Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102776486
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2328156 characters in sequence are not A, C, G, or T
File 75 of 325
Found at i:26259309 original size:17 final size:18
Alignment explanation
Indices: 26259275--26259321 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
26259265 ATAGTCTAAT
* *
26259275 AATAAAATAAAGAAATGA
1 AATAAAAGAAATAAATGA
26259293 AAT-AAAGAAATAAATGA
1 AATAAAAGAAATAAATGA
26259310 AATAAAAGAAAT
1 AATAAAAGAAAT
26259322 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (18 bp):
AATAAAAGAAATAAATGA
Found at i:26259313 original size:9 final size:9
Alignment explanation
Indices: 26259287--26259321 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
26259277 TAAAATAAAG
26259287 AAATGAAAT
1 AAATGAAAT
26259296 AAA-GAAAT
1 AAATGAAAT
26259304 AAATGAAAT
1 AAATGAAAT
*
26259313 AAAAGAAAT
1 AAATGAAAT
26259322 GAAAAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (9 bp):
AAATGAAAT
Found at i:26262111 original size:12 final size:12
Alignment explanation
Indices: 26262096--26262133 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26262086 TTTTCCTTTT
26262096 CTTTTTCTTTCC
1 CTTTTTCTTTCC
26262108 CTTTTTCTTT-C
1 CTTTTTCTTTCC
*
26262119 TTTCTTTCTTTCC
1 CTT-TTTCTTTCC
26262132 CT
1 CT
26262134 GCTCTGTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 3 0.14
12 17 0.77
13 2 0.09
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (12 bp):
CTTTTTCTTTCC
Found at i:26266598 original size:19 final size:20
Alignment explanation
Indices: 26266574--26266616 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
26266564 GGTGATTGTG
*
26266574 TATACATGTGTACA-AATAA
1 TATACATATGTACATAATAA
*
26266593 TATACATATGTATATAATAA
1 TATACATATGTACATAATAA
26266613 TATA
1 TATA
26266617 TGAATAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.37
Consensus pattern (20 bp):
TATACATATGTACATAATAA
Found at i:26266742 original size:11 final size:11
Alignment explanation
Indices: 26266726--26266750 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26266716 ACAGAGGGAA
26266726 AAAGAAAGGAG
1 AAAGAAAGGAG
26266737 AAAGAAAGGAG
1 AAAGAAAGGAG
26266748 AAA
1 AAA
26266751 AATTAGGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (11 bp):
AAAGAAAGGAG
Found at i:26270065 original size:32 final size:32
Alignment explanation
Indices: 26270020--26270113 Score: 95
Period size: 32 Copynumber: 2.9 Consensus size: 32
26270010 TAATTAATAA
**
26270020 TTTTAATAA-TAATAATCATCTAAT-AAATATC
1 TTTTAATAATTAATAAT-AAATAATAAAATATC
*
26270051 TTTTATTAATTAATAATAAATAATAAAATATC
1 TTTTAATAATTAATAATAAATAATAAAATATC
*
26270083 TTTTCACTAATT-ATACATAAATAATACAAAT
1 TTTT-AATAATTAATA-ATAAATAATA-AAAT
26270114 GTGCTTATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
31 13 0.24
32 21 0.39
33 16 0.30
34 4 0.07
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (32 bp):
TTTTAATAATTAATAATAAATAATAAAATATC
Found at i:26270103 original size:33 final size:32
Alignment explanation
Indices: 26270040--26270113 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 32
26270030 AATAATCATC
*
26270040 TAAT-AAATATCTTTTATTAATTAATAATAAA
1 TAATAAAATATCTTTTACTAATTAATAATAAA
26270071 TAATAAAATATCTTTTCACTAATT-ATACATAAA
1 TAATAAAATATCTTTT-ACTAATTAATA-ATAAA
26270104 TAATACAAAT
1 TAATA-AAAT
26270114 GTGCTTATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
31 4 0.11
32 14 0.37
33 16 0.42
34 4 0.11
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (32 bp):
TAATAAAATATCTTTTACTAATTAATAATAAA
Found at i:26276439 original size:40 final size:40
Alignment explanation
Indices: 26276382--26276477 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
26276372 ATGACAAAGA
26276382 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
26276423 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
26276463 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
26276478 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:26279827 original size:47 final size:46
Alignment explanation
Indices: 26279753--26279901 Score: 141
Period size: 47 Copynumber: 3.2 Consensus size: 46
26279743 GGGAGTTTAG
*
26279753 CGTGCTCTCTGAT-TATTAGCACATCAGTGCTCTCTGTTTAGCACAT
1 CGTGCTCTCTGATAT-TTAGCACGTCAGTGCTCTCTGTTTAGCACAT
26279799 CGGTGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGAATATTAG--CA-
1 C-GTGCTCTCTGATATTTAGCACGTCAGTGCTCTCTG--T-TTAGCACAT
* * *
26279846 C--GCTCTCTGATCA-CTAGCACGTTAGTGCTCTCCGTTTAGCACATT
1 CGTGCTCTCTGAT-ATTTAGCACGTCAGTGCTCTCTGTTTAGCACA-T
*
26279891 TGTGCTCTCTG
1 CGTGCTCTCTG
26279902 TACAAGTCCC
Statistics
Matches: 86, Mismatches: 5, Indels: 23
0.75 0.04 0.20
Matches are distributed among these distances:
41 4 0.05
42 1 0.01
43 2 0.02
44 28 0.33
45 1 0.01
46 1 0.01
47 41 0.48
48 3 0.03
49 1 0.01
50 4 0.05
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (46 bp):
CGTGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGTTTAGCACAT
Found at i:26279847 original size:25 final size:24
Alignment explanation
Indices: 26279754--26279846 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 24
26279744 GGAGTTTAGC
26279754 GTGCTCTCTGATTATTAGCACATCA
1 GTGCTCTCTGA-TATTAGCACATCA
*
26279779 GTGCTCTCTG-T-TTAGCACATCG
1 GTGCTCTCTGATATTAGCACATCA
*
26279801 GTGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATA-TTAGCACATCA
26279826 GTGCTCTCTGAATATTAGCAC
1 GTGCTCTCTG-ATATTAGCAC
26279847 GCTCTCTGAT
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
22 20 0.33
23 2 0.03
25 36 0.59
26 3 0.05
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.35
Consensus pattern (24 bp):
GTGCTCTCTGATATTAGCACATCA
Found at i:26279863 original size:19 final size:19
Alignment explanation
Indices: 26279828--26279866 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26279818 GCACGTCAGT
*
26279828 GCTCTCTGAATATTAGCAC
1 GCTCTCTGAATACTAGCAC
26279847 GCTCTCTG-ATCACTAGCAC
1 GCTCTCTGAAT-ACTAGCAC
26279866 G
1 G
26279867 TTAGTGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (19 bp):
GCTCTCTGAATACTAGCAC
Found at i:26280817 original size:13 final size:13
Alignment explanation
Indices: 26280801--26280828 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26280791 CGATTTCTTC
26280801 TGGGTATTCTATA
1 TGGGTATTCTATA
26280814 TGGGTATTCTATA
1 TGGGTATTCTATA
26280827 TG
1 TG
26280829 CTCTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
TGGGTATTCTATA
Found at i:26281143 original size:12 final size:12
Alignment explanation
Indices: 26281128--26281167 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
26281118 TTCTTCTTTT
26281128 GGATTTTCTCTG
1 GGATTTTCTCTG
* * *
26281140 GGATATTCTTTT
1 GGATTTTCTCTG
26281152 GGATTTTCTCTG
1 GGATTTTCTCTG
26281164 GGAT
1 GGAT
26281168 ATCATCGATC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.12, C:0.12, G:0.25, T:0.50
Consensus pattern (12 bp):
GGATTTTCTCTG
Found at i:26281153 original size:24 final size:24
Alignment explanation
Indices: 26281121--26281169 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
26281111 AGTGATATTC
26281121 TTCTTTTGGATTTTCTCTGGGATA
1 TTCTTTTGGATTTTCTCTGGGATA
26281145 TTCTTTTGGATTTTCTCTGGGATA
1 TTCTTTTGGATTTTCTCTGGGATA
26281169 T
1 T
26281170 CATCGATCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.12, G:0.20, T:0.55
Consensus pattern (24 bp):
TTCTTTTGGATTTTCTCTGGGATA
Found at i:26282908 original size:40 final size:40
Alignment explanation
Indices: 26282851--26282946 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
26282841 ATGACAAAGA
26282851 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
26282892 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
26282932 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
26282947 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:26286252 original size:15 final size:14
Alignment explanation
Indices: 26286234--26286264 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
26286224 TTAATTTATT
26286234 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
26286249 TAATAATAATCTAA
1 TAATAATAATCTAA
26286263 TA
1 TA
26286265 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:26286275 original size:21 final size:20
Alignment explanation
Indices: 26286251--26286319 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
26286241 AATGCTAATA
26286251 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
26286272 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
26286291 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
26286312 ATAATAAT
1 ATAATAAT
26286320 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:26287527 original size:19 final size:19
Alignment explanation
Indices: 26287499--26287549 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
26287489 TGTCTCCAAA
*
26287499 ATCTCAATGTGAACCGAGG
1 ATCTCGATGTGAACCGAGG
26287518 ATCTCGATGTGAACCGAGG
1 ATCTCGATGTGAACCGAGG
*
26287537 ATCTCGATCTGAA
1 ATCTCGATGTGAA
26287550 ATTATTGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (19 bp):
ATCTCGATGTGAACCGAGG
Found at i:26293484 original size:14 final size:14
Alignment explanation
