Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 66 of 325
Found at i:23639076 original size:39 final size:41
Alignment explanation
Indices: 23639013--23639098 Score: 115
Period size: 40 Copynumber: 2.1 Consensus size: 41
23639003 ATATAAAAAT
23639013 AATTATATTAAAAATACTATTAAATTATATA-TTATTATTA
1 AATTATATTAAAAATACTATTAAATTATATATTTATTATTA
* *
23639053 AATTATATT-AAAATA-TGATTAAATTATTTATTTTTTATTA
1 AATTATATTAAAAATACT-ATTAAATTATATATTTATTATTA
*
23639093 ACTTAT
1 AATTAT
23639099 TTTTAATAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 18 0.44
40 22 0.54
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (41 bp):
AATTATATTAAAAATACTATTAAATTATATATTTATTATTA
Found at i:23639317 original size:16 final size:16
Alignment explanation
Indices: 23639296--23639335 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
23639286 TGAATTACTG
* *
23639296 ATTACAGCTCTATTCC
1 ATTACAACTATATTCC
*
23639312 ATTACAACTATATTTC
1 ATTACAACTATATTCC
23639328 ATTACAAC
1 ATTACAAC
23639336 GAACCAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.38
Consensus pattern (16 bp):
ATTACAACTATATTCC
Found at i:23639798 original size:21 final size:20
Alignment explanation
Indices: 23639764--23639802 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
23639754 AAGGGTTTTT
23639764 TTTTGGTTAATTTACAAATAA
1 TTTTGGTTAATTTA-AAATAA
**
23639785 TTTTGGTTTTTTTAAAAT
1 TTTTGGTTAATTTAAAAT
23639803 GAAACAAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (20 bp):
TTTTGGTTAATTTAAAATAA
Found at i:23640252 original size:30 final size:27
Alignment explanation
Indices: 23640189--23640253 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
23640179 TTTTTTATTT
*
23640189 ATATTATAAAAATATTATTTAATTAAA
1 ATATTATAAAAATATTATTAAATTAAA
* *
23640216 ATATTATAAATTATATTAATTAAAGTTAAG
1 ATATTATAAA-AATATT-ATTAAA-TTAAA
23640246 ATATTATA
1 ATATTATA
23640254 TTATAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 10 0.31
28 5 0.16
29 5 0.16
30 12 0.38
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (27 bp):
ATATTATAAAAATATTATTAAATTAAA
Found at i:23640450 original size:9 final size:9
Alignment explanation
Indices: 23640405--23640452 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
23640395 TATTAGAGTG
23640405 TATT-ATTA
1 TATTAATTA
23640413 TTATTAATT-
1 -TATTAATTA
23640422 TATTAATT-
1 TATTAATTA
23640430 TA-TAATTTA
1 TATTAA-TTA
23640439 TATTAATTA
1 TATTAATTA
23640448 TATTA
1 TATTA
23640453 TGAGATTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
7 3 0.09
8 12 0.34
9 14 0.40
10 6 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TATTAATTA
Found at i:23640686 original size:31 final size:31
Alignment explanation
Indices: 23640615--23640687 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
23640605 ATTAGAAAAT
* * *
23640615 AGATATTTATTAATTATTATTATTAAGTTAA
1 AGATATTTATTAATTATAATAATTAAATTAA
*
23640646 AAATATTTATTAATTA-AATAATTAAATTATA
1 AGATATTTATTAATTATAATAATTAAATTA-A
*
23640677 AGATTTTTATT
1 AGATATTTATT
23640688 TGATAAACAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 10 0.29
31 25 0.71
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (31 bp):
AGATATTTATTAATTATAATAATTAAATTAA
Found at i:23641381 original size:23 final size:22
Alignment explanation
Indices: 23641354--23641416 Score: 76
Period size: 23 Copynumber: 2.9 Consensus size: 22
23641344 TTTGCCAATT
23641354 AGGCACTTTATGTGTCGTATTTC
1 AGGCAC-TTATGTGTCGTATTTC
**
23641377 AGGCACCTCGTGTGTCG--TTTC
1 AGGCA-CTTATGTGTCGTATTTC
23641398 AGGCACTTATGTGTCGTAT
1 AGGCACTTATGTGTCGTAT
23641417 ACTGATCAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
20 9 0.27
21 9 0.27
22 1 0.03
23 13 0.39
24 1 0.03
ACGTcount: A:0.16, C:0.21, G:0.25, T:0.38
Consensus pattern (22 bp):
AGGCACTTATGTGTCGTATTTC
Found at i:23650812 original size:46 final size:46
Alignment explanation
Indices: 23650745--23650836 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
23650735 CACTACTCAC
* *
23650745 TGATCAGGTAGCCGGAGCTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * *
23650791 TGATCAGGTAGCCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
23650837 AGCTACCACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:23650829 original size:31 final size:31
Alignment explanation
Indices: 23650791--23650849 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
23650781 AAGTAGCCGA
23650791 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
23650822 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
23650850 TACTTGCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:23650930 original size:50 final size:50
Alignment explanation
Indices: 23650829--23651055 Score: 355
Period size: 50 Copynumber: 4.5 Consensus size: 50
23650819 CATTGATCAG
* * * * *
23650829 GTAGCCGAAGCTACCACTTTTTACTTGCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
* * *
23650880 GTAGCTGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
*
23650930 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
*
23650980 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
23651030 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
23651056 GTTGCCATGG
Statistics
Matches: 162, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
50 140 0.86
51 22 0.14
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
Found at i:23655502 original size:8 final size:8
Alignment explanation
Indices: 23655484--23655533 Score: 55
Period size: 9 Copynumber: 5.8 Consensus size: 8
23655474 ATTATTAGAG
23655484 TTTATTAAT
1 TTTA-TAAT
23655493 TTTATAATT
1 TTTATAA-T
*
23655502 TATTATATT
1 T-TTATAAT
23655511 TTTATAAT
1 TTTATAAT
23655519 TTTAATAAT
1 TTT-ATAAT
23655528 TTTATA
1 TTTATA
23655534 TAAATTTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
8 15 0.42
9 16 0.44
10 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTATAAT
Found at i:23655520 original size:9 final size:9
Alignment explanation
Indices: 23655492--23655552 Score: 63
Period size: 9 Copynumber: 6.7 Consensus size: 9
23655482 AGTTTATTAA
23655492 TTTTATAAT
1 TTTTATAAT
23655501 TTATTAT-AT
1 TT-TTATAAT
23655510 TTTTATAAT
1 TTTTATAAT
*
23655519 TTTAATAAT
1 TTTTATAAT
*
23655528 TTTATATAAA
1 TTT-TATAAT
23655538 TTTTA-ACAT
1 TTTTATA-AT
23655547 TTTTAT
1 TTTTAT
23655553 TATATTTTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
8 5 0.12
9 27 0.63
10 11 0.26
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:23655541 original size:11 final size:10
Alignment explanation
Indices: 23655484--23655542 Score: 51
Period size: 9 Copynumber: 6.4 Consensus size: 10
23655474 ATTATTAGAG
23655484 TTTAT-TAA-
1 TTTATATAAT
23655492 TTT-TATAA-
1 TTTATATAAT
23655500 TTTAT-TATAT
1 TTTATATA-AT
23655510 TTT-TATAAT
1 TTTATATAAT
23655519 TTTA-ATAAT
1 TTTATATAAT
23655528 TTTATATAAAT
1 TTTATAT-AAT
23655539 TTTA
1 TTTA
23655543 ACATTTTTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
7 1 0.02
8 11 0.26
9 17 0.40
10 7 0.16
11 7 0.16
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TTTATATAAT
Found at i:23655559 original size:19 final size:18
Alignment explanation
Indices: 23655508--23655560 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
23655498 AATTTATTAT
*
23655508 ATTTTTA-TAATTTTAATA
1 ATTTTTATTAATTTTAA-C
*
23655526 ATTTTATATAAATTTTAAC
1 ATTTT-TATTAATTTTAAC
23655545 ATTTTTATTATATTTT
1 ATTTTTATTA-ATTTT
23655561 TCTGTTTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 9 0.31
19 12 0.41
20 8 0.28
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTTATTAATTTTAAC
Found at i:23655715 original size:31 final size:31
Alignment explanation
Indices: 23655680--23655746 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
23655670 AACGAAAATT
* *
23655680 ATTAAC-AAAAAAATTTTAATTGATTATTTTA
1 ATTAACTAAAAAAA-CTTAATTAATTATTTTA
*
23655711 ATTAACTATAAAAACTTAATTAATTATTTTA
1 ATTAACTAAAAAAACTTAATTAATTATTTTA
23655742 ATTAA
1 ATTAA
23655747 TAACAATGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 26 0.81
32 6 0.19
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (31 bp):
ATTAACTAAAAAAACTTAATTAATTATTTTA
Found at i:23657736 original size:15 final size:15
Alignment explanation
Indices: 23657717--23657752 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
23657707 ATTATCTCTA
23657717 ATATATGTATATATT
1 ATATATGTATATATT
* *
23657732 GTATATGTTTATATT
1 ATATATGTATATATT
23657747 ATATAT
1 ATATAT
23657753 ATATTATTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (15 bp):
ATATATGTATATATT
Found at i:23663271 original size:19 final size:18
Alignment explanation
Indices: 23663247--23663294 Score: 78
Period size: 19 Copynumber: 2.6 Consensus size: 18
23663237 ACGTAAAAAG
23663247 TAAAAAGTAAAAGATGAAA
1 TAAAAA-TAAAAGATGAAA
23663266 TAAAAATAAAAAGATGAAA
1 TAAAAAT-AAAAGATGAAA
23663285 TAAAAATAAA
1 TAAAAATAAA
23663295 TAACAAAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (18 bp):
TAAAAATAAAAGATGAAA
Found at i:23664214 original size:16 final size:16
Alignment explanation
Indices: 23664184--23664231 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
23664174 GAAAATTAAT
23664184 ATAAAATCT-AAAAT-A
1 ATAAAAT-TAAAAATAA
23664199 ATAATAATTAAAAATAA
1 ATAA-AATTAAAAATAA
23664216 ATAAAATT-AAAATAA
1 ATAAAATTAAAAATAA
23664231 A
1 A
23664232 CTTAAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.43
16 12 0.40
17 5 0.17
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAATTAAAAATAA
Found at i:23664230 original size:11 final size:11
Alignment explanation
Indices: 23664175--23664245 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
23664165 ATAGCTTAAG
*
23664175 AAAATTAATAT
1 AAAATTAAAAT
23664186 AAAATCTAAAAT
1 AAAAT-TAAAAT
*
23664198 AATAA-T-AATT
1 AA-AATTAAAAT
*
23664208 AAAAAT-AAAT
1 AAAATTAAAAT
23664218 AAAATTAAAAT
1 AAAATTAAAAT
*
23664229 AAACTTAAAAT
1 AAAATTAAAAT
*
23664240 AGAATT
1 AAAATT
23664246 TCCTATTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 2 0.04
10 14 0.29
11 24 0.49
12 7 0.14
13 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:23678612 original size:53 final size:53
Alignment explanation
Indices: 23678537--23678643 Score: 180
Period size: 53 Copynumber: 2.0 Consensus size: 53
23678527 CCAATTTCTG
23678537 TTTTAATTCATGCTTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
1 TTTTAATTCATGCTTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
* *
23678590 TTTTAATTCATG-TTTTCAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCC
1 TTTTAATTCATGCTTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
23678643 T
1 T
23678644 CATGACACGC
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
52 5 0.10
53 46 0.90
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (53 bp):
TTTTAATTCATGCTTTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
Found at i:23678689 original size:139 final size:135
Alignment explanation
Indices: 23678402--23678730 Score: 427
Period size: 139 Copynumber: 2.4 Consensus size: 135
23678392 GTATTTTGAT
* * * *
23678402 GTTTTATTTC-TG-TTTTCAAAAATCGATTCATATTCCGAGAGGTGAGTTGAGCCTTTTAATTTT
1 GTTTTAATTCATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
* *
23678465 TTTAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTCCA
66 TTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GCTCACACGCTGAGGTATTTCCA
*
23678530 ATTTCT
130 ATTTCC
*
23678536 GTTTTAATTCATGCTTTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTTTAATTCA
1 GTTTTAATTCATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATT--
* *
23678600 TGTTTTCAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCC-T-CATGACACGCTGAGGTATT
64 T-TTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGC-TCACACGCTGAGGTATT
*
23678663 TTCAATTTCC
126 TCCAATTTCC
*
23678673 GTTTTTCAAGTT-ATGCTTTTCAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCT
1 G-TTTT-AA-TTCATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
23678731 CAGGGCACGC
Statistics
Matches: 171, Mismatches: 13, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
134 9 0.05
135 41 0.24
136 6 0.04
137 25 0.15
138 9 0.05
139 45 0.26
140 36 0.21
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (135 bp):
GTTTTAATTCATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
TTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGCTCACACGCTGAGGTATTTCCAA
TTTCC
Found at i:23678783 original size:19 final size:19
Alignment explanation
Indices: 23678748--23678784 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23678738 CGCTGATGTA
* *
23678748 TTTTCAATTTCTGTTTTTT
1 TTTTCAATTTATATTTTTT
23678767 TTTTCAATTTATATTTTT
1 TTTTCAATTTATATTTTT
23678785 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.08, G:0.03, T:0.73
Consensus pattern (19 bp):
TTTTCAATTTATATTTTTT
Found at i:23678816 original size:92 final size:92
Alignment explanation
Indices: 23678602--23678857 Score: 360
Period size: 92 Copynumber: 2.8 Consensus size: 92
23678592 TTAATTCATG
* * *
23678602 TTTTCAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCCTCATGACACGCTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
* *
23678667 ATTTCCG-----TTTTTCAAGTTATGC
66 ATTTCTGTTTTTTTTTTCAAGTTATAC
* *
23678689 TTTTCAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCAGGGCACGCTGATGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
* *
23678754 ATTTCTGTTTTTTTTTTCAATTTATAT
66 ATTTCTGTTTTTTTTTTCAAGTTATAC
* *
23678781 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCGGGGCACGCTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
* *
23678846 AATTCTATTTTT
66 ATTTCTGTTTTT
23678858 CCAAAATCAA
Statistics
Matches: 149, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
87 66 0.44
92 83 0.56
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (92 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
ATTTCTGTTTTTTTTTTCAAGTTATAC
Found at i:23678896 original size:73 final size:73
Alignment explanation
Indices: 23678767--23678933 Score: 244
Period size: 73 Copynumber: 2.3 Consensus size: 73
23678757 TCTGTTTTTT
* * * *
23678767 TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCGGGGCACG
1 TTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
23678832 CTGAGGTA
66 CTGAGGTA
* * * *
23678840 TTTTCAAATTCTATTTTTCCAAAATCAACTCATATTGTGAGAGGTGGGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
23678905 CTGAGGTA
66 CTGAGGTA
* *
23678913 ATTTCAATTTCTGTTTTTCAA
1 TTTTCAATTTCTATTTTTCAA
23678934 TTTCTACTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
73 82 1.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (73 bp):
TTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTA
Found at i:23678939 original size:87 final size:87
Alignment explanation
Indices: 23678840--23679021 Score: 292
Period size: 87 Copynumber: 2.1 Consensus size: 87
23678830 CGCTGAGGTA
* * * * *
23678840 TTTTCAAATTCTATTTTTCCAAAATCAACTCATATTGTGAGAGGTGGGTTGAGCCTCAGGACACG
1 TTTTCAAATTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACG
*
23678905 CTGAGGTAATTTCAATTTCTGT
66 CTGAGGTAATTTCAATTTCTAT
*
23678927 TTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACG
1 TTTTCAAATTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACG
23678992 CTGAGGTAATTTCAATTTCTAT
66 CTGAGGTAATTTCAATTTCTAT
*
23679014 GTTTCAAA
1 TTTTCAAA
23679022 AATCAACTCA
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (87 bp):
TTTTCAAATTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACG
CTGAGGTAATTTCAATTTCTAT
Found at i:23678944 original size:14 final size:14
Alignment explanation
Indices: 23678914--23678947 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
23678904 GCTGAGGTAA
**
23678914 TTTCAATTTCTGTT
1 TTTCAATTTCTACT
23678928 TTTCAATTTCTACT
1 TTTCAATTTCTACT
23678942 TTTCAA
1 TTTCAA
23678948 AAATCAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.03, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTACT
Found at i:23679026 original size:160 final size:160
Alignment explanation
Indices: 23678690--23679093 Score: 574
Period size: 160 Copynumber: 2.5 Consensus size: 160
23678680 AAGTTATGCT
* *
23678690 TTTCAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCAGGGCACGCTGATGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
* *
23678755 TTTCTGTTTTTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGG
66 TTTCTG-----TTTTTCAATTTATACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* ** * *
23678820 CCTCGGGGCACGCTGAGGTATTTTCAAATTCTATT
126 CCTCAGAACACGCTGAGGTAATTTCAAATTCTATG
* * * * *
23678855 TTTCCAAAATCAACTCATATTGTGAGAGGTGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
*
23678920 TTTCTGTTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 TTTCTGTTTTTCAATTTATACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
23678985 GAACACGCTGAGGTAATTTCAATTTCTATG
131 GAACACGCTGAGGTAATTTCAAATTCTATG
* * *
23679015 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCGGGGCATGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
* *
23679080 ATTCTATTTTTCAA
66 TTTCTGTTTTTCAA
23679094 AAATCAATTC
Statistics
Matches: 213, Mismatches: 26, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
160 149 0.70
165 64 0.30
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (160 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
TTTCTGTTTTTCAATTTATACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
GAACACGCTGAGGTAATTTCAAATTCTATG
Found at i:23679047 original size:73 final size:72
Alignment explanation
Indices: 23678928--23679130 Score: 282
Period size: 73 Copynumber: 2.8 Consensus size: 72
23678918 AATTTCTGTT
23678928 TTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGC
1 TTTCAATTTCTA-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGC
23678993 TGAGGTAA
65 TGAGGTAA
* * ** *
23679001 TTTCAATTTCTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCGGGGCATGC
1 TTTCAATTTCTAT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGC
*
23679066 TGAGGTAT
65 TGAGGTAA
* * **
23679074 TTTCAAATTCTATTTTTCAAAAATCAATTCATATTGCGAGAAATGAGTTGAG-CTCAG
1 TTTCAATTTCTA-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
23679131 GATCACATGC
Statistics
Matches: 116, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
72 5 0.04
73 110 0.95
74 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
TTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCT
GAGGTAA
Found at i:23679254 original size:44 final size:44
Alignment explanation
Indices: 23679184--23679287 Score: 136
Period size: 44 Copynumber: 2.4 Consensus size: 44
23679174 ACACCAGACT
* * * *
23679184 TTGTACCCCTGAAGTTGCAGTGGAGCAGGTCAAAGTTACAAGTC
1 TTGTATCCCTGAAGTTACAATAGAGCAGGTCAAAGTTACAAGTC
* *
23679228 TTGTATCCCTGAAGTTACAATAGAGCAGGTTAAAGTTGCAAGTC
1 TTGTATCCCTGAAGTTACAATAGAGCAGGTCAAAGTTACAAGTC
* *
23679272 TTGTCTCCCTAAAGTT
1 TTGTATCCCTGAAGTT
23679288 GCAGTGGAGC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (44 bp):
TTGTATCCCTGAAGTTACAATAGAGCAGGTCAAAGTTACAAGTC
Found at i:23681033 original size:3 final size:3
Alignment explanation
Indices: 23681010--23681057 Score: 62
Period size: 3 Copynumber: 16.0 Consensus size: 3
23681000 TACTTTAATT
* *
23681010 TTA TTA TTG TTA TAA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
23681055 TTA
1 TTA
23681058 GTGTATAGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23681361 original size:15 final size:15
Alignment explanation
Indices: 23681342--23681377 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
23681332 ATTATCTCTA
23681342 ATATATGTATATATT
1 ATATATGTATATATT
* *
23681357 GTATATGTTTATATT
1 ATATATGTATATATT
23681372 ATATAT
1 ATATAT
23681378 ATTATTTCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (15 bp):
ATATATGTATATATT
Found at i:23683796 original size:21 final size:21
Alignment explanation
Indices: 23683772--23683813 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
23683762 TATAAAATAT
*
23683772 AAATATTAAATATTTTTAAAA
1 AAATATTAAATATTTATAAAA
*
23683793 AAATATTAATTATTTATAAAA
1 AAATATTAAATATTTATAAAA
23683814 TTTTATTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
AAATATTAAATATTTATAAAA
Found at i:23683831 original size:20 final size:20
Alignment explanation
Indices: 23683808--23683853 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
23683798 TTAATTATTT
23683808 ATAAAATT-TTATTTGAAAAA
1 ATAAAATTATT-TTTGAAAAA
* *
23683828 AT-AAATTATTTTTTAAATA
1 ATAAAATTATTTTTGAAAAA
23683847 ATAAAAT
1 ATAAAAT
23683854 ATAACCATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAAAATTATTTTTGAAAAA
Found at i:23683901 original size:17 final size:19
Alignment explanation
Indices: 23683865--23683921 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
23683855 TAACCATTGC
23683865 AAATTTAAATATATAAAAT
1 AAATTTAAATATATAAAAT
*
23683884 AAATTTCAATA-A-AAAAT
1 AAATTTAAATATATAAAAT
* *
23683901 -AATTT-TATATATAATAT
1 AAATTTAAATATATAAAAT
23683918 AAAT
1 AAAT
23683922 ATTACACAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 3 0.09
16 6 0.19
17 9 0.28
18 4 0.12
19 10 0.31
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
AAATTTAAATATATAAAAT
Found at i:23685557 original size:21 final size:20
Alignment explanation
Indices: 23685532--23685592 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
23685522 TTTCTTTCAG
*
23685532 ATTTTAAGTTTTGAGTTTTA
1 ATTTTAAGTTTTGAATTTTA
*
23685552 TATTTTAGGTTTTTGAATTTTA
1 -ATTTTAAG-TTTTGAATTTTA
*
23685574 AATTTAGAGTTTT-AATTTT
1 ATTTTA-AGTTTTGAATTTT
23685593 TTTTATATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
20 6 0.18
21 16 0.47
