAGTTCCGAGTTCGAGAGATGTAACTAG
Found at i:2209341 original size:46 final size:45
Alignment explanation
Indices: 2209291--2209465 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
2209281 TGGTTTAGCA
*
2209291 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAA-G
*** *
2209337 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-AA-T-GCGAAG
* *
2209384 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAA-G
* *
2209430 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
2209466 TGCGGGTTAC
Statistics
Matches: 110, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 2 0.02
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAAG
Found at i:2209447 original size:93 final size:93
Alignment explanation
Indices: 2209288--2209458 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
2209278 GGATGGTTTA
* * * *
2209288 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGT
2209353 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
2209381 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGT
2209446 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
2209459 ACTTATGTGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:2221489 original size:39 final size:39
Alignment explanation
Indices: 2221435--2221578 Score: 207
Period size: 39 Copynumber: 3.7 Consensus size: 39
2221425 TTCAATGATG
* *
2221435 TATATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
2221474 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
2221513 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * * *
2221552 TATGTCCGGGCTAAAGTTCCGCAGGCT
1 TATATCCGGACTTAAGGTCCGCAGGCT
2221579 TCGAGCTGGT
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 97 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:2222980 original size:50 final size:50
Alignment explanation
Indices: 2222902--2223093 Score: 287
Period size: 50 Copynumber: 3.8 Consensus size: 50
2222892 GATAATAACA
* ** *
2222902 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
2222952 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
2223002 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
2223052 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
2223094 TTACCCAAAT
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
49 7 0.05
50 121 0.95
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:2223209 original size:13 final size:13
Alignment explanation
Indices: 2223188--2223219 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2223178 GCTTGGATCA
*
2223188 TCATCAAATAAAT
1 TCATAAAATAAAT
2223201 TCATAAAATAAAT
1 TCATAAAATAAAT
2223214 TCATAA
1 TCATAA
2223220 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:2223466 original size:30 final size:30
Alignment explanation
Indices: 2223431--2223488 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
2223421 CCTCGACTCT
*
2223431 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
2223461 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
2223489 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:2230505 original size:50 final size:50
Alignment explanation
Indices: 2230427--2230614 Score: 288
Period size: 50 Copynumber: 3.8 Consensus size: 50
2230417 GATAATAACA
* ** *
2230427 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
2230477 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
2230527 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
2230577 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAC
2230615 TCTTTACCCA
Statistics
Matches: 125, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
49 7 0.06
50 118 0.94
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:2230733 original size:13 final size:13
Alignment explanation
Indices: 2230712--2230743 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2230702 GCTTGGATCA
*
2230712 TCATCAAATAAAT
1 TCATAAAATAAAT
2230725 TCATAAAATAAAT
1 TCATAAAATAAAT
2230738 TCATAA
1 TCATAA
2230744 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:2230990 original size:30 final size:30
Alignment explanation
Indices: 2230955--2231012 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
2230945 CCTCGACTCT
*
2230955 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
2230985 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
2231013 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Done.