Indices: 26293460--26293492 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
26293450 TCCCTGCTTC
26293460 GTTTCTGTTTCTTTT
1 GTTTCTGTTTC-TTT
26293475 GTTT-TGTTTCTTT
1 GTTTCTGTTTCTTT
26293488 GTTTC
1 GTTTC
26293493 CTTAATTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.41
14 6 0.35
15 4 0.24
ACGTcount: A:0.00, C:0.12, G:0.15, T:0.73
Consensus pattern (14 bp):
GTTTCTGTTTCTTT
Found at i:26293824 original size:15 final size:14
Alignment explanation
Indices: 26293806--26293836 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
26293796 TTAATTTATT
26293806 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
26293821 TAATAATAATCTAA
1 TAATAATAATCTAA
26293835 TA
1 TA
26293837 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:26293847 original size:21 final size:20
Alignment explanation
Indices: 26293823--26293891 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
26293813 AATGCTAATA
26293823 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
26293844 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
26293863 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
26293884 ATAATAAT
1 ATAATAAT
26293892 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:26296649 original size:25 final size:25
Alignment explanation
Indices: 26296618--26296668 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
26296608 TAGCCGAAGT
26296618 AAAGCGGTACCCAGTACCTCATCGA
1 AAAGCGGTACCCAGTACCTCATCGA
*
26296643 AAAGCGGTATCCAGTACCTCATCGA
1 AAAGCGGTACCCAGTACCTCATCGA
26296668 A
1 A
26296669 TCTATCCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (25 bp):
AAAGCGGTACCCAGTACCTCATCGA
Found at i:26297841 original size:15 final size:16
Alignment explanation
Indices: 26297821--26297854 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
26297811 TTTCATATCT
26297821 ATTTGTTTTAT-TTTA
1 ATTTGTTTTATATTTA
*
26297836 ATTTGTTTTCTATTTA
1 ATTTGTTTTATATTTA
26297852 ATT
1 ATT
26297855 AATTAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.71
Consensus pattern (16 bp):
ATTTGTTTTATATTTA
Found at i:26298054 original size:33 final size:32
Alignment explanation
Indices: 26297991--26298066 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 32
26297981 AATAATCATC
26297991 TAAT-AAATATCTTTTACTAATTAATAATAAA
1 TAATAAAATATCTTTTACTAATTAATAATAAA
* *
26298022 TAATAAAATATTTTTTCGCTAATT-ATACATAAA
1 TAATAAAATATCTTTT-ACTAATTAATA-ATAAA
26298055 TAATACAAATAT
1 TAATA-AAATAT
26298067 ACTTATTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
31 4 0.10
32 13 0.33
33 16 0.41
34 6 0.15
ACGTcount: A:0.50, C:0.08, G:0.01, T:0.41
Consensus pattern (32 bp):
TAATAAAATATCTTTTACTAATTAATAATAAA
Found at i:26303222 original size:21 final size:21
Alignment explanation
Indices: 26303181--26303222 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
26303171 TTAACTGCTT
**
26303181 AATTGCATTTTTATATTTTGA
1 AATTGCATTTTTATAAATTGA
26303202 AATTAGCATTTTTA-AAATTGA
1 AATT-GCATTTTTATAAATTGA
26303223 CATATAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.50
Consensus pattern (21 bp):
AATTGCATTTTTATAAATTGA
Found at i:26308835 original size:17 final size:17
Alignment explanation
Indices: 26308813--26308851 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
26308803 TCTAAGTTTA
26308813 ATTTTTTTATATTTTCT
1 ATTTTTTTATATTTTCT
* *
26308830 ATTTTTTTCTTTTTTCT
1 ATTTTTTTATATTTTCT
26308847 -TTTTT
1 ATTTTT
26308852 GATAAAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.82
Consensus pattern (17 bp):
ATTTTTTTATATTTTCT
Found at i:26313235 original size:21 final size:22
Alignment explanation
Indices: 26313196--26313244 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
26313186 TACTATTTAG
* * *
26313196 TATATTTTAAATTCTAATATAC
1 TATATTTAAAATTCGAATAAAC
*
26313218 TATATTTAAAATT-GAATAAAT
1 TATATTTAAAATTCGAATAAAC
26313239 TATATT
1 TATATT
26313245 AGTATCATCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (22 bp):
TATATTTAAAATTCGAATAAAC
Found at i:26313586 original size:7 final size:7
Alignment explanation
Indices: 26313574--26313599 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26313564 AACTCGAATA
26313574 TTAAATC
1 TTAAATC
26313581 TTAAATC
1 TTAAATC
26313588 TTAAATC
1 TTAAATC
26313595 TTAAA
1 TTAAA
26313600 CCTTGAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (7 bp):
TTAAATC
Found at i:26321169 original size:19 final size:18
Alignment explanation
Indices: 26321147--26321195 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
26321137 TTAGTGATTT
*
26321147 TTAAAAAAATTAATTTTAA
1 TTAAAAAAATTAA-ATTAA
*
26321166 TTAAGTAAAATTAAATTAA
1 TTAA-AAAAATTAAATTAA
26321185 TTAAAATAAAT
1 TTAAAA-AAAT
26321196 GTGATATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 8 0.32
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
TTAAAAAAATTAAATTAA
Found at i:26321650 original size:37 final size:41
Alignment explanation
Indices: 26321622--26321704 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 41
26321612 TATTGTTTTA
26321622 ATGAAT-TCA-ATATTAAATTTAATTTAATATTTGTCTAGAT
1 ATGAATATCAGATATTAAATTTAATTTAATA-TTGTCTAGAT
* * *
26321662 ATTAATATGAGATATTAAATTTAATTTAATATTTATCTAGAT
1 ATGAATATCAGATATTAAATTTAATTTAATA-TTGTCTAGAT
26321704 A
1 A
26321705 ATATTTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 5 0.13
41 2 0.05
42 31 0.82
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (41 bp):
ATGAATATCAGATATTAAATTTAATTTAATATTGTCTAGAT
Found at i:26321733 original size:16 final size:15
Alignment explanation
Indices: 26321682--26321734 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 15
26321672 GATATTAAAT
26321682 TTAATTTAATATTTA
1 TTAATTTAATATTTA
26321697 TCTAGA--TAATATTTTA
1 T-TA-ATTTAATA-TTTA
26321713 TTAATTTAATATTTA
1 TTAATTTAATATTTA
26321728 TGTAATT
1 T-TAATT
26321735 AATTTTAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
14 1 0.03
15 13 0.41
16 17 0.53
17 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.57
Consensus pattern (15 bp):
TTAATTTAATATTTA
Found at i:26321736 original size:15 final size:14
Alignment explanation
Indices: 26321682--26321741 Score: 52
Period size: 15 Copynumber: 4.0 Consensus size: 14
26321672 GATATTAAAT
26321682 TTAATTTAATATTTA
1 TTAA-TTAATATTTA
26321697 TCTAGA-TAATATTTTA
1 T-TA-ATTAATA-TTTA
26321713 TTAATTTAATATTTA
1 TTAA-TTAATATTTA
26321728 TGTAATTAAT-TTTA
1 T-TAATTAATATTTA
26321742 ATTCTTGTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
14 5 0.13
15 18 0.46
16 15 0.38
17 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (14 bp):
TTAATTAATATTTA
Found at i:26337373 original size:19 final size:20
Alignment explanation
Indices: 26337330--26337374 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
26337320 TTGGTCACTT
*
26337330 ATTTTAGTCACTCAATTTCC
1 ATTTTAGTCACTCAATTTAC
26337350 ATTTTAGTCACT-AATTTAC
1 ATTTTAGTCACTCAATTTAC
*
26337369 TTTTTA
1 ATTTTA
26337375 AAGATTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.27, C:0.18, G:0.04, T:0.51
Consensus pattern (20 bp):
ATTTTAGTCACTCAATTTAC
Found at i:26344292 original size:167 final size:168
Alignment explanation
Indices: 26343992--26344294 Score: 473
Period size: 167 Copynumber: 1.8 Consensus size: 168
26343982 ATAGATAATC
* * * * *
26343992 AAGAAAAGTTGTTCAGTATTCATCACTGTTTCATTTCAGCTATCTAATGAAGTTCCAGTTCCAAC
1 AAGAAAAGCTGTTCAATATTCATCAATGTTTCATTTCAGCAATCTAATGAAGTTCCAATTCCAAC
* * *
26344057 ACAGATGAATGAATGATTGTCTAATTAACAGGTGCTAGTTCAAGAACAATGACTTCCAATTATTA
66 ACAGATCAATGAATGATTGTCTAATTAACAGCTGCTAGTTCAAGAACAATAACTTCCAATTATTA
26344122 CCCAATATTTAACGTTTCATTTCAGCAATTTGTAAACA
131 CCCAATATTTAACGTTTCATTTCAGCAATTTGTAAACA
* *
26344160 AAGAAAA-CTGTTCAATATTCATCAATGTTTCATTTCAGCAATTTAATGAAGTTCCAATTCCAAT
1 AAGAAAAGCTGTTCAATATTCATCAATGTTTCATTTCAGCAATCTAATGAAGTTCCAATTCCAAC
* * * *
26344224 ACAGATCAATGAATGATTGTGTAATTAACAGCTGCTAGTTCAAGAACAATAACTTTCATTTTTTA
66 ACAGATCAATGAATGATTGTCTAATTAACAGCTGCTAGTTCAAGAACAATAACTTCCAATTATTA
26344289 CCCAAT
131 CCCAAT
26344295 CTTTCAAGCA
Statistics
Matches: 121, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
167 114 0.94
168 7 0.06
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (168 bp):
AAGAAAAGCTGTTCAATATTCATCAATGTTTCATTTCAGCAATCTAATGAAGTTCCAATTCCAAC
ACAGATCAATGAATGATTGTCTAATTAACAGCTGCTAGTTCAAGAACAATAACTTCCAATTATTA
CCCAATATTTAACGTTTCATTTCAGCAATTTGTAAACA
Found at i:26346516 original size:43 final size:42
Alignment explanation
Indices: 26346468--26346556 Score: 151
Period size: 43 Copynumber: 2.1 Consensus size: 42
26346458 GTCGAATATG
26346468 ATAGGAGAAGACAACTTATATTAGTAGGAGGTCTAAATAGTT
1 ATAGGAGAAGACAACTTATATTAGTAGGAGGTCTAAATAGTT
* *
26346510 CATAGGAGAAGACAACTTATGTTAGTAGGTGGTCTAAATAGTT
1 -ATAGGAGAAGACAACTTATATTAGTAGGAGGTCTAAATAGTT
26346553 ATAG
1 ATAG
26346557 TCTGAAGAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
42 4 0.09
43 40 0.91
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (42 bp):
ATAGGAGAAGACAACTTATATTAGTAGGAGGTCTAAATAGTT
Found at i:26349563 original size:18 final size:18
Alignment explanation
Indices: 26349530--26349588 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
26349520 TAAATAAAGG