22 12 0.35
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (20 bp):
ATTTTAAGTTTTGAATTTTA
Found at i:23685572 original size:22 final size:21
Alignment explanation
Indices: 23685532--23685586 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
23685522 TTTCTTTCAG
* *
23685532 ATTTTAAG-TTTTGAGTTTTA
1 ATTTTAGGTTTTTGAATTTTA
23685552 TATTTTAGGTTTTTGAATTTTA
1 -ATTTTAGGTTTTTGAATTTTA
*
23685574 AATTTAGAGTTTT
1 ATTTTAG-GTTTT
23685587 AATTTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 13 0.45
22 16 0.55
ACGTcount: A:0.25, C:0.00, G:0.15, T:0.60
Consensus pattern (21 bp):
ATTTTAGGTTTTTGAATTTTA
Found at i:23689313 original size:64 final size:64
Alignment explanation
Indices: 23689103--23689313 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
23689093 CTGGGCTAGA
*
23689103 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
23689167 GCCCATTTCAAAATAC-ATGCAACACCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
23689229 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
23689240 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
23689304 GCCCATTTCA
1 GCCCATTTCA
23689314 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:23689315 original size:137 final size:136
Alignment explanation
Indices: 23689069--23689354 Score: 518
Period size: 137 Copynumber: 2.1 Consensus size: 136
23689059 CATTGGGCCT
* * *
23689069 AAGCCCATTTAGGTAATAGTGGTACTGGGCTAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
23689134 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACACCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACACCAAT-AA
23689199 CATATGC
130 CATATGC
23689206 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
23689271 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACACCAATAAC
23689336 ATATGC
131 ATATGC
23689342 AAGCCCATTTGGG
1 AAGCCCATTTGGG
23689355 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 22 0.15
137 122 0.85
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACACCAATAAC
ATATGC
Found at i:23691151 original size:26 final size:26
Alignment explanation
Indices: 23691115--23691224 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
23691105 CATGAAATTC
23691115 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
23691141 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
23691167 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
23691193 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
23691219 TTATCA
1 TTATCA
23691225 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:23692868 original size:16 final size:18
Alignment explanation
Indices: 23692825--23692868 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
23692815 ACCACCAAAG
*
23692825 CAGAGAATAACACTAAAA
1 CAGAGAATAACACAAAAA
*
23692843 CAGAGGATAAC-CAAAAA
1 CAGAGAATAACACAAAAA
23692860 CA-AGAATAA
1 CAGAGAATAA
23692869 AATACAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 6 0.26
17 7 0.30
18 10 0.43
ACGTcount: A:0.61, C:0.16, G:0.14, T:0.09
Consensus pattern (18 bp):
CAGAGAATAACACAAAAA
Found at i:23693655 original size:15 final size:14
Alignment explanation
Indices: 23693627--23693681 Score: 58
Period size: 15 Copynumber: 3.8 Consensus size: 14
23693617 TTAGCTTTAA
23693627 ATATTATTCA-TGTT
1 ATATTATT-ATTGTT
23693641 ATATATATTATTGTT
1 ATAT-TATTATTGTT
* *
23693656 ATCACTATTATTTTT
1 AT-ATTATTATTGTT
23693671 ATATTATTATT
1 ATATTATTATT
23693682 ATATTATATT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
14 13 0.37
15 21 0.60
16 1 0.03
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (14 bp):
ATATTATTATTGTT
Found at i:23693755 original size:15 final size:15
Alignment explanation
Indices: 23693737--23693765 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23693727 TATATGCATA
23693737 TATATTTATTATTAT
1 TATATTTATTATTAT
23693752 TATATTTATTATTA
1 TATATTTATTATTA
23693766 ATATTATTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TATATTTATTATTAT
Found at i:23693913 original size:25 final size:25
Alignment explanation
Indices: 23693866--23694087 Score: 191
Period size: 23 Copynumber: 9.2 Consensus size: 25
23693856 TATTATTATC
*
23693866 ATTTCTAATA-TATA-TATCGTATAT
1 ATTTTTAATACTATATTAT-GTATAT
*
23693890 GTTTTT-ATA-TATATTATGTATAT
1 ATTTTTAATACTATATTATGTATAT
23693913 ATTTTTAATA-T-TATTA-GTTATAT
1 ATTTTTAATACTATATTATG-TATAT
*
23693936 ATTTTTTATACTAT-TTCATGTATAT
1 ATTTTTAATACTATATT-ATGTATAT
* *
23693961 ATTTTT-ATATTATCTTATGTATAT
1 ATTTTTAATACTATATTATGTATAT
*
23693985 ATTATCTTAATAACTATATTATGTATGT
1 ATT-T-TTAAT-ACTATATTATGTATAT
* *
23694013 ATTTTTAACACTATATTATGTACAT
1 ATTTTTAATACTATATTATGTATAT
* * *
23694038 ACTTTTAAGA-T-TATTATGTATTT
1 ATTTTTAATACTATATTATGTATAT
*
23694061 ATCTTTAATA-TATA-TATGTATAT
1 ATTTTTAATACTATATTATGTATAT
23694084 ATTT
1 ATTT
23694088 ATGTAGTATT
Statistics
Matches: 165, Mismatches: 20, Indels: 27
0.78 0.09 0.13
Matches are distributed among these distances:
22 1 0.01
23 66 0.40
24 34 0.21
25 38 0.23
26 7 0.04
27 3 0.02
28 16 0.10
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (25 bp):
ATTTTTAATACTATATTATGTATAT
Found at i:23694016 original size:52 final size:47
Alignment explanation
Indices: 23693885--23694019 Score: 143
Period size: 52 Copynumber: 2.8 Consensus size: 47
23693875 ATATATATCG
*
23693885 TATATGTTTTT-ATA-TATATTATGTATATATTTTTAATATTATTAGT
1 TATATATTTTTAATACTATATTATGTATATATTTTT-ATATTATTAGT
*
23693931 TATATATTTTTTATACTAT-TTCATGTATATATTTTTATATTATCTTA-T
1 TATATATTTTTAATACTATATT-ATGTATATATTTTTATATTA--TTAGT
*
23693979 GTATATATTATCTTAATAACTATATTATGTATGTATTTTTA
1 -TATATATT-T-TTAAT-ACTATATTATGTATATATTTTTA
23694020 ACACTATATT
Statistics
Matches: 76, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
46 10 0.13
47 11 0.14
48 18 0.24
49 11 0.14
50 1 0.01
51 4 0.05
52 19 0.25
53 2 0.03
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (47 bp):
TATATATTTTTAATACTATATTATGTATATATTTTTATATTATTAGT
Found at i:23694026 original size:77 final size:71
Alignment explanation
Indices: 23693874--23694087 Score: 186
Period size: 77 Copynumber: 2.9 Consensus size: 71
23693864 TCATTTCTAA
*
23693874 TATATATATCGTATATGTTTTTATATATATTATGTATATATTTTTAATATTATTAGTTATATATT
1 TATAT-TAT-GTATATATTTTTATATATATTATGTATATATTTTTAATATTATTAGTTATATATT
* *
23693939 TTTTATAC
64 TTTAACAC
*
23693947 TAT-TTCATGTATATATTTTTATATTATCTTATGTATATATTATCTTAATAACTATATTA-TGTA
1 TATATT-ATGTATATATTTTTATA-TATATTATGTATATATT-T-TTAAT-A-T-TATTAGT-TA
*
23694010 TGTATTTTTAACAC
58 TATATTTTTAACAC
* * * * *
23694024 TATATTATGTACATACTTTTA-AGATTATTATGTATTTATCTTTAATA-TATATA-TGTATATAT
1 TATATTATGTATATATTTTTATATA-TATTATGTATATATTTTTAATATTAT-TAGT-TATATAT
23694086 TT
63 TT
23694088 ATGTAGTATT
Statistics
Matches: 118, Mismatches: 12, Indels: 24
0.77 0.08 0.16
Matches are distributed among these distances:
70 3 0.03
71 27 0.23
72 19 0.16
73 5 0.04
74 10 0.08
75 3 0.03
76 15 0.13
77 34 0.29
78 2 0.02
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (71 bp):
TATATTATGTATATATTTTTATATATATTATGTATATATTTTTAATATTATTAGTTATATATTTT
TAACAC
Found at i:23694170 original size:50 final size:50
Alignment explanation
Indices: 23694074--23694170 Score: 119
Period size: 50 Copynumber: 1.9 Consensus size: 50
23694064 TTTAATATAT
* * *
23694074 ATATGTATATATTTATGTAGTATTATTAATAGTCATTTTTTTTATTTCTA
1 ATATGTATATATTTATGTAATATTATTAATAGTCATTATTTATATTTCTA
23694124 ATATGTATATA-TTATGTAAATATT-TTAATACTGT-ATTATTTATATTT
1 ATATGTATATATTTATGT-AATATTATTAATA--GTCATTATTTATATTT
23694171 TTTTCTTGCA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
49 12 0.29
50 27 0.66
51 2 0.05
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (50 bp):
ATATGTATATATTTATGTAATATTATTAATAGTCATTATTTATATTTCTA
Found at i:23694264 original size:25 final size:25
Alignment explanation
Indices: 23694131--23694264 Score: 99
Period size: 25 Copynumber: 5.1 Consensus size: 25
23694121 CTAATATGTA
*
23694131 TATATTATGTAAATA-TTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* * * * *
23694155 TGTATTATTTATATTTTTTTCTTGCATAT
1 TATATTATGTATA--TATTT-TT-AATAC
*
23694184 TATCTTATGTATATATTTTTTAAATAAC
1 TATATTATGTATATA-TTTTT-AAT-AC
* **
23694212 TATATTATGTATGTATTTTTAACGC
1 TATATTATGTATATATTTTTAATAC
*
23694237 TATATTATGTACATATTTTTAATAC
1 TATATTATGTATATATTTTTAATAC
23694262 TAT
1 TAT
23694265 GTTTATACTT
Statistics
Matches: 82, Mismatches: 21, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
24 10 0.12
25 25 0.30
26 3 0.04
27 12 0.15
28 19 0.23
29 13 0.16
ACGTcount: A:0.32, C:0.07, G:0.06, T:0.55
Consensus pattern (25 bp):
TATATTATGTATATATTTTTAATAC
Found at i:23706538 original size:14 final size:14
Alignment explanation
Indices: 23706519--23706554 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
23706509 TGCCGAGGTA
*
23706519 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
23706533 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
23706547 TTTTCAAA
1 TTTTCAAA
23706555 AAAATCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.25, C:0.11, G:0.06, T:0.58
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:23706570 original size:91 final size:91
Alignment explanation
Indices: 23706452--23706704 Score: 390
Period size: 91 Copynumber: 2.8 Consensus size: 91
23706442 ATGTTTTAAT
*
23706452 TTCTGTTTTTC-AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAG
1 TTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAG
23706516 GTATTTTCAAATTT-TGTTTTTCAAA
66 GTATTTTCAAATTTCTGTTTTTCAAA
* * *
23706541 TTCTGTTTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGA
1 TTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGA
*
23706606 GGTATTTTC-AATTTCTGTTTTTCAAT
65 GGTATTTTCAAATTTCTGTTTTTCAAA
* * *
23706632 TTCTG--TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAG
1 TTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAG
23706695 GTATTTTCAA
66 GTATTTTCAA
23706705 TTCCTATTTT
Statistics
Matches: 149, Mismatches: 11, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
88 56 0.38
89 16 0.11
90 5 0.03
91 72 0.48
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (91 bp):
TTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAG
GTATTTTCAAATTTCTGTTTTTCAAA
Found at i:23706629 original size:14 final size:14
Alignment explanation
Indices: 23706610--23706639 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
23706600 TGTCGAGGTA
23706610 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
23706624 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
23706638 TT
1 TT
23706640 CAAAAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:23706752 original size:164 final size:164
Alignment explanation
Indices: 23706553--23707249 Score: 985
Period size: 164 Copynumber: 4.3 Consensus size: 164