26349530 TACTGAATAA-TGGACTGC
1 TACTGAATAACT-GACTGC
*
26349548 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGC
* * * *
26349566 TATTGGATCACTGATTGC
1 TACTGAATAACTGACTGC
26349584 TACTG
1 TACTG
26349589 CGTAAAAAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
18 32 0.97
19 1 0.03
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (18 bp):
TACTGAATAACTGACTGC
Found at i:26355137 original size:43 final size:43
Alignment explanation
Indices: 26355076--26355245 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 43
26355066 GTTATCGAGA
*
26355076 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * *
26355119 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCGTCTTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT-TGTAT
* * * * * * * * *
26355163 T-CGATTTCGTATAAGACCCTGTTTGGGCCAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
26355204 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
26355246 CGAGCTTATA
Statistics
Matches: 96, Mismatches: 27, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
41 1 0.01
42 8 0.08
43 83 0.86
44 4 0.04
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:26360189 original size:50 final size:50
Alignment explanation
Indices: 26360074--26360314 Score: 268
Period size: 50 Copynumber: 4.7 Consensus size: 50
26360064 CATGCCAAAA
* ** * * *
26360074 CCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGGTGCCAATG
* *
26360125 CCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAATG
* * *
26360175 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAATG
* *
26360225 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGGATGTCAATG
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG-TGCCAATG
* *
26360281 CCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCT
26360315 TTACCCAAAT
Statistics
Matches: 163, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.56
51 27 0.17
53 2 0.01
54 1 0.01
55 2 0.01
56 38 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAATG
Found at i:26360243 original size:100 final size:104
Alignment explanation
Indices: 26360065--26360314 Score: 339
Period size: 100 Copynumber: 2.4 Consensus size: 104
26360055 TGATAATAAC
** **
26360065 ATGCCAAAACCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
26360130 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
*
26360167 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
26360230 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* * *
26360272 ATGTCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26360315 TTACCCAAAT
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 35 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 39 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:26360430 original size:13 final size:13
Alignment explanation
Indices: 26360409--26360440 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26360399 GCTTGGATCA
*
26360409 TCATCAAATAAAT
1 TCATAAAATAAAT
26360422 TCATAAAATAAAT
1 TCATAAAATAAAT
26360435 TCATAA
1 TCATAA
26360441 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:26363868 original size:68 final size:68
Alignment explanation
Indices: 26363757--26363897 Score: 255
Period size: 68 Copynumber: 2.1 Consensus size: 68
26363747 AGTTAGGCCA
* * *
26363757 TGTGTCCCCTGCACCTTAATTTTGAGAAATAGAATGCTTAAAATTGAGCACGCGGGCAGAGACAC
1 TGTGTCCCCTGCACCTTAATTTTGAGAAATAGAATGCTCAAAATTGAGCACACAGGCAGAGACAC
26363822 GGG
66 GGG
26363825 TGTGTCCCCTGCACCTTAATTTTGAGAAATAGAATGCTCAAAATTGAGCACACAGGCAGAGACAC
1 TGTGTCCCCTGCACCTTAATTTTGAGAAATAGAATGCTCAAAATTGAGCACACAGGCAGAGACAC
26363890 GGG
66 GGG
26363893 TGTGT
1 TGTGT
26363898 GTCTCAACCG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24
Consensus pattern (68 bp):
TGTGTCCCCTGCACCTTAATTTTGAGAAATAGAATGCTCAAAATTGAGCACACAGGCAGAGACAC
GGG
Found at i:26365850 original size:36 final size:36
Alignment explanation
Indices: 26365781--26365860 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
26365771 TGTCAGGGAG
* *
26365781 TGTTGGGCACACCCATTTGTCGATTGTATCGACCAA
1 TGTTGGGCACACCCATTTGTCGATTATACCGACCAA
* * * *
26365817 TGTTGGGCACATCTATTTGTCGGTTATACCGACCAG
1 TGTTGGGCACACCCATTTGTCGATTATACCGACCAA
*
26365853 TGTAGGGC
1 TGTTGGGC
26365861 GCAACTTACT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.20, C:0.23, G:0.26, T:0.31
Consensus pattern (36 bp):
TGTTGGGCACACCCATTTGTCGATTATACCGACCAA
Found at i:26369702 original size:23 final size:23
Alignment explanation
Indices: 26369676--26369720 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26369666 TAGGTATGTG
*
26369676 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
26369699 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
26369721 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:26377309 original size:21 final size:21
Alignment explanation
Indices: 26377283--26377335 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
26377273 CGCTGTTTCT
* *
26377283 AATCTCATCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
26377304 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
26377325 AATCTCACCGC
1 AATCTCACCGC
26377336 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:26378800 original size:21 final size:22
Alignment explanation
Indices: 26378773--26378828 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
26378763 ATAGTGCTGA
* *
26378773 CGGTGAGATTAG-TTACTGTAG
1 CGGTGAGATTAGAATACTATAG
*
26378794 TGGTGAGATT-GAATACTATAG
1 CGGTGAGATTAGAATACTATAG
26378815 CGGTGAGATTAGAA
1 CGGTGAGATTAGAA
26378829 ACAATAGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 1 0.03
21 25 0.86
22 3 0.10
ACGTcount: A:0.30, C:0.07, G:0.32, T:0.30
Consensus pattern (22 bp):
CGGTGAGATTAGAATACTATAG
Found at i:26378835 original size:21 final size:21
Alignment explanation
Indices: 26378795--26378835 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26378785 TTACTGTAGT
*
26378795 GGTGAGATTGAATACTATAGC
1 GGTGAGATTGAATACAATAGC
26378816 GGTGAGATTAGAA-ACAATAG
1 GGTGAGATT-GAATACAATAG
26378836 TGGAATGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.39, C:0.07, G:0.29, T:0.24
Consensus pattern (21 bp):
GGTGAGATTGAATACAATAGC
Found at i:26386424 original size:24 final size:23
Alignment explanation
Indices: 26386397--26386463 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
26386387 AAGCTCATTA
*
26386397 TGAGCTGATAACAGTGAA-CTCGAT
1 TGAGCTGA-AAC-GGGAAGCTCGAT
*
26386421 TGAGCTGGAAACGGGAAGCTCTAT
1 TGAGCT-GAAACGGGAAGCTCGAT
26386445 TGAGCTG-AACGGGAAGCTC
1 TGAGCTGAAACGGGAAGCTC
26386464 ATACGAGCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
22 12 0.31
23 5 0.13
24 20 0.51
25 2 0.05
ACGTcount: A:0.30, C:0.18, G:0.31, T:0.21
Consensus pattern (23 bp):
TGAGCTGAAACGGGAAGCTCGAT
Found at i:26386458 original size:22 final size:24
Alignment explanation
Indices: 26386419--26386463 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 24
26386409 AGTGAACTCG
26386419 ATTGAGCTGGAAACGGGAAGCTCT
1 ATTGAGCTGGAAACGGGAAGCTCT
26386443 ATTGAGCT-G-AACGGGAAGCTC
1 ATTGAGCTGGAAACGGGAAGCTC
26386464 ATACGAGCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 12 0.57
23 1 0.05
24 8 0.38
ACGTcount: A:0.29, C:0.18, G:0.33, T:0.20
Consensus pattern (24 bp):
ATTGAGCTGGAAACGGGAAGCTCT
Found at i:26386471 original size:22 final size:22
Alignment explanation
Indices: 26386430--26386472 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26386420 TTGAGCTGGA
*
26386430 AACGGGAAGCTCTATTGAGCTG
1 AACGGGAAGCTCTATCGAGCTG
26386452 AACGGGAAGCTC-ATACGAGCT
1 AACGGGAAGCTCTAT-CGAGCT
26386473 ATGGTGAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.30, C:0.21, G:0.30, T:0.19
Consensus pattern (22 bp):
AACGGGAAGCTCTATCGAGCTG
Found at i:26393781 original size:32 final size:32
Alignment explanation
Indices: 26393745--26393904 Score: 239
Period size: 32 Copynumber: 5.0 Consensus size: 32
26393735 TATAACTATG
26393745 CTACTTTTTTATATGTAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
26393777 CTACTTTTTCATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
26393809 CTACTTTTTTATATGTGAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* * *
26393841 ATACTTTTTTATATGCAAAACTAATGTATGGT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
26393873 CTACTTTTTTATAGGTAAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
26393905 ATTTTTTATG
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 112 1.00
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (32 bp):
CTACTTTTTTATATGTAAAACTAATGTATGAT
Found at i:26393846 original size:64 final size:64
Alignment explanation
Indices: 26393745--26393906 Score: 270
Period size: 64 Copynumber: 2.5 Consensus size: 64
26393735 TATAACTATG
* *
26393745 CTACTTTTTTATATGTAAAACTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAACCTAATGTATGATATACTTTTTCATATGCAAAACTAATGTATGAT
* * *
26393809 CTACTTTTTTATATGTGAACCTAATGTATGATATACTTTTTTATATGCAAAACTAATGTATGGT
1 CTACTTTTTTATATGTAAACCTAATGTATGATATACTTTTTCATATGCAAAACTAATGTATGAT
*
26393873 CTACTTTTTTATAGGTAAACCTAATGTATGATAT
1 CTACTTTTTTATATGTAAACCTAATGTATGATAT
26393907 TTTTTATGTT
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 91 1.00
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (64 bp):
CTACTTTTTTATATGTAAACCTAATGTATGATATACTTTTTCATATGCAAAACTAATGTATGAT
Found at i:26395938 original size:21 final size:21
Alignment explanation
Indices: 26395914--26395985 Score: 117
Period size: 21 Copynumber: 3.4 Consensus size: 21
26395904 CATTGTTTCT
*
26395914 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
26395935 AATCTCACCGCTACAATAACC
1 AATCTCACCGCTACAGTAACC
*
26395956 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
26395977 AATCTCACC
1 AATCTCACC
26395986 CCCACCGCTG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.33, C:0.38, G:0.07, T:0.22
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:26396339 original size:13 final size:14
Alignment explanation
Indices: 26396314--26396342 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26396304 TTATATATTT
26396314 TTATTTTTCAAAAA
1 TTATTTTTCAAAAA
26396328 TTATTTTT-AAAAA
1 TTATTTTTCAAAAA
26396341 TT
1 TT
26396343 TCAACCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TTATTTTTCAAAAA
Found at i:26397073 original size:25 final size:25
Alignment explanation
Indices: 26397044--26397094 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
26397034 CAAAGAAAAA
** *
26397044 TCCTAATCTAATTCCTAGTTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
26397069 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
26397094 T
1 T
26397095 TTATAAGGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:26401741 original size:25 final size:25
Alignment explanation
Indices: 26401712--26401762 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
26401702 CAAAGGAAAA
**
26401712 TCCTAATCTAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
26401737 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
26401762 T
1 T
26401763 TTATAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:26413833 original size:16 final size:17
Alignment explanation
Indices: 26413798--26413847 Score: 54
Period size: 16 Copynumber: 3.1 Consensus size: 17
26413788 TATTTTATAA
26413798 AAATATATATAAATATT
1 AAATATATATAAATATT
26413815 AAATATA-ATAAAT-TAT
1 AAATATATATAAATAT-T
*
26413831 AAAT-TTTATAAA-ATT
1 AAATATATATAAATATT
26413846 AA
1 AA
26413848 TAATTTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
15 5 0.17
16 17 0.59
17 7 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATATATATAAATATT
Found at i:26414945 original size:4 final size:4
Alignment explanation
Indices: 26414928--26414961 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
26414918 AGCCCAAAGT
*
26414928 CATA CATT CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CATA CATA CA
26414962 AAAGAGTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (4 bp):
CATA
Found at i:26418696 original size:21 final size:21
Alignment explanation
Indices: 26418670--26418710 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26418660 ATCTGCTCAA
* *
26418670 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
26418691 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
26418711 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:26423472 original size:17 final size:18
Alignment explanation
Indices: 26423441--26423482 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
26423431 TAAATATGTT
*
26423441 TTTATTA-ATTTTAT-AA
1 TTTATTAGAATTTATAAA
26423457 TTTATTAGAATTTATAAA
1 TTTATTAGAATTTATAAA
26423475 TTT-TTAGA
1 TTTATTAGA
26423483 TTTTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 7 0.30
17 11 0.48
18 5 0.22
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTATTAGAATTTATAAA
Found at i:26423489 original size:46 final size:45
Alignment explanation
Indices: 26423439--26423536 Score: 110
Period size: 46 Copynumber: 2.1 Consensus size: 45
26423429 TTTAAATATG
*
26423439 TTTTTATTAATTTTATAATTTATTAGAA-TT-TATAAATTTTTAGATT
1 TTTTTATT--TTTTATAAATT-TTAGAACTTATATAAATTTTTAGATT
* * *
26423485 TTTTTATTTTTTATAAATTTTATAACTTGATATCAATTTTTATATT
1 TTTTTATTTTTTATAAATTTTAGAACTT-ATATAAATTTTTAGATT
26423531 TTTTTA
1 TTTTTA
26423537 AATATTTAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
43 5 0.11
44 12 0.27
46 28 0.62
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (45 bp):
TTTTTATTTTTTATAAATTTTAGAACTTATATAAATTTTTAGATT
Found at i:26423533 original size:38 final size:37
Alignment explanation
Indices: 26423482--26423573 Score: 100
Period size: 38 Copynumber: 2.5 Consensus size: 37
26423472 AAATTTTTAG
*
26423482 ATTTTTTTATTTTTTATAAAT-TTT-ATAACTTGATAT
1 ATTTTTATATTTTTTATAAATATTTAATAACTTG-TAT
*
26423518 CAATTTTTATATTTTTT-TAAATATTTAATAATTTGTAT
1 --ATTTTTATATTTTTTATAAATATTTAATAACTTGTAT
*
26423556 ATTTTTAAATATTTTTAT
1 ATTTTTATAT-TTTTTAT
26423574 GATTTTTAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
36 9 0.19
37 10 0.21
38 21 0.45
39 7 0.15
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (37 bp):
ATTTTTATATTTTTTATAAATATTTAATAACTTGTAT
Found at i:26423562 original size:18 final size:20
Alignment explanation
Indices: 26423541--26423585 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
26423531 TTTTTAAATA
26423541 TTTAATA-ATTTGTAT-ATT
1 TTTAATATATTTGTATGATT
*
26423559 TTTAA-ATATTTTTATGATT
1 TTTAATATATTTGTATGATT
26423578 TTTAATAT
1 TTTAATAT
26423586 CTTTATAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.04
18 12 0.52
19 8 0.35
20 2 0.09
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (20 bp):
TTTAATATATTTGTATGATT
Found at i:26423585 original size:28 final size:27
Alignment explanation
Indices: 26423519--26423590 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 27
26423509 ACTTGATATC
*
26423519 AATTTTTATATTTTTTTAAATATTTAAT
1 AATTTTTA-ATATTTTTAAATATTTAAT
* *
26423547 AATTTGT-ATATTTTTAAATATTTTTAT
1 AATTTTTAATATTTTTAAATA-TTTAAT
* *
26423574 GATTTTTAATATCTTTA
1 AATTTTTAATATTTTTA
26423591 TAGGAAAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 12 0.33
27 10 0.28
28 14 0.39
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.62
Consensus pattern (27 bp):
AATTTTTAATATTTTTAAATATTTAAT
Found at i:26423590 original size:18 final size:19
Alignment explanation
Indices: 26423556--26423591 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26423546 TAATTTGTAT
*
26423556 ATTTTTAAATATTTTTATG
1 ATTTTTAAATATCTTTATG
26423575 ATTTTT-AATATCTTTAT
1 ATTTTTAAATATCTTTAT
26423592 AGGAAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (19 bp):
ATTTTTAAATATCTTTATG
Found at i:26427146 original size:17 final size:17
Alignment explanation
Indices: 26427110--26427148 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26427100 GGAAAACAGT
*
26427110 TGAATTCTAATATTTAA
1 TGAATTCTAATATGTAA
* *
26427127 TGAATTTTAATATGTGA
1 TGAATTCTAATATGTAA
26427144 TGAAT
1 TGAAT
26427149 AATATTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.46
Consensus pattern (17 bp):
TGAATTCTAATATGTAA
Found at i:26438609 original size:37 final size:37
Alignment explanation
Indices: 26438559--26438635 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
26438549 GGATACATAG
*
26438559 AAATACTTAAGAAAAATTTATTTATTTAATTAATTGT
1 AAATACTTAAGAAAAATTAATTTATTTAATTAATTGT
26438596 AAATACTTAAGAAAAATTAATTTATTTAATTAATTGT
1 AAATACTTAAGAAAAATTAATTTATTTAATTAATTGT
26438633 AAA
1 AAA
26438636 AAGAATTCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (37 bp):
AAATACTTAAGAAAAATTAATTTATTTAATTAATTGT
Found at i:26450347 original size:27 final size:27
Alignment explanation
Indices: 26450285--26450354 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
26450275 TTGTATTCAA
* * * *
26450285 TTTTTATACTTTAATTTTTAACATAAT
1 TTTTTATATTTTTATATTCAACATAAT
26450312 TTTTTATATTTTTATATTCAACATAAT
1 TTTTTATATTTTTATATTCAACATAAT
26450339 TTTTTATATTTTTATA
1 TTTTTATATTTTTATA
26450355 ATATTGTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (27 bp):
TTTTTATATTTTTATATTCAACATAAT
Found at i:26457893 original size:18 final size:20
Alignment explanation
Indices: 26457848--26457893 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 20
26457838 TTTTGAGTAA
26457848 TTTAATTTTTTCTTTTATAT
1 TTTAATTTTTTCTTTTATAT
26457868 TCTT--TTTTTTC-TTTAT-T
1 T-TTAATTTTTTCTTTTATAT
26457885 TTTAATTTT
1 TTTAATTTT
26457894 CTTTTCCGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
16 2 0.09
17 2 0.09
18 9 0.39
19 7 0.30
20 1 0.04
21 2 0.09
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTAATTTTTTCTTTTATAT
Found at i:26460168 original size:30 final size:30
Alignment explanation
Indices: 26460133--26460212 Score: 81
Period size: 32 Copynumber: 2.6 Consensus size: 30
26460123 TTGAGATATT
*
26460133 AAAATATTATTTTATTATTTTTGAAGAGAC
1 AAAATATTATTTTATTATTTTTAAAGAGAC
* *
26460163 TAAATATACTTATTTT-TTATTTTTAAAGGGTC
1 -AAA-ATA-TTATTTTATTATTTTTAAAGAGAC
* *
26460195 AAAGTATAATTTTATTAT
1 AAAATATTATTTTATTAT
26460213 ATGCTATCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
29 6 0.15
30 6 0.15
31 6 0.15
32 16 0.39
33 7 0.17
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.50
Consensus pattern (30 bp):
AAAATATTATTTTATTATTTTTAAAGAGAC
Found at i:26461124 original size:24 final size:24
Alignment explanation