23706543 CTGTTTTTCA
* * * * * * *
23706553 AAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAT
1 AAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAAT
23706618 TTCTGTTTTTCAATTTCTGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
66 TTCTGTTTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
23706682 GTCACACGCTGAGGTATTTTCAATTCCTATTTTCT
131 GTCACACGCTGAGGTATTTTCAATTCCTATTTT-T
23706717 AAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGTCACACGCCGAGG-----T--A-
1 AAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAAT
* *
23706774 ------TTTTCAATTTCTGTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTAG
66 TTCTGTTTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* *
23706833 GTCAGACGCTGAGGTATTTTCAATTCCTGTTTTT
131 GTCACACGCTGAGGTATTTTCAATTCCTATTTTT
* * * * * *
23706867 TAAAAGTCAACTCGTATTGTGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAT
1 AAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAAT
* *
23706932 TTCTATTTTTTAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
66 TTCTGTTTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
23706997 GTCACACGCTGAGGTATTTTCAATTCCTATTTTT
131 GTCACACGCTGAGGTATTTTCAATTCCTATTTTT
* * *
23707031 -AAAAGTCAACTCGTATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGGGGTATTTTCAAT
1 AAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAAT
* * *
23707095 TTCTGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCCTCAG
66 TTCTGTTTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* * *
23707160 GTCACACGCTGAGATATTTTTAATTCCTGTTTTT
131 GTCACACGCTGAGGTATTTTCAATTCCTATTTTT
* * * *
23707194 TAAAAGTCAACTCGTATTGCGAGAGGCGAGATGAGCCTCAGATCACACGCCGAGGT
1 AAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGTCACACGCCGAGGT
23707250 CATACGATGA
Statistics
Matches: 475, Mismatches: 42, Indels: 32
0.87 0.08 0.06
Matches are distributed among these distances:
150 67 0.14
151 70 0.15
155 1 0.00
157 2 0.00
159 1 0.00
163 147 0.31
164 187 0.39
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (164 bp):
AAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTCAAT
TTCTGTTTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
GTCACACGCTGAGGTATTTTCAATTCCTATTTTT
Found at i:23706836 original size:75 final size:75
Alignment explanation
Indices: 23706624--23706935 Score: 410
Period size: 75 Copynumber: 4.2 Consensus size: 75
23706614 CAATTTCTGT
23706624 TTTTCAATTTCTGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
1 TTTTCAATTTCTGTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
*
23706688 CGCTGAGGTA
66 CGCCGAGGTA
* * * * * *
23706698 TTTTCAATTCCTATTTTCTAAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGTCAC
1 TTTTCAATTTCT-GTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
23706763 ACGCCGAGGTA
65 ACGCCGAGGTA
* * * *
23706774 TTTTCAATTTCTGTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCAGA
1 TTTTCAATTTCTGTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
*
23706839 CGCTGAGGTA
66 CGCCGAGGTA
* * * * * * * *
23706849 TTTTCAATTCCTGTTTTTTAAAAGTCAACTCGTATTGTGAGAGGTGAGTTGAGCCTCGGGTTACA
1 TTTTCAATTTCTGTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
* *
23706914 TGTCGAGGTA
66 CGCCGAGGTA
23706924 TTTTCAATTTCT
1 TTTTCAATTTCT
23706936 ATTTTTTAAT
Statistics
Matches: 202, Mismatches: 34, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
74 11 0.05
75 128 0.63
76 63 0.31
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
CGCCGAGGTA
Found at i:23707011 original size:89 final size:89
Alignment explanation
Indices: 23706868--23707030 Score: 247
Period size: 89 Copynumber: 1.8 Consensus size: 89
23706858 CCTGTTTTTT
* * * * * *
23706868 AAAAGTCAACTCGTATTGTGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTCAATT
*
23706933 TCTATTTTTTAATTTCTGTTTCAA
66 CCTATTTTTTAATTTCTGTTTCAA
23706957 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACG-CTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTC-GAGGTATTTTCAAT
23707021 TCCTATTTTT
65 TCCTATTTTT
23707031 AAAAGTCAAC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
88 1 0.02
89 65 0.98
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTCAATT
CCTATTTTTTAATTTCTGTTTCAA
Found at i:23707087 original size:74 final size:74
Alignment explanation
Indices: 23706957--23707104 Score: 224
Period size: 74 Copynumber: 2.0 Consensus size: 74
23706947 TCTGTTTCAA
* * *
23706957 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
23707022 CCTATTTTT
66 CCTATTTTT
* * *
23707031 AAAAGTCAACTCGTATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGGGGTATTTTCAATT
1 AAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
* *
23707096 TCTGTTTTT
66 CCTATTTTT
23707105 CAATTTATGT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
74 66 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
CCTATTTTT
Found at i:23707106 original size:14 final size:14
Alignment explanation
Indices: 23707087--23707116 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23707077 CGCCGGGGTA
*
23707087 TTTTCAATTTCTGT
1 TTTTCAATTTATGT
23707101 TTTTCAATTTATGT
1 TTTTCAATTTATGT
23707115 TT
1 TT
23707117 CAAAAAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.10, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTCAATTTATGT
Found at i:23707126 original size:163 final size:164
Alignment explanation
Indices: 23706774--23707249 Score: 756
Period size: 163 Copynumber: 2.9 Consensus size: 164
23706764 CGCCGAGGTA
* * *
23706774 TTTTCAATTTCTGTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCAGA
1 TTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
* *
23706839 CGCTGAGGTATTTTCAATTCCTGTTTTTTAAAAGTCAACTCGTATTGTGAGAGGTGAGTTGAGCC
66 CGCTGAGGTATTTTCAATTCCTGTTTTTTAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
* * * *
23706904 TCGGGTTACATGTCGAGGTATTTTCAATTTCTAT
131 TCAGGTCACACGCCGAGGTATTTTCAATTTCTAT
*
23706938 TTTTTAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
1 TTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
* *
23707003 CGCTGAGGTATTTTCAATTCCT-ATTTTTAAAAGTCAACTCGTATTGCAAGAGGCGAGTTGAGCC
66 CGCTGAGGTATTTTCAATTCCTGTTTTTTAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
* *
23707067 TCAGGTCACACGCCGGGGTATTTTCAATTTCTGT
131 TCAGGTCACACGCCGAGGTATTTTCAATTTCTAT
* * *
23707101 TTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCCTCAGGTCACA
1 TTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
* * *
23707166 CGCTGAGATATTTTTAATTCCTGTTTTTTAAAAGTCAACTCGTATTGCGAGAGGCGAGATGAGCC
66 CGCTGAGGTATTTTCAATTCCTGTTTTTTAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
*
23707231 TCAGATCACACGCCGAGGT
131 TCAGGTCACACGCCGAGGT
23707250 CATACGATGA
Statistics
Matches: 286, Mismatches: 25, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
163 147 0.51
164 139 0.49
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (164 bp):
TTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
CGCTGAGGTATTTTCAATTCCTGTTTTTTAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCC
TCAGGTCACACGCCGAGGTATTTTCAATTTCTAT
Found at i:23707190 original size:89 final size:89
Alignment explanation
Indices: 23707031--23707193 Score: 245
Period size: 89 Copynumber: 1.8 Consensus size: 89
23707021 TCCTATTTTT
* * * * *
23707031 AAAAGTCAACTCGTATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGGGGTATTTTCAATT
1 AAAAATCAACTCATATTGCAAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGATATTTTCAATT
*
23707096 TCTGTTTTTCAATTTATGTTTCAA
66 CCTGTTTTTCAATTTATGTTTCAA
* * *
23707120 AAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCCTCAGGTCACACGCTGAGATATTTTTAATT
1 AAAAATCAACTCATATTGCAAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGATATTTTCAATT
23707185 CCTGTTTTT
66 CCTGTTTTT
23707194 TAAAAGTCAA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 65 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCAAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGATATTTTCAATT
CCTGTTTTTCAATTTATGTTTCAA
Found at i:23707842 original size:25 final size:25
Alignment explanation
Indices: 23707793--23708004 Score: 185
Period size: 23 Copynumber: 8.6 Consensus size: 25
23707783 TATTATTATC
*
23707793 ATTTCTAATA-TATATATATCGTATAT
1 ATTTTTAATACTATAT-TAT-GTATAT
*
23707819 GTTTTT-ATA-TATATTATGTATAT
1 ATTTTTAATACTATATTATGTATAT
23707842 ATTTTTAATA-T-TATTA-GTTATAT
1 ATTTTTAATACTATATTATG-TATAT
*
23707865 ATTTTTTATACTAT-TTCATGTATAT
1 ATTTTTAATACTATATT-ATGTATAT
* *
23707890 ATTTTT-ATATTATCTTATGTATAT
1 ATTTTTAATACTATATTATGTATAT
*
23707914 ATTATCTTAATAACTATATTATGTATGT
1 ATT-T-TTAAT-ACTATATTATGTATAT
* *
23707942 ATTTTTAACACTATATTATGTACAT
1 ATTTTTAATACTATATTATGTATAT
* *
23707967 ACTTTTAATA-T-TATTATGTATTT
1 ATTTTTAATACTATATTATGTATAT
*
23707990 ATCTTTAATA-TATAT
1 ATTTTTAATACTATAT
23708005 GTATATATTT
Statistics
Matches: 157, Mismatches: 17, Indels: 26
0.79 0.09 0.13
Matches are distributed among these distances:
22 1 0.01
23 49 0.31
24 31 0.20
25 46 0.29
26 11 0.07
27 3 0.02
28 16 0.10
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.56
Consensus pattern (25 bp):
ATTTTTAATACTATATTATGTATAT
Found at i:23707945 original size:52 final size:47
Alignment explanation
Indices: 23707814--23707948 Score: 143
Period size: 52 Copynumber: 2.8 Consensus size: 47
23707804 ATATATATCG
*
23707814 TATATGTTTTT-ATA-TATATTATGTATATATTTTTAATATTATTAGT
1 TATATATTTTTAATACTATATTATGTATATATTTTT-ATATTATTAGT
*
23707860 TATATATTTTTTATACTAT-TTCATGTATATATTTTTATATTATCTTA-T
1 TATATATTTTTAATACTATATT-ATGTATATATTTTTATATTA--TTAGT
*
23707908 GTATATATTATCTTAATAACTATATTATGTATGTATTTTTA
1 -TATATATT-T-TTAAT-ACTATATTATGTATATATTTTTA
23707949 ACACTATATT
Statistics
Matches: 76, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
46 10 0.13
47 11 0.14
48 18 0.24
49 11 0.14
50 1 0.01
51 4 0.05
52 19 0.25
53 2 0.03
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (47 bp):
TATATATTTTTAATACTATATTATGTATATATTTTTATATTATTAGT
Found at i:23708013 original size:25 final size:23
Alignment explanation
Indices: 23707970--23708016 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
23707960 TGTACATACT
*
23707970 TTTAATATTATTATGTATTTATC
1 TTTAATATTATTATATATTTATC
23707993 TTTAATATATATGTATATATTTAT
1 TTTAATAT-TAT-TATATATTTAT
23708017 GTAGTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.38
24 3 0.14
25 10 0.48
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (23 bp):
TTTAATATTATTATATATTTATC
Found at i:23708097 original size:50 final size:51
Alignment explanation
Indices: 23707953--23708097 Score: 127
Period size: 50 Copynumber: 2.8 Consensus size: 51
23707943 TTTTTAACAC
* * *
23707953 TATATTATGTACATACTTTTAATATTATTATGTATTTATCTTTAATATATATGTA
1 TATATTATGTAAATA-TTTTAATA-T-GTAT-TATTTATATTTAATATATATGTA