Indices: 26461088--26461144 Score: 80
Period size: 23 Copynumber: 2.4 Consensus size: 24
26461078 TTTTCAAAAA
* *
26461088 TAAAAAATTTTAATAAATCTTTTTT
1 TAAAAAATATTAATAAAT-ATTTTT
26461113 TAAAAAA-ATTAATAAATATTTTT
1 TAAAAAATATTAATAAATATTTTT
26461136 TAAAAAATA
1 TAAAAAATA
26461145 ATGAAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 12 0.41
24 10 0.34
25 7 0.24
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
TAAAAAATATTAATAAATATTTTT
Found at i:26462578 original size:15 final size:15
Alignment explanation
Indices: 26462558--26462665 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
26462548 TTTATGGAAA
26462558 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
26462573 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
26462587 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
26462603 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
26462617 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* * **
26462633 ATTAAATAT-TGGAA
1 ATCAAAGATATGGGT
26462647 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
26462663 ATC
1 ATC
26462666 GAGATATTGG
Statistics
Matches: 65, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
14 12 0.18
15 41 0.63
16 12 0.18
ACGTcount: A:0.44, C:0.06, G:0.22, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:26462595 original size:30 final size:30
Alignment explanation
Indices: 26462552--26462675 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
26462542 TCCATATTTA
* *
26462552 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
26462582 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
26462612 TGGAAAGTCAAAGATATGGGTATTAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
26462642 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
26462673 TGG
1 TGG
26462676 CATAATAAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 78 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:26467268 original size:15 final size:15
Alignment explanation
Indices: 26467248--26467355 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
26467238 TTTATGGAAA
26467248 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
26467263 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
26467277 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
26467293 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
26467307 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
26467323 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
26467337 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
26467353 ATC
1 ATC
26467356 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:26467285 original size:30 final size:30
Alignment explanation
Indices: 26467242--26467365 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
26467232 TCCATATTTA
* *
26467242 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
26467272 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
26467302 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
26467332 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
26467363 TGG
1 TGG
26467366 CATAATAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 80 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:26468394 original size:11 final size:12
Alignment explanation
Indices: 26468375--26468406 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
26468365 TAATTTTTAA
26468375 ATAATATATTTT
1 ATAATATATTTT
26468387 ATAA-ATATTTT
1 ATAATATATTTT
26468398 A-AATATATT
1 ATAATATATT
26468407 ATTTACTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 2 0.11
11 13 0.68
12 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
ATAATATATTTT
Found at i:26476572 original size:17 final size:18
Alignment explanation
Indices: 26476537--26476574 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
26476527 AATTTAAAAA
*
26476537 TGAGTTCAGTTTTAATTT
1 TGAGTTCAGTTCTAATTT
*
26476555 TGAGTT-AGTTCTACTTT
1 TGAGTTCAGTTCTAATTT
26476572 TGA
1 TGA
26476575 AATACCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.21, C:0.08, G:0.18, T:0.53
Consensus pattern (18 bp):
TGAGTTCAGTTCTAATTT
Found at i:26478834 original size:11 final size:11
Alignment explanation
Indices: 26478818--26478847 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
26478808 ATAAAAATAA
26478818 AAAAAATTTGC
1 AAAAAATTTGC
26478829 AAAAAATTTGC
1 AAAAAATTTGC
26478840 AAAAAATT
1 AAAAAATT
26478848 ATTTAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.27
Consensus pattern (11 bp):
AAAAAATTTGC
Found at i:26483724 original size:21 final size:21
Alignment explanation
Indices: 26483698--26483738 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26483688 ATCTGCTCAA
* *
26483698 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
26483719 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
26483739 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:26488537 original size:18 final size:18
Alignment explanation
Indices: 26488493--26488538 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 18
26488483 TTAAAAAAAC
* *
26488493 TTAAAAATAATATATTTA
1 TTAAAAATAAAATATTAA
*
26488511 TT--AATTAAAATATTAA
1 TTAAAAATAAAATATTAA
26488527 TTAAAAATAAAA
1 TTAAAAATAAAA
26488539 AACTTGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
16 13 0.59
18 9 0.41
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TTAAAAATAAAATATTAA
Found at i:26491857 original size:21 final size:22
Alignment explanation
Indices: 26491824--26491864 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
26491814 TGGGTAGTTG
*
26491824 TTATTAAACTGAGCAGAATACT
1 TTATGAAACTGAGCAGAATACT
26491846 TTATGAAA-TGAGCAGAATA
1 TTATGAAACTGAGCAGAATA
26491865 GCCGAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (22 bp):
TTATGAAACTGAGCAGAATACT
Found at i:26515538 original size:46 final size:46
Alignment explanation
Indices: 26515471--26515645 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
26515461 TGTAACCCGC
26515471 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
26515517 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * * *
26515567 -C-TCA-CGAACTTGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
26515610 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
26515646 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.58
47 25 0.23
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:26515592 original size:93 final size:93
Alignment explanation
Indices: 26515479--26515649 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
26515469 GCCCATAAGT
* * *
26515479 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26515544 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
26515572 GAACTTGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
26515637 CGAGTTCGGATGC
66 CGAGCTCGGATGC
26515650 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:26518137 original size:43 final size:43
Alignment explanation
Indices: 26518076--26518163 Score: 149
Period size: 43 Copynumber: 2.0 Consensus size: 43
26518066 CAAAGCTAGG
*
26518076 CATGGCCATGTACCACACACGCCCAAGACACACGGGCGTGGGA
1 CATGGCCATGTACCACACACGCCCAAGACACAAGGGCGTGGGA
* *
26518119 CATGGCCGTGTGCCACACACGCCCAAGACACAAGGGCGTGGGA
1 CATGGCCATGTACCACACACGCCCAAGACACAAGGGCGTGGGA
26518162 CA
1 CA
26518164 GCAGCCGGGT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.34, G:0.30, T:0.09
Consensus pattern (43 bp):
CATGGCCATGTACCACACACGCCCAAGACACAAGGGCGTGGGA
Found at i:26520015 original size:16 final size:15
Alignment explanation
Indices: 26519994--26520036 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
26519984 TATTTTTTTA
26519994 TTTATTTAGTCTTATT
1 TTTATTTA-TCTTATT
*
26520010 TTTATTTTATTTTATT
1 TTTA-TTTATCTTATT
26520026 TTTATTT-TCTT
1 TTTATTTATCTT
26520037 TTAATTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 3 0.12
15 3 0.12
16 14 0.58
17 4 0.17
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTATTTATCTTATT
Found at i:26520016 original size:6 final size:6
Alignment explanation
Indices: 26520005--26520078 Score: 59
Period size: 6 Copynumber: 13.2 Consensus size: 6
26519995 TTATTTAGTC
* *
26520005 TTATTT TTA-TT TTA-TT TTATTT TTA-TT TTCTTT TAATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
* * * *
26520050 TCA-TT TCAATT TTATTA TTA-TT TTATTT T
1 TTATTT TTATTT TTATTT TTATTT TTATTT T
26520079 GAAAGATATA
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
5 23 0.42
6 32 0.58
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (6 bp):
TTATTT
Found at i:26520019 original size:5 final size:5
Alignment explanation
Indices: 26520009--26520078 Score: 68
Period size: 5 Copynumber: 12.8 Consensus size: 5
26519999 TTAGTCTTAT
* *
26520009 TTTTA TTTTA TTTTA TTTTTA TTTTC TTTTAA TTTTTA TTTTCA TTTCAA
1 TTTTA TTTTA TTTTA -TTTTA TTTTA TTTT-A -TTTTA TTTT-A TTT-TA
26520059 TTTTA TTATTA TTTTA TTTT
1 TTTTA TT-TTA TTTTA TTTT
26520079 GAAAGATATA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
5 32 0.58
6 19 0.35
7 4 0.07
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:26520021 original size:11 final size:11
Alignment explanation
Indices: 26520005--26520078 Score: 71
Period size: 11 Copynumber: 6.6 Consensus size: 11
26519995 TTATTTAGTC
26520005 TTATTTTTATT
1 TTATTTTTATT
26520016 TTA-TTTTATTT
1 TTATTTTTA-TT
26520027 TTATTTTCT-TT
1 TTATTTT-TATT
*
26520038 TAATTTTTATT
1 TTATTTTTATT
**
26520049 TTCATTTCAATT
1 TT-ATTTTTATT
*
26520061 TTATTATTATT
1 TTATTTTTATT
26520072 TTATTTT
1 TTATTTT
26520079 GAAAGATATA
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
10 6 0.12
11 31 0.62
12 12 0.24
13 1 0.02
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:26520028 original size:17 final size:16
Alignment explanation
Indices: 26520005--26520078 Score: 94
Period size: 17 Copynumber: 4.4 Consensus size: 16
26519995 TTATTTAGTC
26520005 TTATTTTTATTTTATT
1 TTATTTTTATTTTATT
*
26520021 TTATTTTTATTTTCTT
1 TTATTTTTATTTTATT
26520037 TTAATTTTTATTTTCATT
1 TT-ATTTTTATTTT-ATT
* *
26520055 TCAATTTTATTATTATT
1 TTATTTTTATT-TTATT
26520072 TTATTTT
1 TTATTTT
26520079 GAAAGATATA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
16 17 0.35
17 27 0.55
18 5 0.10
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTTATTTTATT
Found at i:26525898 original size:3 final size:3
Alignment explanation
Indices: 26525892--26526008 Score: 80
Period size: 3 Copynumber: 40.0 Consensus size: 3
26525882 GTAAAAAAAC
* * * *
26525892 ATA ATA ATA TATA ATA GTA ATA ATA AT- ATA ATA AAA ATA GTA GTA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
** * * * * *
26525937 ATA GCA ATA A-A ATA ATA GTT ATA A-A ATA ATA CTA ATA GTA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
26525983 ATA ATA AT- ACA ATA GTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
26526009 GTAGTAGTAA
Statistics
Matches: 87, Mismatches: 22, Indels: 10
0.73 0.18 0.08
Matches are distributed among these distances:
2 7 0.08
3 77 0.89
4 3 0.03
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:26525932 original size:23 final size:23
Alignment explanation
Indices: 26525895--26526056 Score: 102
Period size: 23 Copynumber: 7.0 Consensus size: 23
26525885 AAAAAACATA
26525895 ATAATATATAATAGTAATAATAAT
1 ATAATA-ATAATAGTAATAATAAT
* *
26525919 ATAATAAAAATAGTAGTAATAGCA-
1 ATAATAATAATAGTAATAATA--AT
*
26525943 ATAA-AATAATAGT--T-ATAAA
1 ATAATAATAATAGTAATAATAAT
* *
26525962 ATAATACTAATAGTAGTAATAAT
1 ATAATAATAATAGTAATAATAAT
*
26525985 AATAAT-ACAATAGTAATAATAAT
1 -ATAATAATAATAGTAATAATAAT
* * *
26526008 AGTAGTAGTAATATTGAATTAATGAAT
1 A-TAATAATAATAGT-AA-TAAT-AAT
* * *
26526035 TTAATAATAATAGCAAAAATAA
1 ATAATAATAATAGTAATAATAA
26526057 CCAAAACGGG
Statistics
Matches: 107, Mismatches: 18, Indels: 27
0.70 0.12 0.18
Matches are distributed among these distances:
18 1 0.01
19 4 0.04
20 11 0.10
21 1 0.01
22 2 0.02
23 44 0.41
24 23 0.21
25 5 0.05
26 13 0.12
27 3 0.03
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (23 bp):
ATAATAATAATAGTAATAATAAT
Found at i:26525945 original size:26 final size:27
Alignment explanation
Indices: 26525892--26525953 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
26525882 GTAAAAAAAC
* *
26525892 ATAATAATATATAATAGTAATAATAAT
1 ATAATAATAAATAATAGTAATAACAAT
* *
26525919 ATAATAA-AAATAGTAGTAATAGCAAT
1 ATAATAATAAATAATAGTAATAACAAT
*
26525945 AAAATAATA
1 ATAATAATA
26525954 GTTATAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (27 bp):
ATAATAATAAATAATAGTAATAACAAT
Found at i:26525989 original size:43 final size:43
Alignment explanation
Indices: 26525892--26526008 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
26525882 GTAAAAAAAC
*
26525892 ATAATAAT-ATATAATAGTAATAATAATATAATAAAAATAGTAGTA
1 ATAATAATAATATAATAGT--T-ATAAAATAATAAAAATAGTAGTA
** * **
26525937 ATAGCAATAAAATAATAGTTATAAAATAATACTAATAGTAGTA
1 ATAATAATAATATAATAGTTATAAAATAATAAAAATAGTAGTA
* *
26525980 ATAATAATAATACAATAGTAATAATAATA
1 ATAATAATAATATAATAGTTATAA-AATA
26526009 GTAGTAGTAA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
43 39 0.66
44 5 0.08
45 6 0.10
46 9 0.15
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.32
Consensus pattern (43 bp):
ATAATAATAATATAATAGTTATAAAATAATAAAAATAGTAGTA
Found at i:26526755 original size:25 final size:25
Alignment explanation
Indices: 26526726--26526777 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
26526716 AATAGATTCG
*
26526726 AAAAGAAA-AGAAAGAAAATAAAATA
1 AAAAGAAAGA-AAAGAAAAAAAAATA
26526751 AAAAGAAAGAAAAGAAAAAAAAATA
1 AAAAGAAAGAAAAGAAAAAAAAATA
26526776 AA
1 AA
26526778 TAACAGTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.06
Consensus pattern (25 bp):
AAAAGAAAGAAAAGAAAAAAAAATA
Found at i:26526756 original size:20 final size:19
Alignment explanation
Indices: 26526725--26526773 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
26526715 AAATAGATTC
*
26526725 GAAAAGAAAAGAAAGAAAA
1 GAAAAAAAAAGAAAGAAAA
*
26526744 TAAAATAAAAAGAAAGAAAA
1 GAAAA-AAAAAGAAAGAAAA
26526764 GAAAAAAAAA
1 GAAAAAAAAA
26526774 TAAATAACAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (19 bp):
GAAAAAAAAAGAAAGAAAA
Found at i:26527759 original size:182 final size:182
Alignment explanation
Indices: 26527430--26527925 Score: 742
Period size: 182 Copynumber: 2.7 Consensus size: 182
26527420 GTTTGTAGTT
* * * * * * * *
26527430 TTCATCCTGCTCCACTGCAACTTTAGGAAGATAAAGTTTGTTATGATCTGCTCTATAGCAACTTT
1 TTCAACCTGCTCCTCTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTATTGCAACTTC
* *
26527495 AGAGAGATAAGATCTATTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGGT
66 AGAGAGATAAGATCTGTTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
*
26527560 TTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGTGAC
131 TTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGTGAC
26527612 TTCAACCTGCTCCTCTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTATTGCAACTTC
1 TTCAACCTGCTCCTCTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTATTGCAACTTC
* * *
26527677 AGAGAGATAAGATTTGTTTATTTATAGCTTCAATCTATTCTACTGCAACTTCAGGGAAATAAGAT
66 AGAGAGATAAGATCTGTTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
* * *
26527742 TTGCTGTCTTCAGTCTGCTCCACTGCATCTTCAGGGAGATAAGACTAGTGAC
131 TTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGTGAC
* * * *
26527794 TTCAA-CTGCTCCTCTGTAACTTCAGAGAGGTAAGGTTTGTTTTGATCTGCTCTACTGCAACTTC
1 TTCAACCTGCTCCTCTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTATTGCAACTTC
* * * * **
26527858 AGATAGATAAGATCTGTTTATTCATAGCTTTAATATGTTCCACTAAAACTTCAGGGAAATAAGAT
66 AGAGAGATAAGATCTGTTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
26527923 TTG
131 TTG
26527926 TAATCTCCAG
Statistics
Matches: 284, Mismatches: 30, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
181 114 0.40
182 170 0.60
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (182 bp):
TTCAACCTGCTCCTCTGCAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCTATTGCAACTTC
AGAGAGATAAGATCTGTTTATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
TTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGTGAC
Found at i:26527817 original size:43 final size:45
Alignment explanation
Indices: 26527718--26527827 Score: 116
Period size: 43 Copynumber: 2.5 Consensus size: 45
26527708 AATCTATTCT
* * * * *
26527718 ACTGCAACTTCAGGGAAATAAGATTTGCTGTCTTCAGTCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGACTAGCTGACTTCAGACTGCTCC
*
26527763 ACTGCATCTTCAGGGAGATAAGACTAG-TGACTTCA-ACTGCTCC
1 ACTGCAACTTCAGGGAGATAAGACTAGCTGACTTCAGACTGCTCC
* * * *
26527806 TCTGTAACTTCAGAGAGGTAAG
1 ACTGCAACTTCAGGGAGATAAG
26527828 GTTTGTTTTG
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 24 0.44
44 7 0.13
45 23 0.43
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (45 bp):
ACTGCAACTTCAGGGAGATAAGACTAGCTGACTTCAGACTGCTCC
Found at i:26528044 original size:44 final size:44
Alignment explanation
Indices: 26527910--26528045 Score: 111
Period size: 44 Copynumber: 3.1 Consensus size: 44
26527900 CTAAAACTTC
* *
26527910 AGGGAAATAAGATTTGTAATCTCCAGCCTGTTGCCCTACTGCTT
1 AGGGAGATAAGATTTGTAATTTCCAGCCTGTTGCCCTACTGCTT
* * * ** *
26527954 AGGG-GATTAAGACTCATTGT--CTTCGA-TCTACT-CCACAACTGCTT
1 AGGGAGA-TAAGA-T--TTGTAATTTCCAGCCTGTTGCC-CTACTGCTT
*
26527998 AGGGAGATAAGATTTGTAATTTCCAGCCTGTTGCCCTACTGTTT
1 AGGGAGATAAGATTTGTAATTTCCAGCCTGTTGCCCTACTGCTT
26528042 AGGG
1 AGGG
26528046 GGTTAAGGCT
Statistics
Matches: 67, Mismatches: 15, Indels: 20
0.66 0.15 0.20
Matches are distributed among these distances:
41 4 0.06
43 8 0.12
44 43 0.64
45 8 0.12
47 4 0.06
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.32
Consensus pattern (44 bp):
AGGGAGATAAGATTTGTAATTTCCAGCCTGTTGCCCTACTGCTT
Found at i:26528068 original size:88 final size:88
Alignment explanation
Indices: 26527910--26528709 Score: 1014
Period size: 88 Copynumber: 9.1 Consensus size: 88
26527900 CTAAAACTTC
* * * * * * *
26527910 AGGGAAATAAGATTTGTAATCTCCAGCCTGTTGCCCTACTGCTTAGGGGATTAAGACTCATTGTC
1 AGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCGTC
*
26527975 TTCGATCTACTCCACAACTGCTT
66 TTCGATCTACTCCACTACTGCTT
* * * *
26527998 AGGGAGATAAGATTTGTAAT-TTCCAGCCTGTTGCCCTACTGTTTAGGGGGTTAAGGCTCACCGT
1 AGGGAGATAAGATCTGTAATCTT-CAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCGT
* *
26528062 CGTCGATCTACCCCACTACTGCTT