* * * *
23708008 TATATTTATGT-AGTATTATTAATA-GTCATTTTTTTTATTT-CTA-ATATGTA
1 TATA-TTATGTAAATATT-TTAATATGT-ATTATTTATATTTAATATATATGTA
23708058 TATATTATGTAAATATTTTAATACTGTATTATTTATATTT
1 TATATTATGTAAATATTTTAATA-TGTATTATTTATATTT
23708098 TTTTTCTTGC
Statistics
Matches: 74, Mismatches: 10, Indels: 17
0.73 0.10 0.17
Matches are distributed among these distances:
49 12 0.16
50 27 0.36
51 4 0.05
52 9 0.12
53 2 0.03
54 2 0.03
55 12 0.16
56 6 0.08
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (51 bp):
TATATTATGTAAATATTTTAATATGTATTATTTATATTTAATATATATGTA
Found at i:23709401 original size:22 final size:22
Alignment explanation
Indices: 23709359--23709401 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
23709349 AAATTATGTT
* *
23709359 ATTTTAAGGTTTATTGTTATGA
1 ATTTTAAGGTTTAATGCTATGA
23709381 ATTTT-AGGTTTAATGACTATG
1 ATTTTAAGGTTTAATG-CTATG
23709402 GTTAATTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (22 bp):
ATTTTAAGGTTTAATGCTATGA
Found at i:23710013 original size:20 final size:21
Alignment explanation
Indices: 23709988--23710034 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
23709978 ACGGTTTTGG
23709988 GGTTTAAAGTTT-GGGGATAT
1 GGTTTAAAGTTTAGGGGATAT
* **
23710008 GGTTTAGAGTTTAGGGTTTAT
1 GGTTTAAAGTTTAGGGGATAT
23710029 GGTTTA
1 GGTTTA
23710035 GGGTTGGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (21 bp):
GGTTTAAAGTTTAGGGGATAT
Found at i:23710021 original size:7 final size:7
Alignment explanation
Indices: 23710008--23710075 Score: 95
Period size: 7 Copynumber: 10.0 Consensus size: 7
23709998 TTGGGGATAT
23710008 GGTTTAG
1 GGTTTAG
*
23710015 AGTTTAG
1 GGTTTAG
*
23710022 GGTTTAT
1 GGTTTAG
23710029 GGTTTAG
1 GGTTTAG
23710036 GG-TT-G
1 GGTTTAG
23710041 GGTTTAG
1 GGTTTAG
23710048 GGTTTAG
1 GGTTTAG
*
23710055 GGTTTAA
1 GGTTTAG
23710062 GGTTTAG
1 GGTTTAG
23710069 GGTTTAG
1 GGTTTAG
23710076 AGTATAATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
5 3 0.06
6 4 0.08
7 46 0.87
ACGTcount: A:0.16, C:0.00, G:0.40, T:0.44
Consensus pattern (7 bp):
GGTTTAG
Found at i:23710047 original size:33 final size:33
Alignment explanation
Indices: 23710008--23710072 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
23709998 TTGGGGATAT
*
23710008 GGTTTAGAGTTTAGGGTTTATGGTTTAGGGTTG
1 GGTTTAGAGTTTAGGGTTTAAGGTTTAGGGTTG
*
23710041 GGTTTAGGGTTTAGGGTTTAAGGTTTAGGGTT
1 GGTTTAGAGTTTAGGGTTTAAGGTTTAGGGTT
23710073 TAGAGTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (33 bp):
GGTTTAGAGTTTAGGGTTTAAGGTTTAGGGTTG
Found at i:23713675 original size:26 final size:26
Alignment explanation
Indices: 23713639--23713748 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
23713629 CATGAAATTC
23713639 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
23713665 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
23713691 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
23713717 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
23713743 TTATCA
1 TTATCA
23713749 ATTTGTATTA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:23721201 original size:26 final size:26
Alignment explanation
Indices: 23721151--23721260 Score: 161
Period size: 27 Copynumber: 4.2 Consensus size: 26
23721141 CATGAAATTC
23721151 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
23721177 TATATCATGAAACA-TTACCTAACCCA
1 T-TATCATGAAACATTTACCTAACCCA
* *
23721203 TTATCATGGAACATTTACCCTAACCTA
1 TTATCATGAAACATTTA-CCTAACCCA
*
23721230 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
23721255 TTATCA
1 TTATCA
23721261 ATTTGTATTA
Statistics
Matches: 79, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
25 26 0.33
26 25 0.32
27 28 0.35
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:23721235 original size:52 final size:52
Alignment explanation
Indices: 23721151--23721260 Score: 161
Period size: 52 Copynumber: 2.1 Consensus size: 52
23721141 CATGAAATTC
23721151 TTATCATGAAACATTTACCTAACCCATATATCATGAAACA-TTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATATATCATG-AACATTTACCTAACCCA
* * *
23721203 TTATCATGGAACATTTACCCTAACCTAT-TATCATGAACATTTACCTAACCTA
1 TTATCATGAAACATTTA-CCTAACCCATATATCATGAACATTTACCTAACCCA
23721255 TTATCA
1 TTATCA
23721261 ATTTGTATTA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
51 4 0.08
52 40 0.75
53 9 0.17
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATATATCATGAACATTTACCTAACCCA
Found at i:23725094 original size:20 final size:21
Alignment explanation
Indices: 23725069--23725115 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
23725059 AACGGTTTGG
23725069 GGTTTAAAGTTT-GGGGATAT
1 GGTTTAAAGTTTAGGGGATAT
* **
23725089 GGTTTAGAGTTTAGGGTTTAT
1 GGTTTAAAGTTTAGGGGATAT
23725110 GGTTTA
1 GGTTTA
23725116 GGTTGGGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (21 bp):
GGTTTAAAGTTTAGGGGATAT
Found at i:23725102 original size:7 final size:7
Alignment explanation
Indices: 23725089--23725155 Score: 86
Period size: 7 Copynumber: 10.0 Consensus size: 7
23725079 TTGGGGATAT
23725089 GGTTTAG
1 GGTTTAG
*
23725096 AGTTTAG
1 GGTTTAG
*
23725103 GGTTTAT
1 GGTTTAG
23725110 GGTTTA-
1 GGTTTAG
23725116 GG-TT-G
1 GGTTTAG
23725121 GGTTTAG
1 GGTTTAG
23725128 GGTTTAG
1 GGTTTAG
*
23725135 GGTTTAA
1 GGTTTAG
23725142 GGTTTAG
1 GGTTTAG
23725149 GGTTTAG
1 GGTTTAG
23725156 AGTATAATTT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
5 4 0.08
6 4 0.08
7 44 0.85
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (7 bp):
GGTTTAG
Found at i:23725127 original size:32 final size:32
Alignment explanation
Indices: 23725089--23725149 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
23725079 TTGGGGATAT
*
23725089 GGTTTAGAGTTTAGGGTTTATGGTTTAGGTTG
1 GGTTTAGAGTTTAGGGTTTAAGGTTTAGGTTG
*
23725121 GGTTTAGGGTTTAGGGTTTAAGGTTTAGG
1 GGTTTAGAGTTTAGGGTTTAAGGTTTAGG
23725150 GTTTAGAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.44
Consensus pattern (32 bp):
GGTTTAGAGTTTAGGGTTTAAGGTTTAGGTTG
Found at i:23728726 original size:26 final size:26
Alignment explanation
Indices: 23728690--23728799 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
23728680 CATGAAATTC
23728690 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
23728716 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
23728742 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
23728768 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
23728794 TTATCA
1 TTATCA
23728800 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:23734520 original size:26 final size:26
Alignment explanation
Indices: 23734484--23734619 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
23734474 CATGAAATTC
23734484 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
23734510 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
23734536 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
23734562 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
23734588 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
23734614 TTATCA
1 TTATCA
23734620 ATTTGTATCA
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 108 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:23746460 original size:43 final size:43
Alignment explanation
Indices: 23746407--23746493 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
23746397 GTTAACTTGA
23746407 ATCAATATTTTGGCATATATGGAATTGGTATATCATTGAAATG
1 ATCAATATTTTGGCATATATGGAATTGGTATATCATTGAAATG
*
23746450 ATCAATATTTTGGTATATATGGAATTGGTATATCATTGAAATG
1 ATCAATATTTTGGCATATATGGAATTGGTATATCATTGAAATG
23746493 A
1 A
23746494 CTTAAATTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (43 bp):
ATCAATATTTTGGCATATATGGAATTGGTATATCATTGAAATG
Found at i:23748191 original size:22 final size:24
Alignment explanation
Indices: 23748166--23748215 Score: 70
Period size: 22 Copynumber: 2.2 Consensus size: 24
23748156 ATGAAAAGTG
23748166 TATACATAATA-ATACTA-A-AATA
1 TATACATAATATATA-TACATAATA
23748188 TATACATAATATATATACATAATA
1 TATACATAATATATATACATAATA
23748212 TATA
1 TATA
23748216 AAATGAACGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 13 0.52
23 4 0.16
24 8 0.32
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (24 bp):
TATACATAATATATATACATAATA
Found at i:23748198 original size:11 final size:11
Alignment explanation
Indices: 23748166--23748215 Score: 57
Period size: 11 Copynumber: 4.4 Consensus size: 11
23748156 ATGAAAAGTG
23748166 TATACATAATA
1 TATACATAATA
*
23748177 -ATACTAAAATA
1 TATAC-ATAATA
23748188 TATACATAATATA
1 TATACAT-A-ATA
23748201 TATACATAATA
1 TATACATAATA
23748212 TATA
1 TATA
23748216 AAATGAACGT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
10 4 0.12
11 13 0.39
12 6 0.18
13 10 0.30
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (11 bp):
TATACATAATA
Found at i:23748203 original size:13 final size:13
Alignment explanation
Indices: 23748166--23748215 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 13
23748156 ATGAAAAGTG
23748166 TATACAT-A-ATA
1 TATACATAATATA
*
23748177 -ATAC-TAAAATA
1 TATACATAATATA
23748188 TATACATAATATA
1 TATACATAATATA
23748201 TATACATAATATA
1 TATACATAATATA
23748214 TA
1 TA
23748216 AAATGAACGT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
9 1 0.03
10 5 0.15
11 3 0.09
12 4 0.12
13 21 0.62
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
TATACATAATATA
Found at i:23748327 original size:22 final size:22
Alignment explanation
Indices: 23748260--23748320 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
23748250 ATAACATAAA
* **
23748260 AATATATTAATAAATATGTACAT
1 AATATATTGA-AAATAAATACAT
23748283 -ATATATTGAAAATAAATACAT
1 AATATATTGAAAATAAATACAT
23748304 AATATCATT-AAAATAAA
1 AATAT-ATTGAAAATAAA
23748321 ATAATAAGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 10 0.30
22 20 0.61
23 3 0.09
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.34
Consensus pattern (22 bp):
AATATATTGAAAATAAATACAT
Found at i:23748377 original size:16 final size:15
Alignment explanation
Indices: 23748358--23748407 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
23748348 AAGTATAATA
23748358 ATAAATATAATGATAT
1 ATAAATATAAT-ATAT
*
23748374 ATAAAAATAATACTAT
1 ATAAATATAATA-TAT
* *
23748390 ATATATAAAATATAT
1 ATAAATATAATATAT
23748405 ATA
1 ATA
23748408 TACACGTTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 7 0.24
16 22 0.76
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (15 bp):
ATAAATATAATATAT
Found at i:23748381 original size:18 final size:17
Alignment explanation
Indices: 23748340--23748409 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 17
23748330 GGCAATAGTG
23748340 AAAATAATAAGTATA-ATA
1 AAAAT-ATAA-TATATATA
23748358 ATAAATATAATGATATATA
1 A-AAATATAAT-ATATATA
*
23748377 AAAATAATACTATATATA
1 AAAAT-ATAATATATATA