65 CTTCGATCTACTCCACTACTGCTT
* * *
26528086 AGGGAGATAAGATATGTAATCTTCAGCCTGTTTCCCTACTACTTAGGGGGTTAAGGCTCGTCGTC
1 AGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCGTC
26528151 TTCGAT-T-CGTTCCACTACTGCTT
66 TTCGATCTAC--TCCACTACTGCTT
* * *
26528174 AGGGAGATAAGATCTGTAATCTGCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCATT
1 AGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCGTC
*
26528239 TTCGATCTACTCCACTACTGTTT
66 TTCGATCTACTCCACTACTGCTT
* * * *
26528262 AAGGAGATAAGATTTGTAATCTTCAGCCTGTTTCCCTATTGCTTAGGGGGTTAAGGCTCGTCGTC
1 AGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCGTC
** *
26528327 TTCGATCCGCTCCACTACTGCTC
66 TTCGATCTACTCCACTACTGCTT
* * * * *
26528350 AGGGAGATAAGATCTGTAATCTTTACCCTGTTTCCCTACTACTTAGGGGGTTAAAGCTCGTCGTC
1 AGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCGTC
*
26528415 TTCGATCT-CTCCACTACTGTTT
66 TTCGATCTACTCCACTACTGCTT
* * * *
26528437 ATGGAGATAAGATCCGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGTGGTTAAGGCTCACCGTC
1 AGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCGTC
* * *
26528502 TTTGATCTACTCCATTACTACTT
66 TTCGATCTACTCCACTACTGCTT
* * * ** * *
26528525 AGAGAGATGAGATCTGTAATCTTCAGCTTGTTTCCCTACTATTTAAGGGGTTAAGGCTCGTCGTC
1 AGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCGTC
* * *
26528590 TTCGATCTGCTGCACTACTGTTT
66 TTCGATCTACTCCACTACTGCTT
** * * * * *
26528613 AGGGAGATAAGGCCTGTAATCTTCAGTCAGTTTCCCAACTGCTTAGGAGGTTAAGGCTCACCGTC
1 AGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCGTC
*
26528678 TTCGATCTACTCTACTACTGCTT
66 TTCGATCTACTCCACTACTGCTT
26528701 AGGGAGATA
1 AGGGAGATA
26528710 GGATGGTGGC
Statistics
Matches: 611, Mismatches: 94, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
86 1 0.00
87 77 0.13
88 529 0.87
89 3 0.00
90 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (88 bp):
AGGGAGATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCATCGTC
TTCGATCTACTCCACTACTGCTT
Found at i:26528125 original size:44 final size:43
Alignment explanation
Indices: 26528077--26528483 Score: 218
Period size: 44 Copynumber: 9.3 Consensus size: 43
26528067 ATCTACCCCA
*
26528077 CTACTGCTTAGGGAGATAAGATATGTAATCTTCAGCCTGTTTCC
1 CTACTGCTTAGGGAGATAAGAT-CGTAATCTTCAGCCTGTTTCC
* * * * ** **
26528121 CTACTACTTAGGGGGTTAAGGCTCGTCGTCTTC-GATTCG-TTCC
1 CTACTGCTTAGGGAGATAA-GATCGTAATCTTCAGCCT-GTTTCC
*
26528164 ACTACTGCTTAGGGAGATAAGATCTGTAATCTGCAGCCTGTTTCC
1 -CTACTGCTTAGGGAGATAAGATC-GTAATCTTCAGCCTGTTTCC
* * * * * * * **
26528209 CTACTGCTTAGGGGGTTAAGGCTCATCATTTTC-GATCT-ACTCC
1 CTACTGCTTAGGGAGATAA-GATCGTAATCTTCAG-CCTGTTTCC
* * *
26528252 ACTACTGTTTAAGGAGATAAGATTTGTAATCTTCAGCCTGTTTCC
1 -CTACTGCTTAGGGAGATAAGA-TCGTAATCTTCAGCCTGTTTCC
* * * * ** * *
26528297 CTATTGCTTAGGGGGTTAAGGCTCGTCGTCTTCGATCC-G-CTCC
1 CTACTGCTTAGGGAGATAA-GATCGTAATCTTC-AGCCTGTTTCC
* * *
26528340 ACTACTGCTCAGGGAGATAAGATCTGTAATCTTTACCCTGTTTCC
1 -CTACTGCTTAGGGAGATAAGATC-GTAATCTTCAGCCTGTTTCC
* * * * ** * * *
26528385 CTACTACTTAGGGGGTTAAAGCTCGTCGTCTTC-G-ATCTCTCC
1 CTACTGCTTAGGGAGAT-AAGATCGTAATCTTCAGCCTGTTTCC
* *
26528427 ACTACTGTTTATGGAGATAAGATCCGTAATCTTCAGCCTGTTTCC
1 -CTACTGCTTAGGGAGATAAGAT-CGTAATCTTCAGCCTGTTTCC
26528472 CTACTGCTTAGG
1 CTACTGCTTAGG
26528484 TGGTTAAGGC
Statistics
Matches: 254, Mismatches: 86, Indels: 46
0.66 0.22 0.12
Matches are distributed among these distances:
42 9 0.04
43 43 0.17
44 170 0.67
45 32 0.13
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCGTAATCTTCAGCCTGTTTCC
Found at i:26528624 original size:44 final size:44
Alignment explanation
Indices: 26527945--26528797 Score: 192
Period size: 44 Copynumber: 19.5 Consensus size: 44
26527935 GCCTGTTGCC
* * * * *
26527945 CTACTGCTTAGGG-GATTAAGACTCATTGTCTTCGATCTACTCCA
1 CTACTGCTTAGGGAGA-TAAGGCTCGTCGTCTTCGATCTGCTTCA
* ** * ** * * *
26527989 CAACTGCTTAGGGAGATAAGATTTGTAAT-TTCCAGCCTG-TTGCC
1 CTACTGCTTAGGGAGATAAGGCTCGTCGTCTTCGA-TCTGCTT-CA
* * * ** * * **
26528033 CTACTGTTTAGGGGGTTAAGGCTCACCGTCGTCGATCTACCCCA
1 CTACTGCTTAGGGAGATAAGGCTCGTCGTCTTCGATCTGCTTCA
* * ** * * *
26528077 CTACTGCTTAGGGAGATAA-GATATGTAATCTTC-AGCCTGTTTCC
1 CTACTGCTTAGGGAGATAAGGCT-CGTCGTCTTCGA-TCTGCTTCA
* * *
26528121 CTACTACTTAGGGGGTTAAGGCTCGTCGTCTTCGAT-T-CGTTCCA
1 CTACTGCTTAGGGAGATAAGGCTCGTCGTCTTCGATCTGC-TT-CA
* ** * * * *
26528165 CTACTGCTTAGGGAGATAA-GATCTGTAATCTGC-AGCCTGTTTCC
1 CTACTGCTTAGGGAGATAAGGCTC-GTCGTCTTCGA-TCTGCTTCA
* * * * * * *
26528209 CTACTGCTTAGGGGGTTAAGGCTCATCATTTTCGATCTACTCCA
1 CTACTGCTTAGGGAGATAAGGCTCGTCGTCTTCGATCTGCTTCA
* * ** * ** * * *
26528253 CTACTGTTTAAGGAGATAAGATTTGTAATCTTC-AGCCTGTTTCC
1 CTACTGCTTAGGGAGATAAGGCTCGTCGTCTTCGA-TCTGCTTCA
* * * * *
26528297 CTATTGCTTAGGGGGTTAAGGCTCGTCGTCTTCGATCCGCTCCA
1 CTACTGCTTAGGGAGATAAGGCTCGTCGTCTTCGATCTGCTTCA
* * ** * * * *
26528341 CTACTGCTCAGGGAGATAA-GATCTGTAATCTT-TACCCTGTTTCC
1 CTACTGCTTAGGGAGATAAGGCTC-GTCGTCTTCGA-TCTGCTTCA
* * * * *
26528385 CTACTACTTAGGGGGTTAAAGCTCGTCGTCTTCGATCT-CTCCA
1 CTACTGCTTAGGGAGATAAGGCTCGTCGTCTTCGATCTGCTTCA
* * * ** * * *
26528428 CTACTGTTTATGGAGATAA-GATCCGTAATCTTC-AGCCTGTTTCC
1 CTACTGCTTAGGGAGATAAGGCT-CGTCGTCTTCGA-TCTGCTTCA
* ** * * *
26528472 CTACTGCTTAGGTG-GTTAAGGCTCACCGTCTTTGATCTACTCCA
1 CTACTGCTTAGG-GAGATAAGGCTCGTCGTCTTCGATCTGCTTCA
* * * * * ** * * *
26528516 TTACTACTTAGAGAGATGA-GATCTGTAATCTTC-AGCTTGTTTCC
1 CTACTGCTTAGGGAGATAAGGCTC-GTCGTCTTCGATC-TGCTTCA
** * *
26528560 CTACTATTTAAGGG-GTTAAGGCTCGTCGTCTTCGATCTGCTGCA
1 CTACTGCTT-AGGGAGATAAGGCTCGTCGTCTTCGATCTGCTTCA
* ** * * *
26528604 CTACTGTTTAGGGAGATAAGGC-CTGTAATCTTC-AGTCAGTTTCC
1 CTACTGCTTAGGGAGATAAGGCTC-GTCGTCTTCGA-TCTGCTTCA
* * ** *
26528648 CAACTGCTTA-GGAGGTTAAGGCTCACCGTCTTCGATCTAC-TCTA
1 CTACTGCTTAGGGA-GATAAGGCTCGTCGTCTTCGATCTGCTTC-A
* * * *
26528692 CTACTGCTTAGGGAGAT-AGGATGGT-GGCTT-GAATCTGCTCCA
1 CTACTGCTTAGGGAGATAAGGCTCGTCGTCTTCG-ATCTGCTTCA
** * * * * *
26528734 CTACTGCTTAGGGAGATAAGATTCGCCATTTTTGATCTACTTCA
1 CTACTGCTTAGGGAGATAAGGCTCGTCGTCTTCGATCTGCTTCA
26528778 CTACTGCTTAGGGAGATAAG
1 CTACTGCTTAGGGAGATAAG
26528798 ATCTATAAAT
Statistics
Matches: 538, Mismatches: 223, Indels: 96
0.63 0.26 0.11
Matches are distributed among these distances:
41 1 0.00
42 30 0.06
43 72 0.13
44 397 0.74
45 38 0.07
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (44 bp):
CTACTGCTTAGGGAGATAAGGCTCGTCGTCTTCGATCTGCTTCA
Found at i:26534551 original size:20 final size:20
Alignment explanation
Indices: 26534528--26534565 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26534518 CAAAGCAGTA
26534528 ACGAAAATAGGAACAAAATG
1 ACGAAAATAGGAACAAAATG
* *
26534548 ACGAAAATCGTAACAAAA
1 ACGAAAATAGGAACAAAA
26534566 ACGGATGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.16, T:0.11
Consensus pattern (20 bp):
ACGAAAATAGGAACAAAATG
Found at i:26535730 original size:15 final size:15
Alignment explanation
Indices: 26535690--26535732 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
26535680 ATTTTAAAAA
*
26535690 AATGATAGTAATAGT
1 AATGATAATAATAGT
* *
26535705 AATGATTATAATATT
1 AATGATAATAATAGT
*
26535720 AATGGTAATAATA
1 AATGATAATAATA
26535733 CAAGTAATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (15 bp):
AATGATAATAATAGT
Found at i:26535865 original size:3 final size:3
Alignment explanation
Indices: 26535852--26535990 Score: 97
Period size: 3 Copynumber: 47.3 Consensus size: 3
26535842 AATAGGTAAA
*
26535852 AAT ATAT AAT AAT AAT AAT -AT AAT AGT AAT AAT AAT -AT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * * * * * * *
26535896 AAT AGC AGT AAC AGT AAT AA- AAT AAT AGT TAT AAA AAT AAT ACT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
26535943 AGT AGT AAT AAT AAT AAT -AC AAT AGT AAT AAT AAT AGT AGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26535990 A
1 A
26535991 TTGAATTAAT
Statistics
Matches: 105, Mismatches: 26, Indels: 10
0.74 0.18 0.07
Matches are distributed among these distances:
2 7 0.07
3 95 0.90
4 3 0.03
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26535883 original size:23 final size:23
Alignment explanation
Indices: 26535857--26535978 Score: 126
Period size: 23 Copynumber: 5.4 Consensus size: 23
26535847 GTAAAAATAT
26535857 ATAATAATAATAATATAATAGTA
1 ATAATAATAATAATATAATAGTA
*
26535880 ATAATAAT-ATAATAATAATAGCA
1 ATAATAATAATAAT-ATAATAGTA
* * * *
26535903 GTAACAGTAATAAAATAATAGT-
1 ATAATAATAATAATATAATAGTA
*
26535925 -T-ATAAAAATAATACTAATAGTA
1 ATAATAATAATAATA-TAATAGTA
* *
26535947 GTAATAATAATAATACAATAGTA
1 ATAATAATAATAATATAATAGTA
26535970 ATAATAATA
1 ATAATAATA
26535979 GTAGTAATAA
Statistics
Matches: 80, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
20 8 0.10
21 8 0.10
22 5 0.06
23 44 0.55
24 15 0.19
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (23 bp):
ATAATAATAATAATATAATAGTA
Found at i:26535950 original size:44 final size:44
Alignment explanation
Indices: 26535862--26535987 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
26535852 AATATATAAT
26535862 AATAATAATATAATAGTAATAATAATATAATAATAATAGCAGTAAC
1 AATAATAATATAATAGTAATAA-AA-ATAATAATAATAGCAGTAAC
* * * * * *
26535908 AGTAATAAAATAATAGTTATAAAAATAATACTAATAGTAGTAAT
1 AATAATAATATAATAGTAATAAAAATAATAATAATAGCAGTAAC