23748395 TAAAATAT-ATATATA
1 -AAAATATAATATATA
23748410 CACGTTGTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
17 7 0.16
18 21 0.47
19 17 0.38
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (17 bp):
AAAATATAATATATATA
Found at i:23748382 original size:22 final size:21
Alignment explanation
Indices: 23748343--23748409 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
23748333 AATAGTGAAA
*
23748343 ATAATA-AGTATAATAATAAAT
1 ATAATATA-TATAAAAATAAAT
23748364 ATAATGATATATAAAAAT-AAT
1 ATAAT-ATATATAAAAATAAAT
*
23748385 ACT-ATATATATAAAATATATAT
1 A-TAATATATATAAAA-ATAAAT
23748407 ATA
1 ATA
23748410 CACGTTGTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
20 10 0.26
21 14 0.37
22 13 0.34
23 1 0.03
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (21 bp):
ATAATATATATAAAAATAAAT
Found at i:23748925 original size:22 final size:23
Alignment explanation
Indices: 23748900--23748945 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
23748890 CAACCAAATC
23748900 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
23748922 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
23748945 A
1 A
23748946 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:23748951 original size:23 final size:23
Alignment explanation
Indices: 23748907--23748951 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
23748897 ATCAATTCAA
*
23748907 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
23748930 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
23748952 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:23752411 original size:33 final size:33
Alignment explanation
Indices: 23752343--23752411 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 33
23752333 TATTAAAAAG
* * *
23752343 ATATATATACGTAATATATATAATATAGTATTA
1 ATATATATACGTAATATACATAATATAGAAATA
* *
23752376 ATATATTTACGTAATATACA-CATATGAGAAATA
1 ATATATATACGTAATATACATAATAT-AGAAATA
23752409 ATA
1 ATA
23752412 ATAATATTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
32 4 0.13
33 26 0.87
ACGTcount: A:0.49, C:0.06, G:0.07, T:0.38
Consensus pattern (33 bp):
ATATATATACGTAATATACATAATATAGAAATA
Found at i:23752569 original size:27 final size:30
Alignment explanation
Indices: 23752506--23752570 Score: 91
Period size: 27 Copynumber: 2.3 Consensus size: 30
23752496 ATACGTACAT
*
23752506 AATATATATACATATAATATAGTTATTAAG
1 AATATACATACATATAATATAGTTATTAAG
*
23752536 AAAATACATACA-AT-ATATAG-TATTAAG
1 AATATACATACATATAATATAGTTATTAAG
23752563 AATATACA
1 AATATACA
23752571 CAATGCATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 14 0.44
28 6 0.19
29 2 0.06
30 10 0.31
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (30 bp):
AATATACATACATATAATATAGTTATTAAG
Found at i:23753017 original size:142 final size:142
Alignment explanation
Indices: 23752776--23753155 Score: 397
Period size: 141 Copynumber: 2.7 Consensus size: 142
23752766 CATAAACATA
* * * * * *
23752776 ATAAAAAAATATTAAAATAAAGCAATTAGAAAATAATACTATGTACACAA-ATATAGACATATAC
1 ATAATAAAATATTAAAATAAAGTAATTA-AAAATAATACCATGTATA-AATATATATACATATAT
* * * * *
23752840 ATATAAAAAAATATAC-ACTA-T-TAT-TAATAATAATAAATA-TAGTAATAAT-ATTATTAACA
64 ATAT-AAAACATACACTAATATTATATATAATAATAATAAATACTAGAAATAATGATGA--AACA
23752899 AAAAAAGCAAATACAAT
126 AAAAAAGCAAATACAAT
*
23752916 ATAATAAAAGTATTAAAATGAAGTAATTAAAAATAATACCATGTATAAATATATATACATATATA
1 ATAATAAAA-TATTAAAATAAAGTAATTAAAAATAATACCATGTATAAATATATATACATATATA
* *
23752981 -ATAAAACATACACTAATATTATATATAATAATAAT-AATACTAGAAATAATGATGAAATATAAA
65 TATAAAACATACACTAATATTATATATAATAATAATAAATACTAGAAATAATGATGAAACAAAAA
* *
23753044 AAGTAAATATAAT
130 AAGCAAATACAAT
* * * * * * *
23753057 ACAATAGTAATATTAAAATAAAGTAATT-AAGATAATA-C-TATATATATATACATACATACATA
1 ATAATA-AAATATTAAAATAAAGTAATTAAAAATAATACCATGTATAAATATATATACATATATA
*
23753119 TATAAAACATACACTAATATTATATACAATAATAATA
65 TATAAAACATACACTAATATTATATATAATAATAATA
23753156 CTAGAAATAA
Statistics
Matches: 204, Mismatches: 25, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
138 29 0.14
139 42 0.21
140 46 0.23
141 63 0.31
142 21 0.10
143 3 0.01
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.30
Consensus pattern (142 bp):
ATAATAAAATATTAAAATAAAGTAATTAAAAATAATACCATGTATAAATATATATACATATATAT
ATAAAACATACACTAATATTATATATAATAATAATAAATACTAGAAATAATGATGAAACAAAAAA
AGCAAATACAAT
Found at i:23753055 original size:136 final size:134
Alignment explanation
Indices: 23752913--23753166 Score: 345
Period size: 136 Copynumber: 1.9 Consensus size: 134
23752903 AAGCAAATAC
* * *
23752913 AATATAATA-AA-AG-TATTAAAATGAAGTAATTAAAAATAATACCATGTATAAATATATATACA
1 AATATAATACAATAGATATTAAAATAAAGTAATT-AAAATAATA-C-TATATAAATATACATACA
* *
23752975 TATATA-ATAAAACATACACTAATATTATATATAATAATAATAATACTAGAAATAATGATGAAAT
63 TACATATATAAAACATACACTAATA-T-TATAT-ACAATAATAATACTAGAAATAATGATGAAAT
23753039 ATAAAAAGTA
125 ATAAAAAGTA
* *
23753049 AATATAATACAATAGTAATATTAAAATAAAGTAATTAAGATAATACTATATATATATACATACAT
1 AATATAATACAATAG--ATATTAAAATAAAGTAATTAAAATAATACTATATAAATATACATACAT
23753114 ACATATATAAAACATACACTAATATTATATACAATAATAATACTAGAAATAAT
64 ACATATATAAAACATACACTAATATTATATACAATAATAATACTAGAAATAAT
23753167 AATAATAACT
Statistics
Matches: 105, Mismatches: 7, Indels: 12
0.85 0.06 0.10
Matches are distributed among these distances:
136 31 0.30
137 7 0.07
138 23 0.22
139 19 0.18
140 8 0.08
141 17 0.16
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (134 bp):
AATATAATACAATAGATATTAAAATAAAGTAATTAAAATAATACTATATAAATATACATACATAC
ATATATAAAACATACACTAATATTATATACAATAATAATACTAGAAATAATGATGAAATATAAAA
AGTA
Found at i:23753154 original size:3 final size:3
Alignment explanation
Indices: 23753146--23753245 Score: 62
Period size: 3 Copynumber: 32.7 Consensus size: 3
23753136 TATTATATAC
* *
23753146 AAT AAT AAT ACT AGA- AAT AAT AAT AAT AACT AGT AAT AAT AAT ACATT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AA-T AAT AAT AAT AAT A-A-T
* ** * * *
23753194 AAA AAT AAT AAT -AT GTT AAT AACC AA- AAT ATT AAT AAT AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
23753238 AAT AAT AA
1 AAT AAT AA
23753246 GAGAACTAAT
Statistics
Matches: 75, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
2 5 0.07
3 62 0.83
4 6 0.08
5 2 0.03
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:23753168 original size:139 final size:141
Alignment explanation
Indices: 23752900--23753169 Score: 352
Period size: 139 Copynumber: 1.9 Consensus size: 141
23752890 TTATTAACAA
* * *
23752900 AAAAAGCAAATACAATATAATAAAAGTATTAAAATGAAGTAATTAAAAATAATACCATGTATAAA
1 AAAAAGCAAATACAATACAATAAAAGTATTAAAATAAAGTAATTAAAAATAATACCATATATAAA
* * * * *
23752965 TATATATACATATATAATAAAACATACACTAATATTATATATAATAATAATAATACTAGAAATAA
66 TATACATACATACATAATAAAACATACACTAATATTATATACAATAATAATAATACGAAAAATAA
23753030 TGATGAAATAT
131 TGATGAAATAT
* * * * *
23753041 AAAAAGTAAATATAATACAATAGTAA-TATTAAAATAAAGTAATT-AAGATAATA-C-TATATAT
1 AAAAAGCAAATACAATACAATA-AAAGTATTAAAATAAAGTAATTAAAAATAATACCATATATAA
*
23753102 ATATACATACATACATATATAAAACATACACTAATATTATATACAATAATAATACTA-GAAATAA
65 ATATACATACATACATA-ATAAAACATACACTAATATTATATACAATAATAATAATACGAAA-AA
23753166 TAAT
128 TAAT
23753170 AATAACTAGT
Statistics
Matches: 112, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
138 22 0.20
139 44 0.39
140 8 0.07
141 36 0.32
142 2 0.02
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.30
Consensus pattern (141 bp):
AAAAAGCAAATACAATACAATAAAAGTATTAAAATAAAGTAATTAAAAATAATACCATATATAAA
TATACATACATACATAATAAAACATACACTAATATTATATACAATAATAATAATACGAAAAATAA
TGATGAAATAT
Found at i:23753183 original size:19 final size:18
Alignment explanation
Indices: 23753146--23753206 Score: 72
Period size: 19 Copynumber: 3.4 Consensus size: 18
23753136 TATTATATAC
23753146 AATAATAATACTAGAAAT
1 AATAATAATACTAGAAAT
*
23753164 AATAATAATAACTAGTAAT
1 AATAATAAT-ACTAGAAAT
*
23753183 AATAATACAT--TAAAAAT
1 AATAATA-ATACTAGAAAT
23753200 AATAATA
1 AATAATA
23753207 TGTTAATAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
17 12 0.32
18 9 0.24
19 15 0.39
20 2 0.05
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (18 bp):
AATAATAATACTAGAAAT
Found at i:23754653 original size:24 final size:24
Alignment explanation
Indices: 23754563--23754645 Score: 64
Period size: 24 Copynumber: 3.3 Consensus size: 24
23754553 CGTATAATGA
*
23754563 AATATATAC-TAATATTA-ATAAT
1 AATATATACATAATATGATATAAT
* *
23754585 AAATATAATAGAGGTAACATAGATATAAT
1 -AATAT-ATACA--TAATAT-GATATAAT
23754614 AATATATACATAATATGATATTAA-
1 AATATATACATAATATGATA-TAAT
23754638 AATATATA
1 AATATATA
23754646 TATGATATAG
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
23 5 0.10
24 15 0.31
25 8 0.17
27 9 0.19
28 6 0.12
29 5 0.10
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (24 bp):
AATATATACATAATATGATATAAT
Found at i:23755051 original size:23 final size:23
Alignment explanation
Indices: 23755025--23755094 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
23755015 ATTATTAATA
23755025 ATACTACAGAAATATATACACAT
1 ATACTACAGAAATATATACACAT
*
23755048 ATAC-ATTAG--ATATATACACAT
1 ATACTA-CAGAAATATATACACAT
* *
23755069 ATA-TACATTAAATATATATACAT
1 ATACTACA-GAAATATATACACAT
23755092 ATA
1 ATA
23755095 TAATAACATT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
20 1 0.03
21 16 0.42
22 1 0.03
23 20 0.53
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.33
Consensus pattern (23 bp):
ATACTACAGAAATATATACACAT
Found at i:23755095 original size:23 final size:23
Alignment explanation
Indices: 23755036--23755096 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
23755026 TACTACAGAA
* *
23755036 ATATATACACATATACATTAGAT
1 ATATATACATATATACATTAAAT
*
23755059 ATATACACATATATACATTAAAT
1 ATATATACATATATACATTAAAT
23755082 ATATATACATATATA
1 ATATATACATATATA
23755097 ATAACATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (23 bp):
ATATATACATATATACATTAAAT
Found at i:23757481 original size:23 final size:24
Alignment explanation
Indices: 23757447--23757497 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
23757437 AAATTTAGTT
*
23757447 TTTTTTTATTTTTA-TTTTCAAAA
1 TTTTATTATTTTTACTTTTCAAAA
*
23757470 TTTTATT-TTTTTACTTTTTAAAA
1 TTTTATTATTTTTACTTTTCAAAA
23757493 TTTTA
1 TTTTA
23757498 AAAATAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (24 bp):
TTTTATTATTTTTACTTTTCAAAA
Found at i:23758837 original size:24 final size:23
Alignment explanation
Indices: 23758800--23758853 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
23758790 AATACTATTT
23758800 TATTTTAACTCAAAATTTTTAATC
1 TATTTTAACTC-AAATTTTTAATC
* *
23758824 TATTTTGAAC-CAAATTTTTATTT
1 TATTTT-AACTCAAATTTTTAATC
23758847 TATTTTA
1 TATTTTA
23758854 TTCAAACTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 1 0.04
23 16 0.59