* * * *
26535952 AATAATAATACAATAGTAATAATAATAGTAGTAATA
1 AATAATAATATAATAGTAATAAAAATAATAATAATA
26535988 ATATTGAATT
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 46 0.69
45 2 0.03
46 19 0.28
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.31
Consensus pattern (44 bp):
AATAATAATATAATAGTAATAAAAATAATAATAATAGCAGTAAC
Found at i:26536783 original size:20 final size:20
Alignment explanation
Indices: 26536758--26536795 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
26536748 ATTAGAAAAG
*
26536758 AAAAGAAAGAAAATAAAATA
1 AAAAGAAAGAAAAGAAAATA
26536778 AAAAGAAAGAAAAGAAAA
1 AAAAGAAAGAAAAGAAAA
26536796 AAATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (20 bp):
AAAAGAAAGAAAAGAAAATA
Found at i:26541311 original size:26 final size:24
Alignment explanation
Indices: 26541282--26541336 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 24
26541272 GGACTCACCA
*
26541282 CAGCTTGTATGAGCTTACTGATATAT
1 CAGCTTGTAAGAGCTTACTG-T-TAT
26541308 CAGCTTGTAAGAGCTTACTGTTAT
1 CAGCTTGTAAGAGCTTACTGTTAT
26541332 CAGCT
1 CAGCT
26541337 CAATAGAGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 8 0.29
25 1 0.04
26 19 0.68
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.36
Consensus pattern (24 bp):
CAGCTTGTAAGAGCTTACTGTTAT
Found at i:26541344 original size:24 final size:24
Alignment explanation
Indices: 26541317--26541386 Score: 97
Period size: 23 Copynumber: 2.9 Consensus size: 24
26541307 TCAGCTTGTA
*
26541317 AGAGCTTACTGTTATCAGCTCAAT
1 AGAGCTTACTGTTATCAACTCAAT
*
26541341 AGAGCTTACCGTT-TCAACTCAAT
1 AGAGCTTACTGTTATCAACTCAAT
*
26541364 AGAGCTTATTGTTTATCAACTCA
1 AGAGCTTACTG-TTATCAACTCA
26541387 GGAGGAGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
23 18 0.45
24 14 0.35
25 8 0.20
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34
Consensus pattern (24 bp):
AGAGCTTACTGTTATCAACTCAAT
Found at i:26541954 original size:18 final size:18
Alignment explanation
Indices: 26541931--26541967 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26541921 TTATGCTTTT
26541931 GGTATATCTTGTGTATTA
1 GGTATATCTTGTGTATTA
26541949 GGTATATCTTGTGTATTA
1 GGTATATCTTGTGTATTA
26541967 G
1 G
26541968 CTAAGCCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.05, G:0.24, T:0.49
Consensus pattern (18 bp):
GGTATATCTTGTGTATTA
Found at i:26545673 original size:41 final size:41
Alignment explanation
Indices: 26545622--26545709 Score: 140
Period size: 41 Copynumber: 2.1 Consensus size: 41
26545612 GCAAAAATTG
* * *
26545622 TAAAACACAGAGCAATAGCGGCGCTTTTGGTAAAATGCTGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
*
26545663 TAAAAGACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
26545704 TAAAAG
1 TAAAAG
26545710 TCATATAACT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (41 bp):
TAAAAGACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:26546352 original size:24 final size:24
Alignment explanation
Indices: 26546325--26546373 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
26546315 CGTATATTTA
* *
26546325 TTAAAATTTTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
26546349 TTAAAAGTCTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
26546373 T
1 T
26546374 GTTATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAATTAAT
Found at i:26546713 original size:7 final size:7
Alignment explanation
Indices: 26546654--26546806 Score: 67
Period size: 7 Copynumber: 21.6 Consensus size: 7
26546644 GAGTTACTAT
*
26546654 TTTAAGG
1 TTTATGG
26546661 TTTATGG
1 TTTATGG
*
26546668 ATTATGG
1 TTTATGG
*
26546675 ATTATGGG
1 TTTAT-GG
26546683 TTTATGG
1 TTTATGG
*
26546690 ATTATGG
1 TTTATGG
**
26546697 TTTACAG
1 TTTATGG
26546704 TTTATGG
1 TTTATGG
*
26546711 TTTAAGG
1 TTTATGG
* **
26546718 GTTGGGG
1 TTTATGG
*
26546725 TTTAAGG
1 TTTATGG
26546732 TTTA-GG
1 TTTATGG
*
26546738 TGTTAGGG
1 T-TTATGG
*
26546746 GTTATGG
1 TTTATGG
* *
26546753 GTTAGGG
1 TTTATGG
*
26546760 GTTATGG
1 TTTATGG
*
26546767 GTTATGG
1 TTTATGG
*
26546774 ATTTAAGG
1 -TTTATGG
*
26546782 GTTAT-G
1 TTTATGG
*
26546788 TTGTATGA
1 TT-TATGG
*
26546796 TTTAGGG
1 TTTATGG
26546803 TTTA
1 TTTA
26546807 GGGGATAAAA
Statistics
Matches: 112, Mismatches: 28, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
6 5 0.04
7 92 0.82
8 15 0.13
ACGTcount: A:0.20, C:0.01, G:0.35, T:0.44
Consensus pattern (7 bp):
TTTATGG
Found at i:26546727 original size:21 final size:21
Alignment explanation
Indices: 26546705--26546785 Score: 85
Period size: 21 Copynumber: 3.8 Consensus size: 21
26546695 GGTTTACAGT
26546705 TTATGGTTTAAGGGTT-GGGG
1 TTATGGTTTAAGGGTTAGGGG
*
26546725 TTTAAGGTTT-AGGTGTTAGGGG
1 -TTATGGTTTAAGG-GTTAGGGG
* * *
26546747 TTATGGGTTAGGGGTTATGGG
1 TTATGGTTTAAGGGTTAGGGG
26546768 TTATGGATTTAAGGGTTA
1 TTATGG-TTTAAGGGTTA
26546786 TGTTGTATGA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.06
21 31 0.63
22 15 0.31
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.41
Consensus pattern (21 bp):
TTATGGTTTAAGGGTTAGGGG
Found at i:26546947 original size:14 final size:14
Alignment explanation
Indices: 26546928--26546994 Score: 89
Period size: 14 Copynumber: 4.7 Consensus size: 14
26546918 GTTTGCAGGT
*
26546928 AAAATGTTTTCTGG
1 AAAATGATTTCTGG
26546942 AAAATGATTTCTGG
1 AAAATGATTTCTGG
* *
26546956 AAAATAATTTCTTGA
1 AAAATGATTTC-TGG
*
26546971 AAAATGATTTATGG
1 AAAATGATTTCTGG
26546985 AAAATGATTT
1 AAAATGATTT
26546995 ACTTTTCTAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 35 0.76
15 11 0.24
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.39
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:26547589 original size:22 final size:21
Alignment explanation
Indices: 26547547--26547604 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
26547537 ATTTTTTTAA
*
26547547 AAAAATTATTTAAAATTAATAT
1 AAAAATTA-TAAAAATTAATAT
26547569 AAAAGA-TATAAAAATTCAATAT
1 AAAA-ATTATAAAAATT-AATAT
26547591 AAAAATTATAAAAA
1 AAAAATTATAAAAA
26547605 AGTAAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 8 0.25
22 23 0.72
23 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAAATTATAAAAATTAATAT
Found at i:26547646 original size:40 final size:39
Alignment explanation
Indices: 26547602--26547728 Score: 161
Period size: 40 Copynumber: 3.2 Consensus size: 39
26547592 AAAATTATAA
*
26547602 AAAAGTAAAAAATTAGCGGCGTTTATGATAAAAACGCCGC
1 AAAAGTAAACAA-TAGCGGCGTTTATGATAAAAACGCCGC
26547642 AAAAG-ACAAGCAATAGCGGCGTTTAT-AT-AAAACGCCGC
1 AAAAGTA-AA-CAATAGCGGCGTTTATGATAAAAACGCCGC
* *
26547680 AAAAGGCAAGCAATAGCGGCGTTTATGATAAAAACGCCGC
1 AAAA-GTAAACAATAGCGGCGTTTATGATAAAAACGCCGC
26547720 AAAAAGTAA
1 -AAAAGTAA
26547729 TTTATTTTAA
Statistics
Matches: 77, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
38 30 0.39
39 7 0.09
40 34 0.44
41 6 0.08
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (39 bp):
AAAAGTAAACAATAGCGGCGTTTATGATAAAAACGCCGC
Found at i:26547683 original size:38 final size:40
Alignment explanation
Indices: 26547615--26547723 Score: 195
Period size: 38 Copynumber: 2.8 Consensus size: 40
26547605 AGTAAAAAAT
26547615 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
*
26547655 TAGCGGCGTTTAT-AT-AAAACGCCGCAAAAGGCAAGCAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
26547693 TAGCGGCGTTTATGATAAAAACGCCGCAAAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAA
26547724 AGTAATTTAT
Statistics
Matches: 66, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
38 35 0.53
39 4 0.06
40 27 0.41
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (40 bp):
TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
Found at i:26548030 original size:35 final size:34
Alignment explanation
Indices: 26547948--26548031 Score: 98
Period size: 35 Copynumber: 2.4 Consensus size: 34
26547938 TGACTAAGCC
* *
26547948 ATTTGCCTAAATCATAGTTCCCCCGAAACCCTCA
1 ATTTCCCTAAATCATAGTTCCCCCAAAACCCTCA
* *
26547982 TTTTCTCCCAAATCATAGTTCCCCCAAAACCC-CAAA
1 ATTTC-CCTAAATCATAGTTCCCCCAAAACCCTC--A
26548018 ATTTCCCTAAATCA
1 ATTTCCCTAAATCA
26548032 AACCCATTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
34 4 0.10
35 32 0.78
36 5 0.12
ACGTcount: A:0.32, C:0.36, G:0.05, T:0.27
Consensus pattern (34 bp):
ATTTCCCTAAATCATAGTTCCCCCAAAACCCTCA
Found at i:26550745 original size:9 final size:9
Alignment explanation
Indices: 26550731--26550789 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
26550721 ATCTTAAAAA
26550731 ATAACTTAC
1 ATAACTTAC
*
26550740 ATAACTCAC
1 ATAACTTAC
26550749 ATAACTTAC
1 ATAACTTAC
*
26550758 ATAATTTAC
1 ATAACTTAC
*
26550767 ATAACTCAC
1 ATAACTTAC
*
26550776 ATAACGTAC
1 ATAACTTAC
26550785 ATAAC
1 ATAAC
26550790 AACTTACAGA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:26550769 original size:27 final size:27
Alignment explanation
Indices: 26550731--26550789 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
26550721 ATCTTAAAAA
*
26550731 ATAACTTACATAACTCACATAACTTAC
1 ATAACTTACATAACTCACATAACGTAC
*
26550758 ATAATTTACATAACTCACATAACGTAC
1 ATAACTTACATAACTCACATAACGTAC
26550785 ATAAC
1 ATAAC
26550790 AACTTACAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (27 bp):
ATAACTTACATAACTCACATAACGTAC
Done.