24 7 0.26
25 3 0.11
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (23 bp):
TATTTTAACTCAAATTTTTAATC
Found at i:23759974 original size:31 final size:32
Alignment explanation
Indices: 23759902--23759975 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 32
23759892 GATTTGGTGC
* *
23759902 AATTATACATGTGAAACTTGAATTATGAATTA
1 AATTATATATATGAAACTTGAATTATGAATTA
* * *
23759934 TA-TGTATATATGAAACTTGAATTTTG-ATTA
1 AATTATATATATGAAACTTGAATTATGAATTA
23759964 AATTATATATAT
1 AATTATATATAT
23759976 TTAAAAAATG
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
30 5 0.15
31 28 0.82
32 1 0.03
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.43
Consensus pattern (32 bp):
AATTATATATATGAAACTTGAATTATGAATTA
Found at i:23766591 original size:35 final size:35
Alignment explanation
Indices: 23766545--23766614 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
23766535 TCTTGCCAAC
23766545 TTTAATCAATAATCCCTTGATTTTTACTATAAATG
1 TTTAATCAATAATCCCTTGATTTTTACTATAAATG
*
23766580 TTTAATCAATAATCCCTTGGTTTTTACTATAAATG
1 TTTAATCAATAATCCCTTGATTTTTACTATAAATG
23766615 ATGTTTTGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (35 bp):
TTTAATCAATAATCCCTTGATTTTTACTATAAATG
Found at i:23767252 original size:28 final size:27
Alignment explanation
Indices: 23767206--23767273 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
23767196 ACCCTAAATC
* * *
23767206 CTAAACTATAAAATTAGAATCTCAAACA
1 CTAAACT-CAAAATTAGAAGCCCAAACA
*
23767234 CTAAACTCAAAATTAAGAAGCCCAAACG
1 CTAAACTCAAAATT-AGAAGCCCAAACA
*
23767262 CTAAAATCAAAA
1 CTAAACTCAAAA
23767274 GCCAAAAATC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 6 0.18
28 28 0.82
ACGTcount: A:0.54, C:0.21, G:0.06, T:0.19
Consensus pattern (27 bp):
CTAAACTCAAAATTAGAAGCCCAAACA
Found at i:23771133 original size:7 final size:7
Alignment explanation
Indices: 23771121--23771157 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
23771111 AGTTTTTTTA
23771121 TTGAATT
1 TTGAATT
23771128 TTGAATT
1 TTGAATT
23771135 TTGAATT
1 TTGAATT
23771142 TTGAATT
1 TTGAATT
23771149 TTGAATT
1 TTGAATT
23771156 TT
1 TT
23771158 TTTAGTTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (7 bp):
TTGAATT
Found at i:23771166 original size:16 final size:16
Alignment explanation
Indices: 23771147--23771177 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23771137 GAATTTTGAA
*
23771147 TTTTGAATTTTTTTAG
1 TTTTGAATATTTTTAG
23771163 TTTTGAATATTTTTA
1 TTTTGAATATTTTTA
23771178 TAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.68
Consensus pattern (16 bp):
TTTTGAATATTTTTAG
Found at i:23771176 original size:18 final size:19
Alignment explanation
Indices: 23771147--23771190 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
23771137 GAATTTTGAA
23771147 TTTTGAAT-TTTTT-T-AG
1 TTTTGAATATTTTTATAAG
*
23771163 TTTTGAATATTTTTATAAT
1 TTTTGAATATTTTTATAAG
23771182 TTTTGAATA
1 TTTTGAATA
23771191 ATTTGTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 5 0.21
18 1 0.04
19 10 0.42
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (19 bp):
TTTTGAATATTTTTATAAG
Found at i:23772073 original size:16 final size:16
Alignment explanation
Indices: 23772040--23772073 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23772030 ACCCTCTGTT
* *
23772040 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
23772056 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
23772072 AA
1 AA
23772074 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:23774900 original size:21 final size:21
Alignment explanation
Indices: 23774874--23774914 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
23774864 AGACGAGCAA
* *
23774874 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
23774895 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
23774915 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:23776850 original size:16 final size:16
Alignment explanation
Indices: 23776817--23776850 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23776807 GGAGATTGTT
* *
23776817 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
23776833 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
23776849 AA
1 AA
23776851 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:23789881 original size:24 final size:24
Alignment explanation
Indices: 23789854--23789901 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
23789844 AATTATCTCA
* *
23789854 TACTAAATATATAAA-ATGAAAGTT
1 TACTAAAAACATAAATAT-AAAGTT
23789878 TACTAAAAACATAAATATAAAGTT
1 TACTAAAAACATAAATATAAAGTT
23789902 GTGTTGGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (24 bp):
TACTAAAAACATAAATATAAAGTT
Found at i:23790523 original size:19 final size:20
Alignment explanation
Indices: 23790482--23790526 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
23790472 AAAACTATGA
*
23790482 TAAATTAAAGAAATAAATAT
1 TAAATTAAACAAATAAATAT
* *
23790502 TAAATT-AACAAATGAATTT
1 TAAATTAAACAAATAAATAT
23790521 TAAATT
1 TAAATT
23790527 TTTTATAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (20 bp):
TAAATTAAACAAATAAATAT
Found at i:23793386 original size:5 final size:5
Alignment explanation
Indices: 23793376--23793420 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
23793366 AATCGAGTCC
* **
23793376 TTTTA TTTTA TCTCC TTTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTT-TA TTTTA TTTTA TTTTA TTTTA TTTT
23793421 TACATTTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
5 30 0.91
6 3 0.09
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:23795024 original size:131 final size:132
Alignment explanation
Indices: 23794777--23795027 Score: 396
Period size: 131 Copynumber: 1.9 Consensus size: 132
23794767 GTATTCATCC
* * * *
23794777 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCACGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACAAGATTCGATATTTAGCAATTCACGGAATCATGCCCTAACGTG
* *
23794842 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCGAAATTTCACTCGCGTCTT
66 TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCGCGTCTT
23794907 TT
131 TT
*
23794909 AAAA-TTCTTCAAAACGAAGACAAGATTCGATATTTAGCAATTCGCGGAATCATGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACAAGATTCGATATTTAGCAATTCACGGAATCATGCCCTAACGTG
* * * *
23794973 TTAGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCA
66 TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCA
23795028 TTCATATCTT
Statistics
Matches: 108, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
131 104 0.96
132 4 0.04
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACAAGATTCGATATTTAGCAATTCACGGAATCATGCCCTAACGTG
TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCGCGTCTT
TT
Found at i:23795043 original size:131 final size:132
Alignment explanation
Indices: 23794777--23795059 Score: 388
Period size: 131 Copynumber: 2.2 Consensus size: 132
23794767 GTATTCATCC
* * * * *
23794777 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCACGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACAAGATTCGATATTTAGCAATTCACGGAATCATGCCCTAACGTG
* * * *
23794842 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCGAAATTTCACTCGCGTCTT
66 TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTT
23794907 -T
131 CT
* *
23794908 TAAAATTCTTCAAAACGAAGACAAGATTCGATATTTAGCAATTCGCGGAATCATGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACAAGATTCGATATTTAGCAATTCACGGAATCATGCCCTAACGTG
* * * * * *
23794973 TTAGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCATTCATATCTT
66 TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTT
23795038 CT
131 CT
* *
23795040 AAAAATTATTTAAAACGAAG
1 AAAAATTCTTCAAAACGAAG
23795060 GCAATATTTG
Statistics
Matches: 131, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
131 113 0.86
132 18 0.14
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACAAGATTCGATATTTAGCAATTCACGGAATCATGCCCTAACGTG
TTAGGTTGCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTT
CT
Found at i:23795091 original size:131 final size:131
Alignment explanation
Indices: 23794785--23795132 Score: 335
Period size: 131 Copynumber: 2.7 Consensus size: 131
23794775 CCAAAAGTTC
* ** * ** *
23794785 TTCAAAACGAAGACGAGATTCGATGTTTGGCAATTC-ACGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACGAAGACAAGATTCGACATTTAGCAATTCGA-AAAATCATGCCCTAACGTGTTGGGTT
* * * * *
23794849 GCAATTTCGCGTTTGCTCAAAATAATAGAATATCACTTCGAAATTTCACTCGCGTCTTTTAAAAT
65 GCAATTTCGTGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTTTAAAAAT
*
23794914 TC
130 TA
* *** *
23794916 TTCAAAACGAAGACAAGATTCGATATTTAGCAATTCGCGGAATCATGCCCTAACGTGTTAGGTTG
1 TTCAAAACGAAGACAAGATTCGACATTTAGCAATTCGAAAAATCATGCCCTAACGTGTTGGGTTG
* * * * *
23794981 CAATTTCGTGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTCATTCATATCTTCTAAAAAT
66 CAATTTCGTGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTT-TAAAAAT
23795046 TA
130 TA
* * * * * * * *
23795048 TTTAAAACGAAGGCAATATTTGGCGTTT-GACAATTC-AAAAATCATGCCCTATCGTGCTGGGTT
1 TTCAAAACGAAGACAAGATTCGACATTTAG-CAATTCGAAAAATCATGCCCTAACGTGTTGGGTT
**
23795111 GTGATTTC-TCGTTTGCTCAAAA
65 GCAATTTCGT-GTTTGCTCAAAA
23795133 CGATCGAACA
Statistics
Matches: 181, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
130 1 0.01
131 146 0.81
132 34 0.19
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (131 bp):
TTCAAAACGAAGACAAGATTCGACATTTAGCAATTCGAAAAATCATGCCCTAACGTGTTGGGTTG
CAATTTCGTGTTTGCTCAAAATAATAGAATATCACTTCAAAATTTCACTCACATCTTTAAAAATT
A
Found at i:23795275 original size:133 final size:130
Alignment explanation
Indices: 23795087--23795402 Score: 316
Period size: 130 Copynumber: 2.4 Consensus size: 130
23795077 ACAATTCAAA
* * * * * *
23795087 AATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACGATCGAACATTCCTT-TA
1 AATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGAACA-TCCTTACA
* * * *
23795151 TATTTTCA-T-TCATGTTTATAAAAAATTTACTT-AACAACGAAGACGATGTTCAATGTTTGGTG
65 GAATTTCACTCGCAT-TTTAT--AAAA--TACTTCAA-AACGAAGACGATGTTCAATGTTTGGCG
23795213 ATTTGAG
124 ATTTGAG
* * * * * *
23795220 AATCGTGCCCTATCATGCTGGGTTGCGCTTTTTCATTGGTTCGAAACAATTGAACATCCTTACAG
1 AATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGAACATCCTTACAG
* * * *
23795285 AATTTCACTCGCATTTTCTAAAATCCTTCAAAATGAAGGCGATGTTCAATGTTTGGCGATTTGAG
66 AATTTCACTCGCATTTTATAAAATACTTCAAAACGAAGACGATGTTCAATGTTTGGCGATTTGAG
* * * * *
23795350 AATCAAGCCCCATCGTGCTGGGTTGTGCTTTTTCATTTGCCCAAAATAATCGA
1 AATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGA
23795403 TTATCTCCTC
Statistics
Matches: 148, Mismatches: 31, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
130 77 0.52
131 2 0.01
132 9 0.06
133 52 0.35
134 5 0.03
135 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (130 bp):
AATCATGCCCTATCGTGCTGGGTTGTGCTTTTTCATTGGCTCAAAACAATCGAACATCCTTACAG
AATTTCACTCGCATTTTATAAAATACTTCAAAACGAAGACGATGTTCAATGTTTGGCGATTTGAG
Found at i:23807085 original size:45 final size:44
Alignment explanation
Indices: 23806894--23807099 Score: 132
Period size: 45 Copynumber: 4.6 Consensus size: 44
23806884 CTACAGATCC
* *
23806894 TGCTTCCCTGAAGTTGCAGTAGAGCAGATCAAAGACGACGAATCT
1 TGCTT-CCTGAAGTTGCAGTGGAGCAGATCAAAGACGATGAATCT
* * ** * *
23806939 TGACTTCCTGAAGTTGCAGTGAAGCAAATTTAAGTC-ACT-AACCT
1 TG-CTTCCTGAAGTTGCAGTGGAGCAGATCAAAGACGA-TGAATCT
* * * * * * ** ** *
23806983 AGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAA-A-TTTTAGATCT
1 TGCTTCCTGAAGTTGCAGTGGAGCAGATCAAAGACGATGA-ATCT
* *
23807026 CGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGATGAATCT
1 TGCTT-CCTGAAGTTGCAGTGGAGCAGATCAAAGACGATGAATCT
*
23807071 TGACTTCCTGAAGTTGCAGTGAAGCAGAT
1 TG-CTTCCTGAAGTTGCAGTGGAGCAGAT
23807100 TTAAGTCACT
Statistics
Matches: 117, Mismatches: 35, Indels: 18
0.69 0.21 0.11
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 27 0.23
44 27 0.23
45 54 0.46
46 7 0.06
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (44 bp):
TGCTTCCTGAAGTTGCAGTGGAGCAGATCAAAGACGATGAATCT
Found at i:23807365 original size:263 final size:264
Alignment explanation
Indices: 23806897--23807674 Score: 1073
Period size: 263 Copynumber: 2.9 Consensus size: 264
23806887 CAGATCCTGC
* * *
23806897 TTCCCTGAAGTTGCAGTAGAGCAGATCAAAGACGACGAATCTTGACTTCCTGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATTTTAACTTCCTGAAGTTGCAGTGAA
* *
23806962 GCAAATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATTTTAGATCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATCTC
* *
23807027 GTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGATGAATCTTGACTTCCTGAAGTTGCAGTG
131 GTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGACTTCCTGAAGTTGCAGTG
*
23807092 AAGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTAGAGTAGGCT-A-AAATATAGAT
196 AAGCAGATTTAAG-CACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGAT
*
23807155 CTCGT
260 ATCGT
* * * *
23807160 TTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGACGAATTTTAACTCCCGGAAGTTACAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATTTTAACTTCCTGAAGTTGCAGTGAA
* *
23807225 GCAGATTTAAGTCACTAACCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGTCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATCTC
** *
23807290 GTTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACGGCGAATCTAGACTTCCTGAAGTTGCAGTG
131 GTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGACTTCCTGAAGTTGCAGTG
* * * *
23807355 AGGTAGATTTAAGCCACTAACCTAGCTCTCTAAAGTTGTAGTGGAGTAAGCTGAGAAATATAGAT
196 AAGCAGATTTAAG-CACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGAT
23807420 ATCGT
260 ATCGT
* * * *
23807425 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACG-ACTCTAGGCTTCCTGAAGTTGCAATGA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATTTTA-ACTTCCTGAAGTTGCAGTGA
* * * * * * *
23807489 GGCAGATTTAAGCCACTAACCTAGCTCCCTAAAGTTGTAGTGGTGTAGACTGAGAAATATAGATT
65 AGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA-AATTTTAGATC
* ** * * * *
23807554 TTGTTTCTTTG-AGATTGCAGTGGAACAGATCAAAGACGGTGAATCTAGGCTTCCTGATGTTACA
129 TCGTTTCCCTGAAG-TTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGACTTCCTGAAGTTGCA
*
23807618 GTGAAGCAGATTT-AG-ACTATCGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
193 GTGAAGCAGATTTAAGCACTA---ACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
23807675 CGATTGTAGA
Statistics
Matches: 452, Mismatches: 55, Indels: 13
0.87 0.11 0.03
Matches are distributed among these distances:
263 229 0.51
264 5 0.01
265 117 0.26
266 101 0.22
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (264 bp):
TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATTTTAACTTCCTGAAGTTGCAGTGAA
GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATCTC
GTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGACTTCCTGAAGTTGCAGTG
AAGCAGATTTAAGCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAGAAATATAGATA
TCGT
Found at i:23807482 original size:133 final size:132
Alignment explanation
Indices: 23806897--23807674 Score: 1046
Period size: 132 Copynumber: 5.9 Consensus size: 132
23806887 CAGATCCTGC
* *
23806897 TTCCCTGAAGTTGCAGTAGAGCAGATCAAAGACGACGAATCTTGACTTCCTGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* * * *
23806962 GCAAATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATTTTAGATCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAAATATAGATCTC
23807027 GT
131 GT
* *
23807029 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGATGAATCTTGACTTCCTGAAGTTGCAGTGAA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
*
23807094 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTAGAGTAGGCT-AAAATATAGATCTC
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAAATATAGATCTC
23807158 GT
131 GT
* * * * *
23807160 TTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGACGAATTTTA-ACTCCCGGAAGTTACAGTGA
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAA-TCTAGACTTCCTGAAGTTGCAGTGA
* * * *
23807224 AGCAGATTTAAGTCACTAACCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGTCT
65 AGCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAAATATAGATCT
23807289 CGT
130 CGT
** * *
23807292 TTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACGGCGAATCTAGACTTCCTGAAGTTGCAGTGAG
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* * * * *
23807357 GTAGATTTAAGCCACTAACCTAGCTCTCTAAAGTTGTAGTGGAGTAAGCTGAGAAATATAGATAT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA-AAATATAGATCT
23807422 CGT
130 CGT
* * * *
23807425 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGACTCTAGGCTTCCTGAAGTTGCAATGAG
1 TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
* * * *
23807490 GCAGATTTAAGCCACTAACCTAGCTCCCTAAAGTTGTAGTGGTGTAGACTGAGAAATATAGATTT
66 GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA-AAATATAGATCT
*
23807555 TGT
130 CGT
** * ** * * *
23807558 TTCTTTG-AGATTGCAGTGGAACAGATCAAAGACGGTGAATCTAGGCTTCCTGATGTTACAGTGA
1 TTCCCTGAAG-TTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGA
*
23807622 AGCAGATTT-AG--ACTATCGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
65 AGCAGATTTAAGTCACTA---ACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
23807675 CGATTGTAGA
Statistics
Matches: 577, Mismatches: 61, Indels: 15
0.88 0.09 0.02
Matches are distributed among these distances:
130 4 0.01
131 120 0.21
132 230 0.40
133 223 0.39
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (132 bp):
TTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGACGAATCTAGACTTCCTGAAGTTGCAGTGAA
GCAGATTTAAGTCACTAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAAATATAGATCTC
GT
Found at i:23808639 original size:21 final size:20
Alignment explanation
Indices: 23808603--23808651 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
23808593 ATCAGCTCAC
*
23808603 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGATTTAGCTCGT
*
23808623 TTGAGCTCGAATTTAGCTTGT
1 TTGAGCTCG-ATTTAGCTCGT
*
23808644 TTCAGCTC
1 TTGAGCTC
23808652 ATTCCTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.14, C:0.20, G:0.22, T:0.43
Consensus pattern (20 bp):
TTGAGCTCGATTTAGCTCGT
Found at i:23810896 original size:5 final size:5
Alignment explanation
Indices: 23810886--23810930 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
23810876 AATCGAGTCC
* **
23810886 TTTTA TTTTA TCTCC TTTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTT-TA TTTTA TTTTA TTTTA TTTTA TTTT
23810931 TACATTTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
5 30 0.91
6 3 0.09
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:23812783 original size:133 final size:130
Alignment explanation
Indices: 23812592--23812908 Score: 321
Period size: 130 Copynumber: 2.4 Consensus size: 130
23812582 TTGACAATTC
* * * * * * * *
23812592 GAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACGATCGAACATTCATT
1 GAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATCGAACATCCATA
* * * * **
23812657 TATATTTTCATTCATGTTTATAAAAAATTTACTT-AACAACGAAGACGATGTTCAATGTTTGGCG
66 CAGAATTTCACTCACATTT-TAAAAAA--TACTTCAA-AACGAAGACGATGTTCAATGTTTGGCG
23812721 ATTT
127 ATTT
* * * * *
23812725 GAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGTTCGAAACAATTGAACATCCCTA
1 GAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATCGAACATCCATA
** * * * *
23812790 CAGAATTTCACTCACATTTTTTAAAATCCTTCAAAATGAAGGCGATGTTCGATGTTTGGCGATTT
66 CAGAATTTCACTCACATTTTAAAAAATACTTCAAAACGAAGACGATGTTCAATGTTTGGCGATTT
* * * * *
23812855 GAGAATCAAGCCCTATCGTGCTGAGTTGCGCTTTTTCATTTGCCCAAAATAATC
1 GAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATC
23812909 AAATATCTCC
Statistics
Matches: 149, Mismatches: 34, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
130 77 0.52
131 2 0.01
132 5 0.03
133 65 0.44
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (130 bp):
GAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTGGCTCAAAACAATCGAACATCCATA
CAGAATTTCACTCACATTTTAAAAAATACTTCAAAACGAAGACGATGTTCAATGTTTGGCGATTT
Found at i:23813822 original size:8 final size:8
Alignment explanation
Indices: 23813809--23813855 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
23813799 TGGAACCAAG
23813809 CTCATAAC
1 CTCATAAC
23813817 CTCATAAC
1 CTCATAAC
23813825 CTCATAAC
1 CTCATAAC
* * *
23813833 ATGA-GAC
1 CTCATAAC
23813840 CTCATAAC
1 CTCATAAC
23813848 CTCATAAC
1 CTCATAAC
23813856 TGCTCACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
7 4 0.12
8 28 0.88
ACGTcount: A:0.38, C:0.34, G:0.04, T:0.23
Consensus pattern (8 bp):
CTCATAAC
Found at i:23819008 original size:22 final size:19
Alignment explanation
Indices: 23818982--23819031 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 19
23818972 CGCTATATGT
23818982 TGTACATATACTGATATACTTA
1 TGTACATATACTG-TATA--TA
*
23819004 TGTACATAT-GTGTATATA
1 TGTACATATACTGTATATA
23819022 TGTACATATA
1 TGTACATATA
23819032 ATAGTAAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 11 0.42
20 4 0.15
21 2 0.08
22 9 0.35
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (19 bp):
TGTACATATACTGTATATA
Found at i:23820943 original size:3 final size:3
Alignment explanation
Indices: 23820920--23820975 Score: 78
Period size: 3 Copynumber: 18.7 Consensus size: 3
23820910 ATTTTGTGGA
*
23820920 AAG AAG TAAA AAG AA- AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG -AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
23820965 AAG GAG AAG AA
1 AAG AAG AAG AA
23820976 AGGGGTTAGG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
2 2 0.04
3 43 0.91
4 2 0.04
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (3 bp):
AAG
Done.